Psyllid ID: psy17311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDVI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEccccHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHcccccccccccEEcccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHccccccccccccHHHHHccccccccccccccEEEcccHHHHHHHHHcccccccccccccEEcccccccccccccccccHHHccccccccccEEEcccEEEEEEEEccccEEEEEEEEEccEEEEEEEccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHccccEEEEEEccEHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHcccccccEEEEcccccHHHcccccccccccccEEcccHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEEEEEccccccccHHHHHHcHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLsyynydmydpenrpidqqqlhreyDFIVIGGGSAGAVVASRLSEVAHWSILLLeagpdenevtdvpSLAAWLQLSKFdwqykteptgraclgynqgrcswprgkvlggsSVLNYMLYVRGnrfdydhweslgnpgwgyddvlpyfkksednrnpylaknrslklsnglhdveagqelgyenrdingekqtgfmvaqgtirrgsrcstakAFLRPVRKRKNLHIAMRAHVTKILvnpatkkaygvQFIRHGIKQTVLARREELEVISFRTTTLSRDVI
Flexible Loop (DISEMBL)
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVaqgtirrgsrcstakaflrpvrkrkNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQtvlarreelevisfrtttlsrdvi
Low Complexity Region (SEG)
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFivigggsagavvasRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDVI
Disordered region (IsUnstruct)
*IFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK*****************************************QTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT********
Disordered Region (DISOPRED)
***ALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMY**********QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLS****
Disordered Region (DISEMBL)
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDVI
Disordered Region (DISPRO)
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR*********
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.822	0.408	0.498	1e-66
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.822	0.408	0.487	5e-66
A6X2G7	549	Choline dehydrogenase OS=	yes	N/A	0.732	0.413	0.403	7e-39
Q985M5	550	Choline dehydrogenase OS=	no	N/A	0.741	0.418	0.404	3e-38
Q8G1Z8	549	Choline dehydrogenase OS=	yes	N/A	0.732	0.413	0.392	6e-38
Q8YFY2	549	Choline dehydrogenase OS=	no	N/A	0.732	0.413	0.392	6e-38
B0CKN4	549	Choline dehydrogenase OS=	no	N/A	0.732	0.413	0.392	6e-38
A5VPA6	549	Choline dehydrogenase OS=	no	N/A	0.732	0.413	0.392	6e-38
C3MIE4	549	Choline dehydrogenase OS=	no	N/A	0.783	0.442	0.386	8e-38
A9M9H8	549	Choline dehydrogenase OS=	yes	N/A	0.732	0.413	0.392	9e-38

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  253 bits (646), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/271 (49%), Positives = 173/271 (63%), Gaps = 16/271 (5%)

Query: 39  DMYDPENRPIDQ--QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT 96
           D+ DP  R   +   +   EYDFIVIGGGSAG+VVASRLSEV  W +LL+EAG DE    
Sbjct: 45  DLEDPCGRASSRFRSEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGA 104

Query: 97  DVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
            +PS+      S  D++Y TEP   ACL   + RC WPRGKVLGG+SVLN M+YVRGNR 
Sbjct: 105 QIPSMFLNFIGSDIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNRE 164

Query: 157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRN------PYLAKNRSLKLSNGLHD------- 203
           DYD W + GNPGW Y+DVLP+FKKSEDN +       Y AK   L +    ++       
Sbjct: 165 DYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHAKGGLLPVGKFPYNPPLSYAI 224

Query: 204 VEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVT 263
           ++AG+ELG+   D+NG+  TGFM+AQ T R G R S+A+AFLRP R R NLHI +    T
Sbjct: 225 LKAGEELGFSVHDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTAT 284

Query: 264 KILVNPATKKAYGVQFI-RHGIKQTVLARRE 293
           KIL++P TK   GV+   + G  + +L ++E
Sbjct: 285 KILIHPHTKNVLGVEVSDQFGSTRKILVKKE 315

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  251 bits (641), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 132/271 (48%), Positives = 173/271 (63%), Gaps = 16/271 (5%)

Query: 39  DMYDPENRPIDQ--QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT 96
           D+ DP  R   +   +   EYDFIVIGGGSAG+VVASRLSEV  W +LL+EAG DE    
Sbjct: 45  DLEDPCGRASTRFRSEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGA 104

Query: 97  DVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
            +PS+      S  D++Y TEP   ACL   + RC WPRGKVLGG+SV+N M+Y+RGNR 
Sbjct: 105 QIPSMFLNFIGSDIDYRYNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNRE 164

Query: 157 DYDHWESLGNPGWGYDDVLPYFKKSEDNR------NPYLAKNRSLKLSNGLHD------- 203
           DYD W + GNPGW Y DVLP+FKKSEDN         Y AK   L +    ++       
Sbjct: 165 DYDDWAAQGNPGWSYQDVLPFFKKSEDNLELDAVGTEYHAKGGLLPVGKFPYNPPLSYAL 224

Query: 204 VEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVT 263
           ++AG+E+G+  +D+NG+  TGFM+AQ T R G R S+A+AFLRP R R NLHI +   VT
Sbjct: 225 LKAGEEMGFSVQDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTVT 284

Query: 264 KILVNPATKKAYGVQFI-RHGIKQTVLARRE 293
           K+L++P TK   GV+   + G  + +L ++E
Sbjct: 285 KVLIHPGTKNVVGVEVSDQFGSMRKILVKKE 315

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1

 Score =  161 bits (407), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 144/255 (56%), Gaps = 28/255 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE   +S++++E G PD   +  +P+ L+  + +  +DW 
Sbjct: 2   EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61

Query: 114 YKTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW 169
           + TEP     GR+ +         PRGKVLGGSS +N M+YVRG+  DYDHW   G  GW
Sbjct: 62  FSTEPEPHIGGRSLVT--------PRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGW 113

Query: 170 GYDDVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDIN 218
            Y DVLPYFK+ E++   +  +   N  L +  G  D       VEAG E G+E   D N
Sbjct: 114 AYADVLPYFKRMENSSGGQEGWRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYN 173

Query: 219 GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQ 278
           GEKQ GF   + TI  G R S A A+L+P  KR N+ + ++    KI++    K+A GV+
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGLARKIVLE--GKRAVGVE 230

Query: 279 FIRHGIKQTVLARRE 293
                   T+ ARRE
Sbjct: 231 IEAGRSFSTIRARRE 245

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA PE=3 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 145/252 (57%), Gaps = 22/252 (8%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLE-AGPDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE    S++++E  G D   +  +PS L+  L +S +DW 
Sbjct: 3   EADFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYDWG 62

Query: 114 YKTEPTGRACLGYNQGRC-SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYD 172
           + +EP     LG   GR  + PRGKV+GGSS +N M+YVRG+  D+DHW   G  GWG+ 
Sbjct: 63  FASEP--EPHLG---GRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFA 117

Query: 173 DVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDINGEK 221
           DVLPYFK+ EDN    + +      L +  G          VEAG++ G+E   D NG K
Sbjct: 118 DVLPYFKRMEDNDGGEDGWRGHGGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYNGSK 177

Query: 222 QTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR 281
           Q GF   + TI  G R S A A+L+P  KRKN+ + ++    ++++    ++A GV+   
Sbjct: 178 QEGFGPMEQTISGGRRWSAASAYLKPALKRKNVSL-VKGFARRVIIE--NQRAIGVEIEA 234

Query: 282 HGIKQTVLARRE 293
           H   Q V ARRE
Sbjct: 235 HKQIQVVKARRE 246

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330) GN=betA PE=3 SV=1

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 28/255 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE   +S++++E G PD   +  +P+ L+  + +  +DW 
Sbjct: 2   EADFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61

Query: 114 YKTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW 169
           + +EP     GR+ +         PRGKVLGGSS +N M+YVRG+  D+DHW   G  GW
Sbjct: 62  FSSEPEPHIGGRSLVT--------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGW 113

Query: 170 GYDDVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDIN 218
            Y DVLPYFK+ E++   +  +   N  L +  G  D       VEAG + G+E   D N
Sbjct: 114 AYADVLPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173

Query: 219 GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQ 278
           GEKQ GF   + TI  G R S A A+L+P  KR N+ + ++    KI++    K+A GV+
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVE 230

Query: 279 FIRHGIKQTVLARRE 293
                   T+ ARRE
Sbjct: 231 IEAGRTFSTIRARRE 245

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 28/255 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE   +S++++E G PD   +  +P+ L+  + +  +DW 
Sbjct: 2   EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61

Query: 114 YKTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW 169
           + +EP     GR+ +         PRGKVLGGSS +N M+YVRG+  D+DHW   G  GW
Sbjct: 62  FSSEPEPHIRGRSLVT--------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGW 113

Query: 170 GYDDVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDIN 218
            Y DVLPYFK+ E++   +  +   N  L +  G  D       VEAG + G+E   D N
Sbjct: 114 AYADVLPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173

Query: 219 GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQ 278
           GEKQ GF   + TI  G R S A A+L+P  KR N+ + ++    KI++    K+A GV+
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVE 230

Query: 279 FIRHGIKQTVLARRE 293
                   T+ ARRE
Sbjct: 231 IEAGRTFSTIRARRE 245

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=betA PE=3 SV=1

 Score =  157 bits (398), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 28/255 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE   +S++++E G PD   +  +P+ L+  + +  +DW 
Sbjct: 2   EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61

Query: 114 YKTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW 169
           + +EP     GR+ +         PRGKVLGGSS +N M+YVRG+  D+DHW   G  GW
Sbjct: 62  FSSEPEPHIGGRSLVT--------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGW 113

Query: 170 GYDDVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDIN 218
            Y DVLPYFK+ E++   +  +   N  L +  G  D       VEAG + G+E   D N
Sbjct: 114 AYADVLPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173

Query: 219 GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQ 278
           GEKQ GF   + TI  G R S A A+L+P  KR N+ + ++    KI++    K+A GV+
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVE 230

Query: 279 FIRHGIKQTVLARRE 293
                   T+ ARRE
Sbjct: 231 IEAGRTFSTIRARRE 245

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betA PE=3 SV=1

 Score =  157 bits (398), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 28/255 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE   +S++++E G PD   +  +P+ L+  + +  +DW 
Sbjct: 2   EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61

Query: 114 YKTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW 169
           + +EP     GR+ +         PRGKVLGGSS +N M+YVRG+  D+DHW   G  GW
Sbjct: 62  FSSEPEPHIGGRSLVT--------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGW 113

Query: 170 GYDDVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDIN 218
            Y DVLPYFK+ E++   +  +   N  L +  G  D       VEAG + G+E   D N
Sbjct: 114 AYADVLPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173

Query: 219 GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQ 278
           GEKQ GF   + TI  G R S A A+L+P  KR N+ + ++    KI++    K+A GV+
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVE 230

Query: 279 FIRHGIKQTVLARRE 293
                   T+ ARRE
Sbjct: 231 IEAGRTFSTIRARRE 245

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 149/264 (56%), Gaps = 21/264 (7%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLE-AGPDENEVTDVPSLAAW-LQLSKFDWQ 113
           + D+I+IG GSAG+ +A RLSE +  S+++LE  G D      +P+  AW + +++++W 
Sbjct: 2   QADYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWG 61

Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDD 173
           Y +EP        N  R + PRGKV+GGSS +N M+YVRG+  D+D WE LG  GW Y D
Sbjct: 62  YLSEPEPH----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYAD 117

Query: 174 VLPYFKKSEDN---RNPYLAKNRSLKLSNG------LHD-VEAGQELGYE-NRDINGEKQ 222
           VLPYFK+ E +    + +   +  L +  G       H  VEAG++ G+E   D NG KQ
Sbjct: 118 VLPYFKRMEHSHGGEDGWRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQ 177

Query: 223 TGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH 282
            GF + + T  RG R S A A+L+P  KR N+ + +R    KI++     +A GV+  R 
Sbjct: 178 EGFGLMEQTTWRGRRWSAASAYLKPALKRPNVQL-IRCFARKIVIE--NGRATGVEIERG 234

Query: 283 GIKQTVLARREEL-EVISFRTTTL 305
           G  + V A RE +    SF +  L
Sbjct: 235 GRIEVVKANREVIVSASSFNSPKL 258

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=betA PE=3 SV=1

 Score =  157 bits (397), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 100/255 (39%), Positives = 144/255 (56%), Gaps = 28/255 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENEVTDVPS-LAAWLQLSKFDWQ 113
           E DF++IG GSAG+ +A RLSE   +S++++E G PD   +  +P+ L+  + +  +DW 
Sbjct: 2   EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61

Query: 114 YKTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW 169
           + +EP     GR+ +         PRGKVLGGSS +N M+YVRG+  D+DHW   G  GW
Sbjct: 62  FSSEPEPHIGGRSLVT--------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGW 113

Query: 170 GYDDVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDIN 218
            Y DVLPYFK+ E++   +  +   N  L +  G  D       VEAG + G+E   D N
Sbjct: 114 AYADVLPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYN 173

Query: 219 GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQ 278
           GEKQ GF   + TI  G R S A A+L+P  KR N+ + ++    KI++    K+A GV+
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLE--GKRAVGVE 230

Query: 279 FIRHGIKQTVLARRE 293
                   T+ ARRE
Sbjct: 231 IEAGRTFSTIRARRE 245

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
193664531	628	PREDICTED: glucose dehydrogenase [accept	0.945	0.466	0.692	1e-122
340720647	626	PREDICTED: glucose dehydrogenase [accept	0.938	0.464	0.678	1e-122
156551708	624	PREDICTED: glucose dehydrogenase [accept	0.941	0.467	0.687	1e-121
322796401	624	hypothetical protein SINV_00375 [Solenop	0.941	0.467	0.684	1e-121
242018476	630	glucose dehydrogenase precursor, putativ	0.945	0.465	0.673	1e-121
328785230	625	PREDICTED: glucose dehydrogenase [accept	0.945	0.468	0.669	1e-121
350401264	627	PREDICTED: glucose dehydrogenase [accept	0.938	0.464	0.665	1e-120
383860470	624	PREDICTED: glucose dehydrogenase [accept	0.945	0.469	0.673	1e-120
307172021	630	Glucose dehydrogenase [acceptor] [Campon	0.941	0.463	0.674	1e-120
307206069	618	Glucose dehydrogenase [acceptor] [Harpeg	0.945	0.474	0.666	1e-119

>gi|193664531|ref|XP_001948787.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/309 (69%), Positives = 247/309 (79%), Gaps = 16/309 (5%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           MIFALIA G+ LK GLTIVGT +W++PVLIA ++YY YD+YDPE+RP +Q+ L  EYDFI
Sbjct: 1   MIFALIAAGSALKAGLTIVGTSVWMIPVLIAAMAYYRYDIYDPESRPFNQKILRPEYDFI 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           VIGGGSAGAVVASRLSE+ HWS+LLLEAGPDENE++DVPSLAA+LQLS+ DWQYKTEPTG
Sbjct: 61  VIGGGSAGAVVASRLSEIGHWSVLLLEAGPDENELSDVPSLAAYLQLSRLDWQYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           +ACLG   GRC+WPRGKVLGGSSVLNYMLYVRGNR DYD W  +GN GWGY ++L YF K
Sbjct: 121 KACLGLKNGRCNWPRGKVLGGSSVLNYMLYVRGNRHDYDGWRDMGNEGWGYSEILKYFTK 180

Query: 181 SEDNRNPYLAKNRSLKLSNG---------------LHDVEAGQEL-GYENRDINGEKQTG 224
           SEDNRNPYLA+  S     G               L  VEAGQE+ GY NRDING+ QTG
Sbjct: 181 SEDNRNPYLARPGSPYHRAGGLLTVQEAPWKSPLVLSFVEAGQEVTGYPNRDINGKYQTG 240

Query: 225 FMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGI 284
           FMVAQGTIRRG+RCSTAKAFLRP R R NLH+AM+AHVTK+++NP TK+A GVQ +R G 
Sbjct: 241 FMVAQGTIRRGTRCSTAKAFLRPARLRPNLHVAMQAHVTKVIINPTTKRATGVQLLRDGR 300

Query: 285 KQTVLARRE 293
              V A+RE
Sbjct: 301 MHLVHAKRE 309

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|340720647|ref|XP_003398745.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/308 (67%), Positives = 248/308 (80%), Gaps = 17/308 (5%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+F+ I   + LK  L++VGT +WL+P+LIAGLSYY YD  DPE+RPID+  L+ EYDF+
Sbjct: 1   MVFSAIVVTSALKGALSLVGTSLWLIPLLIAGLSYYRYDQLDPESRPIDKYPLYAEYDFV 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           V+G GSAGAVVA+RLSE+A W++LLLEAGPDENEVTDVPSLAA+LQL+K DW+YKTEPTG
Sbjct: 61  VVGAGSAGAVVANRLSEIAKWNVLLLEAGPDENEVTDVPSLAAYLQLTKLDWKYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           RACL    GRC+WPRGKVLGGSSVLNYMLYVRGNR DYD+WES+GNPGWGYD  L YFKK
Sbjct: 121 RACLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRHDYDYWESMGNPGWGYDQALYYFKK 180

Query: 181 SEDNRNPYLAKNRSLKLSNG---------------LHDVEAGQELGYENRDINGEKQTGF 225
           SEDNRNPYL   RS   S G               +  V+AG E+GYENRDINGE+QTGF
Sbjct: 181 SEDNRNPYL--QRSPYHSTGGYLTVQESPWKTPLVVAFVQAGTEMGYENRDINGEEQTGF 238

Query: 226 MVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIK 285
           M+AQGTIRRGSRCSTAKAFLRP+R R+N+H AM +HVT++L+NP T KA GV+F+R G +
Sbjct: 239 MIAQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNSHVTRVLINPVTMKATGVEFVRDGRR 298

Query: 286 QTVLARRE 293
           Q V AR+E
Sbjct: 299 QMVRARKE 306

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|156551708|ref|XP_001600419.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/307 (68%), Positives = 245/307 (79%), Gaps = 15/307 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+ + I   + LK  + +VGTG+WLVP+LIAGLSYY+YD  DPE+RPID+  L  EYDF+
Sbjct: 1   MVLSTIVVTSALKGAIGLVGTGLWLVPLLIAGLSYYHYDQLDPESRPIDRYPLDAEYDFV 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           VIGGGSAGAVVASRLSE+ HW +LLLEAGPDENE+TDVPSLAA+LQL+K DW+YKTEP G
Sbjct: 61  VIGGGSAGAVVASRLSEIMHWKVLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKTEPNG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           R+CL    GRC+WPRGKVLGGSSVLNYMLYVRGNR DYDHWE+LGNPGWGYD  L YFKK
Sbjct: 121 RSCLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRHDYDHWEALGNPGWGYDQALYYFKK 180

Query: 181 SEDNRNPYLAKNRSLKLSNG--------------LHDVEAGQELGYENRDINGEKQTGFM 226
           SEDNRNPYL +N     + G              +  V+AG E+GYENRDINGE QTGFM
Sbjct: 181 SEDNRNPYL-RNSPYHGTGGYLTVQESPWRTPLVVAFVQAGTEIGYENRDINGEYQTGFM 239

Query: 227 VAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQ 286
           +AQGTIRRG+RCSTAKAFLRPVR RKNLH AM+AHVT+IL+N  T KA GV+F+R G +Q
Sbjct: 240 IAQGTIRRGTRCSTAKAFLRPVRLRKNLHTAMKAHVTRILINSVTMKATGVEFVRDGHRQ 299

Query: 287 TVLARRE 293
            V AR+E
Sbjct: 300 QVRARKE 306

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|322796401|gb|EFZ18935.1| hypothetical protein SINV_00375 [Solenopsis invicta]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/307 (68%), Positives = 250/307 (81%), Gaps = 15/307 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+F+ I   + LK  + +VGTG+WLVP+LIAGLSYY YD  DPE+RPID+  L+ EYDFI
Sbjct: 1   MVFSAIVVTSALKGAIGLVGTGLWLVPLLIAGLSYYRYDQLDPESRPIDKHPLYFEYDFI 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           VIGGGSAGAV+ASRLSE+  W++LLLEAGPDENE+TDVPSLAA+LQLSK DW+YKTE TG
Sbjct: 61  VIGGGSAGAVIASRLSEIPDWNVLLLEAGPDENEITDVPSLAAYLQLSKLDWKYKTEATG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           +ACL    GRC+WPRG+VLGGSSVLNYMLYVRGN+ DYDHWESLGNPGWGYD VL YFKK
Sbjct: 121 KACLAMKGGRCNWPRGRVLGGSSVLNYMLYVRGNKQDYDHWESLGNPGWGYDQVLYYFKK 180

Query: 181 SEDNRNPYLAKNRSLKLSNG--------------LHDVEAGQELGYENRDINGEKQTGFM 226
           SEDNRNPYL K+ +   S G              +  V+AG E+GYENRDINGE+QTGFM
Sbjct: 181 SEDNRNPYLRKS-TYHASGGYLTVQESPWKTPLVVAFVQAGVEMGYENRDINGERQTGFM 239

Query: 227 VAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQ 286
           ++QG IRRGSRCSTAKAFLRPVR RKN+HIAM +HVT+I+++P T +A GV+F+R+G KQ
Sbjct: 240 ISQGNIRRGSRCSTAKAFLRPVRLRKNIHIAMNSHVTRIVIDPLTMRATGVEFVRNGRKQ 299

Query: 287 TVLARRE 293
            V AR+E
Sbjct: 300 IVKARKE 306

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018476|ref|XP_002429701.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514704|gb|EEB16963.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/306 (67%), Positives = 246/306 (80%), Gaps = 13/306 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           +  +++     LKT +++VGTG+WL+P+LIAGL+YY YD  DPE+RPIDQ  L++EYDFI
Sbjct: 3   VFLSILTVTAALKTAISVVGTGLWLIPLLIAGLAYYRYDSLDPESRPIDQYPLYKEYDFI 62

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           V+GGGSAGAVVASRLSE+  W ILLLEAGPDENE++DVP+LAA+LQLS+ DWQYKTEPTG
Sbjct: 63  VVGGGSAGAVVASRLSEIPDWKILLLEAGPDENEISDVPALAAFLQLSRLDWQYKTEPTG 122

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           +ACLG   GRC+WPRGKVLGGSSVLNYM+YVRGN+ DY+HWESLGNPGWGY D L YFKK
Sbjct: 123 KACLGMKGGRCNWPRGKVLGGSSVLNYMVYVRGNKKDYEHWESLGNPGWGYPDALYYFKK 182

Query: 181 SEDNRNPYLAKNR-------------SLKLSNGLHDVEAGQELGYENRDINGEKQTGFMV 227
           SEDNRNPYLA+ +               +    L  V+AGQE+GY+N DING  QTGFM+
Sbjct: 183 SEDNRNPYLARTKYHSRGGYLTVQEAPWRTPLSLAFVQAGQEIGYDNVDINGASQTGFML 242

Query: 228 AQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQT 287
           AQGT+RRGSRCSTAKAFLRPVR RKNLH AM++ V KIL+NP   KAYGV FIR+G+KQ 
Sbjct: 243 AQGTLRRGSRCSTAKAFLRPVRLRKNLHTAMKSQVIKILINPKINKAYGVIFIRNGVKQI 302

Query: 288 VLARRE 293
             AR+E
Sbjct: 303 AYARKE 308

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785230|ref|XP_003250566.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Apis mellifera] gi|328785232|ref|XP_003250567.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Apis mellifera] gi|328785234|ref|XP_003250568.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 3 [Apis mellifera]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/306 (66%), Positives = 244/306 (79%), Gaps = 13/306 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+ + I   + LK  L+++GT +WL+P+LIAGLSYY YD  DPE+RPID+  L+ EYDFI
Sbjct: 1   MVLSAIVVASALKGALSLIGTSLWLIPLLIAGLSYYRYDQLDPESRPIDRYPLYPEYDFI 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           V+GGGSAGAVVA+RLSE+  W++LLLEAGPDENEVTDVPSLAA+LQL+K DW+YKTEPTG
Sbjct: 61  VVGGGSAGAVVANRLSEIPKWNVLLLEAGPDENEVTDVPSLAAYLQLTKIDWKYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           RACL    GRC+WPRGKVLGGSSVLNYMLYVRGNR DYDHWES+GNPGWGYD  L YFKK
Sbjct: 121 RACLAMKDGRCNWPRGKVLGGSSVLNYMLYVRGNRHDYDHWESMGNPGWGYDQALYYFKK 180

Query: 181 SEDNRNPYLAKN-------------RSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMV 227
           SEDNRNPYL K+                K    +  V+AG E+GYENRDINGE+QTGFM+
Sbjct: 181 SEDNRNPYLQKSPYHSTGGYLTVQESPWKTPLVVAFVQAGTEIGYENRDINGERQTGFMI 240

Query: 228 AQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQT 287
           AQGTIRRGSRCSTAKAFLRP+R R+N+H AM  HVT+IL++P   +A GV+F+R G +Q 
Sbjct: 241 AQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNCHVTRILIDPIAMRATGVEFVRDGRRQI 300

Query: 288 VLARRE 293
           V AR+E
Sbjct: 301 VRARKE 306

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350401264|ref|XP_003486103.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/308 (66%), Positives = 248/308 (80%), Gaps = 17/308 (5%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+F+ +   + LK  L++VGT +WL+P+LIAGLSYY YD  DPE+RPID+  L+ EYDF+
Sbjct: 1   MVFSALVVTSALKGALSLVGTSLWLIPLLIAGLSYYRYDQLDPESRPIDKYPLYAEYDFV 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           ++G GSAGAVVA+RLSE++ W++LLLEAGPDENEVTDVPSLAA+LQL+K DW+YKTEPTG
Sbjct: 61  IVGAGSAGAVVANRLSEISKWNVLLLEAGPDENEVTDVPSLAAYLQLTKLDWKYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           RACL    GRC+WPRGKVLGGSSVLNYMLYVRGNR DYD+WES+GNPGWGYD  L YFKK
Sbjct: 121 RACLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRHDYDYWESMGNPGWGYDQALYYFKK 180

Query: 181 SEDNRNPYLAKNRSLKLSNG---------------LHDVEAGQELGYENRDINGEKQTGF 225
           SEDNRNPYL   RS   S G               +  V+AG E+GYENRDING++QTGF
Sbjct: 181 SEDNRNPYL--QRSPYHSTGGYLTVQESPWKTPLVVAFVQAGTEMGYENRDINGQEQTGF 238

Query: 226 MVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIK 285
           M+AQGTIRRGSRCSTAKAFLRP+R R+N+H AM +HVT++L+NP T KA GV+F+R G +
Sbjct: 239 MIAQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNSHVTRVLINPVTMKATGVEFVRDGRR 298

Query: 286 QTVLARRE 293
           Q V AR+E
Sbjct: 299 QMVRARKE 306

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383860470|ref|XP_003705712.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/306 (67%), Positives = 246/306 (80%), Gaps = 13/306 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+F+ I   + LK  L ++GT +WL+P+LIAGLSYY YD  DPE+RPID+  L+ EYDF+
Sbjct: 1   MVFSAIVVTSALKGALGLMGTSLWLIPLLIAGLSYYRYDQLDPESRPIDRYPLYAEYDFV 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           V+GGGSAGAVVASRLSE+ +W++LLLEAGPDENE+TDVPSLAA+LQL+K DW+YKTEPTG
Sbjct: 61  VVGGGSAGAVVASRLSEIPNWNVLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           RACLG   GRC+WPRGKVLGGSSVLNYMLYVRGN+ DYD+WESLGNPGWGYD  L YFKK
Sbjct: 121 RACLGMKAGRCNWPRGKVLGGSSVLNYMLYVRGNKHDYDYWESLGNPGWGYDQALYYFKK 180

Query: 181 SEDNRNPYLAKN-------------RSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMV 227
           SEDNRNPYL K+                K    +  V+AG E+GYENRDING +QTGFM+
Sbjct: 181 SEDNRNPYLQKSPYHSTGGYLTVQESPWKTPLVVAFVQAGTEIGYENRDINGARQTGFMI 240

Query: 228 AQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQT 287
           AQGTIRRGSRCSTAKAFLRP+R R+N+H AM +HVTKIL++P T +A GV+F R G +Q 
Sbjct: 241 AQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNSHVTKILIDPITLRATGVEFFRDGRRQI 300

Query: 288 VLARRE 293
           V AR+E
Sbjct: 301 VRARKE 306

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307172021|gb|EFN63615.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/307 (67%), Positives = 249/307 (81%), Gaps = 15/307 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+F+ I   + LK  ++++GTG+WLVP+LIAGLSYY+YD  DPE+RPID+  L+  YDFI
Sbjct: 1   MVFSTIIVTSALKGAISLMGTGLWLVPLLIAGLSYYHYDQLDPESRPIDRYPLYSNYDFI 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           V+GGGSAGAVVASRLSE+  W++LLLEAGPDENE+TDVPSLAA+LQL+K DW+YKTEPTG
Sbjct: 61  VVGGGSAGAVVASRLSEIPDWNVLLLEAGPDENEITDVPSLAAYLQLTKLDWKYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           +ACL    GRC+WPRGKVLGGSSVLNYMLYVRGNR+DYDHWESLGN GWGY  VL YFKK
Sbjct: 121 KACLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRYDYDHWESLGNSGWGYKQVLYYFKK 180

Query: 181 SEDNRNPYLAKNRSLKLSNGLHDV--------------EAGQELGYENRDINGEKQTGFM 226
           SEDNRNPYL K+     +NG   V              +AG E+GYENRDINGE+QTGFM
Sbjct: 181 SEDNRNPYLQKS-PYHATNGYLTVQESPWKTPLVVAFIQAGVEMGYENRDINGERQTGFM 239

Query: 227 VAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQ 286
           ++QGTIRRG+RCSTAKAFLRPVR R+N+H A+ +HVTKI+++P T KA GV+F+R G KQ
Sbjct: 240 ISQGTIRRGNRCSTAKAFLRPVRLRRNIHTAINSHVTKIIIDPLTMKAIGVEFVRDGRKQ 299

Query: 287 TVLARRE 293
            V AR+E
Sbjct: 300 MVRARKE 306

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307206069|gb|EFN84162.1| Glucose dehydrogenase [acceptor] [Harpegnathos saltator]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/306 (66%), Positives = 247/306 (80%), Gaps = 13/306 (4%)

Query: 1   MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFI 60
           M+F+ I   + LK  + +VGTG+WLVP+LIAGLSYY YD  DPE+RPI++  L+ EYDF+
Sbjct: 1   MVFSTIVVTSALKGAIGLVGTGLWLVPLLIAGLSYYRYDQLDPESRPINRYPLYAEYDFV 60

Query: 61  VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
           V+GGGSAGAVVASRLSE+  W++LLLEAGPDENE++DVPSLAA+LQL+K DW+YKTEPTG
Sbjct: 61  VVGGGSAGAVVASRLSEIPEWNVLLLEAGPDENEISDVPSLAAYLQLTKLDWKYKTEPTG 120

Query: 121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
           RACLG   GRC+WPRGKVLGGSSVLNYMLYVRGN  D++HWESLGNP WGYD+VL YFKK
Sbjct: 121 RACLGMKGGRCNWPRGKVLGGSSVLNYMLYVRGNAHDFNHWESLGNPDWGYDEVLHYFKK 180

Query: 181 SEDNRNPYLAKN-------------RSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMV 227
           SEDNRNPYL ++                K    +  V+AG E+GYENRDINGE+QTGFM+
Sbjct: 181 SEDNRNPYLQRSPYHATGGYLTVQESPWKTPLVVAFVQAGVEIGYENRDINGERQTGFMI 240

Query: 228 AQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQT 287
           +QGTIRRG+RCSTAKAFLRPVR RKN+H AM +HVTKI+++P T KA GV+F+R   +Q 
Sbjct: 241 SQGTIRRGNRCSTAKAFLRPVRLRKNIHTAMNSHVTKIIIDPLTMKAVGVEFVRDDRRQI 300

Query: 288 VLARRE 293
           V AR+E
Sbjct: 301 VRARKE 306

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.945	0.416	0.591	7.1e-100
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.941	0.466	0.516	2.8e-82
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.929	0.396	0.514	5.2e-81
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.819	0.293	0.514	1e-68
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.858	0.428	0.442	4.6e-57
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.803	0.404	0.442	3.3e-56
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.822	0.408	0.450	1.3e-54
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.806	0.401	0.451	5.5e-54
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.893	0.437	0.402	4e-51
FB|FBgn0030587	616	CG9522 [Drosophila melanogaste	0.803	0.404	0.418	1.1e-48

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 181/306 (59%), Positives = 225/306 (73%)

Query:     1 MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFX 60
             M+  L+   T++K+   +V TG+WL+P+++A ++YY YD  DPE+RP+DQ  L+ EYDF 
Sbjct:     1 MVLNLLFITTVIKSTFGVVTTGLWLIPLMLAAITYYRYDAVDPESRPLDQLNLYPEYDFI 60

Query:    61 XXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTG 120
                          RLSEV  W +LL+EAGPDENE++DVPSLAA+LQLSK DW YKTEP+ 
Sbjct:    61 VVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKTEPST 120

Query:   121 RACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKK 180
             +ACLG    RC+WPRG+VLGGSSVLNYMLYVRGNR DYDHW SLGNPGW YD+VL YFKK
Sbjct:   121 KACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLRYFKK 180

Query:   181 SEDNRNPYLAKNRS------LKLSNG-LHD------VEAGQELGYENRDINGEKQTGFMV 227
             SEDNRNPYLA N+       L +     H       VEAG +LGY+NRDING KQ GFM+
Sbjct:   181 SEDNRNPYLANNKYHGRGGLLTVQESPWHSPLVAAFVEAGTQLGYDNRDINGAKQAGFMI 240

Query:   228 AQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQT 287
             AQGTIRRGSRCSTAKAFLRP+R RKN H++M +HVT++++ P T +A  V+F++HG    
Sbjct:   241 AQGTIRRGSRCSTAKAFLRPIRMRKNFHLSMNSHVTRVIIEPGTMRAQAVEFVKHGKVYR 300

Query:   288 VLARRE 293
             + ARRE
Sbjct:   301 IAARRE 306

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 160/310 (51%), Positives = 209/310 (67%)

Query:     1 MIFALIAFGTILKTGLTIVGTGIWLVPVLIAGLSYYNYD-MYDPENRPIDQ--QQLHREY 57
             M  A++   + +   +T   +  W +P+L+A ++Y+ Y+ + DPE++P D     +   Y
Sbjct:     1 MSSAIVGAASAIGGAVTAATSNSWFIPMLMAAVAYFQYEEIIDPESKPSDVGGDDILDHY 60

Query:    58 DFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTE 117
             DF              RL+EV +W++LLLEAG DE E+TDVP +A +LQLSK DWQYKTE
Sbjct:    61 DFIVIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQLSKIDWQYKTE 120

Query:   118 PTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPY 177
             P+G +CL    GRC+WPRGKVLGGSSVLNYMLY+RG++ DYD+WE++GNP W Y D L Y
Sbjct:   121 PSGTSCLAMQGGRCNWPRGKVLGGSSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRDALYY 180

Query:   178 FKKSEDNRNPYLAKNRSLKLSNGL--------HD------VEAGQELGYENRDINGEKQT 223
             FKKSEDN N YLA N     + G         H       VEAG E+GYENRD+NGEK T
Sbjct:   181 FKKSEDNTNQYLA-NTPYHATGGYLTVGEAPYHTPLAASFVEAGVEMGYENRDLNGEKMT 239

Query:   224 GFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHG 283
             GFM+AQGT RRGSRCST+KAFLRP R R NLHI+M +HVT+I+++P TK A+GV+F++  
Sbjct:   240 GFMIAQGTTRRGSRCSTSKAFLRPARLRPNLHISMNSHVTRIMIDPVTKLAFGVEFVKDQ 299

Query:   284 IKQTVLARRE 293
                 V A +E
Sbjct:   300 KLYHVRATKE 309

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 156/303 (51%), Positives = 200/303 (66%)

Query:     6 IAFGTILKTGLTIVGTG-IWLVPVLIAGLSYYNYDMYDPENRPIDQQQLHREYDFXXXXX 64
             +A    +K    ++G G + ++P LIA ++YYNYD++DPENRP + QQ+   YDF     
Sbjct:    43 LAIAGAIKLATAVIGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVQQVGLAYDFIIIGG 102

Query:    65 XXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACL 124
                      RLSE+ HW ILLLEAG  E E++DVP L+ +L  SK DW+Y+T+P   AC 
Sbjct:   103 GSAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQ 162

Query:   125 GYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDN 184
                  RC W RGKVLGGSSVLN MLY+RGN+ D+D W   GNPGW Y+D+LPYF+KSED 
Sbjct:   163 AMKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPYFRKSEDQ 222

Query:   185 RNPYLAKNRSLKLSNGLHDVE--------------AGQELGYENRDINGEKQTGFMVAQG 230
             RNPYLA+N+    + GL  V+              AG+E+GY+  D+NGE+QTGF   Q 
Sbjct:   223 RNPYLARNKRYHGTGGLWTVQDAPYNTPIGPAFLQAGEEMGYDIVDVNGEQQTGFGFYQF 282

Query:   231 TIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLA 290
              +RRGSR STAK+FLRP R R NLH+A+ +HVTK+L +P TK+A GVQFIR G  Q V A
Sbjct:   283 NMRRGSRSSTAKSFLRPARLRPNLHVALFSHVTKVLTDPHTKRATGVQFIRDGRLQNVYA 342

Query:   291 RRE 293
              RE
Sbjct:   343 TRE 345

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 139/270 (51%), Positives = 178/270 (65%)

Query:    39 DMYDPENRPIDQQQLHREYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDV 98
             D  DPEN+  +   + R+YDF              RLSEV +W++LLLEAG DE E++DV
Sbjct:   278 DPVDPENKVQEPTVIRRQYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDV 337

Query:    99 PSLAAWLQLSKFDWQYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
             P+LA +LQL++ DW+Y+T P  T + C      RC WPRGKVLGGSSVLN M+YVRG++ 
Sbjct:   338 PALAGYLQLTELDWKYQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKN 397

Query:   157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSN-------------GLHD 203
             DY+HW SLGNPGW YD +L YF KSED RNPYLAK    +                 +  
Sbjct:   398 DYNHWASLGNPGWDYDSMLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAPWRTPLSIAF 457

Query:   204 VEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVT 263
             ++AG E+GYENRDING +QTGFM+ Q TIRRG+RCST KAF+RPVR+RKN  + + A  T
Sbjct:   458 LQAGIEMGYENRDINGAQQTGFMLTQSTIRRGARCSTGKAFIRPVRQRKNFDVLLHAEAT 517

Query:   264 KILVNPATKKAYGVQFIRHGIKQTVLARRE 293
             +IL +   K+A GV+++R G K  V  RRE
Sbjct:   518 RILFDKQ-KRAIGVEYMRGGRKNVVFVRRE 546

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 124/280 (44%), Positives = 165/280 (58%)

Query:    28 VLIAGLSYYNYDMYDPENRPIDQQQ-LHREYDFXXXXXXXXXXXXXXRLSEVAHWSILLL 86
             VL   +++      D E    D    L  EYDF              RLSE   W +LLL
Sbjct:    30 VLFETINFLRRGQADVELENYDNNVILDSEYDFIVVGAGTAGCALAARLSENPQWRVLLL 89

Query:    87 EAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLN 146
             EAG  E  V DVP +A +LQL + +W+Y+T+P+  ACL  N  RC+WPRGKV+GGSSVLN
Sbjct:    90 EAGGPERLVMDVPIVAHFLQLGEMNWKYRTQPSDHACLAMNNNRCNWPRGKVMGGSSVLN 149

Query:   147 YMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNP-----YLAKNRSLKLS--- 198
             YM+Y RGNR DYD WE+LGNPGW + DVLPYFKK E +  P     Y+ +N  +K+S   
Sbjct:   150 YMMYTRGNRRDYDRWEALGNPGWSFKDVLPYFKKYEGSSVPDAEEDYVGRNGPVKVSYVN 209

Query:   199 --NGLHD--VEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVR-KRKN 253
               + + +  V+A Q+ G + RD NG  Q G      T R  +R S+ +A+L P++ KR N
Sbjct:   210 WRSKIAEAFVDAAQQDGLKYRDYNGRIQNGVAFLHTTTRNSTRWSSNRAYLYPLKGKRSN 269

Query:   254 LHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARRE 293
             LH+   A VTK+L++P TK AYG+     G  Q +LAR+E
Sbjct:   270 LHVRKNALVTKVLIDPQTKTAYGIMVQTEGRMQKILARKE 309

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 116/262 (44%), Positives = 166/262 (63%)

Query:    45 NRPIDQQQLHREYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAW 104
             NR  D  +   EYDF              RLSE++  S+LLLEAG  E  ++DVP  AA 
Sbjct:    36 NRIPDTTRFLPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAGDQETFISDVPLTAAL 95

Query:   105 LQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL 164
              Q+++++W YK EPT  AC G   G C+WP+G+ +GG+S++N+MLY RG+R DYD W + 
Sbjct:    96 TQMTRYNWGYKAEPTEHACQGLKGGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAA 155

Query:   165 GNPGWGYDDVLPYFKKSED------NRNPYLAKNRSLKL------SNGLHD-VEAGQELG 211
              N GW YD++LPYF+KSE        ++PY  +N  L +      S  L   +++G+E+G
Sbjct:   156 NNSGWSYDELLPYFRKSERIGIPELYKSPYHGRNGQLDVQYTDYRSQLLKAFLKSGREMG 215

Query:   212 YENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPAT 271
             YE  D NGE   GF  +Q TIR G RCST+KAF++PV  RKNLHI+M++ VT+++++P T
Sbjct:   216 YEITDPNGEHLMGFARSQATIRNGRRCSTSKAFIQPVVNRKNLHISMKSWVTRLIIDPIT 275

Query:   272 KKAYGVQFIRHGIKQTVLARRE 293
             K A GV+F++   +  V AR+E
Sbjct:   276 KTATGVEFVKQRQRYVVRARKE 297

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 122/271 (45%), Positives = 159/271 (58%)

Query:    39 DMYDPENRPIDQ--QQLHREYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVT 96
             D+ DP  R   +   +   EYDF              RLSEV  W +LL+EAG DE    
Sbjct:    45 DLEDPCGRASSRFRSEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGA 104

Query:    97 DVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
              +PS+      S  D++Y TEP   ACL   + RC WPRGKVLGG+SVLN M+YVRGNR 
Sbjct:   105 QIPSMFLNFIGSDIDYRYNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNRE 164

Query:   157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRN------PYLAKNRSLKLSNGLHD------- 203
             DYD W + GNPGW Y+DVLP+FKKSEDN +       Y AK   L +    ++       
Sbjct:   165 DYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEYHAKGGLLPVGKFPYNPPLSYAI 224

Query:   204 VEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVT 263
             ++AG+ELG+   D+NG+  TGFM+AQ T R G R S+A+AFLRP R R NLHI +    T
Sbjct:   225 LKAGEELGFSVHDLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTAT 284

Query:   264 KILVNPATKKAYGVQFI-RHGIKQTVLARRE 293
             KIL++P TK   GV+   + G  + +L ++E
Sbjct:   285 KILIHPHTKNVLGVEVSDQFGSTRKILVKKE 315

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 120/266 (45%), Positives = 158/266 (59%)

Query:    42 DPENRPIDQQQ-LHREYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPS 100
             D EN  +D+ Q +  +YDF              RLSE   W +LLLEAG  EN   D+P 
Sbjct:    48 DLEN--LDEGQVITTKYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPI 105

Query:   101 LAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDH 160
             +A  LQL + +W+YKTEP+   CL  N  RC+WPRGKV+GGSSVLNYM+Y RGNR DYD 
Sbjct:   106 VAHLLQLGEINWKYKTEPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDR 165

Query:   161 WESLGNPGWGYDDVLPYFKKSEDNRNP-----YLAKNRSLKLSNG-----LHD--VEAGQ 208
             W  LGNPGW Y++VLPYFKK E +  P      + +N  +K+S       + D  V A Q
Sbjct:   166 WARLGNPGWSYEEVLPYFKKYEGSVVPDADENLVGRNGPVKVSYSETRTRIADAFVGATQ 225

Query:   209 ELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVR-KRKNLHIAMRAHVTKILV 267
             + G    D NG+KQ      Q  I   +R S+ +A+L P++ KR+NLH+   A VTKIL+
Sbjct:   226 DAGLPRGDYNGDKQIRVSYLQANIYNETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILI 285

Query:   268 NPATKKAYGVQFIRHGIKQTVLARRE 293
             +P TK A+G+     G  Q +LAR+E
Sbjct:   286 DPQTKSAFGIIVKMDGKMQKILARKE 311

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 119/296 (40%), Positives = 165/296 (55%)

Query:    16 LTIVGTGIWLVPVLIAGLSYYNYDMYDPENR--PIDQQQLHREYDFXXXXXXXXXXXXXX 73
             L  +G    ++ +L  G+     D+ D ++R   I  + L   YDF              
Sbjct:    14 LLTLGPSAMIILLLNKGILEQRPDIVDEQHRVRSIHIEDLRESYDFIVIGGGSAGCVLAA 73

Query:    74 RLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSW 133
             RLSE   WS+LLLEAG DE  + D+P L    Q S +DW+Y TEP+ R CL     RC W
Sbjct:    74 RLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKYLTEPSDRYCLAMEDQRCFW 133

Query:   134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNR------NP 187
             PR KVLGG S +N M+Y+RGNR DYD W +LGNPGW YD++L YF+K ED R      +P
Sbjct:   134 PRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNILHYFRKLEDMRVPGFEHSP 193

Query:   188 YLAKNRSLKLS-----NGLHDV--EAGQELG--YENRDINGEKQTGFMVAQGTIRRGSRC 238
             Y      + +      + L D+   A Q+LG  + + D NG  QTGF    G++R G RC
Sbjct:   194 YHGHGGPISVERYRFPSPLLDIFMRAAQQLGMVHPDGDFNGRSQTGFAPPHGSLRDGLRC 253

Query:   239 STAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGI-KQTVLARRE 293
             S  K ++R   +R NL I ++A V +I+++P + +A GV F  +G+ K TV A+RE
Sbjct:   254 SANKGYIRRSWQRPNLDIVLKAFVERIVIDPQSHRAIGVIF-EYGLLKHTVRAKRE 308

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 110/263 (41%), Positives = 143/263 (54%)

Query:    45 NRPIDQQQLHREYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAW 104
             N P       R YDF              RLSE  +WS+ L+EAG  EN V  VP LAA 
Sbjct:    39 NVPFFSDVPQRNYDFIIVGGGAAGCTLAARLSENPNWSVFLIEAGGVENIVHQVPLLAAH 98

Query:   105 LQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL 164
             LQ +  +W Y + P   AC G    +C+ PRGKVLGG+S +NYM+Y RGNR D+D W + 
Sbjct:    99 LQSTASNWGYNSTPQRHACRGMPDNKCALPRGKVLGGTSSINYMIYNRGNRRDFDAWAAA 158

Query:   165 GNPGWGYDDVLPYFKKSED------NRNPYLAKNRSLKLSNGLHD-------VEAGQELG 211
             GNPGW YD+VLPYF +SE         +PY   +  L + +  H        + A QE G
Sbjct:   159 GNPGWSYDEVLPYFLRSEHAQLQGLEHSPYHNHSGPLSVEDVRHRTRLAHAYIRAAQEAG 218

Query:   212 YENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRK-NLHIAMRAHVTKILVNPA 270
             +   D NGE Q G    Q T  +G R S  +A++ P+R R+ NLHI   A VT++L++ A
Sbjct:   219 HPRTDYNGESQLGVSYVQATTLKGRRHSAFRAYIEPIRSRRHNLHILTLARVTRVLIDAA 278

Query:   271 TKKAYGVQFIRHGIKQTVLARRE 293
             TK AYGV+    G    V AR+E
Sbjct:   279 TKSAYGVELTHQGRSFKVKARKE 301

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.99	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	310
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	2e-75
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	8e-56
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	3e-55
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	3e-36
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	1e-32
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	2e-06
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	0.004

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  240 bits (615), Expect = 2e-75
 Identities = 114/260 (43%), Positives = 145/260 (55%), Gaps = 31/260 (11%)

Query: 55  REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDENE--VTDVPS-LAAWLQLSKF 110
            EYD+I+IG GSAG V+A+RLSE    S+LLLEAG PD        +P+ LA  LQ  ++
Sbjct: 4   MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRY 63

Query: 111 DWQYKTEP----TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-G 165
           +W Y+TEP      R        R   PRGKVLGGSS +N M+Y+RGN  DYD+W  L G
Sbjct: 64  NWAYETEPEPHMNNR--------RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPG 115

Query: 166 NPGWGYDDVLPYFKKSEDNR---NPY------LAKNRSLKLSNGLHD--VEAGQELGYE- 213
             GW Y D LPYFKK+E      + Y      L+  R    +N L    VEAG + GY  
Sbjct: 116 LEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPR 175

Query: 214 NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKK 273
             D+NG +Q GF     T+  G R S A+A+L P  KR NL I   A   +IL     K+
Sbjct: 176 TDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--KR 233

Query: 274 AYGVQFIRHGIKQTVLARRE 293
           A GV++ R G ++T  ARRE
Sbjct: 234 AVGVEYERGGGRETARARRE 253

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  188 bits (480), Expect = 8e-56
 Identities = 101/258 (39%), Positives = 138/258 (53%), Gaps = 23/258 (8%)

Query: 54  HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPSLAAWLQLSKF-D 111
             EYD++++G GSAG+V+A+RLS+    S+L+LEAG  D   +  +P+  A+L      D
Sbjct: 5   KMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYD 63

Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWG 170
           W ++TEP     L   +    WPRGKVLGGSS +N M+YVRG+  D+D W    G PGW 
Sbjct: 64  WGFRTEPEPH--LRGRELA--WPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWP 119

Query: 171 YDDVLPYFKKSEDNRNPYLAKNRSLKLSNG-LHD-------------VEAGQELGYE-NR 215
           YDDVLPYFK++ED         R+     G L               +EAG++LG+    
Sbjct: 120 YDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTP 179

Query: 216 DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAY 275
           D NG  Q GF     TI  G R S A+A+L+P  KR NL +   A V +IL+        
Sbjct: 180 DPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGDRAVGV 239

Query: 276 GVQFIRHGIKQTVLARRE 293
            V+    G  +T +A RE
Sbjct: 240 EVEIGDGGTIETAVAARE 257

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  187 bits (476), Expect = 3e-55
 Identities = 101/252 (40%), Positives = 137/252 (54%), Gaps = 22/252 (8%)

Query: 58  DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PD--ENEVTDVPSLAAW-LQLSKFDWQ 113
           D+I+IGGGSAG+V+A RLSE    S+L+LEAG  D   + +  +P+  A+     +++W 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHW-ESLGNPGWGYD 172
           Y+TEP        N  R    RGKVLGGSS +N M+Y RGN  DY+ W +  G   W Y 
Sbjct: 61  YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116

Query: 173 DVLPYFKKSEDN---RNPYLAKNRSLKLSNGLHD-------VEAGQELGYE-NRDINGEK 221
           D LPY+K+ E       PY   +  +K+  G  D       +EAG E GY    D+NG +
Sbjct: 117 DCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFR 176

Query: 222 QTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR 281
           Q GF     T+  G R S A+A+L P  KR NL +  RA VTKI       +A GV+F +
Sbjct: 177 QEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGVEFKK 234

Query: 282 HGIKQTVLARRE 293
            G K+   A +E
Sbjct: 235 GGRKEHTEANKE 246

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score =  128 bits (325), Expect = 3e-36
 Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 16/176 (9%)

Query: 127 NQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNR 185
           N  R   P G  +GG S +N+   +R      D W S  G  GWGYDD LPY  K E   
Sbjct: 15  NGRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGP- 73

Query: 186 NPYLAKNRSLKLSNGLHDV--EAGQELGYE----NRDINGEKQTGFMVAQGTIRRGSRCS 239
              L         + L+    +A +ELGY      R+ NG    GF         G++ S
Sbjct: 74  ---LGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGLG--CPTGAKQS 128

Query: 240 TAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH--GIKQTVLARRE 293
           TA+ +LRP  +R NL I   A   KI++     +A GV+      GIK+ + A +E
Sbjct: 129 TARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKRLITAAKE 183

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  125 bits (315), Expect = 1e-32
 Identities = 82/257 (31%), Positives = 118/257 (45%), Gaps = 34/257 (13%)

Query: 58  DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPS-LAAWLQL-----SKFD 111
           D +V+GGGSAG VVA+RLSE    ++ +LEAGP   + + +P+ L   L+L     S   
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGY 171
           W+Y  E T        +   +  RG+VLGGS  +N   + R    D+D W     PGW +
Sbjct: 62  WRYGVELTDGP-----RRASAIVRGRVLGGSGAVNGGYFCRALPADFDAW---PIPGWSW 113

Query: 172 DDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGY-ENRDIN 218
           DDVLP+F+  E + +            P         +S       A    G+    D+N
Sbjct: 114 DDVLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGISAAFVA--AALGAGFGWIADLN 171

Query: 219 G---EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAY 275
           G   +  TG       +  G R STA A+L P  KR NL +     V +IL +     A 
Sbjct: 172 GSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFSGTR--AV 229

Query: 276 GVQFIRHGIKQTVLARR 292
           GV+ +  G  +T+ A R
Sbjct: 230 GVEVLGDGGPRTLRADR 246

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 71/261 (27%), Positives = 104/261 (39%), Gaps = 46/261 (17%)

Query: 54  HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG--PDENEVTDVPSLAAWLQLSKFD 111
              YD+IV+GGG+AG  +A+ LS+  ++S+LLLE G  P  N      S      +   D
Sbjct: 53  DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANV---SFLENFHIGLAD 107

Query: 112 WQYKTEPTGRACLGYNQGRCSW-----PRGKVLGGSSVLNYMLYVRGN-RFDYDHWESLG 165
               T PT  +     Q   S       R +VLGG + +N   Y R + RF       + 
Sbjct: 108 ----TSPTSAS-----QAFISTDGVINARARVLGGGTCINAGFYSRASTRF-------IQ 151

Query: 166 NPGWGYDDVLPYFKKSEDN--RNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQT 223
             GW    V   +   E      P +A  ++  L + L +V      G+    + G K  
Sbjct: 152 KAGWDAKLVNESYPWVERQIVHWPKVAPWQAA-LRDSLLEVGVSPFNGFTYDHVYGTK-- 208

Query: 224 GFMVAQGTI--RRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK--KAYGVQF 279
                 GTI    G R  TA   L        L + + A V KI+ + + K  +A GV F
Sbjct: 209 ----VGGTIFDEFGRR-HTAAELLAAGNPN-KLRVLLHATVQKIVFDTSGKRPRATGVIF 262

Query: 280 IRH--GIKQTVLARREELEVI 298
                   Q  L+  +  E+I
Sbjct: 263 KDENGNQHQAFLSNNKGSEII 283

Length = 587

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 58  DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPS 100
           D +++GGG  G  +A  L+      + L+EA P          
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFD 43

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG1238|consensus	623		100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PLN02785	587	Protein HOTHEAD	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.88
PRK07121	492	hypothetical protein; Validated	99.73
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.72
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.71
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.71
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.7
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.69
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.67
PRK06175	433	L-aspartate oxidase; Provisional	99.64
PRK08274	466	tricarballylate dehydrogenase; Validated	99.64
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.62
PRK07395	553	L-aspartate oxidase; Provisional	99.62
PRK07804	541	L-aspartate oxidase; Provisional	99.61
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.61
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.61
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.6
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.6
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.6
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.59
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.58
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.58
PLN02815	594	L-aspartate oxidase	99.58
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.57
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.57
PRK12839	572	hypothetical protein; Provisional	99.57
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.56
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.56
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.55
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.55
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.55
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.54
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.54
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.54
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.53
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.53
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.53
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.53
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.52
PRK07512	513	L-aspartate oxidase; Provisional	99.52
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.52
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.51
PRK08071	510	L-aspartate oxidase; Provisional	99.51
PRK08275	554	putative oxidoreductase; Provisional	99.51
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.51
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.5
PRK09077	536	L-aspartate oxidase; Provisional	99.48
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.48
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.45
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.44
PLN02661	357	Putative thiazole synthesis	99.43
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.42
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.42
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.42
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.42
COG2081	408	Predicted flavoproteins [General function predicti	99.42
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.42
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.41
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.41
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.4
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.4
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.4
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.39
PRK08401	466	L-aspartate oxidase; Provisional	99.38
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.37
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.37
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.34
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.33
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.33
COG0579	429	Predicted dehydrogenase [General function predicti	99.33
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.31
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.31
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.3
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.3
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.3
PRK10157	428	putative oxidoreductase FixC; Provisional	99.26
PRK05257	494	malate:quinone oxidoreductase; Validated	99.26
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.25
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.24
PRK10015	429	oxidoreductase; Provisional	99.22
KOG2820|consensus	399		99.22
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.22
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.2
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.18
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.18
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.18
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.15
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.14
PLN02985	514	squalene monooxygenase	99.14
PRK06185	407	hypothetical protein; Provisional	99.14
KOG0042|consensus	680		99.14
COG3573	552	Predicted oxidoreductase [General function predict	99.13
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.12
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.08
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.04
KOG1298|consensus	509		99.04
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.02
PRK08244	493	hypothetical protein; Provisional	99.02
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.01
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.01
PRK06126	545	hypothetical protein; Provisional	98.99
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.97
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.97
KOG2415|consensus	621		98.95
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.95
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.95
PRK07045	388	putative monooxygenase; Reviewed	98.95
PRK06184	502	hypothetical protein; Provisional	98.94
KOG2404|consensus	477		98.93
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.93
KOG2844|consensus	856		98.93
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.91
PRK06847	375	hypothetical protein; Provisional	98.91
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.9
KOG2852|consensus	380		98.9
PLN02697	529	lycopene epsilon cyclase	98.89
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.88
PRK11445	351	putative oxidoreductase; Provisional	98.88
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.88
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.88
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.86
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.86
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.85
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.85
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.85
PRK09126	392	hypothetical protein; Provisional	98.84
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.84
PRK07588	391	hypothetical protein; Provisional	98.84
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.84
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.82
PRK08013	400	oxidoreductase; Provisional	98.81
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.81
PRK06834	488	hypothetical protein; Provisional	98.81
KOG4254|consensus	561		98.8
PRK07190	487	hypothetical protein; Provisional	98.79
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.78
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.77
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.77
PLN02463	447	lycopene beta cyclase	98.77
PRK07538	413	hypothetical protein; Provisional	98.76
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.75
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.74
PRK08163	396	salicylate hydroxylase; Provisional	98.74
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.73
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.72
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.72
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.71
PRK06753	373	hypothetical protein; Provisional	98.7
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.69
PRK07236	386	hypothetical protein; Provisional	98.68
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.65
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.64
PTZ00367	567	squalene epoxidase; Provisional	98.64
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.61
PRK06996	398	hypothetical protein; Provisional	98.6
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.6
PRK05868	372	hypothetical protein; Validated	98.6
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.6
KOG2665|consensus	453		98.6
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.6
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.58
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.57
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.54
KOG2853|consensus	509		98.53
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.52
PRK08294	634	phenol 2-monooxygenase; Provisional	98.49
PRK06475	400	salicylate hydroxylase; Provisional	98.49
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.49
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.48
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.47
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.44
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.39
PRK06116	450	glutathione reductase; Validated	98.36
PTZ00058	561	glutathione reductase; Provisional	98.35
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.34
PRK06370	463	mercuric reductase; Validated	98.32
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.31
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.28
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.28
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.25
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.22
KOG2960|consensus	328		98.22
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.22
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.22
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.2
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.2
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.2
PRK07208	479	hypothetical protein; Provisional	98.2
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.19
KOG1335|consensus	506		98.19
KOG1399|consensus	448		98.18
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.18
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.18
KOG2311|consensus	679		98.18
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.16
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.16
KOG0029|consensus	501		98.15
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.13
TIGR02053	463	MerA mercuric reductase. This model represents the	98.12
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.11
PTZ00052	499	thioredoxin reductase; Provisional	98.11
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.11
PLN02546	558	glutathione reductase	98.1
PRK14694	468	putative mercuric reductase; Provisional	98.09
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.09
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.08
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.08
PRK09897	534	hypothetical protein; Provisional	98.07
PRK07233	434	hypothetical protein; Provisional	98.07
PLN02268	435	probable polyamine oxidase	98.07
PRK13748	561	putative mercuric reductase; Provisional	98.06
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.06
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.06
PLN02576	496	protoporphyrinogen oxidase	98.05
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.05
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.05
PLN02507	499	glutathione reductase	98.03
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.94
PRK14727	479	putative mercuric reductase; Provisional	97.92
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.89
PLN02568	539	polyamine oxidase	97.89
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.88
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.88
PRK10262	321	thioredoxin reductase; Provisional	97.88
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.88
COG3349	485	Uncharacterized conserved protein [Function unknow	97.87
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.84
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.84
KOG0405|consensus	478		97.83
PLN02676	487	polyamine oxidase	97.82
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.82
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.82
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.8
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.77
KOG2614|consensus	420		97.77
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.76
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.75
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.74
PRK12831	464	putative oxidoreductase; Provisional	97.73
KOG2403|consensus	642		97.69
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.66
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.65
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.6
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.59
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.58
PRK07846	451	mycothione reductase; Reviewed	97.58
PLN02529	738	lysine-specific histone demethylase 1	97.58
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.57
KOG4716|consensus	503		97.56
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.55
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.55
PLN02612	567	phytoene desaturase	97.54
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.5
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.49
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.47
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.44
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.44
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.44
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.43
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.43
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.43
PLN02852	491	ferredoxin-NADP+ reductase	97.42
KOG0685|consensus	498		97.42
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.41
PLN02487	569	zeta-carotene desaturase	97.37
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.33
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.27
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.19
PLN03000	881	amine oxidase	97.19
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.18
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.18
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.18
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.16
KOG3855|consensus	481		97.1
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.09
TIGR02053	463	MerA mercuric reductase. This model represents the	97.09
PTZ00188	506	adrenodoxin reductase; Provisional	97.09
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.08
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.07
PLN02976	1713	amine oxidase	97.06
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.04
PRK06370	463	mercuric reductase; Validated	97.01
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.01
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.01
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.95
PRK10262	321	thioredoxin reductase; Provisional	96.93
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.88
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.87
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.86
PRK13984	604	putative oxidoreductase; Provisional	96.83
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.79
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.75
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.73
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.73
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.67
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.64
KOG1276|consensus	491		96.63
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.61
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.61
PRK12831	464	putative oxidoreductase; Provisional	96.5
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.49
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.43
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.39
PRK06116	450	glutathione reductase; Validated	96.37
KOG1439|consensus	440		96.34
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.32
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.28
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.15
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.15
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.14
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.1
KOG1800|consensus	468		96.08
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.99
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.98
KOG4405|consensus	547		95.95
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.78
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.69
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.62
KOG2755|consensus	334		95.55
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.52
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.4
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.35
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	95.22
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.22
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.21
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.21
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.16
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.03
KOG0404|consensus	322		94.71
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.63
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.56
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.53
COG4716	587	Myosin-crossreactive antigen [Function unknown]	94.32
KOG1336|consensus	478		94.18
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.17
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.13
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.12
KOG0399|consensus	2142		94.12
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.04
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	93.95
KOG3851|consensus	446		93.89
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.8
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	93.76
PRK07846	451	mycothione reductase; Reviewed	93.73
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	93.68
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.67
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.6
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.6
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.59
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.47
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	93.24
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	93.17
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.16
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.12
PRK13512	438	coenzyme A disulfide reductase; Provisional	93.09
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	93.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.95
KOG3923|consensus	342		92.94
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.93
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	92.81
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.73
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	92.72
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	92.7
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.7
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	92.62
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.43
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	92.39
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.3
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	92.12
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	91.86
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.85
PLN02507	499	glutathione reductase	91.85
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	91.82
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	91.81
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	91.78
PRK04148	134	hypothetical protein; Provisional	91.77
PTZ00153	659	lipoamide dehydrogenase; Provisional	91.76
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.69
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.64
PRK06719	157	precorrin-2 dehydrogenase; Validated	91.63
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.55
PTZ00058	561	glutathione reductase; Provisional	91.52
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	91.51
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	91.47
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	91.3
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	91.29
PRK13748	561	putative mercuric reductase; Provisional	91.24
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.22
PLN02546	558	glutathione reductase	91.12
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	91.07
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	90.88
PLN02487	569	zeta-carotene desaturase	90.85
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.82
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.81
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.69
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	90.64
PRK14727	479	putative mercuric reductase; Provisional	90.63
PRK14694	468	putative mercuric reductase; Provisional	90.51
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	90.41
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.32
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.23
PRK12770	352	putative glutamate synthase subunit beta; Provisio	90.21
PRK10669	558	putative cation:proton antiport protein; Provision	90.12
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.11
PTZ00052	499	thioredoxin reductase; Provisional	90.08
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	90.07
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.07
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.01
PRK12548	289	shikimate 5-dehydrogenase; Provisional	89.96
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	89.96
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	89.94
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	89.79
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	89.74
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.62
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	89.59
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.43
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	89.39
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	89.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.21
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	89.18
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.0
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	88.99
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.94
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	88.93
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	88.72
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	88.6
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.33
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.03
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	88.02
PRK07208	479	hypothetical protein; Provisional	88.01
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.88
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.87
PTZ00082	321	L-lactate dehydrogenase; Provisional	87.79
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	87.71
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	87.67
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	87.41
PLN02612	567	phytoene desaturase	87.26
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	87.19
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	87.16
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	87.03
PRK11730	715	fadB multifunctional fatty acid oxidation complex	86.99
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.72
PRK08328	231	hypothetical protein; Provisional	86.65
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	86.63
PRK06223	307	malate dehydrogenase; Reviewed	86.6
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	86.5
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	86.42
PRK08017	256	oxidoreductase; Provisional	86.38
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	86.33
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	86.27
KOG2495|consensus	491		86.25
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	86.19
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	86.12
COG0281	432	SfcA Malic enzyme [Energy production and conversio	86.11
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	86.09
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	85.97
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	85.88
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.79
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	85.77
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	85.58
KOG2018|consensus	430		85.58
PRK07417	279	arogenate dehydrogenase; Reviewed	85.55
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.4
PRK09496	453	trkA potassium transporter peripheral membrane com	85.35
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	85.25
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	85.18
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	85.15
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	84.96
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	84.83
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	84.74
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	84.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	84.65
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	84.49
PRK08306	296	dipicolinate synthase subunit A; Reviewed	84.48
PRK06153	393	hypothetical protein; Provisional	84.42
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	84.34
PRK06057	255	short chain dehydrogenase; Provisional	84.34
PRK07326	237	short chain dehydrogenase; Provisional	84.32
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	84.31
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	84.12
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	84.03
PLN02494	477	adenosylhomocysteinase	83.8
PRK08177	225	short chain dehydrogenase; Provisional	83.78
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	83.58
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	83.54
PRK06720	169	hypothetical protein; Provisional	83.5
PRK07067	257	sorbitol dehydrogenase; Provisional	83.34
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	83.32
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.31

>KOG1238|consensus

Probab=100.00  E-value=7.8e-55  Score=405.83  Aligned_cols=266  Identities=53%  Similarity=0.874  Sum_probs=245.3

Q ss_pred             CCCCCCCCCCcc--cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccc
Q psy17311         40 MYDPENRPIDQQ--QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTE  117 (310)
Q Consensus        40 ~~~~~~~~~~~~--~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~  117 (310)
                      ...+.+.+.+..  +...+||+||||||.|||++|.+|+|++.|+|||||+|+.++...++|.....++.+.++|.|.++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~  118 (623)
T KOG1238|consen   39 LVDPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTE  118 (623)
T ss_pred             ccCcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCc
Confidence            344555554433  356789999999999999999999999999999999999998889999888899999999999999


Q ss_pred             cCCcccCCCCCCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCC
Q psy17311        118 PTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKL  197 (310)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~  197 (310)
                      |+..+|+.+.++.|.|||||+|||+|.+|+|+|.|++.+|||.|.+.|++||+|+++++||+|+|+...+.....+|| +
T Consensus       119 Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~-~  197 (623)
T KOG1238|consen  119 PSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYH-G  197 (623)
T ss_pred             cChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCccc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999987777777788 7


Q ss_pred             CCCh--------------hHHHHHHHcCCCCCCCCCCCCccceecccccCCCcccchhhhhhhcccC-CCCcEEecCcEE
Q psy17311        198 SNGL--------------HDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRK-RKNLHIAMRAHV  262 (310)
Q Consensus       198 ~~g~--------------~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~-~~g~~v~~~~~V  262 (310)
                      ..++              .+.++.+++|.+..|+||.++.|+...+.+.++|.|+++..+|+.++.. |+|+++..++.|
T Consensus       198 ~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~v  277 (623)
T KOG1238|consen  198 AGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAV  277 (623)
T ss_pred             cCCcceeccccccCchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceE
Confidence            7666              7778889999777999999999999999999999999999999999887 889999999999


Q ss_pred             EEEEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEecc-CCchhhh
Q psy17311        263 TKILVNPATKKAYGVQFIRH-GIKQTVLARREELEVIS-FRTTTLS  306 (310)
Q Consensus       263 ~~I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG-~~s~~ll  306 (310)
                      ++|++|+.+.++.||++.++ ++.++++|+|+|||||| ++||+||
T Consensus       278 trvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLL  323 (623)
T KOG1238|consen  278 TRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLL  323 (623)
T ss_pred             EEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHH
Confidence            99999998899999999988 89999999999999999 9999996

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.7e-40  Score=320.93  Aligned_cols=244  Identities=44%  Similarity=0.715  Sum_probs=198.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC---CCCcchhhhHHhh-hcCCCCCccccccCCcccCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE---NEVTDVPSLAAWL-QLSKFDWQYKTEPTGRACLGYNQG  129 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~---~~~~~~p~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~  129 (310)
                      ..+|||||||||++|+++|.+|+|++|++|||||+|+..   ......|...... ..+.++|.|.+.|+.    ...++
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~----~~~~~   78 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP----HMNNR   78 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC----CCCCC
Confidence            357999999999999999999999559999999999753   2233455433322 345678999888876    45567


Q ss_pred             ccccCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCC--------
Q psy17311        130 RCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNG--------  200 (310)
Q Consensus       130 ~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g--------  200 (310)
                      .+.|++|+++||+|.+|+|.+.|+++.||+.|.+. |+++|+|++++|||+++|+.....   ..+| +..+        
T Consensus        79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~---~~~~-g~~gp~~~~~~~  154 (560)
T PRK02106         79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGE---DDYR-GGDGPLSVTRGK  154 (560)
T ss_pred             eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCC---cccc-CCCCCEEEeCCC
Confidence            88999999999999999999999999999999877 889999999999999999876321   1122 2111        


Q ss_pred             -------hhHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCC
Q psy17311        201 -------LHDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK  272 (310)
Q Consensus       201 -------~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~  272 (310)
                             ..+.++++++|++. .+.++....|+..+..++.+|.|.++..+||.++.++.|++|++++.|++|+++  ++
T Consensus       155 ~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~  232 (560)
T PRK02106        155 PGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GK  232 (560)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CC
Confidence                   25677888999987 567766677888777788899999999999988777899999999999999999  78


Q ss_pred             eEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        273 KAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       273 ~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +++||++.+.+....+.+.|+|||||| ++||+||.
T Consensus       233 ~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl  268 (560)
T PRK02106        233 RAVGVEYERGGGRETARARREVILSAGAINSPQLLQ  268 (560)
T ss_pred             eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHh
Confidence            999999987655555556679999997 99999984

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=4.9e-40  Score=315.96  Aligned_cols=240  Identities=40%  Similarity=0.667  Sum_probs=196.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC---CCcchhhhHHh-hhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN---EVTDVPSLAAW-LQLSKFDWQYKTEPTGRACLGYNQGRCSW  133 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  133 (310)
                      ||||||||.+|+++|.+|+|+++.+|||||+|+...   .....|..... +..+.++|.|.+.|+.    ...++.+.|
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~   76 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP----HMNNRRVGH   76 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC----CCCCceEee
Confidence            899999999999999999998447999999997532   23344543332 2245678999888877    556778999


Q ss_pred             CCcccccccccccCeeeecCCccchhhHHh-cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCCh-----------
Q psy17311        134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL-----------  201 (310)
Q Consensus       134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~-~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~-----------  201 (310)
                      ++|+++||+|.+|+|+|.|+++.||+.|.+ .|.++|+|++++|||++.|+.....   .++| +..|+           
T Consensus        77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~---~~~~-g~~G~~~v~~~~~~~~  152 (532)
T TIGR01810        77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE---KPYR-GHDGPIKVRRGPADNP  152 (532)
T ss_pred             ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC---cccC-CCCCCEEEecCCCCCH
Confidence            999999999999999999999999999987 7889999999999999999876421   1233 33332           


Q ss_pred             ---hHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEE
Q psy17311        202 ---HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGV  277 (310)
Q Consensus       202 ---~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV  277 (310)
                         .+.++++++|++. .+.++....+++.+...+..|.|.++..+|+.++.++.|++|+++++|++|+++  +++++||
T Consensus       153 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~GV  230 (532)
T TIGR01810       153 LFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGV  230 (532)
T ss_pred             HHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEEEE
Confidence               5677888999987 566666667888777778889999999999988777899999999999999998  8899999


Q ss_pred             EEEECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        278 QFIRHGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       278 ~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      ++.+++...++.+.|+||+||| ++||+||.
T Consensus       231 ~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl  261 (532)
T TIGR01810       231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQ  261 (532)
T ss_pred             EEEeCCcEEEEEEeeeEEEccCCCCCHHHHH
Confidence            9987655556666679999998 89999985

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=1.6e-40  Score=297.25  Aligned_cols=247  Identities=34%  Similarity=0.558  Sum_probs=185.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhh-HHhhhcCCCCCccccccCCcccCCCCCCccccCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSL-AAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPR  135 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  135 (310)
                      |||||||||.+|+++|.+|+++++++|||||+|+........+.. ........++|.+.+.++.    ...++.+.|++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence            899999999999999999999855899999999876654422211 2223345678888777766    67788889999


Q ss_pred             cccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCCC----C--------CCCCCCCChh
Q psy17311        136 GKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAK----N--------RSLKLSNGLH  202 (310)
Q Consensus       136 g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~~----~--------~~~~~~~g~~  202 (310)
                      |+++||+|.+|+|++.|+++.||+.|... |.++|+|+++.+||+++|....+....    .        .+. ......
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~  155 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYP-SPMNQA  155 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCH-CTHHHH
T ss_pred             ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCC-CHHHHH
Confidence            99999999999999999999999999875 788899999999999999665432100    0        000 111126


Q ss_pred             HHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE
Q psy17311        203 DVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR  281 (310)
Q Consensus       203 ~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~  281 (310)
                      +.++++++|++. .+.+.....|++.....++.|.|.++..+||.++.++.|++|+++++|++|+++.++++++||++.+
T Consensus       156 ~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~  235 (296)
T PF00732_consen  156 LMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD  235 (296)
T ss_dssp             HHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE
T ss_pred             HHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee
Confidence            777888999984 5666666666666555689999999999999888888899999999999999875589999999997


Q ss_pred             C-Ce-EEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        282 H-GI-KQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       282 ~-g~-~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      . +. ...+.+.|+|||||| ++||+||..
T Consensus       236 ~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~  265 (296)
T PF00732_consen  236 NDGGVQRRIVAAKEVILAAGAIGTPRLLLR  265 (296)
T ss_dssp             TTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred             cCCcceeeeccceeEEeccCCCCChhhhcc
Confidence            4 33 344555579999998 999999853

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-39  Score=309.10  Aligned_cols=248  Identities=40%  Similarity=0.662  Sum_probs=207.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC-CcchhhhHHhhhcC-CCCCccccccCCcccCCCCCCc
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE-VTDVPSLAAWLQLS-KFDWQYKTEPTGRACLGYNQGR  130 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~  130 (310)
                      +..+||+||||+|++|+++|.+|++ +|.+|+|||+|+.... ...+|.....+... ..+|.|.++++.    .+.++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~   78 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE   78 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence            3468999999999999999999995 6999999999976443 45667666666655 889999999988    788899


Q ss_pred             cccCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCCC-CCCCCCCCCh-------
Q psy17311        131 CSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAK-NRSLKLSNGL-------  201 (310)
Q Consensus       131 ~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~g~-------  201 (310)
                      +.|++|+++||+|.+|+|+|.|+.+.||+.|... |.++|.|++++|||+++|+........ ..+| +..+|       
T Consensus        79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~-g~~gp~~~~~~~  157 (542)
T COG2303          79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWH-GGGGPLPVSPPR  157 (542)
T ss_pred             ccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCc-CCCCCccccCCC
Confidence            9999999999999999999999999999999664 779999999999999999866542221 2234 33333       


Q ss_pred             -------hHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCe
Q psy17311        202 -------HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKK  273 (310)
Q Consensus       202 -------~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~  273 (310)
                             .+.++.+++|++. .++++..+.|++.++.++.+|.|+++..+||.++.+++|++|++++.|++|+++  ++|
T Consensus       158 ~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r  235 (542)
T COG2303         158 SPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDR  235 (542)
T ss_pred             CchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCe
Confidence                   5666778899987 678888888999888887899999999999999899999999999999999999  999


Q ss_pred             EEEEEEEECCe--EEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        274 AYGVQFIRHGI--KQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       274 v~GV~~~~~g~--~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      ++||++..++.  .....+.++|||||| ++||+||..
T Consensus       236 ~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~  273 (542)
T COG2303         236 AVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL  273 (542)
T ss_pred             eEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh
Confidence            99999986432  344455569999997 999999753

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=2.7e-32  Score=262.73  Aligned_cols=233  Identities=24%  Similarity=0.306  Sum_probs=168.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSW  133 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  133 (310)
                      +.+|||||||+|.+||++|.+|++  +.+|||||+|+.+.....++.. ..+....++|.|.+.++.    ...++.+.|
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~-~~~~~~~~d~~~~~~~q~----~~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFL-ENFHIGLADTSPTSASQA----FISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhH-HhhCCcccccCCcccccc----ccCCCceec
Confidence            457999999999999999999999  4899999999854322222221 122345578999888876    455778999


Q ss_pred             CCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcCCC
Q psy17311        134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYE  213 (310)
Q Consensus       134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~~  213 (310)
                      +|||+|||+|.+|+|.|.|+++.||+.      .||+|+++.+||++.|+.........++     ...+++++++.|++
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~a~~e~G~~  194 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVHWPKVAPW-----QAALRDSLLEVGVS  194 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccccCCCcChH-----HHHHHHHHHHcCCC
Confidence            999999999999999999999999963      6899999999999998753211001111     12788889999997


Q ss_pred             C-CCCCCCCCccceeccccc--CCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCC--CeEEEEEEEE-CCeEEE
Q psy17311        214 N-RDINGEKQTGFMVAQGTI--RRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPAT--KKAYGVQFIR-HGIKQT  287 (310)
Q Consensus       214 ~-~~~~~~~~~g~~~~~~~~--~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~--~~v~GV~~~~-~g~~~~  287 (310)
                      . .........|... ..+.  ..|.|.++.. ++ +.+++.|++|++++.|++|++++.+  ++++||++.+ +|+.++
T Consensus       195 ~~n~~~~d~~~G~~~-g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~  271 (587)
T PLN02785        195 PFNGFTYDHVYGTKV-GGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQ  271 (587)
T ss_pred             ccCCCCCCCccceee-eEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEE
Confidence            4 2111111111111 1122  4577877665 44 5677899999999999999998421  4899999986 565444


Q ss_pred             E----EcCeEEEEecc-CCchhhhh
Q psy17311        288 V----LARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       288 i----~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +    +++|+||+||| ++||+||.
T Consensus       272 ~~~~~~~~~eVILsAGai~sP~lL~  296 (587)
T PLN02785        272 AFLSNNKGSEIILSAGAIGSPQMLL  296 (587)
T ss_pred             EEeecccCceEEecccccCCHHHHH
Confidence            3    26689999997 99999974

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.88  E-value=3e-21  Score=183.25  Aligned_cols=236  Identities=13%  Similarity=0.059  Sum_probs=142.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCc-------------chhhhH----HhhhcC-----------
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT-------------DVPSLA----AWLQLS-----------  108 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~-------------~~p~~~----~~~~~~-----------  108 (310)
                      |||||||+|++|+++|+.|+++ |.+|+|||++.......             +...+.    ..++..           
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT   79 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence            7999999999999999999998 99999999987654210             001110    001110           


Q ss_pred             --CCCCccccccCCcccCCC-----CCCcc-ccCCcccccccccccCeeeecCCccchhhHHhcCCCCC--CcCChHHHH
Q psy17311        109 --KFDWQYKTEPTGRACLGY-----NQGRC-SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW--GYDDVLPYF  178 (310)
Q Consensus       109 --~~~w~~~~~~~~~~~~~~-----~~~~~-~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw--~~~~~~~~~  178 (310)
                        .-.|+..... .....+.     ....+ .-.+-+.+||+|.+|++.+.|+++.+. .|  .+ .+|  +|+++.|||
T Consensus        80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~PyY  154 (544)
T TIGR02462        80 LDPTAWSASIES-FFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWDRLY  154 (544)
T ss_pred             CCccccccCCCc-ceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHHHHH
Confidence              1112211000 0000000     00111 133567999999999999999999642 12  22 589  899999999


Q ss_pred             HHhhhcCCCCCCCCCCCCCCCChhHHH-HHHHc-CC-CCCCCCCCCCccceecccccCCCcccchhhhhhhccc----CC
Q psy17311        179 KKSEDNRNPYLAKNRSLKLSNGLHDVE-AGQEL-GY-ENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVR----KR  251 (310)
Q Consensus       179 ~~~e~~~~~~~~~~~~~~~~~g~~~~~-~~~~~-G~-~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~----~~  251 (310)
                      .++|++......  .|.+........+ ..+++ |. .+.  .  ....+...  .|..+.+++...+.+..+.    ++
T Consensus       155 ~~Ae~~~gv~g~--~~~~~~~~~~~~~~~~~~~~g~~~~~--~--~PlA~~~~--~c~~~ak~s~~~t~~~~~~~~~~~~  226 (544)
T TIGR02462       155 TKAESLIGTSTD--QFDESIRHNLVLRKLQDEYKGQRDFQ--P--LPLACHRR--TDPTYVEWHSADTVFDLQPNDDAPS  226 (544)
T ss_pred             HHHHHHhCCCCC--cCCCcccchhHHHHHHHHhccccccc--c--Cchhhhcc--CCCccceecCCccchhhhhhhhccC
Confidence            999998775432  1220100012222 22333 22 110  0  01111110  2334455554333343322    47


Q ss_pred             CCcEEecCcEEEEEEEcCCC-CeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        252 KNLHIAMRAHVTKILVNPAT-KKAYGVQFIR--HGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       252 ~g~~v~~~~~V~~I~~~~~~-~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      .|++|++++.|++|+.++++ ++|+||++.+  +++.++++|+ .||||+| ++|||||-
T Consensus       227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL  285 (544)
T TIGR02462       227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILV  285 (544)
T ss_pred             CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHH
Confidence            78999999999999998533 6899999986  6888899998 6777775 99999984

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK07121 hypothetical protein; Validated

Probab=99.73  E-value=1.3e-16  Score=152.53  Aligned_cols=64  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD  308 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~  308 (310)
                      .|...+++.|++|+++++|++|+.++ +++|+||++.++++.+.++|++.||+|+| + +++.++++
T Consensus       182 ~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~~  247 (492)
T PRK07121        182 PLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVAR  247 (492)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHHH
Confidence            34455677899999999999999874 57999999987777778999557888886 4 45665544

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.72  E-value=7.1e-17  Score=155.75  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=47.3

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CC-chhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FR-TTTLSR  307 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~-s~~ll~  307 (310)
                      ..+++.|++|+++++|++|+.+  +++|+||.+..+++.+.|+|+|.||||+| |. ++++++
T Consensus       225 ~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        225 AGVLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHHHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence            4456689999999999999987  78999998887777788999878888885 64 455544

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.71  E-value=7.2e-17  Score=154.68  Aligned_cols=64  Identities=20%  Similarity=0.347  Sum_probs=49.8

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD  308 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~  308 (310)
                      .++.++.++.|++|+++++|++|+.+  +++|+||++..+++.++|+|+|.||+|+| + +++.++++
T Consensus       178 ~l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~  243 (513)
T PRK12837        178 RFLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRAR  243 (513)
T ss_pred             HHHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHH
Confidence            34444445579999999999999998  88999999887787889999877888885 6 45555543

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.71  E-value=1.1e-16  Score=155.25  Aligned_cols=63  Identities=19%  Similarity=0.304  Sum_probs=51.0

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~  308 (310)
                      |.+.+++.|++|+++++|++|+.|+ +++|+||.+.++++.++|+|++.||||+| | ++++++++
T Consensus       219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~  283 (584)
T PRK12835        219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE  283 (584)
T ss_pred             HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence            4455677899999999999999975 68999999987888888999877888875 5 55766654

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.70  E-value=1.6e-15  Score=145.28  Aligned_cols=59  Identities=19%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEecc-CC-chhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVIS-FR-TTTLS  306 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~~-s~~ll  306 (310)
                      |...+++.|++++++++|++|+.+  +++|+||.+.. +++...++|+ .||+|+| +. ++.++
T Consensus       196 L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~  257 (506)
T PRK06481        196 LLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMI  257 (506)
T ss_pred             HHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHH
Confidence            334456689999999999999877  78999998875 4456678996 6666664 54 34443

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.69  E-value=3e-16  Score=151.60  Aligned_cols=62  Identities=18%  Similarity=0.297  Sum_probs=49.4

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~  308 (310)
                      |.+.+++.|++|+++++|++|+.+  +++|+||++..+++.+.|+|++.||||+| + ++++++++
T Consensus       214 l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~~  277 (557)
T PRK12844        214 MLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRKR  277 (557)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHHH
Confidence            434567789999999999999998  78999999987787888999777788774 5 44555543

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.67  E-value=7.2e-16  Score=144.40  Aligned_cols=55  Identities=16%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE--ECCeEEEEEcCeEEEEecc-CCc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLARREELEVIS-FRT  302 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~--~~g~~~~i~A~k~VIlaaG-~~s  302 (310)
                      |.+.+++.|++|+++++|++|+.+  +++|+||++.  .+++.++|+|+ .||+|+| +..
T Consensus       147 l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~  204 (417)
T PF00890_consen  147 LAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG
T ss_pred             HHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc
Confidence            444556778999999999999999  8899999999  57888999998 7777775 766

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.64  E-value=4.2e-15  Score=139.56  Aligned_cols=56  Identities=18%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CC
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      .++..+.++.|++|+++++|++|+.+  ++++.||.+.+++..+.++|+ .||+|+| +.
T Consensus       133 ~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~  189 (433)
T PRK06175        133 ILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSK-VTILATGGIG  189 (433)
T ss_pred             HHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcC-eEEEccCccc
Confidence            33433445679999999999999987  789999987766666688996 6677764 54

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.64  E-value=2.1e-15  Score=143.31  Aligned_cols=55  Identities=18%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE-ECCeEEEEEcCeEEEEecc-CCc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI-RHGIKQTVLARREELEVIS-FRT  302 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~-~~g~~~~i~A~k~VIlaaG-~~s  302 (310)
                      |...+++.|++++++++|++|+.+  +++++||.+. .+++...++|+ .||+|+| +.+
T Consensus       137 l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~  193 (466)
T PRK08274        137 LYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFES  193 (466)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECC-EEEECCCCCCC
Confidence            434556789999999999999987  7899999885 45656678886 6777775 544

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.62  E-value=7.3e-15  Score=142.28  Aligned_cols=52  Identities=8%  Similarity=0.019  Sum_probs=41.8

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      ..+.+.|+++++++.+++|+.+  +|+|+||.+.+  +++.+.++|+ .||+|+| +.
T Consensus       144 ~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  198 (566)
T PRK06452        144 ERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG  198 (566)
T ss_pred             HHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence            4345579999999999999998  89999998875  5666788996 7777774 65

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.62  E-value=7.9e-15  Score=141.42  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=41.0

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEec-cCC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      .++.|++|++++.|++|+.++++++|+||.+.+++..+.++|+ .||+|+ |+.
T Consensus       145 ~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~  197 (553)
T PRK07395        145 LQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAG-AVILATGGGG  197 (553)
T ss_pred             hhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcC-EEEEcCCCCc
Confidence            3456999999999999998732489999988877877778886 666666 553

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.61  E-value=1.4e-14  Score=139.64  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=35.4

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+.++||||||+|+||++||+++++. |.+|+||||+..
T Consensus        12 ~~~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~   50 (541)
T PRK07804         12 GWRDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAAL   50 (541)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCC
Confidence            345689999999999999999999997 999999999974

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.61  E-value=1.1e-14  Score=141.51  Aligned_cols=55  Identities=15%  Similarity=0.034  Sum_probs=42.8

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      |...+.+.|+++++++.|++|+.++ +++|+||.+.+  +++.+.|+|+ .||+|+| +.
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~  206 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKAR-ATVLATGGAG  206 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCcc
Confidence            3344556899999999999999853 68999998853  6777789996 6777774 64

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.61  E-value=1.6e-14  Score=141.10  Aligned_cols=55  Identities=9%  Similarity=0.117  Sum_probs=42.6

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      |...+++.|++|++++.|++|+.++ +++|.||.+.+  +|+.+.++|+ .||+|+ |+.
T Consensus       172 L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  229 (617)
T PTZ00139        172 LYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYG  229 (617)
T ss_pred             HHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCc
Confidence            4344566899999999999999832 78999998754  6777889997 566666 564

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.60  E-value=1.8e-14  Score=135.88  Aligned_cols=63  Identities=11%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEecc-C-Cchhhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVIS-F-RTTTLSR  307 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~-~s~~ll~  307 (310)
                      ..|.+.+++.|++|+++++|++|+.++ +++++||++.+ +++...+.++ .||+|+| + .++.+++
T Consensus       134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       134 QKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCHHHHH
Confidence            344455677899999999999999864 57899999875 4444556775 7777776 3 3344443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.60  E-value=1.3e-14  Score=140.33  Aligned_cols=36  Identities=36%  Similarity=0.545  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..++||||||+|.+|+++|++++++ |.+|+||||++
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            3579999999999999999999998 99999999987

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.60  E-value=2e-14  Score=139.64  Aligned_cols=62  Identities=18%  Similarity=0.344  Sum_probs=49.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-C-Cchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-F-RTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~-~s~~ll~~  308 (310)
                      |...+++.|++++++++|++|+.+  +++|+||.+.++++.+.+.|++.||+|+| + .+++++++
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~  290 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE  290 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence            334556789999999999999987  78999999887777778998667888885 4 44566554

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.59  E-value=2.7e-14  Score=139.55  Aligned_cols=53  Identities=9%  Similarity=0.165  Sum_probs=41.8

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      ..+.+.|++|++++.+++|+.++ +++|.||.+.+  +|+.+.|.|+ .||+|+ |+.
T Consensus       195 ~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g  250 (635)
T PLN00128        195 GQAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAH-STILATGGYG  250 (635)
T ss_pred             HHHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCc
Confidence            33456799999999999999863 57999998864  6777889997 677777 565

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.58  E-value=3.5e-14  Score=138.38  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=43.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FRT  302 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s  302 (310)
                      |...+++.|+++++++.|++|+.++ +++|+||.+.+  +|+.+.|.|+ .||+|+| +..
T Consensus       155 L~~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  213 (598)
T PRK09078        155 LYQQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR  213 (598)
T ss_pred             HHHHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence            3344556899999999999999873 48999998853  6777889996 6777774 653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.58  E-value=4.5e-14  Score=138.32  Aligned_cols=52  Identities=12%  Similarity=0.119  Sum_probs=41.9

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCCc
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFRT  302 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~s  302 (310)
                      .+++.|++|++++.|++|+.+  +++|+||.+.+  ++..+.+.|+ .||+|+ |+..
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  233 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN  233 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence            456689999999999999998  78999999875  5666788997 666666 5653

>PLN02815 L-aspartate oxidase

Probab=99.58  E-value=4.3e-14  Score=137.06  Aligned_cols=57  Identities=12%  Similarity=0.170  Sum_probs=41.1

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCC--eEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATK--KAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~--~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      +...+.++.|++|++++.+++|+.+++++  +|+||.+.+  ++..+.+.|+ .||||+ |+.
T Consensus       161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g  222 (594)
T PLN02815        161 LLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAG  222 (594)
T ss_pred             HHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCcce
Confidence            33333345699999999999999863233  499998863  6777788986 677777 464

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.57  E-value=5.4e-14  Score=136.08  Aligned_cols=60  Identities=22%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEec-cCCc-hhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI-SFRT-TTLS  306 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaa-G~~s-~~ll  306 (310)
                      |.+.+++.|++|+++++|++|+.+  +++|+||.+..+++.+.|+|++.||+|+ |+.+ +.++
T Consensus       214 L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~  275 (557)
T PRK07843        214 LRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMR  275 (557)
T ss_pred             HHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHH
Confidence            334456789999999999999988  7899999987777788899987777766 5654 4443

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.57  E-value=4.4e-14  Score=137.25  Aligned_cols=52  Identities=19%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      |.+.+++.|+++++++.|++|+.+  +++|.||...+  +++...++|+ .||+|+|
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATG  194 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAK-AVMFATG  194 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-EEEECCC
Confidence            334456679999999999999988  78999998643  6666678996 6777775

>PRK12839 hypothetical protein; Provisional

Probab=99.57  E-value=4.5e-14  Score=136.75  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCc-hhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRT-TTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s-~~ll~  307 (310)
                      |.+.+++.|++|+.++.|++|+.++ +++|+||.+.+.+...++.+.|.||+|+| +.. +.+++
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~  283 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK  283 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence            3344567899999999999999864 68999999876444456666567888885 543 44433

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.56  E-value=4e-14  Score=137.63  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      |...+++.|++|+++++|++|+.+  +++|+||.+.+.+....+++++.||+|+|
T Consensus       220 L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtG  272 (574)
T PRK12842        220 LAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACG  272 (574)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCC
Confidence            334456789999999999999998  88999999886554567888777888886

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.56  E-value=8.5e-14  Score=134.50  Aligned_cols=55  Identities=15%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      |...+++.|++|++++.|++|+.++ +++|+||.+.+  ++..+.|+|+ .||+|+| +.
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~  197 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAK-ATILATGGAG  197 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCC
Confidence            3344556899999999999999873 44699998764  6767789996 6777775 64

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.55  E-value=4.4e-14  Score=136.39  Aligned_cols=57  Identities=16%  Similarity=0.168  Sum_probs=48.7

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      .+++.|++++++++|++|..+  +++++||++.+  +++...|+|+ .||+|+|.|+.+|++
T Consensus       158 ~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~wa~~l~~  216 (546)
T PRK11101        158 DAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIWGQHIAE  216 (546)
T ss_pred             HHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECC-EEEECCChhHHHHHH
Confidence            456789999999999999988  78999999865  4555689996 899999999999875

>TIGR00551 nadB L-aspartate oxidase

Probab=99.55  E-value=1.3e-13  Score=131.69  Aligned_cols=98  Identities=13%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             hHHHHHHHcCCCCC-CCCCCCC---ccceecccccCCCc-ccchhhhhhhcccCC-CCcEEecCcEEEEEEEcCCCCeEE
Q psy17311        202 HDVEAGQELGYENR-DINGEKQ---TGFMVAQGTIRRGS-RCSTAKAFLRPVRKR-KNLHIAMRAHVTKILVNPATKKAY  275 (310)
Q Consensus       202 ~~~~~~~~~G~~~~-~~~~~~~---~g~~~~~~~~~~g~-r~s~~~~~l~~~~~~-~g~~v~~~~~V~~I~~~~~~~~v~  275 (310)
                      ..+++++++|+++. +.++...   .+....+.....+. ........|.+.+++ .|++|++++.|++|+.+  +++++
T Consensus        86 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~  163 (488)
T TIGR00551        86 SAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVV  163 (488)
T ss_pred             HHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEE
Confidence            67788889999883 2222111   11111111111111 111122233343444 79999999999999987  78999


Q ss_pred             EEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        276 GVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       276 GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ||.+.+.+....++|+ .||+|+|-++
T Consensus       164 Gv~~~~~~~~~~i~A~-~VVlAtGG~~  189 (488)
T TIGR00551       164 GVWVWNRETVETCHAD-AVVLATGGAG  189 (488)
T ss_pred             EEEEEECCcEEEEEcC-EEEECCCccc
Confidence            9988765555678886 7777776333

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.55  E-value=8.2e-14  Score=135.49  Aligned_cols=56  Identities=16%  Similarity=0.058  Sum_probs=45.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      |.+.+++.|++|+++++|++|+.+  +++|+||.+.+++..+.++|++.||+|+|-++
T Consensus       223 L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        223 LLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            345567789999999999999988  78999999887666678899568888887433

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.54  E-value=1.5e-13  Score=133.64  Aligned_cols=35  Identities=29%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||||||+|+||++||+++++. |.+|+||||++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~   37 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPV   37 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCC
Confidence            46999999999999999999997 999999999874

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.54  E-value=2.1e-13  Score=141.66  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||+|.||++||+++++. |.+|+||||++.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~  443 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAK  443 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCC
Confidence            469999999999999999999997 999999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.54  E-value=1.7e-13  Score=132.85  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             hhHHHHHHHcCCCC-CCCCCCC---CccceecccccC--CCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeE
Q psy17311        201 LHDVEAGQELGYEN-RDINGEK---QTGFMVAQGTIR--RGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKA  274 (310)
Q Consensus       201 ~~~~~~~~~~G~~~-~~~~~~~---~~g~~~~~~~~~--~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v  274 (310)
                      +..+++++++|+++ .+.++..   ..|.........  +........++...+.+..|++++.++.|++|+.+  +++|
T Consensus        89 ~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~--~g~v  166 (580)
T TIGR01176        89 PKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD--DGRV  166 (580)
T ss_pred             HHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee--CCEE
Confidence            36778889999998 3333321   111111111111  11111112223322334469999999999999998  7899


Q ss_pred             EEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        275 YGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       275 ~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      .||...+  +|+.+.++|+ .||+|+| +.
T Consensus       167 ~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~  195 (580)
T TIGR01176       167 CGLVAIEMAEGRLVTILAD-AVVLATGGAG  195 (580)
T ss_pred             EEEEEEEcCCCcEEEEecC-EEEEcCCCCc
Confidence            9998754  6777789996 7777775 53

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.53  E-value=2.5e-13  Score=132.27  Aligned_cols=53  Identities=9%  Similarity=0.048  Sum_probs=41.0

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      ..+.+.|++++.++.|++|+.++ +++|.||.+.+  +++...++|+ .||+|+| +.
T Consensus       156 ~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~  211 (591)
T PRK07057        156 QQNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAK-TTLFATGGAG  211 (591)
T ss_pred             HHHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECC-eEEECCCCcc
Confidence            44456899999999999999863 58999998853  5666788886 6777774 54

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.53  E-value=1.9e-13  Score=132.84  Aligned_cols=94  Identities=13%  Similarity=0.153  Sum_probs=57.0

Q ss_pred             hHHHHHHHcCCCCC-CCCCCC---C-ccceecccccCCCcc--cchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeE
Q psy17311        202 HDVEAGQELGYENR-DINGEK---Q-TGFMVAQGTIRRGSR--CSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKA  274 (310)
Q Consensus       202 ~~~~~~~~~G~~~~-~~~~~~---~-~g~~~~~~~~~~g~r--~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v  274 (310)
                      ..+++++++|+++. +.++..   . .|.... ........  .....+++..+.+..|+++++++.|++|+.+  +++|
T Consensus        91 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~-r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~--~g~v  167 (582)
T PRK09231         91 TEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIE-RTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD--DGHV  167 (582)
T ss_pred             HHHHHHHHcCCCcccCCCCceeeeccccccCC-eeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe--CCEE
Confidence            67788899999983 223211   1 111111 11111111  1112223323334468999999999999998  7899


Q ss_pred             EEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        275 YGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       275 ~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      .||.+.+  ++....++|+ .||+|+|
T Consensus       168 ~Gv~~~~~~~g~~~~i~Ak-aVIlATG  193 (582)
T PRK09231        168 RGLVAMNMMEGTLVQIRAN-AVVMATG  193 (582)
T ss_pred             EEEEEEEcCCCcEEEEECC-EEEECCC
Confidence            9998753  6767788996 7777775

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.53  E-value=1.2e-14  Score=132.47  Aligned_cols=59  Identities=20%  Similarity=0.180  Sum_probs=45.1

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      .|...+++.|++|+++++|++|..+  ++++.||++. +|   +++|+ .||+|+|.|+++|++.+
T Consensus       152 ~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~-~g---~i~ad-~vV~a~G~~s~~l~~~~  210 (358)
T PF01266_consen  152 ALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTS-DG---EIRAD-RVVLAAGAWSPQLLPLL  210 (358)
T ss_dssp             HHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEET-TE---EEEEC-EEEE--GGGHHHHHHTT
T ss_pred             hhHHHHHHhhhhccccccccchhhc--cccccccccc-cc---ccccc-eeEecccccceeeeecc
Confidence            3444556679999999999999999  8999999874 33   48886 89999999999987654

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.53  E-value=1.9e-13  Score=133.00  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-C
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-F  300 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~  300 (310)
                      .+..|++++.++.|++|+.+  +++++||.+.+  +++...++|+ .||+|+| +
T Consensus       148 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~  199 (577)
T PRK06069        148 LRFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGA  199 (577)
T ss_pred             HhcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchh
Confidence            34479999999999999988  78999998754  5666688996 6666664 5

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.52  E-value=2.1e-13  Score=132.59  Aligned_cols=52  Identities=10%  Similarity=0.010  Sum_probs=41.5

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      |.+.+++.|+++++++.|++|+.+  +++|+||.+.+  +++...++|+ .||+|+|
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtG  188 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAK-AVVLATG  188 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECC-eEEECCC
Confidence            334455569999999999999998  79999998864  5666788996 7777776

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.52  E-value=1.7e-13  Score=131.44  Aligned_cols=49  Identities=16%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEec-cCC
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      ++.|++++.++.|++|+.+  +++|+||.+.+++..+.++|+ .||+|+ |+.
T Consensus       148 ~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~  197 (513)
T PRK07512        148 ATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPAR-AVVLATGGIG  197 (513)
T ss_pred             hCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECC-EEEEcCCCCc
Confidence            3469999999999999887  789999998766655678997 566666 564

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.52  E-value=2.2e-13  Score=133.36  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||+|+||++||++|++. |.+|+||||++.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCC
Confidence            369999999999999999999997 999999999864

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.51  E-value=2.4e-13  Score=133.56  Aligned_cols=54  Identities=13%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      |...+.+.|++|+.++.|++|+.+  +++|.||.+.+  +|+.+.+.|+ .||+|+| +.
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g  220 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYG  220 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCccc
Confidence            334456789999999999999998  89999999875  6777788996 6666664 54

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.51  E-value=3.5e-13  Score=129.16  Aligned_cols=47  Identities=11%  Similarity=0.133  Sum_probs=38.3

Q ss_pred             CCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEec-cCC
Q psy17311        252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      .|+++++++.|++|+.+  ++++.||.+.+ +++.+.++|+ .||+|+ |+.
T Consensus       142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~  190 (510)
T PRK08071        142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCG  190 (510)
T ss_pred             cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCc
Confidence            69999999999999988  78999998876 5666688896 666666 454

>PRK08275 putative oxidoreductase; Provisional

Probab=99.51  E-value=2.6e-13  Score=131.35  Aligned_cols=56  Identities=18%  Similarity=0.144  Sum_probs=42.5

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      .|.+.+++.|++|++++.|++|+.++ ++++.||.+.+  ++....++|+ .||+|+| +.
T Consensus       142 ~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~  200 (554)
T PRK08275        142 VLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECC-EEEECCCCcc
Confidence            44454566899999999999999864 57899998754  5666778886 6777775 53

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.51  E-value=4.4e-13  Score=130.46  Aligned_cols=57  Identities=14%  Similarity=0.029  Sum_probs=42.3

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCC--CCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPA--TKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~--~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      .|...+++.|+++++++.|++|+.+++  +++|+||.+.+  +++.+.++|+ .||+|+| +.
T Consensus       145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  206 (583)
T PRK08205        145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSG  206 (583)
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCc
Confidence            344555678999999999999998721  18999998753  5666788996 6666664 54

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.50  E-value=4.9e-13  Score=130.51  Aligned_cols=175  Identities=19%  Similarity=0.183  Sum_probs=95.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSW  133 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  133 (310)
                      .++||||||+|+||++||++++++ +|.+|+||||++......                                     
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-------------------------------------   52 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-------------------------------------   52 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-------------------------------------
Confidence            368999999999999999999995 389999999986421100                                     


Q ss_pred             CCcccccccccccCeeeecCCccchhhHHh---cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHc
Q psy17311        134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWES---LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQEL  210 (310)
Q Consensus       134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~---~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~  210 (310)
                          ..+|.+.++...   ....+.+.|.+   ....++..+++...|-                  ...+..+++++++
T Consensus        53 ----~a~G~~~~~~~~---~~~ds~e~~~~d~~~~~~~~~d~~lv~~~~------------------~~s~~~i~~L~~~  107 (608)
T PRK06854         53 ----VAQGLSAINAYI---GEGETPEDYVRYVRKDLMGIVREDLVYDIA------------------RHVDSVVHLFEEW  107 (608)
T ss_pred             ----cccCcccccccc---ccCCCHHHHHHHHHHhccCCCCHHHHHHHH------------------HhHHHHHHHHHHc
Confidence                001111111111   11112222211   0111111122221111                  1123677888899


Q ss_pred             CCCCC-CCCCCCCccceecccccCCCcccchhhhhhhcccCC-CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEE
Q psy17311        211 GYENR-DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKR-KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQ  286 (310)
Q Consensus       211 G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~-~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~  286 (310)
                      |+++. +.++..... .... ....|.   .....|...+++ .|++++.+++|++|+.+  +++|+||.+.+  +++.+
T Consensus       108 Gv~f~~~~~G~~~~~-g~~~-~~~~G~---~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~  180 (608)
T PRK06854        108 GLPIWKDENGKYVRR-GRWQ-IMINGE---SYKPIVAEAAKKALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFY  180 (608)
T ss_pred             CCeeeecCCCCcccc-CCcc-CCCChH---HHHHHHHHHHHhcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEE
Confidence            99873 222211100 0000 001111   122223333444 45999999999999988  78999997643  56666


Q ss_pred             EEEcCeEEEEecc
Q psy17311        287 TVLARREELEVIS  299 (310)
Q Consensus       287 ~i~A~k~VIlaaG  299 (310)
                      .+.|+ .||+|+|
T Consensus       181 ~i~Ak-aVILATG  192 (608)
T PRK06854        181 VFKAK-AVIVATG  192 (608)
T ss_pred             EEECC-EEEECCC
Confidence            88886 6777775

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.48  E-value=5.7e-13  Score=128.48  Aligned_cols=53  Identities=11%  Similarity=0.197  Sum_probs=40.8

Q ss_pred             ccCCCCcEEecCcEEEEEEEcC----CCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNP----ATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~----~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      +.+++|++|+++++|++|+.++    ++++|+||.+.+  +++...|+|+ .||+|+| +.
T Consensus       148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~  207 (536)
T PRK09077        148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGAS  207 (536)
T ss_pred             HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCC
Confidence            3455799999999999999862    138999999864  5767788986 7777775 54

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.48  E-value=6e-13  Score=129.67  Aligned_cols=49  Identities=14%  Similarity=0.052  Sum_probs=39.1

Q ss_pred             CCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      +.|++|+++++|++|+.++ +++|+||.+.+  +++.+.+.|+ .||+|+ |+.
T Consensus       145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g  196 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSAD-AVILATGGYG  196 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCc
Confidence            4589999999999999863 57999999875  5666788997 666666 564

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.45  E-value=1.9e-12  Score=131.66  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=38.5

Q ss_pred             CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      .++.+.+++.+++|+.+  +|+|+||.+.+  +|+.+.|+|+ .||+|+ |+.
T Consensus       156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g  205 (897)
T PRK13800        156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCG  205 (897)
T ss_pred             CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEECC-EEEECCCccc
Confidence            48999999999999988  88999998754  6777889996 677777 564

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.44  E-value=1.1e-12  Score=114.69  Aligned_cols=57  Identities=14%  Similarity=0.150  Sum_probs=42.2

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----CC---eEEEEEcCeEEEEeccCCch
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----HG---IKQTVLARREELEVISFRTT  303 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----~g---~~~~i~A~k~VIlaaG~~s~  303 (310)
                      |...+.+.|++++.+++|++|..++ ++++.||.+..     .+   +...++|+ .||.|+|.++.
T Consensus       110 L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~a~  174 (257)
T PRK04176        110 LAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHDAE  174 (257)
T ss_pred             HHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCCcH
Confidence            4344566899999999999999863 44899998752     11   34578996 88888886653

>PLN02661 Putative thiazole synthesis

Probab=99.43  E-value=1.6e-12  Score=116.81  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++||+|||+|++|+++|++|++++|.+|+||||+.
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            368999999999999999999986689999999975

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.42  E-value=1.2e-12  Score=122.34  Aligned_cols=60  Identities=12%  Similarity=0.052  Sum_probs=43.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCe--EEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGI--KQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~--~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |...+++.|++++++++|++|..+  ++.++ |.+.+++.  ..+++|+ .||+|+|.|+.+|++.
T Consensus       203 l~~~a~~~G~~i~~~~~V~~i~~~--~~~~~-v~~~~~~~~~~~~i~a~-~vV~a~G~~s~~l~~~  264 (410)
T PRK12409        203 LAAACARLGVQFRYGQEVTSIKTD--GGGVV-LTVQPSAEHPSRTLEFD-GVVVCAGVGSRALAAM  264 (410)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEe--CCEEE-EEEEcCCCCccceEecC-EEEECCCcChHHHHHH
Confidence            335567789999999999999876  55543 44433321  2357886 8999999999888753

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.42  E-value=2e-12  Score=112.73  Aligned_cols=36  Identities=28%  Similarity=0.425  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+|||+|||+|++|+++|++|++. |.+|+||||...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~   55 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLA   55 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            369999999999999999999998 999999999863

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.42  E-value=1.8e-12  Score=121.84  Aligned_cols=58  Identities=12%  Similarity=0.089  Sum_probs=51.2

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      -+...|.++++.++|++++.+  ++ +.||++++  +|+.+.|+|+ .||.|+|.|+.+|++..
T Consensus       173 ~A~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGpW~d~i~~~~  232 (532)
T COG0578         173 DAAEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRAR-AVVNAAGPWVDEILEMA  232 (532)
T ss_pred             HHHhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEcC-EEEECCCccHHHHHHhh
Confidence            356789999999999999999  67 99999986  6889999996 99999999999987653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.42  E-value=4.7e-12  Score=123.06  Aligned_cols=92  Identities=15%  Similarity=0.072  Sum_probs=55.8

Q ss_pred             hhHHHHHHHcCCCCCCC--CCCCC-ccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCC-CCeEEE
Q psy17311        201 LHDVEAGQELGYENRDI--NGEKQ-TGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPA-TKKAYG  276 (310)
Q Consensus       201 ~~~~~~~~~~G~~~~~~--~~~~~-~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~-~~~v~G  276 (310)
                      +..++++.++|+++...  ++... .|.    .....+.  ......+....++.+++++.+++|++|+.+++ +|+|+|
T Consensus        91 ~~~i~~L~~~Gv~F~~~~~~G~~~~~g~----~~~~~gG--~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~G  164 (614)
T TIGR02061        91 DDSVHLFEEWGLPLWIKPEDGKYVREGR----WQIMIHG--ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAG  164 (614)
T ss_pred             HHHHHHHHHcCCCceecCCCCccccCCC----cccCcCc--hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEE
Confidence            37778888999998321  22111 110    0001111  11222233334445689999999999999731 179999


Q ss_pred             EEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        277 VQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       277 V~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      |.+.+  +++.+.|.|+ .||+|+|
T Consensus       165 v~~~~~~~g~~~~i~Ak-aVVLATG  188 (614)
T TIGR02061       165 AVGFNVRANEVHVFKAK-TVIVAAG  188 (614)
T ss_pred             EEEEEeCCCcEEEEECC-EEEECCC
Confidence            98754  6777789996 7777775

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.42  E-value=5.5e-13  Score=119.53  Aligned_cols=169  Identities=21%  Similarity=0.215  Sum_probs=97.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCccccC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWP  134 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  134 (310)
                      +.+||||||+|+||+.||..+++. |.+|+|||+++....-                                   +.  
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrK-----------------------------------il--   43 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRK-----------------------------------IL--   43 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccce-----------------------------------eE--
Confidence            468999999999999999999997 9999999999854420                                   00  


Q ss_pred             CcccccccccccCeeeecCCccchhhHH-hcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcCCC
Q psy17311        135 RGKVLGGSSVLNYMLYVRGNRFDYDHWE-SLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYE  213 (310)
Q Consensus       135 ~g~~lGGss~~n~~~~~r~~~~d~~~w~-~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~~  213 (310)
                         +-||+ ..|     -.+...++++. ..+..       . .|-++.           +. .+...+++++++.+|++
T Consensus        44 ---~sGgG-rCN-----~Tn~~~~~~~ls~~p~~-------~-~fl~sa-----------l~-~ft~~d~i~~~e~~Gi~   94 (408)
T COG2081          44 ---MSGGG-RCN-----FTNSEAPDEFLSRNPGN-------G-HFLKSA-----------LA-RFTPEDFIDWVEGLGIA   94 (408)
T ss_pred             ---ecCCC-Ccc-----ccccccHHHHHHhCCCc-------c-hHHHHH-----------HH-hCCHHHHHHHHHhcCCe
Confidence               11111 111     11222233331 11100       0 011110           00 11222888999999998


Q ss_pred             CCCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCe
Q psy17311        214 NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARR  292 (310)
Q Consensus       214 ~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k  292 (310)
                      +..-.    .|..++    ......+...+++ ..+++.|++|+++++|.+|..+  +   .+..+.. +|.  +|++++
T Consensus        95 ~~e~~----~Gr~Fp----~sdkA~~Iv~~ll-~~~~~~gV~i~~~~~v~~v~~~--~---~~f~l~t~~g~--~i~~d~  158 (408)
T COG2081          95 LKEED----LGRMFP----DSDKASPIVDALL-KELEALGVTIRTRSRVSSVEKD--D---SGFRLDTSSGE--TVKCDS  158 (408)
T ss_pred             eEEcc----CceecC----CccchHHHHHHHH-HHHHHcCcEEEecceEEeEEec--C---ceEEEEcCCCC--EEEccE
Confidence            72211    122221    1111122344444 4567899999999999999987  4   2333332 453  789986


Q ss_pred             EEEEeccCCchhhh
Q psy17311        293 EELEVISFRTTTLS  306 (310)
Q Consensus       293 ~VIlaaG~~s~~ll  306 (310)
                      .||+++|.--|++-
T Consensus       159 lilAtGG~S~P~lG  172 (408)
T COG2081         159 LILATGGKSWPKLG  172 (408)
T ss_pred             EEEecCCcCCCCCC
Confidence            66666676667553

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.42  E-value=3e-12  Score=122.73  Aligned_cols=57  Identities=18%  Similarity=0.138  Sum_probs=45.8

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      .+++.|++++.+++|++|..+  ++. .+|.+.+  +|+..+|+|+ .||+|+|.|+.+|+++
T Consensus       164 ~A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~-~VVnAaG~wa~~l~~~  222 (508)
T PRK12266        164 DAAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRAR-ALVNAAGPWVKQFLDD  222 (508)
T ss_pred             HHHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcC-EEEECCCccHHHHHhh
Confidence            356789999999999999876  554 4677664  4656789996 9999999999998764

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.41  E-value=2.2e-12  Score=123.74  Aligned_cols=184  Identities=21%  Similarity=0.230  Sum_probs=106.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCccccC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWP  134 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  134 (310)
                      .+|||||||+|.|||.||.++++. |.+|+||||.....+.+..                                    
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~------------------------------------   47 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVA------------------------------------   47 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhh------------------------------------
Confidence            579999999999999999999998 8999999998754421110                                    


Q ss_pred             CcccccccccccCeeeecCC-ccc-hh-hHHh-cCCCCC-CcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHH
Q psy17311        135 RGKVLGGSSVLNYMLYVRGN-RFD-YD-HWES-LGNPGW-GYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQE  209 (310)
Q Consensus       135 ~g~~lGGss~~n~~~~~r~~-~~d-~~-~w~~-~g~~gw-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~  209 (310)
                         ..||   +|........ +.| .+ .|.+ ....+| ..++...+|.+.                  .|..+.++++
T Consensus        48 ---a~gG---~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd~i~~~~~~------------------ap~~v~~Le~  103 (562)
T COG1053          48 ---AQGG---INAALGNTVDVEGDSPELHFYDTVKGGDGLGDQDAVEAFADE------------------APEAVDELEK  103 (562)
T ss_pred             ---hccc---ccccccCcccccCCCHHHHHHHHHhccCCcCCHHHHHHHHHh------------------hHHHHHHHHH
Confidence               1122   1222110110 101 11 1111 122334 334444444322                  3367788899


Q ss_pred             cCCCC-CCCCCC---CCccceecccccCCCcccc--hhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--
Q psy17311        210 LGYEN-RDINGE---KQTGFMVAQGTIRRGSRCS--TAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--  281 (310)
Q Consensus       210 ~G~~~-~~~~~~---~~~g~~~~~~~~~~g~r~s--~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--  281 (310)
                      .|+++ +..++.   +..|......++..+.+..  ....+.....+..+++++.+..|++|+.++ ++++.||...+  
T Consensus       104 ~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~  182 (562)
T COG1053         104 WGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLR  182 (562)
T ss_pred             hCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecC-CCcEEEEEEEEec
Confidence            99998 344431   1122222122333333322  223333333344778999999999999884 44499998764  


Q ss_pred             CCeEEEEEcCeEEEEec-cCC
Q psy17311        282 HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       282 ~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      +++.+.++++ .||+|+ |+.
T Consensus       183 ~g~~~~~~ak-avilaTGG~g  202 (562)
T COG1053         183 TGELYVFRAK-AVILATGGAG  202 (562)
T ss_pred             CCcEEEEecC-cEEEccCCce
Confidence            7888888885 666666 565

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.41  E-value=2.3e-12  Score=123.48  Aligned_cols=58  Identities=16%  Similarity=0.073  Sum_probs=46.1

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH-GIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++.|++++.+++|++|..+  ++ ..+|.+.++ |++.+++|+ .||.|+|.|+.+|++.
T Consensus       163 ~~a~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~wa~~l~~~  221 (502)
T PRK13369        163 LDAAERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRAR-ALVNAAGPWVTDVIHR  221 (502)
T ss_pred             HHHHHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEec-EEEECCCccHHHHHhh
Confidence            3456789999999999999887  44 356776653 566789996 9999999999998763

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.40  E-value=2.8e-12  Score=125.51  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=49.3

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++.|++++.+++|++|..++.++++.||++.+  +++.+.|+++ .||+|+|.|+.+|++.
T Consensus       240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaws~~l~~~  302 (627)
T PLN02464        240 CTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPFCDEVRKM  302 (627)
T ss_pred             HHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHhHHHHHHh
Confidence            44677899999999999998862136899998865  4556678986 8999999999998874

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.40  E-value=8.5e-13  Score=123.59  Aligned_cols=57  Identities=19%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |...+++.|++|+++++|++|..+  ++++.+|+.. ++   +++++ .||+|+|.|+..|++.
T Consensus       207 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~---~~~a~-~VV~a~G~~~~~l~~~  263 (416)
T PRK00711        207 LAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GG---VITAD-AYVVALGSYSTALLKP  263 (416)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-Cc---EEeCC-EEEECCCcchHHHHHH
Confidence            334556789999999999999887  6777777643 33   57886 8999999999888754

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.40  E-value=1.4e-12  Score=120.80  Aligned_cols=89  Identities=19%  Similarity=0.156  Sum_probs=47.7

Q ss_pred             hHHHHHHHcCCCCC-CCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE
Q psy17311        202 HDVEAGQELGYENR-DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI  280 (310)
Q Consensus       202 ~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~  280 (310)
                      ++++.++++|++.. ..+     |..++..    ....+.... |...+++.|++|+++++|++|..+  ++.+..|++.
T Consensus        81 d~~~ff~~~Gv~~~~~~~-----gr~fP~s----~~a~~Vv~~-L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~  148 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEED-----GRVFPKS----DKASSVVDA-LLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTK  148 (409)
T ss_dssp             HHHHHHHHTT--EEE-ST-----TEEEETT------HHHHHHH-HHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEET
T ss_pred             HHHHHHHhcCCeEEEcCC-----CEECCCC----CcHHHHHHH-HHHHHHHcCCEEEeCCEeeeeeec--CCceeEeecc
Confidence            77788889998762 212     1122111    011122333 334567789999999999999998  7888888872


Q ss_pred             ECCeEEEEEcCeEEEEeccCCchhh
Q psy17311        281 RHGIKQTVLARREELEVISFRTTTL  305 (310)
Q Consensus       281 ~~g~~~~i~A~k~VIlaaG~~s~~l  305 (310)
                       +++  .+.+++.||+++|.-.|++
T Consensus       149 -~~~--~~~a~~vILAtGG~S~p~~  170 (409)
T PF03486_consen  149 -NGG--EYEADAVILATGGKSYPKT  170 (409)
T ss_dssp             -TTE--EEEESEEEE----SSSGGG
T ss_pred             -Ccc--cccCCEEEEecCCCCcccc
Confidence             333  6888855555556555554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.39  E-value=5.6e-13  Score=123.25  Aligned_cols=34  Identities=35%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |||||||||++|+++|++|++. |++|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            7999999999999999999998 999999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.38  E-value=7.7e-12  Score=118.77  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||||||+|+||+++|++|++. |.+|+||||++
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            6999999999999999999997 99999999985

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.37  E-value=3e-12  Score=106.15  Aligned_cols=35  Identities=29%  Similarity=0.483  Sum_probs=30.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||+|||+|++|+++|++|+++ |.||+++|+..
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~   50 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL   50 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence            479999999999999999999998 99999999975

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.37  E-value=3.6e-12  Score=120.89  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      +.++||+|||+|++|+++|++|++. +|.+|+|||++..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            3469999999999999999999995 5899999999853

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.34  E-value=4.1e-12  Score=118.16  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |...+++.|++++++++|+++..+  ++++ .|+.. ++   ++.++ .||+|+|.|++.+++.
T Consensus       155 L~~~~~~~Gv~i~~~~~V~~i~~~--~~~~-~V~~~-~g---~i~ad-~vV~A~G~~s~~l~~~  210 (393)
T PRK11728        155 MAELIQARGGEIRLGAEVTALDEH--ANGV-VVRTT-QG---EYEAR-TLINCAGLMSDRLAKM  210 (393)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEec--CCeE-EEEEC-CC---EEEeC-EEEECCCcchHHHHHH
Confidence            334456789999999999999876  5543 44432 33   57886 8999999999888753

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.33  E-value=5.6e-12  Score=116.42  Aligned_cols=35  Identities=34%  Similarity=0.393  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|||||||+|++|+++|++|++. |++|+||||+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence            69999999999999999999998 999999999864

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.33  E-value=6.5e-12  Score=117.36  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=40.5

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      ..+++.|++++.+++|++|..++ ++++.+|++. +|   .+.++ .||+|+|.|++.+++
T Consensus       191 ~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~-~g---~i~a~-~vVvaagg~~~~l~~  245 (407)
T TIGR01373       191 RGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETT-RG---FIGAK-KVGVAVAGHSSVVAA  245 (407)
T ss_pred             HHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC-Cc---eEECC-EEEECCChhhHHHHH
Confidence            45677899999999999997642 5677777654 34   57886 677777767776654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.33  E-value=1.2e-11  Score=114.00  Aligned_cols=58  Identities=10%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      ..++..|+++.+|++|++|..++ +| +.-+.+ .+|++. ++|+ .||.|||..+.+|++..
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~-~~g~~~-~~ak-~Vin~AGl~Ad~la~~~  218 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQS-DG-VFVLNT-SNGEET-LEAK-FVINAAGLYADPLAQMA  218 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEe-cCCcEE-EEee-EEEECCchhHHHHHHHh
Confidence            44556699999999999999984 33 333333 355444 8885 99999999999998753

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.31  E-value=3.1e-11  Score=110.82  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             ChhHHHHHHHcCCCC-CCCCCCCCccceecccc---cC-CCcc-cchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCC-
Q psy17311        200 GLHDVEAGQELGYEN-RDINGEKQTGFMVAQGT---IR-RGSR-CSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK-  272 (310)
Q Consensus       200 g~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~---~~-~g~r-~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~-  272 (310)
                      ++..++++.+.|++| .+..+....+....+..   .. .+.. .....+++..+.+++|++|+.++.+.+|+.+  ++ 
T Consensus        89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~--~~~  166 (518)
T COG0029          89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE--DGI  166 (518)
T ss_pred             HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc--CCc
Confidence            447778899999999 44433221111111111   11 1211 1223344544556799999999999999999  66 


Q ss_pred             eEEEEEEEECC-eEEEEEcCeEEEEec-cCC
Q psy17311        273 KAYGVQFIRHG-IKQTVLARREELEVI-SFR  301 (310)
Q Consensus       273 ~v~GV~~~~~g-~~~~i~A~k~VIlaa-G~~  301 (310)
                      .+.||.+.+.+ ....++|+ .||||+ |++
T Consensus       167 ~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g  196 (518)
T COG0029         167 GVAGVLVLNRNGELGTFRAK-AVVLATGGLG  196 (518)
T ss_pred             eEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence            56699998653 57789997 566666 553

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.31  E-value=2.2e-11  Score=114.70  Aligned_cols=99  Identities=12%  Similarity=0.049  Sum_probs=57.1

Q ss_pred             hHHHHHHHcCCCCCCC-CCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE
Q psy17311        202 HDVEAGQELGYENRDI-NGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI  280 (310)
Q Consensus       202 ~~~~~~~~~G~~~~~~-~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~  280 (310)
                      ..+++++++|+++... .+....  ..... ...+. .......|...+++.|++|+++++|++|+.++++++++||...
T Consensus        89 ~~i~wl~~~Gv~f~~~~~g~~~~--~~~~~-~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~  164 (432)
T TIGR02485        89 RDLRWAFAHGVHLQPPAAGNLPY--SRRTA-FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT  164 (432)
T ss_pred             hHHHHHHhCCceeeecCCCCccc--cCcee-eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc
Confidence            6778888999887321 111000  00000 00111 1122233445567789999999999999986324789999875


Q ss_pred             ECCeEEEEEcCeEEEEecc-CC-chhhhh
Q psy17311        281 RHGIKQTVLARREELEVIS-FR-TTTLSR  307 (310)
Q Consensus       281 ~~g~~~~i~A~k~VIlaaG-~~-s~~ll~  307 (310)
                      .++  ..++|+ .||+|+| +. ++.+++
T Consensus       165 ~~~--~~i~ak-~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       165 VGT--HRITTQ-ALVLAAGGLGANRDWLR  190 (432)
T ss_pred             CCc--EEEEcC-EEEEcCCCcccCHHHHH
Confidence            333  467886 6666664 54 444444

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.30  E-value=3.2e-11  Score=114.67  Aligned_cols=59  Identities=15%  Similarity=0.020  Sum_probs=42.6

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE--ECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~--~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++.|++|+++++|++|..++ ++.+ .|.+.  +++...+++|+ .||+|||.|+.+|++.
T Consensus       186 ~~a~~~Gv~i~~~t~V~~i~~~~-~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~~s~~La~~  246 (483)
T TIGR01320       186 GYLVQNGTTIRFGHEVRNLKRQS-DGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGGGALPLLQK  246 (483)
T ss_pred             HHHHhCCCEEEeCCEEEEEEEcC-CCeE-EEEEeeccCCceEEEECC-EEEECCCcchHHHHHH
Confidence            44566799999999999998762 3333 23332  23444568886 8999999999998765

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.30  E-value=2.2e-11  Score=100.59  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-||||||+|++|++||++||++ |.||+++||.-
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~l   63 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKL   63 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhC-CceEEEEEeec
Confidence            57999999999999999999998 99999999874

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.30  E-value=2.1e-12  Score=121.35  Aligned_cols=54  Identities=11%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      ..+...+++.|++|++++.|++++.+  ++++.||.+.+.+...+|+|+ .||-|+|
T Consensus        94 ~~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A~-~~IDaTG  147 (428)
T PF12831_consen   94 AVLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRAK-VFIDATG  147 (428)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc--ccccccccccccccccccccc-ccccccc
Confidence            34555567789999999999999999  899999999863347789996 8888888

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.26  E-value=2.1e-11  Score=114.56  Aligned_cols=55  Identities=15%  Similarity=0.178  Sum_probs=41.7

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ...+|.+.+++.|++++++++|++|+.+  ++++.+|..  ++.  +++|+ .||.|.|.++
T Consensus       110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~~--~g~--~i~A~-~VI~A~G~~s  164 (428)
T PRK10157        110 FDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVEA--DGD--VIEAK-TVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEEc--CCc--EEECC-EEEEEeCCCH
Confidence            3455666667789999999999999887  677777642  343  57886 8888889865

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.26  E-value=6.8e-11  Score=112.60  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      ..|||||||||+.|+++|++|++. +|++|+||||...
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            468999999999999999999984 5899999999864

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.25  E-value=6.3e-11  Score=112.57  Aligned_cols=55  Identities=15%  Similarity=0.170  Sum_probs=42.4

Q ss_pred             cccCC----CC--cEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKR----KN--LHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~----~g--~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++    .|  ++|+++++|++|..+  ++....|.+. +|   .++|+ .||+|||.||.+|++.
T Consensus       219 ~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~-~G---~i~A~-~VVvaAG~~S~~La~~  279 (497)
T PTZ00383        219 KHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTN-RG---EIRAR-FVVVSACGYSLLFAQK  279 (497)
T ss_pred             HHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEEC-CC---EEEeC-EEEECcChhHHHHHHH
Confidence            44555    56  889999999999887  5656666543 34   58887 8999999999998875

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.24  E-value=6e-11  Score=109.21  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |||||||+|++|+++|++|++. |++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            6999999999999999999998 999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK10015 oxidoreductase; Provisional

Probab=99.22  E-value=3.5e-11  Score=113.06  Aligned_cols=55  Identities=13%  Similarity=0.103  Sum_probs=41.7

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ...+|...+++.|++++.+++|++|..+  ++++.+|..  ++  ..++|+ .||+|.|.++
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~--~~--~~i~A~-~VI~AdG~~s  164 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA--GD--DILEAN-VVILADGVNS  164 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe--CC--eEEECC-EEEEccCcch
Confidence            3445656667789999999999999887  678877753  33  368886 8999989765

>KOG2820|consensus

Probab=99.22  E-value=6.9e-11  Score=103.38  Aligned_cols=61  Identities=13%  Similarity=0.018  Sum_probs=46.9

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      .+...++..|+.++.+.+|+.+.+.+..+...+|.+++ |.  .+.|+ .+|+++|.|+.++|+.
T Consensus       158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~-gs--~Y~ak-kiI~t~GaWi~klL~~  218 (399)
T KOG2820|consen  158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTD-GS--IYHAK-KIIFTVGAWINKLLPT  218 (399)
T ss_pred             HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEecc-CC--eeecc-eEEEEecHHHHhhcCc
Confidence            34456778999999999999998764456666776663 32  35664 8999999999999985

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.22  E-value=6.9e-11  Score=110.05  Aligned_cols=38  Identities=37%  Similarity=0.741  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .+|||||||+|+||++||++|+++ |.+|+||||+..+.
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G   39 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG   39 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence            479999999999999999999998 89999999997544

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.20  E-value=4.7e-10  Score=106.40  Aligned_cols=65  Identities=11%  Similarity=0.022  Sum_probs=43.5

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEE--EECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQF--IRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~--~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      .++...+.++.|++++++++|++|..++ ++... |.+  ..+++...++|+ .||+|||.|+.+|++.+
T Consensus       188 ~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGawS~~La~~~  254 (497)
T PRK13339        188 RKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWE-VTVKDRNTGEKREQVAD-YVFIGAGGGAIPLLQKS  254 (497)
T ss_pred             HHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEE-EEEEecCCCceEEEEcC-EEEECCCcchHHHHHHc
Confidence            3444333345699999999999998763 23332 333  223433357886 99999999999988653

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.18  E-value=5e-10  Score=105.02  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=38.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV   95 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~   95 (310)
                      |+++|||||||+|.+||++|..|+++ |+|||+||+.+..++.
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~   42 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGE   42 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcc
Confidence            46789999999999999999999998 9999999999877653

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.18  E-value=1.8e-10  Score=110.53  Aligned_cols=35  Identities=40%  Similarity=0.569  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||||+||+.||+.||+. |.+|+|||+..
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence            469999999999999999999998 99999999864

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.18  E-value=6.7e-10  Score=104.00  Aligned_cols=39  Identities=33%  Similarity=0.572  Sum_probs=35.2

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++.+|||+|||||++|+++|..|++. |++|+|+||.+.
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   52 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA   52 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence            344579999999999999999999998 999999999874

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.15  E-value=1.3e-09  Score=103.81  Aligned_cols=55  Identities=13%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCC--CeEEEEEEEEC--CeEEEEEcCeEEEEecc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPAT--KKAYGVQFIRH--GIKQTVLARREELEVIS  299 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~--~~v~GV~~~~~--g~~~~i~A~k~VIlaaG  299 (310)
                      |...+++.|++|+++++|++|+.+.++  ++|+||++.++  ++...+.+++.||++.|
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnG  290 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNG  290 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence            434567889999999999999996323  78999999863  34456777789999997

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.14  E-value=1.7e-10  Score=106.91  Aligned_cols=39  Identities=33%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      +.++||||||+|++|+++|++|++. |.+|+|+|+.....
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~   40 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGG   40 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCC
Confidence            3578999999999999999999998 89999999987543

>PLN02985 squalene monooxygenase

Probab=99.14  E-value=1.8e-09  Score=103.61  Aligned_cols=36  Identities=22%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +..|||||||+|++|+++|+.|++. |++|+||||..
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~   76 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL   76 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence            3579999999999999999999998 99999999974

>PRK06185 hypothetical protein; Provisional

Probab=99.14  E-value=7e-10  Score=103.63  Aligned_cols=51  Identities=16%  Similarity=0.089  Sum_probs=41.3

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      +.+|++++.+++|+++..+  ++++.||.+..++...+++|+ .||.|.|.+|.
T Consensus       120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~S~  170 (407)
T PRK06185        120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRAD-LVVGADGRHSR  170 (407)
T ss_pred             hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEeC-EEEECCCCchH
Confidence            4469999999999999988  788888887753333578886 89999998884

>KOG0042|consensus

Probab=99.14  E-value=2.8e-11  Score=111.60  Aligned_cols=82  Identities=16%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec
Q psy17311        221 KQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI  298 (310)
Q Consensus       221 ~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa  298 (310)
                      +..|.....-+..+..|.....++-   +.+.|..+.-..+|.+|+.++ ++++.|+++++  .|+++.|+| |.||.|+
T Consensus       209 ~L~Ga~VYyDGQ~nDaRmnl~vAlT---A~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVNAT  283 (680)
T KOG0042|consen  209 NLKGAMVYYDGQHNDARMNLAVALT---AARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVNAT  283 (680)
T ss_pred             CceeEEEEecCCCchHHHHHHHHHH---HHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEeCC
Confidence            3334333333333445554444332   456899999999999999987 67999999987  799999999 4999999


Q ss_pred             cCCchhhhh
Q psy17311        299 SFRTTTLSR  307 (310)
Q Consensus       299 G~~s~~ll~  307 (310)
                      |..+-.|.+
T Consensus       284 GpfsDsIr~  292 (680)
T KOG0042|consen  284 GPFSDSIRK  292 (680)
T ss_pred             CCccHHHHh
Confidence            987877654

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=99.13  E-value=5.8e-10  Score=97.62  Aligned_cols=36  Identities=33%  Similarity=0.530  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||+|.+|+++|.+||++ |++|++||+-+.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhc-CceEEEEccccc
Confidence            479999999999999999999998 999999998653

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.12  E-value=3.9e-10  Score=111.68  Aligned_cols=34  Identities=41%  Similarity=0.645  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||||||||++|+++|++|++. |++|+|||++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            58999999999999999999998 99999999985

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.08  E-value=1e-10  Score=106.71  Aligned_cols=48  Identities=25%  Similarity=0.297  Sum_probs=36.2

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCch
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTT  303 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~  303 (310)
                      .+.+|++|+ +.+|++|..+  +++|.||.+. +|.  .++++ .||+|+| |...
T Consensus       106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~-~g~--~~~a~-~vVlaTGtfl~G  154 (392)
T PF01134_consen  106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTK-DGE--EIEAD-AVVLATGTFLNG  154 (392)
T ss_dssp             HTSTTEEEE-ES-EEEEEEC--TTEEEEEEET-TSE--EEEEC-EEEE-TTTGBTS
T ss_pred             hcCCCeEEE-EcccceEEec--CCeEEEEEeC-CCC--EEecC-EEEEecccccCc
Confidence            355899997 5799999999  8999999875 554  67886 8999998 4443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.04  E-value=2.5e-09  Score=99.47  Aligned_cols=36  Identities=31%  Similarity=0.514  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+||+|||||++|+++|+.|++. |.+|+|||+.+.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~   40 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP   40 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence            569999999999999999999998 999999999863

>KOG1298|consensus

Probab=99.04  E-value=4.1e-10  Score=100.13  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=40.9

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCc
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ++..+|+++..+ .|++|+.|  ++.|.||++.+ .|++.+..|. --|+|-|..|
T Consensus       157 a~slpNV~~eeG-tV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfS  208 (509)
T KOG1298|consen  157 AASLPNVRLEEG-TVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFS  208 (509)
T ss_pred             HhcCCCeEEeee-eHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhH
Confidence            456789999776 58999988  88999999985 5667788886 7788888554

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.02  E-value=2.3e-09  Score=99.61  Aligned_cols=32  Identities=44%  Similarity=0.712  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      |||||||||++|+++|+.|++. |.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA-GIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            7999999999999999999997 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08244 hypothetical protein; Provisional

Probab=99.02  E-value=2.7e-09  Score=102.27  Aligned_cols=35  Identities=31%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|||+|||+|++|+++|+.|++. |.+|+||||.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            48999999999999999999997 999999999864

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.01  E-value=1.4e-09  Score=103.90  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..|||||||||.+|+++|.+||++ |++|+||||....++
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence            368999999999999999999998 999999999877665

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.01  E-value=2.9e-10  Score=103.54  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=43.1

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCch
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ....|...+++.+++++.+++|+.+..+  .+.+..+.... +|+..+++|+ .||.|-|.+|.
T Consensus       113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d--~~~~~~~~~~~~~g~~~~i~ad-lvVgADG~~S~  173 (356)
T PF01494_consen  113 LDRALREEAEERGVDIRFGTRVVSIEQD--DDGVTVVVRDGEDGEEETIEAD-LVVGADGAHSK  173 (356)
T ss_dssp             HHHHHHHHHHHHTEEEEESEEEEEEEEE--TTEEEEEEEETCTCEEEEEEES-EEEE-SGTT-H
T ss_pred             HHHhhhhhhhhhhhhheeeeeccccccc--ccccccccccccCCceeEEEEe-eeecccCcccc
Confidence            4445555566678999999999999988  56665544443 5777789997 78888898883

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06126 hypothetical protein; Provisional

Probab=98.99  E-value=5.1e-09  Score=101.59  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++||+|||||++|+++|+.|++. |.+|+|+||.+
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~   40 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD   40 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            468999999999999999999998 99999999875

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.97  E-value=4.9e-09  Score=93.13  Aligned_cols=34  Identities=44%  Similarity=0.676  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |||+|||||++|+++|++|++. |.+|+||||...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence            7999999999999999999997 999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.97  E-value=5.1e-09  Score=98.86  Aligned_cols=35  Identities=37%  Similarity=0.517  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..|||||||+|++|+++|+.|++. |++|+||||..
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~   72 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL   72 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            579999999999999999999998 99999999974

>KOG2415|consensus

Probab=98.95  E-value=1.7e-09  Score=97.24  Aligned_cols=68  Identities=9%  Similarity=0.056  Sum_probs=49.8

Q ss_pred             cchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----CC-------eEEEEEcCeEEEEeccC---Cc
Q psy17311        238 CSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----HG-------IKQTVLARREELEVISF---RT  302 (310)
Q Consensus       238 ~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----~g-------~~~~i~A~k~VIlaaG~---~s  302 (310)
                      ......+|...+++.|++|+.+.-+.+++.+. ++.|.||.+.+     +|       +-..+.|+ .-|.|-|.   -|
T Consensus       182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~Ls  259 (621)
T KOG2415|consen  182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSLS  259 (621)
T ss_pred             HHHHHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchhH
Confidence            34566788888899999999999999999987 89999998864     22       12367785 66666663   34


Q ss_pred             hhhhh
Q psy17311        303 TTLSR  307 (310)
Q Consensus       303 ~~ll~  307 (310)
                      .+|+.
T Consensus       260 kqi~k  264 (621)
T KOG2415|consen  260 KQIIK  264 (621)
T ss_pred             HHHHH
Confidence            45543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.95  E-value=6.5e-09  Score=96.72  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||+|||+|++|+++|+.|++. |.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence            48999999999999999999997 999999999863

>TIGR00275 flavoprotein, HI0933 family

Probab=98.95  E-value=1.5e-09  Score=101.10  Aligned_cols=31  Identities=42%  Similarity=0.635  Sum_probs=29.1

Q ss_pred             EEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         60 IVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        60 IVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ||||+|++|+++|++|++. |.+|+||||++.
T Consensus         1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcc
Confidence            6999999999999999997 999999999874

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.95  E-value=1.1e-08  Score=95.11  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence            468999999999999999999998 999999999874

>PRK06184 hypothetical protein; Provisional

Probab=98.94  E-value=7.3e-09  Score=99.49  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++||+|||+|++|+++|+.|++. |.+|+||||.+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~   37 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPE   37 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence            68999999999999999999998 999999999864

>KOG2404|consensus

Probab=98.93  E-value=4e-09  Score=91.92  Aligned_cols=48  Identities=25%  Similarity=0.372  Sum_probs=37.3

Q ss_pred             CcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCc
Q psy17311        253 NLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       253 g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      -++|.++++|++|+.+  +++|.||++.+ +|+...+.++.+|++++||.-
T Consensus       159 ~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y  207 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY  207 (477)
T ss_pred             HHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence            4899999999999977  89999999987 566667777744444446654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.93  E-value=8.4e-09  Score=96.14  Aligned_cols=33  Identities=39%  Similarity=0.606  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||||||+|++|+++|+.|++. |.+|+||||..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence            6999999999999999999998 99999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>KOG2844|consensus

Probab=98.93  E-value=4.7e-09  Score=99.28  Aligned_cols=56  Identities=16%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTL  305 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~l  305 (310)
                      ..|...+++.|+.|+.++.|++|..+  .++..||++.. |   .|++. .||.|||+|+..+
T Consensus       191 ~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~-G---~iet~-~~VNaaGvWAr~V  246 (856)
T KOG2844|consen  191 QALARAASALGALVIENCPVTGLHVE--TDKFGGVETPH-G---SIETE-CVVNAAGVWAREV  246 (856)
T ss_pred             HHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccC-c---ceecc-eEEechhHHHHHh
Confidence            34556778899999999999999998  55566998763 3   57886 8999999999554

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.91  E-value=1.5e-08  Score=94.51  Aligned_cols=36  Identities=31%  Similarity=0.647  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccC-CCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVA-HWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g~~   91 (310)
                      .|||+|||||++|+++|+.|++.+ |++|+||||.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            389999999999999999999972 499999999863

>PRK06847 hypothetical protein; Provisional

Probab=98.91  E-value=1.2e-08  Score=94.15  Aligned_cols=36  Identities=25%  Similarity=0.448  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +..||+|||+|++|+++|+.|++. |.+|+|+|+.+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            457999999999999999999997 999999999753

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.90  E-value=2e-08  Score=97.23  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||+|||+|++|+++|+.|++. |.+|+||||.+.
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~   44 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPT   44 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            569999999999999999999998 999999999864

>KOG2852|consensus

Probab=98.90  E-value=1e-09  Score=94.13  Aligned_cols=61  Identities=11%  Similarity=0.048  Sum_probs=44.2

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      .+..+.++.||+++.+ +|.++..+  .+|+.+|-... .+..+...+. .||+|+|.||++|+..
T Consensus       153 i~sea~k~~~V~lv~G-kv~ev~dE--k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGPWTskllp~  214 (380)
T KOG2852|consen  153 ILSEAEKRGGVKLVFG-KVKEVSDE--KHRINSVPKAEAEDTIIKADVH-KIVVSAGPWTSKLLPF  214 (380)
T ss_pred             HHHHHHhhcCeEEEEe-eeEEeecc--cccccccchhhhcCceEEeeee-EEEEecCCCchhhccc
Confidence            3444556778999998 58888755  78888886552 2334455665 8999999999999764

>PLN02697 lycopene epsilon cyclase

Probab=98.89  E-value=1.8e-08  Score=96.42  Aligned_cols=34  Identities=26%  Similarity=0.464  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..|||||||+|++|+++|.+|++. |++|+|||+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~  140 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD  140 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence            469999999999999999999997 9999999975

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.88  E-value=2.5e-08  Score=93.18  Aligned_cols=34  Identities=32%  Similarity=0.673  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +|||+|||+|++|+++|+.|++. |.+|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            58999999999999999999997 99999999986

>PRK11445 putative oxidoreductase; Provisional

Probab=98.88  E-value=4.7e-08  Score=89.61  Aligned_cols=33  Identities=27%  Similarity=0.509  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |||+|||+|++|+++|..|++.  .+|+|||+.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCc
Confidence            8999999999999999999995  89999999863

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.88  E-value=3.3e-08  Score=92.19  Aligned_cols=58  Identities=19%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLS  306 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll  306 (310)
                      |.+..++.|++++++++|+++..+  ++++.+|. .++++...+.|+ .||+|+| +.+..|.
T Consensus       265 L~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~  323 (422)
T PRK05329        265 LRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV  323 (422)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence            445556789999999999999988  67777776 445666688997 6777776 7776653

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.88  E-value=1.4e-08  Score=94.42  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            47999999999999999999997 999999999863

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.86  E-value=2.7e-08  Score=92.46  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=38.7

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      +.+..+++++++++|+.+..+  ++.+. |.+..+|+  +++|+ -||.|-|.+|.
T Consensus       114 ~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~--~~~a~-llVgADG~~S~  163 (387)
T COG0654         114 ARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGE--TLDAD-LLVGADGANSA  163 (387)
T ss_pred             HhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCc--EEecC-EEEECCCCchH
Confidence            335577999999999999998  67777 66654565  78886 77777798874

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=2.7e-08  Score=96.73  Aligned_cols=55  Identities=11%  Similarity=0.028  Sum_probs=43.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      |.+.+.+.|++|+.++.+++|+.++ +|+|+||.+.+  +|+.+.|+|+ .||||+ |+.
T Consensus       132 L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  189 (570)
T PRK05675        132 LYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSK-ATVLATGGAG  189 (570)
T ss_pred             HHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecC-eEEECCCCcc
Confidence            3344567899999999999999863 68999998854  6777889997 677776 465

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.86  E-value=6.4e-08  Score=89.48  Aligned_cols=61  Identities=7%  Similarity=-0.074  Sum_probs=47.8

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC-chhhhhhc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR-TTTLSRDV  309 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~-s~~ll~~~  309 (310)
                      |...+++.|++++.+++|+++..+  ++++++|.+.+ ++...+.|+ .||+|+|.| |..|++++
T Consensus       269 L~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~-g~~~~l~AD-~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       269 LKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRN-HRDIPLRAD-HFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecC-CccceEECC-EEEEccCCCcCHHHHhhc
Confidence            334556789999999999999998  88899987643 324478898 688889988 99887653

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.85  E-value=2.2e-08  Score=93.01  Aligned_cols=35  Identities=31%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|||||||+|++|+++|..|++. |++|+|||+.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence            469999999999999999999997 99999999975

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.85  E-value=2.3e-08  Score=92.80  Aligned_cols=36  Identities=31%  Similarity=0.543  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+||||||||++|+++|+.|++. |++|+|+|+.+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence            468999999999999999999997 999999999864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.85  E-value=1.2e-08  Score=94.29  Aligned_cols=34  Identities=38%  Similarity=0.671  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ||+|||||++|+++|+.|++. |.+|+|+||.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence            899999999999999999998 9999999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK09126 hypothetical protein; Provisional

Probab=98.84  E-value=7.1e-08  Score=89.64  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|||||||+|++|+++|+.|+++ |++|+|+||.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence            59999999999999999999998 999999999875

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.84  E-value=4.3e-08  Score=90.76  Aligned_cols=33  Identities=39%  Similarity=0.604  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~   91 (310)
                      ||+|||||++|+++|+.|++. | ++|+|+||.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence            899999999999999999998 9 99999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07588 hypothetical protein; Provisional

Probab=98.84  E-value=5.1e-08  Score=90.66  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ||+|||||++|+++|+.|++. |.+|+|+||.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence            899999999999999999998 99999999985

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.84  E-value=4.3e-08  Score=90.64  Aligned_cols=33  Identities=15%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+|||||++|+++|+.|++. |++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence            7999999999999999999997 99999999975

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.82  E-value=5.3e-08  Score=94.52  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.++||+|||+|++|+++|+.|++. |.+|+||||.+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~   56 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD   56 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            3578999999999999999999997 99999999986

>PRK08013 oxidoreductase; Provisional

Probab=98.81  E-value=3.6e-08  Score=91.98  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|||+|||+|++|+++|+.|++. |++|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence            58999999999999999999997 999999999874

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.81  E-value=4.7e-08  Score=94.00  Aligned_cols=33  Identities=39%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |||||||+|.+|+.+|..+++. |.+|+|||+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence            7999999999999999999997 99999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06834 hypothetical protein; Provisional

Probab=98.81  E-value=5.1e-08  Score=93.19  Aligned_cols=35  Identities=26%  Similarity=0.540  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++||||||+|++|+++|+.|++. |.+|+||||.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            58999999999999999999998 999999999863

>KOG4254|consensus

Probab=98.80  E-value=2e-08  Score=91.22  Aligned_cols=55  Identities=25%  Similarity=0.266  Sum_probs=43.6

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ..+.+.+++.|.+|.+++.|.+|+.|  +|++.||.+. +|+  ++++ |.||--|+.|.+
T Consensus       268 ~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~-dG~--ev~s-k~VvSNAt~~~T  322 (561)
T KOG4254|consen  268 FAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA-DGT--EVRS-KIVVSNATPWDT  322 (561)
T ss_pred             HHHHHHHHhccceeeehhhhhheecc--CCeEEEEEec-CCc--EEEe-eeeecCCchHHH
Confidence            34557789999999999999999999  8999999997 454  4666 577766676543

>PRK07190 hypothetical protein; Provisional

Probab=98.79  E-value=2.9e-08  Score=94.82  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+||||||||++|+++|+.|++. |.+|+||||.+.
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCc
Confidence            358999999999999999999997 999999999864

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.78  E-value=8.3e-08  Score=89.70  Aligned_cols=34  Identities=32%  Similarity=0.561  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..|||+|||+|++|+++|+.|++. |++|+|||+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            368999999999999999999997 9999999996

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.77  E-value=1.1e-08  Score=86.04  Aligned_cols=58  Identities=16%  Similarity=0.252  Sum_probs=35.3

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhh
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLS  306 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll  306 (310)
                      ..|+...+++.+++++++++|+++..+  +++ --|++. ++  .+++|+ .||+|+| +..|++.
T Consensus        85 ~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~-~~--~~~~a~-~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   85 LDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTR-DG--RTIRAD-RVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEET-TS---EEEEE-EEEE---SSCSB---
T ss_pred             HHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEE-ec--ceeeee-eEEEeeeccCCCCcc
Confidence            357777778889999999999999998  544 334443 44  467786 8888888 4566653

...

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.77  E-value=8.8e-08  Score=90.71  Aligned_cols=38  Identities=26%  Similarity=0.404  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||||++|+++|.+|.+. |.+|+|+|+++..+
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vG   46 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVG   46 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence            468999999999999999999998 99999999987544

>PLN02463 lycopene beta cyclase

Probab=98.77  E-value=6.8e-08  Score=91.01  Aligned_cols=35  Identities=40%  Similarity=0.717  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..|||||||+|++|+++|..|++. |.+|+|||+.+
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~   61 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP   61 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence            469999999999999999999997 99999999864

>PRK07538 hypothetical protein; Provisional

Probab=98.76  E-value=5.6e-08  Score=91.10  Aligned_cols=33  Identities=27%  Similarity=0.581  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ||+|||||++|+++|+.|++. |.+|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCc
Confidence            899999999999999999998 999999999763

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.75  E-value=8.2e-08  Score=89.14  Aligned_cols=36  Identities=36%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..|||||||+|++|+++|+.|++. |.+|+|||+.+.
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~   41 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPP   41 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCC
Confidence            468999999999999999999997 999999999753

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.74  E-value=5.7e-08  Score=89.37  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE--ECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~--~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      +.++....++.|+++.++++|++|...+ ++ ---|.+.  .++....++|+ .|++.||-++=.||.+
T Consensus       185 r~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg-~W~v~~~~~~~~~~~~v~a~-FVfvGAGG~aL~LLqk  250 (488)
T PF06039_consen  185 RQLVEYLQKQKGFELHLNHEVTDIKRNG-DG-RWEVKVKDLKTGEKREVRAK-FVFVGAGGGALPLLQK  250 (488)
T ss_pred             HHHHHHHHhCCCcEEEecCEeCeeEECC-CC-CEEEEEEecCCCCeEEEECC-EEEECCchHhHHHHHH
Confidence            3344444456799999999999999984 33 2334443  35677899996 9999998778777654

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.74  E-value=6.1e-08  Score=90.21  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ...||+|||||++|+++|..|++. |.+|+|+||.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcc
Confidence            357999999999999999999997 999999999863

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.73  E-value=1.1e-07  Score=88.33  Aligned_cols=34  Identities=35%  Similarity=0.648  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +|||+|||||++|+++|+.|++. |++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            58999999999999999999997 99999999875

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.72  E-value=1.1e-07  Score=89.16  Aligned_cols=35  Identities=43%  Similarity=0.738  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|.++|.+|++. |.||+|+|+.+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~   37 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE   37 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence            579999999999999999999998 88899999985

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.72  E-value=7.1e-08  Score=82.45  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +++|||+|++|+++|+.|++. |.+|+|+|||.-
T Consensus         3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGRG   35 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCC
Confidence            799999999999999999998 999999999963

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.71  E-value=7.9e-08  Score=89.35  Aligned_cols=35  Identities=40%  Similarity=0.601  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc--CCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV--AHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~--~g~~VlllE~g   89 (310)
                      ..+||+|||+|++|+++|+.|++.  .|++|+|+||.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            368999999999999999999884  28999999995

>PRK06753 hypothetical protein; Provisional

Probab=98.70  E-value=1.6e-07  Score=86.73  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ||+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence            799999999999999999998 999999999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.69  E-value=9e-08  Score=91.26  Aligned_cols=35  Identities=40%  Similarity=0.749  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..+||+||||||++|+.+|.+|++. |++|+|+|++
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc
Confidence            3579999999999999999999998 9999999986

>PRK07236 hypothetical protein; Provisional

Probab=98.68  E-value=6.5e-07  Score=83.13  Aligned_cols=34  Identities=29%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..||||||||++|+++|+.|++. |.+|+|+||.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            58999999999999999999998 99999999975

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.65  E-value=4.6e-08  Score=91.16  Aligned_cols=35  Identities=43%  Similarity=0.592  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||+|.||+-||..+|+. |.+++||--..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~   37 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNL   37 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcCC
Confidence            469999999999999999999998 99999987543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.64  E-value=1.1e-07  Score=90.57  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.+||+||||+|++|+.+|.+|++. |++|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            3469999999999999999999998 99999999864

>PTZ00367 squalene epoxidase; Provisional

Probab=98.64  E-value=2.3e-07  Score=89.80  Aligned_cols=35  Identities=40%  Similarity=0.663  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||||++|+++|+.|++. |++|+|+||.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence            469999999999999999999997 99999999975

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=4e-07  Score=81.38  Aligned_cols=35  Identities=40%  Similarity=0.696  Sum_probs=30.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~   90 (310)
                      ..|||||||||+||++||.++++. +.+ ++++|++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            469999999999999999999998 888 77777653

>PRK06996 hypothetical protein; Provisional

Probab=98.60  E-value=3.8e-07  Score=85.08  Aligned_cols=37  Identities=27%  Similarity=0.527  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccC---CCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVA---HWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~---g~~VlllE~g~   90 (310)
                      +++|||+|||+|++|+++|+.|++.+   |++|+|+|+.+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            35799999999999999999999972   35799999975

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.60  E-value=5.9e-07  Score=87.44  Aligned_cols=55  Identities=11%  Similarity=0.069  Sum_probs=43.9

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEec-cCC
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      .|.+.+++.|++|++++.|++|+.+  +|+|+||...+  +|+...|+|+ .||||+ |+.
T Consensus       124 ~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~  181 (565)
T TIGR01816       124 TLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYG  181 (565)
T ss_pred             HHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCcc
Confidence            3445456789999999999999997  89999998854  6777889996 677777 464

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK05868 hypothetical protein; Validated

Probab=98.60  E-value=6.6e-07  Score=82.71  Aligned_cols=33  Identities=27%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ||+|||+|++|+++|+.|++. |++|+|+|+.+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence            899999999999999999997 999999999864

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.60  E-value=3.2e-07  Score=85.17  Aligned_cols=32  Identities=41%  Similarity=0.677  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ||||||||++|+++|++|++. |.+|+|||+.+
T Consensus         1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~   32 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP   32 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence            899999999999999999997 99999999975

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>KOG2665|consensus

Probab=98.60  E-value=9.4e-08  Score=83.30  Aligned_cols=38  Identities=32%  Similarity=0.541  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~   91 (310)
                      .+.||.||||+|+.|++.|.+|.- +|+.+|+||||...
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~   84 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS   84 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence            357999999999999999999975 58999999999753

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.60  E-value=1.3e-07  Score=89.39  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=41.3

Q ss_pred             hhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        240 TAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       240 ~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ....+|.+.+.+.|++++.++ |+++..++ ++.+.+|++. +|+  +++|+ -||=|+|+.+.
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~-~g~--~i~ad-~~IDASG~~s~  212 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLD-DGR--TIEAD-FFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEET-TSE--EEEES-EEEE-SGGG-C
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEEC-CCC--EEEEe-EEEECCCccch
Confidence            345667777777899999884 88888876 8889998876 343  68897 89999998664

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.58  E-value=6.1e-07  Score=84.74  Aligned_cols=33  Identities=33%  Similarity=0.700  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhc----cCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSE----VAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae----~~g~~VlllE~g~   90 (310)
                      |||||||+|++|+++|+.|++    . |.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence            799999999999999999998    6 99999999964

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.57  E-value=2.6e-07  Score=88.83  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .|+|||||++|+++|..|.|. |.+|+++||.+..++
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG   38 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGG   38 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSG
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCc
Confidence            489999999999999999997 999999999986554

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.54  E-value=9.8e-08  Score=65.68  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             EECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         61 VIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        61 VVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |||+|++|+++|++|+++ |++|+|+|+.+...+
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCc
Confidence            899999999999999998 999999999986553

...

>KOG2853|consensus

Probab=98.53  E-value=2.1e-06  Score=75.81  Aligned_cols=41  Identities=24%  Similarity=0.410  Sum_probs=34.6

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhc---cCCCeEEEEcCCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSE---VAHWSILLLEAGPDE   92 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae---~~g~~VlllE~g~~~   92 (310)
                      ..+..+||+|||+|..|+++|+-|-|   ..|.+|+|+|+....
T Consensus        82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            34568999999999999999998866   347999999998743

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.52  E-value=7.5e-07  Score=81.53  Aligned_cols=51  Identities=12%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      +..+..|++++++++|++|+++  ++.+.+|...++.   .+.++ .||+|-|-.+.
T Consensus       181 ~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~---~i~~~-~vvlA~Grsg~  231 (486)
T COG2509         181 EYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGE---EIEAD-YVVLAPGRSGR  231 (486)
T ss_pred             HHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCc---EEecC-EEEEccCcchH
Confidence            4457789999999999999999  6778888876443   67887 88888884443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.49  E-value=1.2e-06  Score=86.22  Aligned_cols=39  Identities=31%  Similarity=0.541  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |++++||+|||||++|+++|+.|++..|.+|+|||+.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            566899999999999999999999922999999999764

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.49  E-value=9.4e-07  Score=82.48  Aligned_cols=33  Identities=24%  Similarity=0.533  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|+|||||++|+++|+.|++. |++|+|+||.+.
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~   36 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQE   36 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence            799999999999999999997 999999999753

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.49  E-value=7.4e-07  Score=85.97  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=50.1

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+.+.|++|+++++|++|..+  ++++.||++.+  +|+...|+|+ .||+|+|.|+.+|++.
T Consensus       136 ~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~wa~~l~~~  196 (516)
T TIGR03377       136 LDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIWAGRIAEY  196 (516)
T ss_pred             HHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcchHHHHHh
Confidence            4456789999999999999988  88999999864  4656789996 8999999999998763

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.48  E-value=1.4e-06  Score=84.07  Aligned_cols=55  Identities=16%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC-Cchhhhh
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF-RTTTLSR  307 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~-~s~~ll~  307 (310)
                      +..|+++++++.|+++..+  ++++.+|++.+  +++..++.++ .|+++.|+ -.+.+++
T Consensus       398 ~~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~  455 (517)
T PRK15317        398 SLPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLK  455 (517)
T ss_pred             cCCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHh
Confidence            3479999999999999866  68899998874  4666689998 88999994 3344544

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.47  E-value=1.6e-06  Score=81.77  Aligned_cols=39  Identities=23%  Similarity=0.375  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCe-EEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~~~~   93 (310)
                      .+.+||+|||||.+|+++|++|.+. |.. ++++||.+...
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~G   45 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVG   45 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcC
Confidence            3579999999999999999999998 887 99999997433

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.44  E-value=1.3e-06  Score=80.79  Aligned_cols=33  Identities=39%  Similarity=0.730  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHH--hccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRL--SEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~L--ae~~g~~VlllE~g~~   91 (310)
                      ||||||+|+||+++|++|  ++. |.+|+|||+.+.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence            899999999999999999  775 999999998764

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.39  E-value=2.6e-06  Score=74.96  Aligned_cols=58  Identities=12%  Similarity=-0.098  Sum_probs=44.6

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      ...++.|+-++.+-+|.+..+.  +++|+.|.++ +.....++|+..|+++++|.|.-|..
T Consensus       266 ~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a~~~VLAsGsffskGLva  323 (421)
T COG3075         266 RQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRADFYVLASGSFFSKGLVA  323 (421)
T ss_pred             HHHHHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCChhHeeeeccccccccchh
Confidence            3456789999999999999999  8999999877 55567899984444444587866643

>PRK06116 glutathione reductase; Validated

Probab=98.36  E-value=3.7e-07  Score=86.50  Aligned_cols=35  Identities=43%  Similarity=0.685  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +.+||+||||+|++|+.+|.+|++. |++|+|+|++
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~   36 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK   36 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            3579999999999999999999998 9999999996

>PTZ00058 glutathione reductase; Provisional

Probab=98.35  E-value=1e-06  Score=85.36  Aligned_cols=35  Identities=40%  Similarity=0.581  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|..+|.+|++. |++|+|||++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            579999999999999999999998 99999999863

>TIGR02730 carot_isom carotene isomerase

Probab=98.34  E-value=4.6e-07  Score=86.91  Aligned_cols=53  Identities=28%  Similarity=0.330  Sum_probs=42.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      |.+.+++.|++|+++++|++|..+  ++++.||++. +|+  ++.|+ .||+++|.+..
T Consensus       235 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~-~g~--~~~ad-~vV~a~~~~~~  287 (493)
T TIGR02730       235 LVKGLEKHGGQIRYRARVTKIILE--NGKAVGVKLA-DGE--KIYAK-RIVSNATRWDT  287 (493)
T ss_pred             HHHHHHHCCCEEEeCCeeeEEEec--CCcEEEEEeC-CCC--EEEcC-EEEECCChHHH
Confidence            445667889999999999999998  7899999876 343  46786 78998887643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06370 mercuric reductase; Validated

Probab=98.32  E-value=6.2e-07  Score=85.34  Aligned_cols=37  Identities=38%  Similarity=0.599  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |..+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            34579999999999999999999998 99999999964

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.31  E-value=5.9e-07  Score=85.08  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence            59999999999999999999998 9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.28  E-value=7.2e-07  Score=84.36  Aligned_cols=36  Identities=31%  Similarity=0.631  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++|||||||||++|+.+|.+|++. |++|+|+|+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence            369999999999999999999998 999999999753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.28  E-value=7.3e-07  Score=84.51  Aligned_cols=34  Identities=47%  Similarity=0.710  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+||||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~   35 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK   35 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence            69999999999999999999998 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.25  E-value=1e-06  Score=83.84  Aligned_cols=33  Identities=30%  Similarity=0.579  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~   35 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR   35 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            59999999999999999999998 9999999974

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.22  E-value=1.2e-06  Score=82.82  Aligned_cols=34  Identities=38%  Similarity=0.610  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+||||||+||+++|.+|++. |.+|+|+||++
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence            69999999999999999999997 99999999975

>KOG2960|consensus

Probab=98.22  E-value=5e-07  Score=74.62  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHh-ccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLS-EVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~La-e~~g~~VlllE~g~   90 (310)
                      +.||||||+|.+|+++||..+ ++|..+|.+||..-
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV  111 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence            579999999999999999999 56889999999763

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.2e-06  Score=83.34  Aligned_cols=35  Identities=29%  Similarity=0.497  Sum_probs=32.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            369999999999999999999998 99999999863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.22  E-value=1.3e-06  Score=82.98  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .+||+||||+|++|+.+|.+|++. |++|+|+|+++..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~   40 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV   40 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence            469999999999999999999998 9999999997543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.20  E-value=1.4e-06  Score=84.78  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ...|||||||||+||+++|.+|++. |++|+|+|++..
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~   38 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF   38 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            3469999999999999999999997 999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.20  E-value=3e-05  Score=72.71  Aligned_cols=33  Identities=36%  Similarity=0.610  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~   91 (310)
                      .|+|||+|++|+++|+.|+++ | .+|+|+||.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCc
Confidence            589999999999999999998 6 69999999753

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.20  E-value=1.4e-06  Score=82.95  Aligned_cols=35  Identities=37%  Similarity=0.590  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|+.+|.+|++. |++|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence            469999999999999999999998 99999999975

>PRK07208 hypothetical protein; Provisional

Probab=98.20  E-value=1.7e-06  Score=82.68  Aligned_cols=40  Identities=28%  Similarity=0.444  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .+..||||||||++|+++|++|+++ |.+|+|+|+.+..++
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG   41 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCc
Confidence            4568999999999999999999998 999999999876554

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.19  E-value=1.8e-06  Score=79.35  Aligned_cols=37  Identities=27%  Similarity=0.587  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +|++|||||.+|+++|.+|++. |.+|+|||+.+..++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCC
Confidence            7999999999999999999997 999999999765443

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>KOG1335|consensus

Probab=98.19  E-value=2e-05  Score=70.81  Aligned_cols=36  Identities=31%  Similarity=0.542  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||++|||+|++|-++|+++++. |.+...+|+...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCc
Confidence            479999999999999999999998 999999999554

>KOG1399|consensus

Probab=98.18  E-value=1e-05  Score=75.92  Aligned_cols=38  Identities=29%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .-+++|||||++||++|..|.+. |.+|+++||.+..++
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGG   43 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGG   43 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccc
Confidence            45999999999999999999997 999999999986543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.18  E-value=1.8e-06  Score=82.88  Aligned_cols=37  Identities=30%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      -||||||||++|+++|..|+++ |++|+|+||.+.+++
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence            5999999999999999999998 999999999877654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.18  E-value=2.3e-05  Score=71.43  Aligned_cols=35  Identities=37%  Similarity=0.466  Sum_probs=27.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .||+|+||.|++++++|..|.+.+..+++.||+.+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~   36 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP   36 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence            58999999999999999999998569999999875

>KOG2311|consensus

Probab=98.18  E-value=5.9e-06  Score=75.97  Aligned_cols=35  Identities=37%  Similarity=0.577  Sum_probs=31.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ...|||||||+|.|||-+|..+|+- |.+.+||-..
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence            4679999999999999999999997 9999988754

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.17  E-value=8.9e-06  Score=73.74  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=44.9

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      +...+++.|++++.+++|++|..+  ++++.+|... +|   .++|+ .||+|+|.|+++|..
T Consensus       143 l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~-~g---~~~a~-~vV~a~G~~~~~l~~  198 (337)
T TIGR02352       143 LEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTP-SG---DVQAD-QVVLAAGAWAGELLP  198 (337)
T ss_pred             HHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcC-CC---EEECC-EEEEcCChhhhhccc
Confidence            435567789999999999999987  7888888653 33   57886 899999999988753

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.16  E-value=2e-06  Score=81.77  Aligned_cols=33  Identities=39%  Similarity=0.692  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +|||||||||++|+.+|.+|++. |++|+|||+.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            49999999999999999999997 9999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.16  E-value=1.8e-06  Score=82.45  Aligned_cols=33  Identities=33%  Similarity=0.639  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence            479999999999999999999997 999999998

>KOG0029|consensus

Probab=98.15  E-value=2.2e-06  Score=81.69  Aligned_cols=39  Identities=33%  Similarity=0.516  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...+|||||||++|++||..|.+. |.+|+|||+-+..++
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGG   52 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCc
Confidence            468999999999999999999998 999999999877654

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.13  E-value=3e-06  Score=74.34  Aligned_cols=37  Identities=24%  Similarity=0.553  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ||++|||||.+|+++|..|++. |++||+|||-+..++
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCC
Confidence            8999999999999999999998 999999999876554

>TIGR02053 MerA mercuric reductase

Probab=98.12  E-value=2.3e-06  Score=81.39  Aligned_cols=33  Identities=36%  Similarity=0.704  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ||+||||||++|+++|.+|++. |++|+|+|+++
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            7999999999999999999998 99999999965

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.11  E-value=2.6e-06  Score=75.89  Aligned_cols=33  Identities=33%  Similarity=0.552  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |||||||||++|+++|..|++. |.+|+|+|+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence            7999999999999999999997 99999999876

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.11  E-value=2.7e-06  Score=81.69  Aligned_cols=34  Identities=32%  Similarity=0.486  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..||+||||+|++|+.+|.+|++. |++|+|||++
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence            369999999999999999999998 9999999973

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.11  E-value=2.4e-06  Score=82.09  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      |.+.+++.|++|++++.|++|..+  +++++||++. +|+  .+.|+ .||+|+++
T Consensus       225 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~-~g~--~~~ad-~VI~a~~~  274 (502)
T TIGR02734       225 MAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLA-DGE--RLDAD-AVVSNADL  274 (502)
T ss_pred             HHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEEC-CCC--EEECC-EEEECCcH
Confidence            434556789999999999999988  7888899775 343  46787 68888874

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02546 glutathione reductase

Probab=98.10  E-value=2.8e-06  Score=82.33  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      .+||+||||+|++|..+|.+|++. |++|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            369999999999999999999998 999999996

>PRK14694 putative mercuric reductase; Provisional

Probab=98.09  E-value=3e-06  Score=80.72  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence            479999999999999999999998 99999999974

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.09  E-value=3.1e-06  Score=80.45  Aligned_cols=34  Identities=44%  Similarity=0.721  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+||+||||||++|+++|.+|++. |++|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            369999999999999999999997 9999999994

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.08  E-value=5.6e-05  Score=69.76  Aligned_cols=58  Identities=14%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      ..+..+..++.|++|++++.|+++..+       +|.+.++++  +|.++ .||=|||...+.+++++
T Consensus       212 ~~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~~-tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         212 SKYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPAD-TVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEecC-EEEEcCCCcCChhhhhc
Confidence            345555678899999999999999655       566654443  68886 89999999888888763

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.08  E-value=3.7e-06  Score=82.75  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +||+||||+|++|..+|.++++. |+||+|+|++
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence            79999999999999999999998 9999999975

>PRK09897 hypothetical protein; Provisional

Probab=98.07  E-value=5.2e-05  Score=72.98  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      .+|+|||+|++|+++|.+|.+. ...+|+|+|+....
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            4799999999999999999875 13589999997643

>PRK07233 hypothetical protein; Provisional

Probab=98.07  E-value=3.8e-06  Score=78.94  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +|||||||++|+++|+.|++. |++|+|||+.+..++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence            589999999999999999998 999999999987665

>PLN02268 probable polyamine oxidase

Probab=98.07  E-value=4.1e-06  Score=79.03  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +|||||||++|+++|++|.++ |.+|+|||+.+..++
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence            799999999999999999997 999999999887665

>PRK13748 putative mercuric reductase; Provisional

Probab=98.06  E-value=3.9e-06  Score=81.85  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|+++|.+|++. |.+|+|||++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            469999999999999999999998 99999999973

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.06  E-value=2e-05  Score=73.08  Aligned_cols=55  Identities=11%  Similarity=0.094  Sum_probs=40.6

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      |...+++ |++++++++|++|..+  +++ .+|++. +|.  .+.|+ .||+|+|.|++.|+.
T Consensus       141 l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~-~g~--~~~a~-~vV~a~G~~~~~l~~  195 (381)
T TIGR03197       141 LLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDA-NGE--VIAAS-VVVLANGAQAGQLAQ  195 (381)
T ss_pred             HHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeC-CCC--EEEcC-EEEEcCCcccccccc
Confidence            3355667 9999999999999876  554 344433 442  36786 899999999988865

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.06  E-value=3.9e-06  Score=79.37  Aligned_cols=36  Identities=36%  Similarity=0.435  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~~~   94 (310)
                      +|||||||++|++||++|+++ |  ++|+|+|+.+..++
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GG   39 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGG   39 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcc
Confidence            699999999999999999997 6  89999999876554

>PLN02576 protoporphyrinogen oxidase

Probab=98.05  E-value=5e-06  Score=79.78  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=35.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...+||||||||++|+++|++|+++.|.+|+|+|+.+..++
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            34689999999999999999999842799999999876654

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.05  E-value=0.00037  Score=65.27  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=39.8

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCC--CCeEEEEEEEECCeEE--EEEcCeEEEEecc
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPA--TKKAYGVQFIRHGIKQ--TVLARREELEVIS  299 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~--~~~v~GV~~~~~g~~~--~i~A~k~VIlaaG  299 (310)
                      .++..||++..+++|+.|.++..  ...|+++.+.++|+..  .+..+..|+++.|
T Consensus       216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G  271 (500)
T PF06100_consen  216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNG  271 (500)
T ss_pred             HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence            35778999999999999999753  3467788887766544  4556778888878

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.05  E-value=5.2e-06  Score=79.33  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+||+||||+|++|..+|.++++..|.+|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999999438999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02507 glutathione reductase

Probab=98.03  E-value=4.5e-06  Score=80.13  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      .+||+||||+|++|..+|.+|++. |.+|+|+|+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~   56 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL   56 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence            479999999999999999999998 999999996

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.97  E-value=7.2e-06  Score=75.69  Aligned_cols=34  Identities=41%  Similarity=0.766  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      ||||||||+||+++|++|++. +|.+|+|||+++.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999999983 5899999999864

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.94  E-value=9.3e-06  Score=77.16  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccC---CCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVA---HWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~---g~~VlllE~g~~~~~   94 (310)
                      .||+|||||++|+++|++|+++.   |.+|+|+|+.+..++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG   43 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG   43 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence            59999999999999999999952   799999999876553

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.92  E-value=1.1e-05  Score=77.16  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..||+||||+|++|..+|.+|++. |.+|+|+|+++.
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~   50 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV   50 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence            469999999999999999999998 999999999743

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.89  E-value=1.4e-05  Score=66.93  Aligned_cols=32  Identities=38%  Similarity=0.683  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ||||||||+||+.+|.+|++. +.+|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence            799999999999999999986 99999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02568 polyamine oxidase

Probab=97.89  E-value=1.5e-05  Score=76.98  Aligned_cols=39  Identities=23%  Similarity=0.464  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCC-----CeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAH-----WSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g-----~~VlllE~g~~~~~   94 (310)
                      ..+||||||+|++|+++|.+|++. |     .+|+|+|+....++
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCC
Confidence            357999999999999999999986 5     89999999887654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.88  E-value=1.8e-05  Score=81.94  Aligned_cols=39  Identities=23%  Similarity=0.477  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+||+|||||+||+++|.+|++. |.+|+|+|+++...
T Consensus       161 ~~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~G  199 (985)
T TIGR01372       161 NAHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAG  199 (985)
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence            3468999999999999999999997 99999999986544

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.88  E-value=1.2e-05  Score=76.94  Aligned_cols=33  Identities=39%  Similarity=0.679  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +||+||||+|++|..+|.+|++. |++|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            59999999999999999999998 9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.88  E-value=1.2e-05  Score=72.68  Aligned_cols=53  Identities=9%  Similarity=0.065  Sum_probs=40.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC---CeEEEEEcCeEEEEeccC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH---GIKQTVLARREELEVISF  300 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~---g~~~~i~A~k~VIlaaG~  300 (310)
                      +.+..++.|+++++++.++++.-+  ++++.+|++.+.   +...++.++ .||++.|.
T Consensus       191 ~~~~l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~  246 (321)
T PRK10262        191 LMDKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGH  246 (321)
T ss_pred             HHhhccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCC
Confidence            334556789999999999999765  556888888642   345578887 88888884

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.88  E-value=9e-05  Score=65.92  Aligned_cols=37  Identities=30%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .-++.|||+|++|+++|+.|++.  .+|+|+|++...++
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGG   44 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGG   44 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccC
Confidence            46899999999999999999996  79999999987654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=1.3e-05  Score=74.87  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      -|+|+|+|.||+++|++|+++ |++|+|+|+++..++
T Consensus         2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCc
Confidence            489999999999999999998 999999999987664

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.84  E-value=2.1e-05  Score=72.45  Aligned_cols=39  Identities=28%  Similarity=0.455  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...||||||+|.+||++|++|.++ |++|++||+.+...+
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GG   44 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGG   44 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCc
Confidence            468999999999999999999998 999999999876553

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.84  E-value=1.6e-05  Score=73.66  Aligned_cols=35  Identities=31%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -||+|||||.+|+.+|+.|++. |.+|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            4999999999999999999997 9999999987654

>KOG0405|consensus

Probab=97.83  E-value=0.00017  Score=64.20  Aligned_cols=35  Identities=34%  Similarity=0.592  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..+||+.|||+|.+|..+|.++++. |.+|.|+|..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~   52 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELP   52 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecC
Confidence            3589999999999999999999998 9999999976

>PLN02676 polyamine oxidase

Probab=97.82  E-value=2.2e-05  Score=75.17  Aligned_cols=38  Identities=34%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~~~   94 (310)
                      .+||||||+|++|+++|++|+++ |. +|+|||+.+..++
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG   64 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence            58999999999999999999998 87 6999999876554

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00034  Score=62.34  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=40.3

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCchhhh
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FRTTTLS  306 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s~~ll  306 (310)
                      +.-+|++|++|+.-++|.=|  +.+|+|..+++  +|..+.+.=. .|.+--| .-++..|
T Consensus       400 ~sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WL  457 (520)
T COG3634         400 RSLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWL  457 (520)
T ss_pred             hcCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEee-eeEEEEecccChhHh
Confidence            44589999999999999888  88999999985  5666666654 5666556 3333333

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.82  E-value=1.8e-05  Score=75.33  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhccC-----CCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVA-----HWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~-----g~~VlllE~g~~~~~   94 (310)
                      +|||||||++|+++|++|++++     |.+|+|||+.+..++
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            6999999999999999999852     479999999877654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.80  E-value=2.2e-05  Score=74.49  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +|+|||+|++|+++|++|+++ |++|+|+|+.+..++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG   36 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGG   36 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Confidence            589999999999999999998 999999999876554

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.77  E-value=3.3e-05  Score=75.89  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+..+|+|||||++|+++|+.|++. |.+|+|+||.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence            4568999999999999999999998 99999999975

>KOG2614|consensus

Probab=97.77  E-value=3e-05  Score=70.46  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      +-+|||||||++|+++|..|++. |++|+|+|+...+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPR   38 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccc
Confidence            35899999999999999999998 99999999965544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.76  E-value=2.5e-05  Score=75.40  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=40.6

Q ss_pred             CCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC-Cchhhhh
Q psy17311        251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF-RTTTLSR  307 (310)
Q Consensus       251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~-~s~~ll~  307 (310)
                      +.|+++++++.|+++.-+  ++++.+|.+.+  +++...+.++ .||++.|. -++.+++
T Consensus       400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~  456 (515)
T TIGR03140       400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLK  456 (515)
T ss_pred             CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHh
Confidence            469999999999999766  67888998875  3555678887 78888884 3334443

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.75  E-value=3.1e-05  Score=79.16  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||+|||||+||+++|++|++. |++|+|+|+.+...+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG  574 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGG  574 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCc
Confidence            358999999999999999999998 999999999865443

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.74  E-value=0.0013  Score=52.98  Aligned_cols=32  Identities=34%  Similarity=0.571  Sum_probs=27.7

Q ss_pred             EEECCChhHHHHHHHHhccC----CCeEEEEcCCCC
Q psy17311         60 IVIGGGSAGAVVASRLSEVA----HWSILLLEAGPD   91 (310)
Q Consensus        60 IVVGaG~aG~~aA~~Lae~~----g~~VlllE~g~~   91 (310)
                      .|||+|++|++++.+|.+..    ..+|.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            49999999999999999873    568999999654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.73  E-value=5.2e-05  Score=72.17  Aligned_cols=38  Identities=26%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...||+|||+|++|+++|++|++. |++|+|+|+.+...
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~G  176 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPG  176 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence            468999999999999999999998 99999999876543

>KOG2403|consensus

Probab=97.69  E-value=7.9e-05  Score=69.83  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=33.3

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..+..||.+|||+|.||+-+|..|+|. |.+|.++-+-.
T Consensus        51 ~~~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~   88 (642)
T KOG2403|consen   51 QVDHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLF   88 (642)
T ss_pred             eeeeeceeEEEeccchhhhhhhhhhhc-CceEEEEeccc
Confidence            345569999999999999999999998 99999988754

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.66  E-value=4.7e-05  Score=71.24  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=32.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~~~   94 (310)
                      -++|||||++|+++|++|.+. +  ..|.|+|+++..++
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG   39 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGG   39 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCc
Confidence            379999999999999999997 7  89999999977654

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.65  E-value=4.6e-05  Score=71.07  Aligned_cols=34  Identities=35%  Similarity=0.537  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .||+|||||.+|+.+|..|++. |.+|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence            3899999999999999999998 999999998654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.60  E-value=7.6e-05  Score=70.87  Aligned_cols=32  Identities=34%  Similarity=0.672  Sum_probs=27.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+||||+|++|..+|.++  . |.||+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~--~-g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF--A-DKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence            59999999999999887554  4 99999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.59  E-value=6.7e-05  Score=69.40  Aligned_cols=39  Identities=31%  Similarity=0.537  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..-+++|||+|++|++||..||+. |.+|.|+||.+..++
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGG  161 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGG  161 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccc
Confidence            345899999999999999999998 999999999887654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.58  E-value=7.1e-05  Score=71.45  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +++|||+|++|+++|++|++. |++|+|+|+.+..++
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG   36 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGG   36 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCc
Confidence            589999999999999999997 999999999876553

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK07846 mycothione reductase; Reviewed

Probab=97.58  E-value=8.2e-05  Score=70.59  Aligned_cols=32  Identities=34%  Similarity=0.707  Sum_probs=28.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+||||+|++|..+|.++  . |+||+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence            48999999999999998774  4 99999999864

>PLN02529 lysine-specific histone demethylase 1

Probab=97.58  E-value=0.0002  Score=71.27  Aligned_cols=39  Identities=26%  Similarity=0.426  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .+.||+|||+|++|+++|..|++. |.+|+|+|+.+..++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG  197 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGG  197 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcC
Confidence            468999999999999999999998 999999999765543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.57  E-value=0.00011  Score=69.73  Aligned_cols=37  Identities=32%  Similarity=0.405  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ..+||+|||+|++|+++|..|++. |++|+|+|+.+..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~  168 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP  168 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            468999999999999999999997 9999999997654

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG4716|consensus

Probab=97.56  E-value=7.1e-05  Score=66.29  Aligned_cols=35  Identities=34%  Similarity=0.554  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..||.||||+|++|+++|-+++.. |.||.+||--.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~   52 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVK   52 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecc
Confidence            579999999999999999999998 99999999753

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.55  E-value=0.00011  Score=70.25  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+||+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~G  179 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIG  179 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence            457999999999999999999997 99999999987554

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.55  E-value=7.6e-05  Score=70.96  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++||||+|++|+++|.+|++. |.+|+|+|++..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence            799999999999999999997 999999999754

>PLN02612 phytoene desaturase

Probab=97.54  E-value=9.9e-05  Score=72.00  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..||+|||+|.+|+++|++|++. |++|+|+|+.+..++
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG  130 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGG  130 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCC
Confidence            47999999999999999999998 999999999765443

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.50  E-value=0.00013  Score=73.18  Aligned_cols=39  Identities=26%  Similarity=0.472  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...||||||||++|+++|++|++. |.+|+|+|+....++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GG  275 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGG  275 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCC
Confidence            468999999999999999999997 999999999876543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.49  E-value=0.00011  Score=75.53  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+|+|||||+||+++|+.|++. |++|+|+|+.+...+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG  343 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGG  343 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCc
Confidence            57999999999999999999998 999999999876554

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.47  E-value=0.00013  Score=68.28  Aligned_cols=41  Identities=24%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |+++|||||+|.|..-+.+|..|++. |+|||.||+++..++
T Consensus         1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG   41 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence            56899999999999999999999998 999999999988775

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.44  E-value=0.00016  Score=73.00  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...||+|||||+||+++|..|++. |++|+|+|+.+...
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            457999999999999999999998 99999999965443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.44  E-value=0.00014  Score=74.22  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..-+|+|||||+||+++|+.|++. |++|+|+|+.+...+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG  576 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGG  576 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCc
Confidence            356999999999999999999998 999999999865543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.44  E-value=0.00014  Score=75.23  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||||+||+++|..|++. |++|+|+|+.+...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCc
Confidence            357999999999999999999998 99999999987554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.43  E-value=0.00026  Score=50.16  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=31.2

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ++|||+|..|+-+|..|++. |.+|.|||+.+...
T Consensus         2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence            79999999999999999997 99999999997533

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.43  E-value=0.00017  Score=71.68  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+..+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~G  363 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIG  363 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            357999999999999999999998 99999999986544

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.43  E-value=0.00016  Score=68.87  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |+||||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            899999999999999999998 99999999875

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.42  E-value=0.00021  Score=68.08  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~~~~   94 (310)
                      ...+|+|||||+||+.+|..|++ ..|++|+|+|+.+.+.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG   65 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence            35689999999999999999986 23899999999987654

>KOG0685|consensus

Probab=97.42  E-value=0.00017  Score=66.71  Aligned_cols=40  Identities=33%  Similarity=0.472  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...-|||||||+||++||.+|-++...+|+|+|+.+..++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            4568999999999999999999886778999999887664

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.41  E-value=0.0002  Score=68.11  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~g  176 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAG  176 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCC
Confidence            357999999999999999999998 99999999987543

>PLN02487 zeta-carotene desaturase

Probab=97.37  E-value=0.00027  Score=68.64  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+|+|||+|++|+++|++|++. |++|+|+|+.+..++
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG  112 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGG  112 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCC
Confidence            36999999999999999999998 999999999876553

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.33  E-value=0.0002  Score=72.40  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      +|+|||||++|+++|+.|++. +|++|+|+||.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999995 3899999999874

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.27  E-value=0.00033  Score=69.52  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~G  229 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAG  229 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence            357999999999999999999998 99999999986543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.19  E-value=0.00049  Score=65.60  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||+|++|+++|..|++. |.+|+++|+.+...
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~g  177 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIG  177 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence            457999999999999999999997 99999999987543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN03000 amine oxidase

Probab=97.19  E-value=0.00045  Score=69.49  Aligned_cols=39  Identities=18%  Similarity=0.388  Sum_probs=35.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...||+|||+|++|+.+|.+|++. |++|+|+|+.+..++
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGG  221 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCC
Confidence            358999999999999999999997 999999999876654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.18  E-value=0.0041  Score=59.23  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~  205 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASL-GAEVTIVEALP  205 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            589999999999999999887 88999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.18  E-value=0.0056  Score=59.19  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. +.+|.|+|+++
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~  385 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFAD  385 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCC
Confidence            799999999999999999997 89999999764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.18  E-value=0.00053  Score=69.59  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ....|+|||+|+||+++|++|++. |++|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence            457999999999999999999997 99999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.17  E-value=0.00059  Score=62.59  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+|+|||+|.+|+.+|.+|++. |++|+|+|+.+...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g   54 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG   54 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence            35999999999999999999997 99999999987654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.16  E-value=0.0039  Score=59.28  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            4799999999999999999998 99999999875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG3855|consensus

Probab=97.10  E-value=0.00052  Score=62.48  Aligned_cols=37  Identities=35%  Similarity=0.715  Sum_probs=32.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccC---CCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVA---HWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~---g~~VlllE~g~~   91 (310)
                      ..|||||||||++|.+.|..|..++   .+||+|+|.+..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            4799999999999999999998754   579999999954

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.09  E-value=0.0052  Score=58.69  Aligned_cols=32  Identities=28%  Similarity=0.510  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~  213 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLADF-GVEVTVVEAAD  213 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCeEEEEEecC
Confidence            699999999999999999997 99999999875

>TIGR02053 MerA mercuric reductase

Probab=97.09  E-value=0.0048  Score=58.79  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~  199 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSD  199 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            3799999999999999999997 99999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.09  E-value=0.00063  Score=64.36  Aligned_cols=39  Identities=15%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..-|.|||||+||+.+|.+|+...|.+|.|+|+.+.+.+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG   77 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            357999999999999999876434999999999988765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.08  E-value=0.0051  Score=58.54  Aligned_cols=32  Identities=28%  Similarity=0.563  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~  203 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAP  203 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            699999999999999999997 89999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.07  E-value=0.00086  Score=66.46  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||+|++|+++|..|++. |++|+++|+.+...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G  346 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG  346 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence            357999999999999999999997 99999999987654

>PLN02976 amine oxidase

Probab=97.06  E-value=0.00069  Score=70.99  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||+|||+|++|+++|++|++. |++|+|||+.+..++
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGG  730 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGG  730 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCC
Confidence            358999999999999999999997 999999999765543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.04  E-value=0.00081  Score=64.43  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ..+|+|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~  178 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC  178 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            47999999999999999999997 9999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06370 mercuric reductase; Validated

Probab=97.01  E-value=0.0062  Score=58.04  Aligned_cols=32  Identities=28%  Similarity=0.580  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~  204 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGP  204 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            689999999999999999997 99999999875

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.01  E-value=0.0074  Score=57.56  Aligned_cols=32  Identities=19%  Similarity=0.278  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~  205 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLD  205 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            689999999999999999987 88999998764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.01  E-value=0.0012  Score=64.55  Aligned_cols=38  Identities=34%  Similarity=0.537  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..-+|+|||+|++|+++|..|++. |.+|+|+|+.+...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G  173 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG  173 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            346899999999999999999998 99999999976544

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.95  E-value=0.0065  Score=56.25  Aligned_cols=33  Identities=24%  Similarity=0.443  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~  174 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAA  174 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCC
Confidence            3699999999999999999997 99999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=96.93  E-value=0.019  Score=51.81  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. +.+|.++++.+
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~  179 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD  179 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence            799999999999999999997 89999999864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.88  E-value=0.011  Score=56.62  Aligned_cols=32  Identities=31%  Similarity=0.431  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~  216 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRL-GAEVTILEALP  216 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence            789999999999999999987 89999999875

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.87  E-value=0.0095  Score=55.71  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccC--CCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVA--HWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~--g~~VlllE~g~~   91 (310)
                      ++|.|||+|..|..+|.+|.+.+  ..+|.|+|+-+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            69999999999999999998842  223999998764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.86  E-value=0.011  Score=56.43  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~  207 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLD  207 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence            689999999999999999987 89999999865

>PRK13984 putative oxidoreductase; Provisional

Probab=96.83  E-value=0.0017  Score=64.04  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...+|+|||+|++|+++|..|++. |++|+|+|+.+...
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~g  319 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPG  319 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            457999999999999999999998 99999999987543

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.79  E-value=0.0018  Score=59.66  Aligned_cols=87  Identities=11%  Similarity=-0.014  Sum_probs=51.2

Q ss_pred             hHHHHHHHcCCCCC-CCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE
Q psy17311        202 HDVEAGQELGYENR-DINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI  280 (310)
Q Consensus       202 ~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~  280 (310)
                      ++++.++++|++.. +-++     ..++..    ....+...+ |...+++.|++|+++++|++|  +  +++ .+|.+.
T Consensus        58 d~~~fF~~~Gi~~~~e~~g-----rvfP~S----~~A~sVv~~-L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~  122 (376)
T TIGR03862        58 ALQDWARGLGIETFVGSSG-----RVFPVE----MKAAPLLRA-WLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETP  122 (376)
T ss_pred             HHHHHHHHCCCceEECCCC-----EECCCC----CCHHHHHHH-HHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEEC
Confidence            78888999999763 2222     222111    111223333 445677899999999999999  4  332 455543


Q ss_pred             ECCeEEEEEcCeEEEEeccCCchhh
Q psy17311        281 RHGIKQTVLARREELEVISFRTTTL  305 (310)
Q Consensus       281 ~~g~~~~i~A~k~VIlaaG~~s~~l  305 (310)
                      .++  ..++|++.||+++|.-.|.+
T Consensus       123 ~~~--~~~~a~~vIlAtGG~s~p~~  145 (376)
T TIGR03862       123 DGQ--STIEADAVVLALGGASWSQL  145 (376)
T ss_pred             CCc--eEEecCEEEEcCCCcccccc
Confidence            222  25789865555556655543

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.75  E-value=0.017  Score=54.84  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|||||+|..|+-+|..|++. |.+|.|+++.+
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~  305 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRT  305 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecC
Confidence            699999999999999999998 99999998763

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.73  E-value=0.0092  Score=60.93  Aligned_cols=32  Identities=28%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~  178 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAP  178 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            589999999999999999998 99999999865

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.73  E-value=0.024  Score=50.26  Aligned_cols=52  Identities=19%  Similarity=0.272  Sum_probs=37.9

Q ss_pred             CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      .|++++++++++++..+   +++.+|++.+  +++..++.++ .||+|+|+.. ..+++
T Consensus       190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~  244 (300)
T TIGR01292       190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLK  244 (300)
T ss_pred             CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHH
Confidence            48999999999999754   3677887754  4556788887 8999999543 33444

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.67  E-value=0.0021  Score=59.95  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~~   91 (310)
                      .+|||||+|+||+.+|..|.+. +.  +|+|+++.+.
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~   39 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERH   39 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCC
Confidence            5899999999999999999996 65  7999998754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.64  E-value=0.015  Score=55.30  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~  199 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHE  199 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence            699999999999999999997 99999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG1276|consensus

Probab=96.63  E-value=0.0021  Score=58.91  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~   94 (310)
                      ..-+|+|||+|++|+++|++|++. +...|+|.|+++..++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            356999999999999999999996 2234677999887554

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.61  E-value=0.002  Score=60.91  Aligned_cols=34  Identities=26%  Similarity=0.414  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .|||||+|.+|+++|..|++. ++.+|+|+|+.+.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            599999999999999999985 2358999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.61  E-value=0.01  Score=60.26  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~  173 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAP  173 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCC
Confidence            689999999999999999998 99999999764

>PRK12831 putative oxidoreductase; Provisional

Probab=96.50  E-value=0.026  Score=53.79  Aligned_cols=32  Identities=16%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|||+|..|+-+|..|.+. |.+|.|+++.+
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~  314 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRRS  314 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCEEEEEeecC
Confidence            799999999999999999998 88999998653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.49  E-value=0.018  Score=54.42  Aligned_cols=33  Identities=12%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|.+. |.+|.++++++
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~  182 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLED  182 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCc
Confidence            3699999999999999999997 99999998764

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.43  E-value=0.0037  Score=59.14  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .|||||+|.+|+.+|.+|.+. ++.+|+|+|+.+.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            699999999999999999874 3678999999864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.39  E-value=0.05  Score=49.93  Aligned_cols=38  Identities=34%  Similarity=0.392  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ...+|+|.||-|++-++.|.-|.+..+.+++.|||-+.
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~   40 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD   40 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence            35699999999999999999999986789999999864

>PRK06116 glutathione reductase; Validated

Probab=96.37  E-value=0.046  Score=51.89  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  200 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGD  200 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            3689999999999999999987 89999999775

>KOG1439|consensus

Probab=96.34  E-value=0.0025  Score=57.95  Aligned_cols=41  Identities=24%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |+++|||||+|.|.-=|..+..|+.+ |.+||.+||.+..++
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~   41 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGG   41 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCc
Confidence            45679999999999999999999998 999999999987664

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.32  E-value=0.0057  Score=57.59  Aligned_cols=36  Identities=22%  Similarity=0.427  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ...+|||||+|.+|+.+|.+|... +.+|+|||+.+.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~   44 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNH   44 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCC
Confidence            357999999999999999999775 789999998764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.28  E-value=0.033  Score=53.40  Aligned_cols=30  Identities=13%  Similarity=0.224  Sum_probs=25.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+++
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~  211 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGI-GLDVTVMVR  211 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCcEEEEEe
Confidence            588899999999888888887 888888875

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.15  E-value=0.046  Score=52.00  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -.|+|||+|..|+-+|..|++. |. +|.++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~  306 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRR  306 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeec
Confidence            3799999999999999999997 76 89999865

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.15  E-value=0.0059  Score=57.78  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .-.|-|||||++|+.+|..|+++ |++|++.|+-+...+
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GG  160 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGG  160 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCce
Confidence            36999999999999999999998 999999999877664

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.14  E-value=0.0087  Score=55.01  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhcc--CCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV--AHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~--~g~~VlllE~g~~~   92 (310)
                      .|||||+|.+|+.+|.+|.++  ++.+|+|+|+.+..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            489999999999999999642  46899999988653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.10  E-value=0.044  Score=52.60  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=32.2

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      .++.|+++++++.|++|..+  ++....|.+. +++  ++.++ .||+|.|.
T Consensus       241 L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~-~g~--~i~~D-~vl~a~G~  286 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLN--ADGSKHVTFE-SGK--TLDVD-VVMMAIGR  286 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEc--CCceEEEEEc-CCC--EEEcC-EEEEeeCC
Confidence            35679999999999999865  3333445543 343  57887 78888884

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG1800|consensus

Probab=96.08  E-value=0.0083  Score=54.33  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~   94 (310)
                      .-|.|||||+||..+|.+|-++ ++.+|.++|+-+.+.+
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            4899999999999999999984 6899999999988765

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.011  Score=53.38  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .|||||+|.|..=|+.+..|+.+ |.+||.||+.+..+.
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~   43 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGS   43 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCc
Confidence            69999999999999999999998 999999999987653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.98  E-value=0.065  Score=51.23  Aligned_cols=50  Identities=16%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----------CCeEEEEEcCeEEEEeccCCc
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----------HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----------~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ++.|+++++++.+++|.-+  ++++++|++.+           .+....+.++ .||+|.|...
T Consensus       340 ~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p  400 (471)
T PRK12810        340 HEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTG  400 (471)
T ss_pred             HHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCC
Confidence            4568999999999999765  78899988652           2445688997 8899999543

>KOG4405|consensus

Probab=95.95  E-value=0.0089  Score=54.55  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=37.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ++++||+||||.|.-=++.|...++. |.+||=||..+..++
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGG   45 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCC
Confidence            45789999999999999999999997 999999999887664

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.78  E-value=0.0079  Score=53.49  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      --|.|||+|.||+-+|+++|+. |.+|.|.|--+.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHc-CCcEEEEEcccc
Confidence            4689999999999999999998 999999996554

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.69  E-value=0.013  Score=54.16  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .|+||||+|+||+.+|.+|.+. +..+|+||++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            4899999999999999999873 3568999988664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.62  E-value=0.017  Score=45.93  Aligned_cols=31  Identities=29%  Similarity=0.666  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.|||+|..|+..|.+|++. |.+|.++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence            68999999999999999996 99999999875

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG2755|consensus

Probab=95.55  E-value=0.01  Score=51.17  Aligned_cols=35  Identities=40%  Similarity=0.584  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~~   92 (310)
                      .+||||+|+||.++|-.|+. .|..+||||-+.+..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            37999999999999999998 357799999887653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.52  E-value=0.12  Score=52.49  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~   90 (310)
                      .|||||+|..|+-+|..|.+. |.+ |.|+++.+
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence            699999999999999999997 776 99998653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.40  E-value=0.28  Score=44.83  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=29.8

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF  300 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~  300 (310)
                      .+..++++.+++|+.+..++ ++++ -+.+.+  .+....+.++ .||+|+|+
T Consensus       290 g~~~~~l~~~~~v~~~~~~~-~~~~-~l~~~~~~~~~~~~~~~D-~VilATGy  339 (341)
T PF13434_consen  290 GRGRLRLLPNTEVTSAEQDG-DGGV-RLTLRHRQTGEEETLEVD-AVILATGY  339 (341)
T ss_dssp             T---SEEETTEEEEEEEEES--SSE-EEEEEETTT--EEEEEES-EEEE---E
T ss_pred             CCCCeEEeCCCEEEEEEECC-CCEE-EEEEEECCCCCeEEEecC-EEEEcCCc
Confidence            34569999999999999983 2433 344554  5667788998 89999997

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.35  E-value=0.24  Score=51.44  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .|||||+|..|+=+|..+.+. |.+|.++.+.
T Consensus       449 ~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr  479 (944)
T PRK12779        449 EVFVIGGGNTAMDAARTAKRL-GGNVTIVYRR  479 (944)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEEec
Confidence            699999999999999999997 8899998765

>TIGR02730 carot_isom carotene isomerase

Probab=95.22  E-value=0.027  Score=54.14  Aligned_cols=37  Identities=38%  Similarity=0.448  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |||||||||++|+++|..|+++ |++|+||||...+++
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~GG   37 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPGG   37 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCCC
Confidence            7999999999999999999998 999999999987664

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.22  E-value=0.022  Score=52.77  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      -+++|||+|.+|+-+|..|++. |.+|+|+|+.+...+
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~  173 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGG  173 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccch
Confidence            5999999999999999999998 999999999987654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.21  E-value=0.18  Score=50.39  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=27.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|||||+|..|+-+|..+.+. |. +|.++++.+
T Consensus       470 ~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~~  502 (654)
T PRK12769        470 NVVVLGGGDTAMDCVRTALRH-GASNVTCAYRRD  502 (654)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCCeEEEeEecC
Confidence            699999999999999988887 65 699887653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.21  E-value=0.025  Score=45.58  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |.|||+|..|.++|..|+++ |.+|.|..+.+
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            78999999999999999998 99999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.16  E-value=0.022  Score=48.76  Aligned_cols=32  Identities=34%  Similarity=0.596  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|-.|..+|..|++. |.+|+++|+.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence            589999999999999999998 99999999875

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.03  E-value=0.23  Score=47.39  Aligned_cols=33  Identities=15%  Similarity=0.154  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..+.+. |. +|.|+++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecC
Confidence            3799999999999999999887 74 799998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0404|consensus

Probab=94.71  E-value=0.03  Score=47.26  Aligned_cols=53  Identities=13%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      +..++.+.+|+++++|+.+.+..-+  ++...|+.+++  .|....+..+ .+.-+-|
T Consensus       198 Mq~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v~-GlFf~IG  252 (322)
T KOG0404|consen  198 MQQRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPVS-GLFFAIG  252 (322)
T ss_pred             HHHHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCcccccccc-eeEEEec
Confidence            3445667789999999998888766  67777777764  5666667765 6666666

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.63  E-value=0.33  Score=50.77  Aligned_cols=54  Identities=17%  Similarity=0.095  Sum_probs=38.9

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccC-Cchhhhh
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISF-RTTTLSR  307 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~-~s~~ll~  307 (310)
                      ++.|+++++++.|+++.-   ++++.+|++.. ++...++.++ .|+++.|+ -+..|++
T Consensus       362 ~~~GV~i~~~~~v~~i~g---~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~  417 (985)
T TIGR01372       362 RELGIEVLTGHVVAATEG---GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFS  417 (985)
T ss_pred             HHcCCEEEcCCeEEEEec---CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHH
Confidence            456899999999999853   45688888874 4445678897 88888884 3444543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.56  E-value=0.053  Score=44.75  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=27.1

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |.|||+|..|...|..++.. |.+|.|+|..+
T Consensus         2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~   32 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP   32 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred             EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            68999999999999999998 99999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.53  E-value=0.045  Score=51.02  Aligned_cols=34  Identities=15%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~  179 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAATV  179 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            699999999999999999997 9999999998754

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=94.32  E-value=0.093  Score=47.73  Aligned_cols=52  Identities=10%  Similarity=0.059  Sum_probs=37.8

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEE--EEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAY--GVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~--GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      ++..+|++..+++|+.|.++...|+.+  .+.+..+++...+..+.-|+++.|.
T Consensus       237 L~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgs  290 (587)
T COG4716         237 LKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGS  290 (587)
T ss_pred             HHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecce
Confidence            477899999999999999986555322  2222335666777888888888873

>KOG1336|consensus

Probab=94.18  E-value=0.39  Score=45.06  Aligned_cols=46  Identities=15%  Similarity=0.076  Sum_probs=37.0

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.|++++.++.+.++..++ +|+++-|.+.++.   ++.|+ .||+..|
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg~---~l~ad-lvv~GiG  310 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDGK---TLEAD-LVVVGIG  310 (478)
T ss_pred             HHhcCeEEEEecceeecccCC-CCcEEEEEeccCC---EeccC-eEEEeec
Confidence            467899999999999999886 6889888877443   67887 7777777

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.17  E-value=0.056  Score=48.58  Aligned_cols=32  Identities=25%  Similarity=0.454  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|+..|.+|++. |.+|.++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence            699999999999999999997 99999999974

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.13  E-value=0.056  Score=55.04  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=37.6

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR  301 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~  301 (310)
                      .+.+..++.|+++++++.|++|.-+   +++.+|.+. +|+  .+.++ .||+++|+.
T Consensus       187 ~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~-dG~--~i~~D-~Vi~a~G~~  237 (785)
T TIGR02374       187 LLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFK-DGS--SLEAD-LIVMAAGIR  237 (785)
T ss_pred             HHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEEC-CCC--EEEcC-EEEECCCCC
Confidence            3444556789999999999998643   457777765 443  57887 889999953

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.12  E-value=0.06  Score=50.91  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|.+|+-+|..|++. |.+|.|+|+++...
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l  193 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTIL  193 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccC
Confidence            699999999999999999997 99999999987543

>KOG0399|consensus

Probab=94.12  E-value=0.068  Score=54.87  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV   95 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~   95 (310)
                      .-.-|-|||+|++|+.+|-.|-+. |+.|+|.||.+..++.
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGL 1823 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCce
Confidence            457899999999999999999998 9999999999877653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.04  E-value=0.07  Score=54.66  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=40.3

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      .+....++.|+++++++.|++|..+. .+....|.+. +|+  .+.++ .||+|+|+.. ..|++
T Consensus       192 ~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~  251 (847)
T PRK14989        192 QLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLAT  251 (847)
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHh
Confidence            44455677899999999999997642 2445566654 443  57887 8899999432 33543

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=93.95  E-value=0.051  Score=50.32  Aligned_cols=44  Identities=18%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      ++..+.+|+++++|++|..+  ++++. |.+. +|+  ++.|+ .||+|..
T Consensus       219 ~~~~g~~i~l~~~V~~I~~~--~~~v~-v~~~-~g~--~~~ad-~VI~a~p  262 (450)
T PF01593_consen  219 AEELGGEIRLNTPVTRIERE--DGGVT-VTTE-DGE--TIEAD-AVISAVP  262 (450)
T ss_dssp             HHHHGGGEESSEEEEEEEEE--SSEEE-EEET-TSS--EEEES-EEEE-S-
T ss_pred             HhhcCceeecCCcceecccc--ccccc-cccc-cce--EEecc-eeeecCc
Confidence            44457799999999999999  66654 3333 443  67887 6888875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>KOG3851|consensus

Probab=93.89  E-value=0.06  Score=47.89  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~   90 (310)
                      ..+|.|+|||+|.+|+.+|.++.+.-+ -+|.+||-.+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            468999999999999999999988423 3799999654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.80  E-value=0.076  Score=50.52  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=29.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |.|||.|.+|+++|..|.+. |++|.+.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence            79999999999999999998 999999998754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.76  E-value=0.085  Score=50.42  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.|||+++...
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il  210 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVI  210 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCC
Confidence            699999999999999999997 99999999987544

>PRK07846 mycothione reductase; Reviewed

Probab=93.73  E-value=0.08  Score=50.33  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccc
Confidence            3799999999999999999997 99999999987543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=93.68  E-value=0.15  Score=48.88  Aligned_cols=53  Identities=19%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC--CeEEEEEcCeEEEEeccC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH--GIKQTVLARREELEVISF  300 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~--g~~~~i~A~k~VIlaaG~  300 (310)
                      |.+.+++.|++|+++++|++|+.+  ++++.||.+.++  +....+.|+ .||+++..
T Consensus       238 L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~  292 (492)
T TIGR02733       238 LVEALKRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPP  292 (492)
T ss_pred             HHHHHHhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEECC-EEEECCCH
Confidence            444556689999999999999998  788899987643  222467887 68887753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.67  E-value=0.073  Score=47.87  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+++ |++|.++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence            589999999999999999998 99999999874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.60  E-value=0.087  Score=50.44  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|.+|+.+|..|++. |.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            699999999999999999997 99999999764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.60  E-value=0.089  Score=47.41  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|..|+..|.+|+++ |.+|.++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            3699999999999999999997 99999999875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.59  E-value=0.099  Score=43.49  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=28.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|+|||+|..+.-+|..|++. |.+|.++=|.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            4799999999999999999998 89999998875

...

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.47  E-value=0.099  Score=43.33  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |.|||.|-.|+++|..||+. |++|+-+|..+
T Consensus         3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             EEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            78999999999999999998 99999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=93.24  E-value=0.13  Score=48.65  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=33.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .++|||+|..|+-.|.-+++. |.+|+|||+++..-+
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp  210 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP  210 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC
Confidence            499999999999999999998 999999999987655

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=93.17  E-value=0.11  Score=48.94  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|.+|+-+|..|++. |.+|.++++++..
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~  172 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI  172 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence            799999999999999999997 9999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.16  E-value=0.1  Score=46.57  Aligned_cols=30  Identities=27%  Similarity=0.473  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      .+.|||+|..|+..|..|+++ |.+|.++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence            378999999999999999997 999999988

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.12  E-value=0.11  Score=46.24  Aligned_cols=30  Identities=17%  Similarity=0.460  Sum_probs=28.2

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +.|||+|..|...|..|++. |.+|.++++.
T Consensus         3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQA-GHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            78999999999999999997 9999999983

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=93.09  E-value=0.11  Score=49.14  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l  183 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI  183 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence            699999999999999999997 9999999998753

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=93.00  E-value=0.94  Score=47.53  Aligned_cols=50  Identities=10%  Similarity=0.151  Sum_probs=34.8

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE----------------CCeEEEEEcCeEEEEeccCC
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR----------------HGIKQTVLARREELEVISFR  301 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~----------------~g~~~~i~A~k~VIlaaG~~  301 (310)
                      ++.|+++++++.+++|..++ +|+++||++.+                ++....+.++ .||+|.|+.
T Consensus       620 ~eeGI~~~~~~~p~~i~~~~-~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~  685 (1006)
T PRK12775        620 KEEGIDFFFLHSPVEIYVDA-EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTK  685 (1006)
T ss_pred             HhCCCEEEecCCcEEEEeCC-CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcC
Confidence            34578888888888886543 67788887642                2334578997 889999953

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.95  E-value=0.13  Score=48.84  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|.+|+.+|..|++. |++|.++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            4689999999999999999998 99999999864

>KOG3923|consensus

Probab=92.94  E-value=0.13  Score=45.24  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             cccEEEECCChhHHHHHHHHhcc------CCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEV------AHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~------~g~~VlllE~g~~~~   93 (310)
                      ..+++|||+|..||++|..+.+.      |..+|.+++--..+.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~   46 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED   46 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence            35899999999999999777662      346888887555444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.93  E-value=0.17  Score=38.16  Aligned_cols=31  Identities=26%  Similarity=0.547  Sum_probs=27.8

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |||||.|..|..+|..|.+. +.+|+++|+.+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence            79999999999999999995 88999999875

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=92.81  E-value=0.13  Score=48.88  Aligned_cols=35  Identities=20%  Similarity=0.291  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l  211 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLL  211 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcC
Confidence            699999999999999999997 99999999987543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.73  E-value=0.14  Score=45.58  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..|+++ |.+|.++|+.+
T Consensus         5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            589999999999999999997 99999999764

>TIGR02731 phytoene_desat phytoene desaturase

Probab=92.72  E-value=0.28  Score=46.57  Aligned_cols=50  Identities=10%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC-C-eEEEEEcCeEEEEecc
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH-G-IKQTVLARREELEVIS  299 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~-g-~~~~i~A~k~VIlaaG  299 (310)
                      .+++.|++|++++.|++|..++ +++++||++.++ + +.+++.++ .||+|..
T Consensus       222 ~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p  273 (453)
T TIGR02731       222 YITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTAD-AYVSAMP  273 (453)
T ss_pred             HHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEECC-EEEEcCC
Confidence            3455799999999999998753 677999998643 2 22357886 6888775

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=92.70  E-value=0.14  Score=48.71  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l  205 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRIL  205 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcC
Confidence            699999999999999999997 99999999987543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.70  E-value=0.12  Score=45.89  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+++ |++|+++|+.+
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence            489999999999999999998 99999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=92.62  E-value=0.15  Score=48.56  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -.++|||+|..|+-.|..|++. |.+|.|+|+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l  204 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL  204 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence            3799999999999999999997 9999999998754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.49  E-value=0.15  Score=46.01  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..++.. |++|++.|..+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            488999999999999999997 99999999764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.43  E-value=0.19  Score=39.24  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCe-EEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g   89 (310)
                      .--++|||+|.+|-.++..|++. |.+ |.|+-|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            45899999999999999999998 765 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=92.39  E-value=0.23  Score=47.76  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |||||||++|+++|.+|+++ |++|+||||.+..++
T Consensus         1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~GG   35 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPGG   35 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCcC
Confidence            69999999999999999998 999999999987665

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.30  E-value=0.16  Score=45.25  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|-|||+|..|...|..++.+ |++|+++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            588999999999999999998 999999998754

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=92.12  E-value=0.18  Score=47.85  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence            599999999999999999997 9999999998754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.87  E-value=0.24  Score=41.70  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      --++|||+|-.|...|..|.+. |.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence            4899999999999999999997 8999999753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=91.86  E-value=0.24  Score=47.24  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+++...+
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~  214 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLP  214 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCC
Confidence            689999999999999999997 999999999875443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.85  E-value=0.21  Score=46.17  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +++|||+|..|.++|..|+++...+|++.+|..
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            699999999999999999998338999999973

>PLN02507 glutathione reductase

Probab=91.85  E-value=0.21  Score=48.15  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-.|..|++. |.+|.|+|+++..
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~  238 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELP  238 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCc
Confidence            699999999999999999997 9999999998754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=91.82  E-value=0.25  Score=41.51  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ...|.|||+|..|+.+|..|++. |. ++.|+|....
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~v   56 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFDVV   56 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCEE
Confidence            46899999999999999999997 87 6999998743

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=91.81  E-value=0.14  Score=47.67  Aligned_cols=39  Identities=31%  Similarity=0.586  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccC------------CCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVA------------HWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~------------g~~VlllE~g~~~~~   94 (310)
                      .-+|+|||||..|.-.|.+|++.-            ..+|.|+|+++..-+
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp  205 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP  205 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc
Confidence            358999999999999999998721            139999999986543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=91.78  E-value=0.2  Score=49.00  Aligned_cols=33  Identities=36%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+++++.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPD  177 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCc
Confidence            699999999999999999997 999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK04148 hypothetical protein; Provisional

Probab=91.77  E-value=0.18  Score=39.35  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -.+++||.| .|..+|..|++. |.+|+.+|..+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence            359999999 888889999997 999999998763

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=91.76  E-value=0.21  Score=49.71  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-.|..|++. |.+|.|+|+++...
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll  348 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLL  348 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccc
Confidence            699999999999999999997 99999999987544

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.69  E-value=0.21  Score=45.48  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|.+|+++ |++|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence            489999999999999999998 99999999853

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.64  E-value=0.22  Score=45.09  Aligned_cols=31  Identities=29%  Similarity=0.407  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+.|||+|..|...|..|+++ |++|.++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK-KISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEecC
Confidence            378999999999999999998 9999999984

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=91.63  E-value=0.28  Score=39.46  Aligned_cols=30  Identities=23%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEc
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLE   87 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE   87 (310)
                      -.++|||+|-.|.--|..|.+. |.+|+|+.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs   43 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS   43 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence            4799999999999999999997 99999994

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.55  E-value=0.24  Score=44.13  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+++ |.+|.+.|+.+
T Consensus         6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999764

>PTZ00058 glutathione reductase; Provisional

Probab=91.52  E-value=0.21  Score=48.78  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-.|..|++. |.+|.|+|+++...
T Consensus       239 ~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il  273 (561)
T PTZ00058        239 RIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLL  273 (561)
T ss_pred             EEEEECCcHHHHHHHHHHHHc-CCcEEEEEeccccc
Confidence            699999999999999999997 99999999987543

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=91.51  E-value=0.37  Score=46.17  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=40.9

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCC--CC-eEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPA--TK-KAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~--~~-~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      +..++.|++|+++++|++|..+..  +. +++||++.+++....+.++ .||+|.. ..+.+|+.+
T Consensus       227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll~~  291 (474)
T TIGR02732       227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLLPQ  291 (474)
T ss_pred             HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhCCh
Confidence            334568999999999999998631  12 4888888533211347787 6888876 455555543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=91.47  E-value=0.22  Score=48.22  Aligned_cols=33  Identities=33%  Similarity=0.554  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|+|||+|..|+-+|..|+.. +.+|.|+++++.
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~  385 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPE  385 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEEECcc
Confidence            799999999999999999997 899999998864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=91.30  E-value=0.3  Score=46.16  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-.|..|++. |.+|.|+|+++...
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l  194 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLFL  194 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            699999999999999999997 99999999986543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=91.29  E-value=0.23  Score=36.80  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .-.++|||+|..|..-+..|.+. |.+|+|+...
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence            35799999999999999999997 9999999865

>PRK13748 putative mercuric reductase; Provisional

Probab=91.24  E-value=0.25  Score=48.25  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+++..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARL-GSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence            699999999999999999997 99999999864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.22  E-value=0.28  Score=44.76  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ...|+|||+|..|+.+|..|++. |. ++.++|....
T Consensus        24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~V   59 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDYV   59 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCcc
Confidence            56899999999999999999998 77 8999998753

>PLN02546 glutathione reductase

Probab=91.12  E-value=0.26  Score=48.14  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +++|||+|..|+-.|..|++. |.+|.|+|+++..
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i  287 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV  287 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence            799999999999999999997 9999999998753

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=91.07  E-value=3  Score=37.44  Aligned_cols=51  Identities=18%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             CCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEeccC-Cchhhh
Q psy17311        251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIRH-GIKQTVLARREELEVISF-RTTTLS  306 (310)
Q Consensus       251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG~-~s~~ll  306 (310)
                      +.++.+++++.+++|.-+  +  +.+|.+.+. +....+..+ .|.++-|. ....++
T Consensus       191 ~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~  243 (305)
T COG0492         191 NVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELL  243 (305)
T ss_pred             cCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHH
Confidence            348999999999999766  4  888988864 666677776 77777773 333444

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=90.88  E-value=0.34  Score=40.84  Aligned_cols=32  Identities=19%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      --++|||+|..|..-|..|.+. |.+|+|+...
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3799999999999999999997 9999999754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02487 zeta-carotene desaturase

Probab=90.85  E-value=0.4  Score=46.90  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=41.3

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCC-CC--eEEEEEEEECCeEEEEEcCeEEEEeccCC-chhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPA-TK--KAYGVQFIRHGIKQTVLARREELEVISFR-TTTLS  306 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~-~~--~v~GV~~~~~g~~~~i~A~k~VIlaaG~~-s~~ll  306 (310)
                      +..++.|++|++++.|++|+.+.+ ++  +++||++.+++....+.++ .||++.+.+ ..+|+
T Consensus       303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence            345778999999999999999732 22  5899988533333357786 788888844 34443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.82  E-value=0.31  Score=42.80  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~~   92 (310)
                      ..-|+|||.|..|+.+|..|++. | .++.|+|.....
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~   66 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVC   66 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEec
Confidence            46899999999999999999997 7 689999976543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.81  E-value=0.31  Score=43.38  Aligned_cols=32  Identities=16%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+.+ |.+|.++|+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            488999999999999999997 99999999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.69  E-value=0.34  Score=44.20  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~   92 (310)
                      +.-|+|||+|..|+.+|..|++. |. ++.|+|....+
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ve   60 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDYVE   60 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCccc
Confidence            46799999999999999999998 76 89999987643

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.64  E-value=0.37  Score=40.44  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -++|+|.|..|..+|.+|.+. |.+|++.|+.
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~   60 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN   60 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            599999999999999999998 9999999865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14727 putative mercuric reductase; Provisional

Probab=90.63  E-value=0.31  Score=46.67  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-.|..|++. |.+|.|+++..
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~  221 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARST  221 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCC
Confidence            699999999999999999997 99999999853

>PRK14694 putative mercuric reductase; Provisional

Probab=90.51  E-value=0.33  Score=46.36  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|++++.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence            699999999999999999997 99999999753

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=90.41  E-value=0.38  Score=43.31  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      .+.|||+|..|+++|+.|++. |  ..|.|+|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence            489999999999999999997 7  5799999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.32  E-value=0.35  Score=44.69  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+++|||+|.+|..+|..|... |.+|.++++..
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGL-GATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            5699999999999999999997 88999999753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.23  E-value=0.32  Score=43.11  Aligned_cols=32  Identities=19%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|++. |.+|+++|..+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence            589999999999999999998 99999998654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=90.21  E-value=0.34  Score=44.34  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+ |.|+++.+
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence            599999999999999999887 876 99999865

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.12  E-value=1.7  Score=42.57  Aligned_cols=34  Identities=15%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-.+||+|.|..|-.+|.+|.++ |.+|+++|+.+
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence            46899999999999999999997 99999999875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.11  E-value=0.45  Score=43.16  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|.+|+++ |++|.++++.+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999853

>PTZ00052 thioredoxin reductase; Provisional

Probab=90.08  E-value=0.34  Score=46.69  Aligned_cols=31  Identities=16%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence            799999999999999999998 9999999974

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=90.07  E-value=0.39  Score=43.12  Aligned_cols=31  Identities=39%  Similarity=0.546  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -+.|||+|..|+.+|+-|+.. |. +|+|+|.-
T Consensus         3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            488999999999999999997 65 89999984

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.07  E-value=0.35  Score=43.55  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+++ |++|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            589999999999999999997 99999999863

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.01  E-value=0.47  Score=37.32  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      |+|||.|..|+.+|..|++. |. ++.++|....
T Consensus         2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v   34 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV   34 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence            78999999999999999997 76 7999997754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=89.96  E-value=0.39  Score=42.81  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~   90 (310)
                      -++|+|+|.+|.++|..|++. |.+ |.++.|..
T Consensus       128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~  160 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD  160 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence            589999999999999999998 875 99998864

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=89.96  E-value=0.41  Score=45.09  Aligned_cols=35  Identities=34%  Similarity=0.718  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhcc-------------CCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-------------AHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-------------~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-.|..|++.             ++.+|.|+|+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            799999999999999999861             37899999998654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=89.94  E-value=0.38  Score=41.22  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC---eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW---SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE~g~   90 (310)
                      -.++|+|+|.+|..+|..|.+. |.   +|.++++.+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence            3699999999999999999997 76   599999975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=89.79  E-value=0.44  Score=42.34  Aligned_cols=33  Identities=27%  Similarity=0.489  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.++|||+|.+|.++|+.|++. |. +|.|++|..
T Consensus       128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence            4699999999999999999997 75 799999864

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=89.74  E-value=0.48  Score=38.80  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      |+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus         2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v   34 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDVV   34 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEE
Confidence            78999999999999999997 77 5999998753

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.62  E-value=0.38  Score=43.28  Aligned_cols=31  Identities=23%  Similarity=0.568  Sum_probs=28.3

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.|+|+|..|+..|++|++. |..|+++=|.+
T Consensus         3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~   33 (307)
T COG1893           3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSR   33 (307)
T ss_pred             EEEECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence            78999999999999999998 78899888776

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=89.59  E-value=0.53  Score=38.26  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-|+|+|+|.+|..||.-|... |.+|.++|...
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence            6899999999999999999998 99999999753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.43  E-value=0.44  Score=45.14  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|+|+|..|+++|..|++. |.+|++.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence            489999999999999999997 99999999764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.39  E-value=0.61  Score=37.99  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=29.5

Q ss_pred             cccEEEECCCh-hHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGS-AGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~-aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ...++|||+|- +|..+|..|.+. |.+|.++.+.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            57999999996 699999999997 8899999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=89.27  E-value=0.54  Score=42.25  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~   91 (310)
                      -|.|||+|.+|.++|+.|++. |  ..|.|+|+...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence            379999999999999999997 7  47999998653

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.21  E-value=0.51  Score=44.18  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|+|+|.|..|+.+|..|... |.+|+++|..+
T Consensus       203 ktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            4799999999999999999887 89999999765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=89.18  E-value=0.57  Score=39.37  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      .+.-|+|||.|..|+.+|..|++. |. ++.|+|....
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEE
Confidence            357899999999999999999998 75 8999998754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.00  E-value=0.69  Score=35.99  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      .-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcce
Confidence            4689999999999999999998 76 7999998754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=88.99  E-value=0.8  Score=32.60  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      -.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46999999999999999999974678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.94  E-value=0.58  Score=42.03  Aligned_cols=32  Identities=19%  Similarity=0.461  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|++. |++|.++|+..
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            589999999999999999997 99999999753

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=88.93  E-value=0.52  Score=36.95  Aligned_cols=31  Identities=13%  Similarity=0.437  Sum_probs=26.5

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|+|+|..+..+|.-+... |++|+|+|-.+
T Consensus         1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            58999999999999999887 99999999764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=88.72  E-value=0.49  Score=44.39  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|-|||.|..|+..|..|++. |++|+++++.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence            378999999999999999997 99999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=88.60  E-value=0.54  Score=41.93  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..|+.. |.+|.+.|+.+
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~   37 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP   37 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence            488999999999999999997 99999999764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.33  E-value=0.57  Score=43.09  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+-|||+|-.|++.|.-||+. |++|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            478999999999999999998 99999999864

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.03  E-value=0.56  Score=45.21  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|-|||+|..|...|..|+++ |++|.|.|+.+
T Consensus         7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~   38 (503)
T TIGR02279         7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA   38 (503)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            489999999999999999998 99999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=88.02  E-value=0.59  Score=43.94  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||.|..|++.|..|++. |++|.++|+.+
T Consensus         5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~   36 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ   36 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence            489999999999999999998 99999999754

>PRK07208 hypothetical protein; Provisional

Probab=88.01  E-value=1.5  Score=41.87  Aligned_cols=54  Identities=13%  Similarity=0.107  Sum_probs=37.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISF  300 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~  300 (310)
                      |...+++.|++|+++++|++|..++ ++.+.++.... +|....+.|+ .||+|...
T Consensus       224 L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad-~VI~a~p~  278 (479)
T PRK07208        224 AAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTAD-QVISSMPL  278 (479)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcC-EEEECCCH
Confidence            3344556789999999999999983 34455555543 4554568886 67877653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.88  E-value=0.73  Score=39.16  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=28.2

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.||| +|..|.+.|..|++. |++|.+..+.+
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence            378997 799999999999997 89999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.87  E-value=0.72  Score=41.44  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|.|||+|..|...|.+|+++ |++|.+.++...
T Consensus         6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~~   38 (308)
T PRK14619          6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRSG   38 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            589999999999999999998 999999998653

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=87.79  E-value=0.81  Score=41.43  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      .-+.|||+|..|..+|+.++.. |. +|.|+|..+.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence            4799999999999999999986 75 8999998654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=87.71  E-value=0.67  Score=45.01  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -++|+|+|.+|.++|+.|++. |.+|.++.|.
T Consensus       381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~  411 (529)
T PLN02520        381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT  411 (529)
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            589999999999999999998 8899999874

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=87.67  E-value=0.67  Score=41.49  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=27.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      |.|||+|..|..+|..|+.. +. +|.|+|..+
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence            57999999999999999986 66 999999874

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=87.41  E-value=0.73  Score=43.70  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|+|||+|..|.-.|.+|++. |.+|.|+=|.+.
T Consensus       177 rV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~  209 (443)
T COG2072         177 RVLVIGAGASAVDIAPELAEV-GASVTLSQRSPP  209 (443)
T ss_pred             eEEEECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence            899999999999999999998 899999998864

>PLN02612 phytoene desaturase

Probab=87.26  E-value=1.1  Score=44.06  Aligned_cols=46  Identities=11%  Similarity=0.088  Sum_probs=35.2

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.|++|+++++|++|..++ ++++.+|++. +|+  .+.++ .||+|..
T Consensus       318 l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~-~G~--~~~ad-~VI~a~p  363 (567)
T PLN02612        318 FQSLGGEVRLNSRIKKIELND-DGTVKHFLLT-NGS--VVEGD-VYVSATP  363 (567)
T ss_pred             HHhcCCEEEeCCeeeEEEECC-CCcEEEEEEC-CCc--EEECC-EEEECCC
Confidence            345799999999999999864 5677888775 453  47787 6777765

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=87.19  E-value=0.65  Score=41.33  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-+|+|||+|.+|.-+|.-+.-. |.+|.+||...
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence            46999999999999999999887 99999999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=87.16  E-value=0.87  Score=38.59  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ..-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~v   63 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDVV   63 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCEe
Confidence            56899999999999999999997 76 5999998753

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=87.03  E-value=0.73  Score=44.39  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|-|||+|..|...|..|+.+ |++|+|.|+.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            488999999999999999998 99999998753

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=86.99  E-value=0.72  Score=46.52  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..++.+ |++|.|+|..+
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ  346 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.72  E-value=1.1  Score=38.77  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...|+|||+|..|+.+|..|+..+-.++.++|......
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~   61 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL   61 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence            47899999999999999999998334799999876443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=86.65  E-value=0.98  Score=38.81  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ..-|+|||+|..|+.+|..|+.. |. ++.++|....
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCcc
Confidence            46899999999999999999998 64 6899987654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=86.63  E-value=0.88  Score=40.49  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||.|.+|..+|..|... |.+|.+.++..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999997 89999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06223 malate dehydrogenase; Reviewed

Probab=86.60  E-value=0.92  Score=40.67  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|.|||+|..|..+|..++.. |. .|.|+|...
T Consensus         4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~   36 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE   36 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence            689999999999999999986 54 899999843

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=86.50  E-value=0.75  Score=43.88  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+=+|..|++. +.+|.++.+++.
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~  238 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE  238 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence            699999999999999999997 889999998753

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=86.42  E-value=0.88  Score=43.95  Aligned_cols=33  Identities=30%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|-|||+|..|...|..|+.+ |+.|.|.|+.+.
T Consensus         9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e   41 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG   41 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            488999999999999999998 999999997653

>PRK08017 oxidoreductase; Provisional

Probab=86.38  E-value=0.99  Score=38.82  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=28.6

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|+|+ |..|..+|.+|++. |++|+++.+..
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~   36 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRKP   36 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3899998 99999999999997 99999998754

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=86.33  E-value=1  Score=38.94  Aligned_cols=38  Identities=16%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccC----------CCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVA----------HWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~----------g~~VlllE~g~~~   92 (310)
                      ....|+|||+|..|+.++-.|++.+          |.++.|+|.....
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve   57 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS   57 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence            4679999999999999999999851          3389999976543

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=86.27  E-value=1  Score=39.92  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|+|+|.++-++|+.|++.+-.+|.|+.|..
T Consensus       129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            589999999999999999997334799998753

>KOG2495|consensus

Probab=86.25  E-value=0.4  Score=44.45  Aligned_cols=36  Identities=31%  Similarity=0.585  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhc-------------cCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSE-------------VAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae-------------~~g~~VlllE~g~~~   92 (310)
                      --+||||||+.|.-.|.+|+.             ..-.+|+|+|+.+..
T Consensus       219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i  267 (491)
T KOG2495|consen  219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI  267 (491)
T ss_pred             EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence            589999999999999999986             114589999999843

>TIGR00936 ahcY adenosylhomocysteinase

Probab=86.19  E-value=1  Score=42.09  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-.|+|||.|..|..+|..|... |.+|+++|..+
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp  228 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP  228 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence            34799999999999999999987 99999999765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=86.12  E-value=0.86  Score=45.96  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..++.+ |.+|.|+|..+
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~  346 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ  346 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            599999999999999999998 99999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=86.11  E-value=2.7  Score=39.07  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=31.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC---eEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW---SILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE~g~~~   92 (310)
                      .+..+|+.|+|.||+.+|..|... |.   +|.++|+-+..
T Consensus       198 ~d~kiv~~GAGAAgiaia~~l~~~-g~~~~~i~~~D~~G~l  237 (432)
T COG0281         198 KDQKIVINGAGAAGIAIADLLVAA-GVKEENIFVVDRKGLL  237 (432)
T ss_pred             cceEEEEeCCcHHHHHHHHHHHHh-CCCcccEEEEecCCcc
Confidence            367899999999999999999986 65   69999987643

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=86.09  E-value=1  Score=39.66  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|+|+|.+|..+|..|++. |.+|.++.|..
T Consensus       118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~  150 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV  150 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3689999999999999999997 88999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=85.97  E-value=1.2  Score=36.96  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=28.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGG-GSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            47999996 99999999999997 8999999775

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.88  E-value=0.66  Score=41.98  Aligned_cols=35  Identities=34%  Similarity=0.509  Sum_probs=30.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +--||.|||+|..|.-+|+-||-. -..|+|||=.+
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~  387 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  387 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhh-hheeeeeecch
Confidence            345999999999999999999986 56799999654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.79  E-value=1.1  Score=42.52  Aligned_cols=33  Identities=18%  Similarity=0.232  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -++|+|.|..|+++|..|++. |.+|.+.|..+.
T Consensus         7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~   39 (445)
T PRK04308          7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK   39 (445)
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            589999999999999999998 999999997654

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=85.77  E-value=1.2  Score=39.40  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .++|+|+|.++.++++.|++. |. +|.|+.|..
T Consensus       124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~  156 (272)
T PRK12550        124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE  156 (272)
T ss_pred             eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            699999999999999999997 64 699998864

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=85.58  E-value=1.1  Score=39.66  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~   90 (310)
                      -.++|+|+|.+|..+|..|++. | .+|.|+.|..
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~  157 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDL-GVAEITIVNRTV  157 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            4689999999999999999997 7 7899998864

>KOG2018|consensus

Probab=85.58  E-value=1  Score=40.07  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=27.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      =|||||+|..|+-++..|.+.+-.|+.++|=.
T Consensus        76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd  107 (430)
T KOG2018|consen   76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFD  107 (430)
T ss_pred             EEEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence            38999999999999999999733578888754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=85.55  E-value=0.97  Score=39.96  Aligned_cols=32  Identities=13%  Similarity=0.198  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||.|..|.+.|..|.++ |.+|.++++.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999997 89999999753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.40  E-value=1.1  Score=36.20  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=26.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --++|+|-|-.|..+|.+|... |.+|.|.|..|
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence            3699999999999999999997 99999999875

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.35  E-value=0.92  Score=42.95  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|..+|..|.+. |.+|.++|+.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence            489999999999999999997 99999999854

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=85.25  E-value=1.4  Score=38.21  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ...|+|||.|..|+.+|..|+.. |. ++.|+|....
T Consensus        32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEE
Confidence            57999999999999999999997 64 7999997754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=85.18  E-value=1.4  Score=39.86  Aligned_cols=33  Identities=15%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      ..+.|||+|..|.++|+.|+.. +.  .++|+|...
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~   41 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK   41 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence            5899999999999999999987 66  799999854

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.15  E-value=1.2  Score=39.03  Aligned_cols=31  Identities=16%  Similarity=0.148  Sum_probs=27.3

Q ss_pred             cEEEECCC---hhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGG---SAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG---~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      =++|.|++   ..|..+|.+|++. |++|++..+.
T Consensus         9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~   42 (271)
T PRK06505          9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG   42 (271)
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence            48899987   6999999999998 9999998764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=84.96  E-value=1.3  Score=41.70  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --++|||.|..|..+|..|... |.+|++.|..+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp  245 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP  245 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence            3699999999999999999997 89999999765

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=84.83  E-value=1.3  Score=39.32  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCC-CeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g   89 (310)
                      -.++|||+|.++-++|+.|++. | .+|.|+.|.
T Consensus       126 k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt  158 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASL-GVTDITVINRN  158 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            4699999999999999999998 6 479999875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=84.74  E-value=1.4  Score=31.77  Aligned_cols=31  Identities=23%  Similarity=0.488  Sum_probs=27.3

Q ss_pred             EEEECCChhHHHHHHHHhccCC---CeEEEE-cCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAH---WSILLL-EAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g---~~Vlll-E~g~   90 (310)
                      +.|||+|..|...+..|.+. |   .+|+++ ++.+
T Consensus         2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence            57899999999999999997 8   899976 7764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=84.67  E-value=1.1  Score=45.40  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|-|||+|..|.-.|..++.. |++|.|+|..+
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~  368 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP  368 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence            599999999999999999998 99999999765

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=84.65  E-value=1.2  Score=42.63  Aligned_cols=33  Identities=12%  Similarity=0.281  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhccC-CCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVA-HWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g~   90 (310)
                      .+.|||.|..|+++|..||+.+ |.+|+.+|..+
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            4899999999999999999862 57899999754

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=84.49  E-value=1.3  Score=40.53  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=27.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--------CeEEEEcC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--------WSILLLEA   88 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--------~~VlllE~   88 (310)
                      .+.|||+|.-|.+.|..|+++ |        .+|.|-.+
T Consensus         1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~   38 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF   38 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence            378999999999999999998 8        89999977

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=84.48  E-value=1.3  Score=39.50  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||.|.+|..+|..|... |.+|.++++.+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~  185 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS  185 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            5799999999999999999997 89999998874

>PRK06153 hypothetical protein; Provisional

Probab=84.42  E-value=1.3  Score=40.90  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .--|.|||.|..|+.+|..|++.+-.++.|+|......
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~  213 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQ  213 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecc
Confidence            46899999999999999999998445899999875433

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=84.34  E-value=1.5  Score=37.58  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ..-|+|||.|..|+.+|..|+.. |. ++.|+|....
T Consensus        21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~v   56 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDVV   56 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEE
Confidence            56899999999999999999998 65 7999987653

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06057 short chain dehydrogenase; Provisional

Probab=84.34  E-value=1.4  Score=38.06  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|+|+ |..|..+|.+|+++ |++|+++.+..
T Consensus         9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~   41 (255)
T PRK06057          9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP   41 (255)
T ss_pred             EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            5899999 89999999999998 99999998754

>PRK07326 short chain dehydrogenase; Provisional

Probab=84.32  E-value=1.3  Score=37.51  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =++|+|+ |..|..+|.+|++. |.+|+++.+.+
T Consensus         8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~   40 (237)
T PRK07326          8 VALITGGSKGIGFAIAEALLAE-GYKVAITARDQ   40 (237)
T ss_pred             EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence            4788885 89999999999997 99999998753

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=84.31  E-value=1.2  Score=42.98  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-.|+|+|+|.+|+.++.-+... |.+|.++|..+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            45899999999999988777776 88999998764

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=84.12  E-value=1.2  Score=39.84  Aligned_cols=32  Identities=28%  Similarity=0.520  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|-|||+|..|.-.|..+|.. |++|++.|...
T Consensus         5 kv~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~   36 (307)
T COG1250           5 KVAVIGAGVMGAGIAAVFALA-GYDVVLKDISP   36 (307)
T ss_pred             EEEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence            478999999999999999994 99999999873

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=84.03  E-value=1.6  Score=35.18  Aligned_cols=32  Identities=22%  Similarity=0.470  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|-|||-|..|...|.+|.++ |++|.+.++.+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~   34 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP   34 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred             EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence            477999999999999999997 99999999764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02494 adenosylhomocysteinase

Probab=83.80  E-value=1.5  Score=41.53  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .-.++|||.|..|..+|.+|... |.+|+++|..+.
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~  288 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPI  288 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence            34799999999999999999887 899999998753

>PRK08177 short chain dehydrogenase; Provisional

Probab=83.78  E-value=1.7  Score=36.74  Aligned_cols=32  Identities=28%  Similarity=0.526  Sum_probs=28.0

Q ss_pred             EEEEC-CChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIG-GGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++|.| +|..|..+|.+|++. |++|+++.+.+.
T Consensus         4 vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~   36 (225)
T PRK08177          4 ALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQ   36 (225)
T ss_pred             EEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCc
Confidence            67888 688899999999998 999999998753

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=83.58  E-value=2  Score=33.85  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=27.7

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      .|.|||+ |..|.++|+.|... +  .++.|+|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~-~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQ-GLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhC-CCCCceEEeccCc
Confidence            4789999 99999999999996 4  3699999874

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=83.54  E-value=1.2  Score=39.46  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |-|||.|..|...|.+|++. |.+|.+.++.+
T Consensus         2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~   32 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP   32 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            67999999999999999997 99999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06720 hypothetical protein; Provisional

Probab=83.50  E-value=1.8  Score=35.20  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             ccEEEECCC-hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGG-SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG-~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --++|.|++ ..|..+|..|++. |.+|.++++..
T Consensus        17 k~~lVTGa~~GIG~aia~~l~~~-G~~V~l~~r~~   50 (169)
T PRK06720         17 KVAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQ   50 (169)
T ss_pred             CEEEEecCCChHHHHHHHHHHHC-CCEEEEEECCH
Confidence            468899976 5999999999997 99999998763

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=83.34  E-value=1.7  Score=37.51  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=27.9

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+ |..|..+|.+|+++ |++|+++.+..
T Consensus         8 ~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~   40 (257)
T PRK07067          8 VALLTGAASGIGEAVAERYLAE-GARVVIADIKP   40 (257)
T ss_pred             EEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCH
Confidence            4788885 88899999999998 99999998754

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=83.32  E-value=1.6  Score=39.31  Aligned_cols=31  Identities=26%  Similarity=0.507  Sum_probs=26.9

Q ss_pred             EEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      |.|||+|..|.++|+.|+.. +.  .+.|+|...
T Consensus         2 i~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~   34 (307)
T cd05290           2 LVVIGAGHVGSAVLNYALAL-GLFSEIVLIDVNE   34 (307)
T ss_pred             EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence            78999999999999999986 54  699999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.31  E-value=1.5  Score=41.67  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|+|.|..|.++|..|.+. |.+|.+.|+.+
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence            599999999999999999997 99999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		3e-21
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		2e-17
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		2e-17
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		4e-15
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		4e-15
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		4e-15
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		5e-09
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		6e-08

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 133/270 (49%), Gaps = 36/270 (13%)
Query: 56  EYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAG-PDENEV-TDVPSLAAWL-QLSKFDW 112
           ++D+              RL+E    S+L+LEAG  DEN +  + P LA  L   S FDW
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 113 QYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGY 171
            Y T     A  GYN    ++PRG++LGGSS ++YM+ +RG+  D+D + ++ G+ GW +
Sbjct: 62  NYTTT----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 172 DDVLPYFKKSE------DNRN------PYL-AKNRSLKLS-----NGLHD--VEAGQELG 211
           D++  + +K+E      DN N      P +   N S+ +S       L D  +   QE  
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 212 YE---NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVN 268
            E   N D+      G   +  ++  G R S++ A+LRP + R NL + + A VTK++ +
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237
Query: 269 PATKKAYGVQFIRHGIKQ-----TVLARRE 293
             T      + + +  ++     TV A++E
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKKE 267

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 37/277 (13%)
Query: 57  YDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAG---PDENEVTDVPSLAAWLQLSKFDWQ 113
           +DF              RL+E  + ++L++EAG   P++      PS A  L+ SK+DW 
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 114 YKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDD 173
           YKT    R    Y +      RGK LGGSS LNY  +V G++  +D WE  G   W +D 
Sbjct: 67  YKTTMVRRD--DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDP 124
Query: 174 VLPYFKKSED-NRNPYLAKNRSLKLSNG----LHDVEAGQELG--YEN------------ 214
           ++PY +KS   + +P L      K+  G    +   E   E+    EN            
Sbjct: 125 LVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMGQPL 184
Query: 215 -RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKK 273
             +I   +  G      TI RG R   + +FL  V+ + N+ I    H  ++++N A + 
Sbjct: 185 IENIYDGEMDGLTHCCDTIYRGQR---SGSFLF-VKNKPNITIVPEVHSKRLIINEADRT 240
Query: 274 AYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDVI 310
             GV          V A   EL   + R   LS+ V 
Sbjct: 241 CKGV--------TVVTAAGNELNFFADREVILSQGVF 269

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 25/210 (11%)
Query: 74  RLSEVAHWSILLLEAGPDENEVTDVPSLAAW--LQLSKFDWQYKTEPTGRACLGYNQGRC 131
           RLSE     +LL+EAG +E    D+ + AAW  LQ   +DW Y+TE    A  G      
Sbjct: 35  RLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYRTE----AQAGTAGRAH 89
Query: 132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHW-ESLGNPGWGYDDVLPYFKKSEDN------ 184
            W RG+++GGSS L+ M Y+RG+  D+  W ++ G+  WG+D++LP F+  ED+      
Sbjct: 90  HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDG 149
Query: 185 ----RNP---YLAKNRSLKLSNGLHDVEAGQELGYENRD-INGEKQTGFMVAQGTIRRGS 236
                 P   +L  +    L+     +EAG  LG    +  N  +  G       IR G 
Sbjct: 150 IHGKGGPLPIHLPADEVSPLARAF--IEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGR 207
Query: 237 RCSTAKAFL-RPVRKRKNLHIAMRAHVTKI 265
           R + A A+L + VR RKNL I   + V ++
Sbjct: 208 RVTAADAWLTKAVRGRKNLTILTGSRVRRL 237

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 55  REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQL--SKFDW 112
           RE+D+              RLSE    S+ L+EAGPD+  V +V  L  W++L  S +DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGW 169
            Y  EP   G + + +        R KV+GG S  N  +     R D D WE+  G  GW
Sbjct: 72  DYPIEPQENGNSFMRHA-------RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGYENRDI 217
             +   P +K+ E N +            P    N   K   G+  ++A ++ G      
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 218 NGEKQTGFMVAQGT----IRR---GSRCSTAKAFLRPVRKRKN--LHIAMRAHVTKILVN 268
           N    TG  V  G     I R   G+R S++ +++ P+ +++N  L   +RA   + LV 
Sbjct: 185 N----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRA---RQLVF 237
Query: 269 PATKKAYGVQFIRHGIKQT--VLARRE 293
            A ++  GV  +      T  + AR E
Sbjct: 238 DADRRCTGVDIVDSAFGHTHRLTARNE 264

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 55  REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQL--SKFDW 112
           RE+D+              RLSE    S+ L+EAGPD+  V +V  L  W++L  S +DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGW 169
            Y  EP   G + + +        R KV+GG S  N  +     R D D WE+  G  GW
Sbjct: 72  DYPIEPQENGNSFMRHA-------RAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGYENRDI 217
             +   P +K+ E N +            P    N   K   G+  ++A ++ G      
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 218 NGEKQTGFMVAQGT----IRR---GSRCSTAKAFLRPVRKRKN--LHIAMRAHVTKILVN 268
           N    TG  V  G     I R   G+R S++ +++ P+ +++N  L   +RA   + LV 
Sbjct: 185 N----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRA---RQLVF 237
Query: 269 PATKKAYGVQFIRHGIKQT--VLARRE 293
            A ++  GV  +      T  + AR E
Sbjct: 238 DADRRCTGVDIVDSAFGHTHRLTARNE 264

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 115/267 (43%), Gaps = 42/267 (15%)
Query: 55  REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQL--SKFDW 112
           RE+D+              RLSE    S+ L+EAGPD+  V +V  L  W++L  S +DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 113 QYKTEP--TGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGW 169
            Y  EP   G + + +        R KV+GG S  N  +     R D D WE+  G  GW
Sbjct: 72  DYPIEPQENGNSFMRHA-------RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDDVLPYFKKSEDNRN------------PYLAKNRSLKLSNGLHDVEAGQELGYENRDI 217
             +   P +K+ E N +            P    N   K   G+  ++A ++ G      
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKF 184
Query: 218 NGEKQTGFMVAQGT----IRR---GSRCSTAKAFLRPVRKRKN--LHIAMRAHVTKILVN 268
           N    TG  V  G     I R   G+R S++ +++ P+ +++N  L   +RA   + LV 
Sbjct: 185 N----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRA---RQLVF 237
Query: 269 PATKKAYGVQFIRHGIKQT--VLARRE 293
            A ++  GV  +      T  + AR E
Sbjct: 238 DADRRCTGVDIVDSAFGHTHRLTARNE 264

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 113/257 (43%), Gaps = 42/257 (16%)
Query: 74  RLSEVAHWSILLLEAGPDENEVTDV-PSLAAWLQL--SKFDWQYKTEPTGRACLGYNQGR 130
           RL+E  + S+L++E+G  E++   +   L A+  +  S  D  Y+T       L  N   
Sbjct: 37  RLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYET-----VELATNNQT 91
Query: 131 CSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYL 189
                G  LGGS+++N   + R ++   D WE++ GN GW +D+V  Y  ++E  R P  
Sbjct: 92  ALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNA 151
Query: 190 AK-------NRSLKLSNGLHDVEAG-QELG-------------YENRDINGEKQTGFMVA 228
            +       N S    NG   V AG ++ G              E+R +  +K  G    
Sbjct: 152 KQIAAGHYFNASCHGVNGT--VHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDP 209
Query: 229 QG------TIRRGS-RCSTAKAFLRPVRKRKNLHIAMRAHVTKILV--NPATKKAYGVQF 279
            G      T+     R   A+ +L P  +R NL +    +V K+L+  N  T +A GV+F
Sbjct: 210 HGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEF 269
Query: 280 IRH-GIKQTVLARREEL 295
             H G    V A+ E L
Sbjct: 270 GTHKGNTHNVYAKHEVL 286

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 104/274 (37%), Gaps = 39/274 (14%)
Query: 55  REYDFXXXXXXXXXXXXXXRLSEVAHWSILLLEAG---PDENEVTDVPSLAAWLQLSKFD 111
           + YD+              +L+E     +L++E G    ++  + + P+    +  +  D
Sbjct: 23  KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82
Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWG 170
             Y T P        N    +   GK LGGS+++N   + R ++   D WE + G  GW 
Sbjct: 83  QNYLTVPL------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136
Query: 171 YDDVLPYFKKSEDNRNPYLAK-------NRSLKLSNG-------------------LHDV 204
           +D++  Y KK+E  R P  A+       N +   +NG                   L + 
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196
Query: 205 EAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTK 264
            +   +  +   + G  +   M+         R   A+A+L P  +R NL I     V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256
Query: 265 ILVNPATK--KAYGVQF-IRHGIKQTVLARREEL 295
           +L        +A GV F     +   V A+ E L
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVL 290

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-125
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	1e-116
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	1e-116
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-115
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-106
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	4e-94
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	7e-94
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-78
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	5e-21
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	3e-16
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	3e-14
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	3e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	3e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  369 bits (950), Expect = e-125
 Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 44/299 (14%)

Query: 35  YYNYDMYDPENRPIDQ--QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-- 90
           Y      D ++  +    +   + YD+I+ GGG  G  VA++L+E     +L++E G   
Sbjct: 1   YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60

Query: 91  -DENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYML 149
            ++  + + P+    +  +  D  Y T P        N    +   GK LGGS+++N   
Sbjct: 61  SNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDS 114

Query: 150 YVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLAK----------------- 191
           + R ++   D WE + G  GW +D++  Y KK+E  R P  A+                 
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT 174

Query: 192 -----NRSLKLSNGLHD--VEAGQELGYE-NRDINGEKQTGFMVAQGTI-RRGSRCSTAK 242
                  + +  + +    +     LG    +D       G  +    +     R   A+
Sbjct: 175 VQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAAR 234

Query: 243 AFLRPVRKRKNLHIAMRAHVTKILVNPAT--KKAYGVQFIRH-GIKQTVLARREELEVI 298
           A+L P  +R NL I     V K+L        +A GV F  +  +   V A+    EV+
Sbjct: 235 AWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKH---EVL 290

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  346 bits (890), Expect = e-116
 Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 39/275 (14%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV--TDVPSLAAWLQL-SKFDW 112
           ++D++V+G G+AG VVA+RL+E    S+L+LEAG  +  V   + P LA  L   S FDW
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61

Query: 113 QYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGY 171
            Y T        GYN    ++PRG++LGGSS ++YM+ +RG+  D+D + ++ G+ GW +
Sbjct: 62  NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117

Query: 172 DDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHD--------------------VEAGQELG 211
           D++  + +K+E    P    N S +    +H                     +   QE  
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177

Query: 212 YE---NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVN 268
            E   N D+      G   +  ++  G R S++ A+LRP + R NL + + A VTK++ +
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS 237

Query: 269 PATKK-----AYGVQFIRHGIKQTVLARREELEVI 298
             T                    TV A++   EV+
Sbjct: 238 GTTNGLPAFRCVEYAEQEGAPTTTVCAKK---EVV 269

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  345 bits (888), Expect = e-116
 Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 41/282 (14%)

Query: 50  QQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP---DENEVTDVPSLAAWLQ 106
           +    R  D+I+ GGG  G   A+RL+E  + S+L++E+G    D   + +  +    + 
Sbjct: 13  KDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIF 72

Query: 107 LSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-G 165
            S  D  Y+T       L  N        G  LGGS+++N   + R ++   D WE++ G
Sbjct: 73  GSSVDHAYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFG 127

Query: 166 NPGWGYDDVLPYFKKSEDNRNPYLA----------------------KNRSLKLSNGLHD 203
           N GW +D+V  Y  ++E  R P                            +    + +  
Sbjct: 128 NEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVK 187

Query: 204 --VEAGQELGYE-NRDINGEKQTGFMVAQGTIRR-GSRCSTAKAFLRPVRKRKNLHIAMR 259
             + A ++ G    +D       G  +   T+     R   A+ +L P  +R NL +   
Sbjct: 188 ALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTG 247

Query: 260 AHVTKILV--NPATKKAYGVQFIRH-GIKQTVLARREELEVI 298
            +V K+L+  N  T +A GV+F  H G    V A+    EV+
Sbjct: 248 QYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKH---EVL 286

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  343 bits (882), Expect = e-115
 Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 37/269 (13%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP---DENEVTDVPSLAAWLQLSKFDW 112
            +DF+++GGG+AG  VA RL+E  + ++L++EAG    ++      PS A  L+ SK+DW
Sbjct: 6   HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65

Query: 113 QYKTEPTGRACLGYNQGRCSWP--RGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWG 170
            YKT          +  R   P  RGK LGGSS LNY  +V G++  +D WE  G   W 
Sbjct: 66  AYKTTM----VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121

Query: 171 YDDVLPYFKKSEDNRNPYLA-----------------KNRSLKLSNGLHD--VEAGQELG 211
           +D ++PY +KS    +                         +       +   +A + +G
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSMG 181

Query: 212 YE-NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPA 270
                +I   +  G      TI RG R  +       V+ + N+ I    H  ++++N A
Sbjct: 182 QPLIENIYDGEMDGLTHCCDTIYRGQRSGSF----LFVKNKPNITIVPEVHSKRLIINEA 237

Query: 271 TKKAYGVQFIRH-GIKQTVLARREELEVI 298
            +   GV  +   G +    A R   EVI
Sbjct: 238 DRTCKGVTVVTAAGNELNFFADR---EVI 263

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  317 bits (816), Expect = e-106
 Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 32/273 (11%)

Query: 32  GLSYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
             SY ++  YD  +  ++       YD++++GGG++G  +A+ LSE   + +L+LE G  
Sbjct: 8   DFSYLSF-AYDATDLELEG-----SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSL 59

Query: 92  ENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYV 151
                +V +   ++   + +   KT          ++      RG+VLGG+S++N  +Y 
Sbjct: 60  PTAYPNVLTADGFVYNLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYA 115

Query: 152 RGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHD--VEAGQE 209
           R N   Y          W  D V   ++  ED    Y  K  S    +      +EAG  
Sbjct: 116 RANTSIYSAS----GVDWDMDLVNQTYEWVEDTI-VY--KPNSQSWQSVTKTAFLEAGVH 168

Query: 210 LGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILV-N 268
             +     + + + G  +   T         A   L       NL + + A V KI+  N
Sbjct: 169 PNH---GFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSN 224

Query: 269 PATKKAYGVQFIRHGI---KQTVLARREELEVI 298
                A GV +        +  V ++    EVI
Sbjct: 225 APGLTATGVIYRDSNGTPHQAFVRSKG---EVI 254

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  287 bits (737), Expect = 4e-94
 Identities = 76/262 (29%), Positives = 122/262 (46%), Gaps = 33/262 (12%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPSLAAWLQLSKFDWQY 114
             D +++GGGSAG+++A+RLSE     +LL+EAG    +     P+    LQ   +DW Y
Sbjct: 17  NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDY 76

Query: 115 KTEPT----GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHW-ESLGNPGW 169
           +TE      GR           W RG+++GGSS L+ M Y+RG+  D+  W ++ G+  W
Sbjct: 77  RTEAQAGTAGR--------AHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRW 128

Query: 170 GYDDVLPYFKKSEDNR---NPY------LAKNRSLKLSNGLHD--VEAGQELGY-ENRDI 217
           G+D++LP F+  ED+    +        L  +      + L    +EAG  LG       
Sbjct: 129 GWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGH 188

Query: 218 NGEKQTGFMVAQGTIRRGSRCSTAKAFLRP-VRKRKNLHIAMRAHVTKILVNPATKKAYG 276
           N  +  G       IR G R + A A+L   VR RKNL I   + V ++ +     +   
Sbjct: 189 NSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRS 246

Query: 277 VQFIRHGIKQTVLARREELEVI 298
           ++ +       V A     +++
Sbjct: 247 LEVVGRQGSAEVFAD----QIV 264

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  287 bits (737), Expect = 7e-94
 Identities = 73/264 (27%), Positives = 115/264 (43%), Gaps = 29/264 (10%)

Query: 55  REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPS-LAAWLQLSKFDW 112
           RE+D+IV+GGGSAGA VA+RLSE    S+ L+EAGP D      +       L  S +DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71

Query: 113 QYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGY 171
            Y  EP                R KV+GG S  N  +     R D D WE+  G  GW  
Sbjct: 72  DYPIEPQE-----NGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126

Query: 172 DDVLPYFKKSEDNR-----NPYLAKNRSLKLSNG-----LHD--VEAGQELGY-ENRDIN 218
           +   P +K+ E N       P+   +  + L N           ++A ++ G    +   
Sbjct: 127 EAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNT 186

Query: 219 GEKQT-GFMVAQGTIRR-GSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYG 276
           G     G    Q   R  G+R S++ +++ P+ +++N  +       +++ + A ++  G
Sbjct: 187 GTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCTG 245

Query: 277 VQFIR--HGIKQTVLARREELEVI 298
           V  +    G    + AR    EV+
Sbjct: 246 VDIVDSAFGHTHRLTARN---EVV 266

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  248 bits (635), Expect = 1e-78
 Identities = 52/263 (19%), Positives = 83/263 (31%), Gaps = 35/263 (13%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP-DENEVTDVPSLAAWLQ--LSKF-- 110
            YD+I++G G  G + A RLSE     +LLLE G     +              L+KF  
Sbjct: 7   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65

Query: 111 ---DWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNP 167
                   T+        +     +   G ++GG + +N  LY   N  D+       + 
Sbjct: 66  PGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSV 116

Query: 168 GW--GYDDVLPYFKKSEDNR--NPYLAKNRSLKLSNG---LHDVEAGQELGY-ENRDING 219
           GW   + +  PY  K         + + +    L      +  +  GQ        D   
Sbjct: 117 GWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPN 176

Query: 220 EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQF 279
            K   F  +      G R      +L+    R N        V+ ++ N    +  GVQ 
Sbjct: 177 YKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQT 234

Query: 280 IR----HGIKQTVLARREELEVI 298
                       V  +     VI
Sbjct: 235 NDPTLGPNGFIPVTPKG---RVI 254

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 92.0 bits (228), Expect = 5e-21
 Identities = 41/266 (15%), Positives = 68/266 (25%), Gaps = 42/266 (15%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAA------------ 103
               +VIG G   AV A RL E A    L+LE G   N+     ++              
Sbjct: 5   YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63

Query: 104 ----WLQLSKFDWQYKTEPTGRACLGYNQ----GRCSWPRGKVLGGSSVLNYMLYVRGNR 155
                  L  F W            G        + S   G+ +GG S++N  + V   R
Sbjct: 64  KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123

Query: 156 FDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL----HDVEAGQELG 211
             ++            +    YF ++           +  + +          E   + G
Sbjct: 124 SYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAG 180

Query: 212 YE--------NRDINGEKQTGFMVAQG------TIRRGSRCSTAKAFLRPVRKRKNLHIA 257
                     +      +  G +                + S  K +L        + I 
Sbjct: 181 LGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQ 240

Query: 258 MRAHVTKILVNPATKKAYGVQFIRHG 283
               V  I        A  V+     
Sbjct: 241 TLHQVKTIRQTKDGGYALTVEQKDTD 266

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 78.3 bits (192), Expect = 3e-16
 Identities = 45/275 (16%), Positives = 78/275 (28%), Gaps = 43/275 (15%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAA----------WL 105
               +VIG G  GAV A RL++ A     ++E G   +       +            WL
Sbjct: 11  RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69

Query: 106 Q---------LSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
                        F      +                 +G+ +GG S++N  + V   R 
Sbjct: 70  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129

Query: 157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAG----QELGY 212
            ++            +    YF ++              + +        G    Q  G+
Sbjct: 130 YFEEI---LPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGF 186

Query: 213 E--------NRDINGEKQTGFMVAQGTIRRGSRC------STAKAFLRPVRKRKNLHIAM 258
                    + +   ++  G +   G              S  K +L        L I  
Sbjct: 187 TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITT 246

Query: 259 RAHVTKILVNPATKKAYGVQFIRHGIKQTVLARRE 293
              VTK+   PAT   Y V   +   +  V+A + 
Sbjct: 247 LHRVTKVA--PATGSGYSVTMEQIDEQGNVVATKV 279

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 72.2 bits (176), Expect = 3e-14
 Identities = 31/284 (10%), Positives = 69/284 (24%), Gaps = 55/284 (19%)

Query: 52  QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFD 111
            +  +YD +++G G  G   A  L   A + + + + G  ++ +         ++  K  
Sbjct: 42  GMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNI 100

Query: 112 WQYKTEPTGRACLGYNQGRC---------------------------------SWPRGKV 138
            ++     G+                                                +V
Sbjct: 101 DKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRV 160

Query: 139 LGGSSVL-NYMLYVRGNRFDYDHWESLGNPGWG--YDDVLPYFKKSEDNRNPYLAKNRSL 195
           +GG S            RFD +    L          +    + K+E     Y       
Sbjct: 161 VGGMSTAWTCATP----RFDREQRPLLVKDDADADDAEWDRLYTKAE----SYFQTGTDQ 212

Query: 196 KLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFL------RPVR 249
              +  H+         E      + Q   + A          S+A              
Sbjct: 213 FKESIRHN--LVLNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDA 270

Query: 250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFI--RHGIKQTVLAR 291
             +  ++       +++ N    +   +       G +  + A 
Sbjct: 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD 314

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 51 QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          Q +   +D  V+G G  G  +A R++      +L+LE  P
Sbjct: 2  QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP 41

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 37 NYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          ++  +   +  + +      +D++V+G G  G   A  L   +  S+L+++AG 
Sbjct: 4  SHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.97
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.96
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.77
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.64
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.64
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.62
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.59
3dme_A	369	Conserved exported protein; structural genomics, P	99.58
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.56
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.55
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.54
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.53
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.53
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.52
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.49
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.48
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.48
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.47
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.44
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.44
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.44
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.43
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.41
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.38
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.38
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.38
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.38
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.37
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.36
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.36
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.35
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.34
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.33
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.33
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.32
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.29
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.29
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.26
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.25
3atr_A	453	Conserved archaeal protein; saturating double bond	99.24
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.21
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.21
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.21
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.19
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.19
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.15
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.13
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.1
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.09
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.09
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.08
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.08
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.07
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.07
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.06
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.05
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.03
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.99
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.96
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.94
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.93
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.91
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.91
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.9
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.88
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.87
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.81
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.81
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.8
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.8
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.8
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.77
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.77
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.76
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.76
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.73
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.73
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.72
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.71
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.71
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.68
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.64
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.61
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.6
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.6
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.59
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.59
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.58
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.58
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.58
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.58
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.57
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.57
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.55
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.54
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.53
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.47
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.42
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.42
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.4
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.34
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.32
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.31
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.3
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.28
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.28
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.27
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.27
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.27
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.26
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.25
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.25
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.24
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.24
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.23
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.23
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.22
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.21
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.21
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.21
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.19
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.19
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.19
4dna_A	463	Probable glutathione reductase; structural genomic	98.17
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.17
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.16
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.15
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.15
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.15
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.14
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.14
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.13
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.12
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.12
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.12
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.12
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.12
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.12
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.11
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.11
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.1
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.1
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.09
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.09
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.04
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.03
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.03
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.02
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.02
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.01
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.01
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.01
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.01
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.0
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.99
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.99
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.98
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.96
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.94
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.91
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.9
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.89
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.89
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.89
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.86
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.83
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.83
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.81
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.78
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.75
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.71
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.71
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.69
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.68
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.67
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.67
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.66
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.66
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.63
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.62
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.62
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.62
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.61
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.6
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.6
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.59
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.57
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.56
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.56
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.55
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.55
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.54
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.54
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.52
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.46
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.43
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.42
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.41
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.38
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.38
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.38
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.35
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.34
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.31
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.28
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.28
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.28
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.22
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.16
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.14
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.13
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.09
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.06
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.05
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.01
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.01
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.99
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.98
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.94
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.92
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.92
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.89
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.88
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.88
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.86
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.85
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.74
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.73
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.67
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.67
4dna_A	463	Probable glutathione reductase; structural genomic	96.62
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.52
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.5
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.46
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.4
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.31
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.3
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.14
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.11
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.81
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	95.62
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.47
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.43
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.39
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.33
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.21
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.09
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.93
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.8
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	94.79
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.66
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	94.63
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.58
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	94.51
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.44
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.21
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	93.88
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	93.85
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	93.8
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.73
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.67
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.61
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.42
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.36
1ojt_A	482	Surface protein; redox-active center, glycolysis,	93.21
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	93.08
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	93.05
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	92.92
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.89
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	92.87
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.81
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.78
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.76
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.61
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.6
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	92.57
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	92.55
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.47
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.45
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	92.44
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.42
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.29
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.15
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.12
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.11
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.92
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.91
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.82
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	91.78
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	91.75
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	91.71
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	91.68
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	91.59
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.56
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	91.52
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.49
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	91.45
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.37
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.32
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.31
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.24
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	91.07
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.06
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.04
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.75
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.75
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.64
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.63
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.57
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	90.56
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.53
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	90.46
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	90.44
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.41
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	90.4
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.29
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	90.25
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	90.22
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.19
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.14
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	90.06
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.04
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	90.01
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	90.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	89.98
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.91
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.9
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.87
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	89.85
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.65
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	89.46
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	89.41
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	89.37
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.35
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	89.32
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	89.27
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	89.21
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.18
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	89.16
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	89.1
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	89.06
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.05
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	88.93
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	88.9
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.88
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.88
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	88.81
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	88.78
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	88.7
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	88.64
3tl2_A	315	Malate dehydrogenase; center for structural genomi	88.62
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.6
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.47
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	88.4
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	88.34
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	88.18
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	88.06
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.04
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	88.02
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.91
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	87.86
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	87.83
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	87.83
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	87.75
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	87.75
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	87.73
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.7
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	87.66
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.63
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.54
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	87.54
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	87.51
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.24
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	87.18
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	87.15
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.14
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.12
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.09
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	87.05
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	87.02
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.97
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.94
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	86.86
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.86
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	86.81
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	86.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.79
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	86.71
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	86.66
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	86.62
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	86.53
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	86.47
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	86.42
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	86.41
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	86.4
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	86.39
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	86.3
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	86.21
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	86.21
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	86.04
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	86.03
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	86.0
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	85.97
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	85.96
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	85.91
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.88
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	85.81
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	85.78
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.71
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	85.71
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	85.71
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	85.63
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	85.61
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	85.58
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	85.58
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	85.54
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	85.51
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	85.48
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.45
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	85.4
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	85.39
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	85.25
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	85.18
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	85.1
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	85.03
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	84.95
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	84.94
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.93
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	84.82
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	84.81
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	84.79
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	84.76
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	84.72
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	84.61
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	84.58
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	84.54
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	84.51
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	84.45
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	84.4
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	84.34
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	84.2
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	84.2
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	84.17
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	83.98
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	83.94
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	83.9
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	83.86
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	83.75
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	83.74
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	83.74
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	83.71
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	83.6
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	83.59
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	83.58
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	83.53
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	83.45
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	83.45
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	83.44
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	83.33
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	83.32
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	83.25
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	83.18
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	83.17
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	83.16
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	83.11
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	83.07
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	83.05
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	83.03
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	82.99
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	82.93
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	82.9
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	82.63
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	82.6
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	82.6
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	82.59
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	82.55
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	82.48
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	82.42

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=1.1e-46  Score=362.28  Aligned_cols=247  Identities=27%  Similarity=0.399  Sum_probs=209.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC---CCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN---EVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~---~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      .+|||||||||.|||++|.||+|+++++|||||+|+...   +....|.....+..+.++|.|.++|+.     ..++.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~r~~   92 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQTA   92 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCCC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCCCee
Confidence            579999999999999999999998899999999998432   123345555555678899999999885     467888


Q ss_pred             ccCCcccccccccccCeeeecCCccchhhHHhcCCC-CCCcCChHHHHHHhhhcCCCCC--------CCCCCCCCCCCh-
Q psy17311        132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNP-GWGYDDVLPYFKKSEDNRNPYL--------AKNRSLKLSNGL-  201 (310)
Q Consensus       132 ~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~-gw~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~~~g~-  201 (310)
                      .|+|||+|||+|.+|+|+|.|+++.||+.|.++|++ +|+|++++|||+|+|++..+..        .+..+| +.+|| 
T Consensus        93 ~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~h-G~~Gpl  171 (583)
T 3qvp_A           93 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCH-GVNGTV  171 (583)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGS-CSSSSE
T ss_pred             eccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCcccc-CCCCCE
Confidence            999999999999999999999999999999999988 9999999999999999864321        112344 33332 


Q ss_pred             ----------------hHHHHHHHcCCCC-CCCCCCCCccceecccccC-CCcccchhhhhhhcccCCCCcEEecCcEEE
Q psy17311        202 ----------------HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIR-RGSRCSTAKAFLRPVRKRKNLHIAMRAHVT  263 (310)
Q Consensus       202 ----------------~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~-~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~  263 (310)
                                      .++++++++|+++ .|+++....|+...+.++. +|.|.++..+||.++.+|+|++|++++.|+
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~  251 (583)
T 3qvp_A          172 HAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVG  251 (583)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEE
T ss_pred             EecCCCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEE
Confidence                            5677888999997 6888888889888887764 689999999999998899999999999999


Q ss_pred             EEEEcCC--CCeEEEEEEE-ECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        264 KILVNPA--TKKAYGVQFI-RHGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       264 ~I~~~~~--~~~v~GV~~~-~~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +|++++.  +++++||++. .+|+.++++|+|+|||||| ++||+||.
T Consensus       252 rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~  299 (583)
T 3qvp_A          252 KVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE  299 (583)
T ss_dssp             EEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             EEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHH
Confidence            9999842  5799999998 5788899999999999998 99999974

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=8.6e-47  Score=362.38  Aligned_cols=247  Identities=32%  Similarity=0.555  Sum_probs=214.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC--CCCcchhhhHHhhhc-CCCCCccccccCCcccCCCCCCccc
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE--NEVTDVPSLAAWLQL-SKFDWQYKTEPTGRACLGYNQGRCS  132 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~--~~~~~~p~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~  132 (310)
                      +|||||||+|.+||++|.||+|+++++|||||+|+..  .....+|.+...+.. +.++|.|.++|+.    ++.++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~----~~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA----GYNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCG----GGTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCC----CCCCceEe
Confidence            6999999999999999999999779999999999865  334567776665554 7899999999998    78899999


Q ss_pred             cCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCC-------CCCCCCCCCCh---
Q psy17311        133 WPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLA-------KNRSLKLSNGL---  201 (310)
Q Consensus       133 ~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~-------~~~~~~~~~g~---  201 (310)
                      |++|++|||+|++|+|+|.|+++.||+.|.++ |+++|+|++++|||+|+|++..+...       +..+| +.+||   
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~h-G~~Gp~~v  156 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVH-GTNGSVSI  156 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGS-CBSSSEEE
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCcccc-CCCCCeee
Confidence            99999999999999999999999999999988 99999999999999999998754210       12455 55554   


Q ss_pred             -----------hHHHHHHHc--CCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEE
Q psy17311        202 -----------HDVEAGQEL--GYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILV  267 (310)
Q Consensus       202 -----------~~~~~~~~~--G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~  267 (310)
                                 .++++++++  |++. .|+++....|++.++.++.+|.|.++..+||.++.+|+|++|++++.|++|++
T Consensus       157 ~~~~~~~~~~~~~~~a~~~~~~G~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~  236 (566)
T 3fim_B          157 SLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVN  236 (566)
T ss_dssp             BSCSSCCTHHHHHHHHHHHTHHHHCBCSCGGGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEEC
T ss_pred             ecCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEe
Confidence                       677888899  9987 67888888899999988889999999999999988899999999999999999


Q ss_pred             c---CCCCeEEEEEEEEC-C-eEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        268 N---PATKKAYGVQFIRH-G-IKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       268 ~---~~~~~v~GV~~~~~-g-~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +   +.+++++||++.++ | +.++++|+|+|||||| ++||+||.
T Consensus       237 ~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~  282 (566)
T 3fim_B          237 SGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQ  282 (566)
T ss_dssp             CEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHH
T ss_pred             ecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHH
Confidence            7   21379999999864 5 7789999999999998 99999974

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=2.5e-43  Score=339.08  Aligned_cols=240  Identities=31%  Similarity=0.542  Sum_probs=200.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC---CCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE---NEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~---~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      .+|||||||||.|||++|.||+|+++++|||||||+..   .+...+|.....+..++++|.|.++.        .++.+
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~--------~~r~~   76 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM--------VRRDD   76 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEE--------EEETT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEE--------CCccc
Confidence            57999999999999999999999855899999999863   23356677777778889999999873        23444


Q ss_pred             c------cCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCC---CCCCCCCCCCCh-
Q psy17311        132 S------WPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYL---AKNRSLKLSNGL-  201 (310)
Q Consensus       132 ~------~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~g~-  201 (310)
                      .      |+|||+|||+|.+|+|+|.|+++.||+.|.++|+++|+|+++++||+|.|++..+..   .+..+| +.+|| 
T Consensus        77 ~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~h-G~~Gpl  155 (577)
T 3q9t_A           77 YERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKI-GGGGPI  155 (577)
T ss_dssp             EEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGG-CCSCSE
T ss_pred             cccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccC-CCCCCE
Confidence            4      999999999999999999999999999999999999999999999999998865421   112245 54443 


Q ss_pred             ----------------hHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEE
Q psy17311        202 ----------------HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTK  264 (310)
Q Consensus       202 ----------------~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~  264 (310)
                                      .++++++++|+++ .|+++....|+...+.++.+|.|.++. .|+   .+|+|++|++++.|++
T Consensus       156 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~g~R~s~~-~~l---~~r~Nl~v~~~a~v~r  231 (577)
T 3q9t_A          156 PISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQRSGSF-LFV---KNKPNITIVPEVHSKR  231 (577)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSCCCEEEECEESEETTEECCGG-GGS---SSCTTEEEECSEEEEE
T ss_pred             EeeCCCCCcccchHHHHHHHHHHHcCCCcCCCCCCCCcCeEEeecceecCCeEeeHH-HHH---hcCCCeEEEcCcEEEE
Confidence                            3556778999998 678888888998888888888888754 343   5789999999999999


Q ss_pred             EEEcCCCCeEEEEEEEEC-CeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        265 ILVNPATKKAYGVQFIRH-GIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       265 I~~~~~~~~v~GV~~~~~-g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      |++++.+++++||++.+. |+.++++|+|+|||||| ++||+||.
T Consensus       232 i~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~  276 (577)
T 3q9t_A          232 LIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLM  276 (577)
T ss_dssp             EEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             EEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHH
Confidence            999865689999999874 88889999999999997 99999974

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=6.1e-41  Score=324.25  Aligned_cols=246  Identities=28%  Similarity=0.423  Sum_probs=204.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC--cc-hhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV--TD-VPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~--~~-~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      .+||+||||+|.+|+++|.+|++++|++|+|||+|+.....  .. +|.....+..+.++|.|.++|      ++.++.+
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p------~~~~~~~   96 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTN   96 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC------CTTSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc------CCCCcee
Confidence            57999999999999999999999559999999999865422  23 565554455577899999887      4577889


Q ss_pred             ccCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCC--------CCCCCCCCCCCh-
Q psy17311        132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYL--------AKNRSLKLSNGL-  201 (310)
Q Consensus       132 ~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~~~g~-  201 (310)
                      .|++|++|||+|.+|+|+|.|+++.||+.|.+. |+++|+|++++|||+++|+...+..        .+..+| +.+|| 
T Consensus        97 ~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~-g~~Gpl  175 (587)
T 1gpe_A           97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCH-GTNGTV  175 (587)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGC-CBSSSE
T ss_pred             eeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCcccc-CCCCCE
Confidence            999999999999999999999999999999988 9999999999999999999876410        012233 32222 


Q ss_pred             ----------------hHHHHHHHcCCCC-CCCCCCCCccceecccccC-CCcccchhhhhhhcccCCCCcEEecCcEEE
Q psy17311        202 ----------------HDVEAGQELGYEN-RDINGEKQTGFMVAQGTIR-RGSRCSTAKAFLRPVRKRKNLHIAMRAHVT  263 (310)
Q Consensus       202 ----------------~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~-~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~  263 (310)
                                      .+.++++++|++. .++++....|++.++.++. .|.|+++..+||.++++++|++|++++.|+
T Consensus       176 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~  255 (587)
T 1gpe_A          176 QSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVG  255 (587)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEE
T ss_pred             EEccCCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEE
Confidence                            6778889999987 6788878888888877653 789999999999888888999999999999


Q ss_pred             EEEEcCCC--CeEEEEEEE-ECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        264 KILVNPAT--KKAYGVQFI-RHGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       264 ~I~~~~~~--~~v~GV~~~-~~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +|++++.+  ++|+||++. .+|+.++|+|+|+||||+| ++||+||.
T Consensus       256 ~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~  303 (587)
T 1gpe_A          256 KVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE  303 (587)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             EEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHH
Confidence            99997322  589999998 5888889999889999997 99999975

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=1.1e-40  Score=319.35  Aligned_cols=242  Identities=31%  Similarity=0.510  Sum_probs=204.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC-CcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcccc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE-VTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSW  133 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~-~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  133 (310)
                      .+|||||||||.+|+++|.||+|+++++|||||+|+.... ....|.....+..++++|.|.++|+.    ++.++.+.|
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~----~~~~~~~~~   91 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQA----GTAGRAHHW   91 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBG----GGTTBCCEE
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccC----CCCCCeEec
Confidence            4799999999999999999999977899999999976443 33457777777889999999999988    677889999


Q ss_pred             CCcccccccccccCeeeecCCccchhhHHh-cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCC------------
Q psy17311        134 PRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNG------------  200 (310)
Q Consensus       134 ~~g~~lGGss~~n~~~~~r~~~~d~~~w~~-~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g------------  200 (310)
                      ++|++|||+|.+|+|.|.|+++.||+.|.+ .++.+|+|+++++||++.|+.......   .+ +..+            
T Consensus        92 ~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~---~~-~~~g~~~~~~~~~~~~  167 (526)
T 3t37_A           92 ARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDG---IH-GKGGPLPIHLPADEVS  167 (526)
T ss_dssp             CCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSS---SS-CSSCSEECBCCSTTSC
T ss_pred             cCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCCcc---cc-CcCCCcCcccccccCC
Confidence            999999999999999999999999999965 578899999999999999987543211   11 1111            


Q ss_pred             ---hhHHHHHHHcCCCC-CCCCCCCCccceecccccCCCcccchhhhhhhcc-cCCCCcEEecCcEEEEEEEcCCCCeEE
Q psy17311        201 ---LHDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPV-RKRKNLHIAMRAHVTKILVNPATKKAY  275 (310)
Q Consensus       201 ---~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~-~~~~g~~v~~~~~V~~I~~~~~~~~v~  275 (310)
                         ..+.++++++|++. .+.+.....++..++..+..|.+.+...+++.+. ..++|++|++++.|++|+.+  +++++
T Consensus       168 p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~--~~~a~  245 (526)
T 3t37_A          168 PLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVR  245 (526)
T ss_dssp             HHHHHHHHHHHHTTCCBCSSSCSSCCBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEE--TTEEE
T ss_pred             HHHHHHHHHHHHcCCCcccCCCCCcccccccccccccCCcccccccccccccccCCCCeEEEeCCEEEEEEec--CCeEE
Confidence               15677888999987 5666667778888888888899999888887654 56899999999999999999  89999


Q ss_pred             EEEEEECCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        276 GVQFIRHGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       276 GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      ||++..+++...+.| |+|||||| ++||+||.
T Consensus       246 gv~~~~~~~~~~~~a-~~VILsAGai~SP~LLl  277 (526)
T 3t37_A          246 SLEVVGRQGSAEVFA-DQIVLCAGALESPALLM  277 (526)
T ss_dssp             EEEEEETTEEEEEEE-EEEEECSHHHHHHHHHH
T ss_pred             EEEEEecCceEEEee-cceEEcccccCCcchhh
Confidence            999998888888888 59999998 99999985

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=1.2e-39  Score=313.00  Aligned_cols=245  Identities=29%  Similarity=0.461  Sum_probs=205.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC--CcchhhhHHhhhcCCCCCccccccCCcccCCCCCCccc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE--VTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCS  132 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~--~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  132 (310)
                      .+||+||||+|.+|+++|.+|++++|.+|+|||+|+....  ....|........+.++|.|.++|+.    + .++.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~----~-~~~~~~   86 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQE----N-GNSFMR   86 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCS----S-SCTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccC----C-CCceEE
Confidence            4799999999999999999999977899999999976543  23345444334467789999998887    3 677899


Q ss_pred             cCCcccccccccccCeeeecCCccchhhHHh-cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCCh----------
Q psy17311        133 WPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL----------  201 (310)
Q Consensus       133 ~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~-~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~----------  201 (310)
                      |++|++|||+|.+|+|.|.|+.+.||+.|.+ +|+++|+|++++|||+++|+...+. ....+| +..|+          
T Consensus        87 ~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~-~~~~~~-g~~Gpl~v~~~~~~~  164 (546)
T 2jbv_A           87 HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-PDAPHH-GDSGPVHLMNVPPKD  164 (546)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCB-TTBTTS-CBSCSEEEEECCSCC
T ss_pred             eecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCC-CccccC-CCCCCEEEecCCCCC
Confidence            9999999999999999999999999999987 8999999999999999999876521 102233 33222          


Q ss_pred             ----hHHHHHHHcCCCCCCCCCCC--CccceecccccC-CCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCC-Ce
Q psy17311        202 ----HDVEAGQELGYENRDINGEK--QTGFMVAQGTIR-RGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPAT-KK  273 (310)
Q Consensus       202 ----~~~~~~~~~G~~~~~~~~~~--~~g~~~~~~~~~-~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~-~~  273 (310)
                          .+.++++++|++..+.++..  +.|++.++.++. +|.|+++..+|+.++.++.|++|++++.|++|+++  + ++
T Consensus       165 ~~~~~~~~a~~~~G~~~~d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~--~~~~  242 (546)
T 2jbv_A          165 PTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD--ADRR  242 (546)
T ss_dssp             HHHHHHHHHHHHTTCCBCCSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEEC--TTSB
T ss_pred             HHHHHHHHHHHHCCCCccCCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEEC--CCCe
Confidence                67778889999877777666  788888888888 89999999999988777899999999999999998  5 89


Q ss_pred             EEEEEEEEC--CeEEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        274 AYGVQFIRH--GIKQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       274 v~GV~~~~~--g~~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      ++||++.++  |+.++|+|+|+||+|+| ++||+||..
T Consensus       243 ~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~  280 (546)
T 2jbv_A          243 CTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLML  280 (546)
T ss_dssp             EEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhh
Confidence            999999865  77889999889999998 799999753

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=4.3e-34  Score=272.28  Aligned_cols=245  Identities=18%  Similarity=0.181  Sum_probs=183.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhh---hHHhh-hcCCCCCccccccCCc--------
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPS---LAAWL-QLSKFDWQYKTEPTGR--------  121 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~---~~~~~-~~~~~~w~~~~~~~~~--------  121 (310)
                      ..+||+||||+|.+|+++|.+|++. |++|+|||+|.....  ..|.   +.... ..++++|.|.++||..        
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~   85 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   85 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCC--CCCcccccccccccccccccccccccccccccccccc
Confidence            4579999999999999999999996 999999999975331  1221   11111 2346899999888721        


Q ss_pred             -----ccCCC----CCCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChH-HHHHHhhhcCCCCCCC
Q psy17311        122 -----ACLGY----NQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVL-PYFKKSEDNRNPYLAK  191 (310)
Q Consensus       122 -----~~~~~----~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~-~~~~~~e~~~~~~~~~  191 (310)
                           .+.++    .++.+.|++|++|||+|.+|+|+|.|+++.||+.|.    ++|.|++++ |||+++|+...+....
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~~  161 (507)
T 1coy_A           86 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVNNID  161 (507)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCCC
T ss_pred             ccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCCCCCC
Confidence                 11222    567889999999999999999999999999999995    478999999 9999999987653221


Q ss_pred             CCCCCCC----CChhHHHHHHHcCC-----CC-CCCCC---------CCCccceecccccCCCcccchhhhhhhcccCCC
Q psy17311        192 NRSLKLS----NGLHDVEAGQELGY-----EN-RDING---------EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRK  252 (310)
Q Consensus       192 ~~~~~~~----~g~~~~~~~~~~G~-----~~-~~~~~---------~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~  252 (310)
                      ..+++..    ....+.++++++|+     |. .++++         ..+..++.|...|.+| |+++..+|+.++.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~~  240 (507)
T 1coy_A          162 QAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAATG  240 (507)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHTT
T ss_pred             CccccccccchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCccccccccccCCCC-CcChHHHHHHHHHhcC
Confidence            1110000    01257788899999     44 23322         1223445556667889 9999999998877778


Q ss_pred             CcEEecCcEEEEEEEcCCCC-eEEEEEEEE-CC---eEEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        253 NLHIAMRAHVTKILVNPATK-KAYGVQFIR-HG---IKQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       253 g~~v~~~~~V~~I~~~~~~~-~v~GV~~~~-~g---~~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      |++|+++++|++|++++ ++ +++||++.+ +|   +.++++|+ +||+||| ++||+||..
T Consensus       241 n~~i~~~~~v~~i~~~~-~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~lL~~  300 (507)
T 1coy_A          241 KLTITTLHRVTKVAPAT-GSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVS  300 (507)
T ss_dssp             CEEEECSEEEEEEEECS-SSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHH
T ss_pred             CcEEEeCCEEEEEEECC-CCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHHHHh
Confidence            99999999999999984 24 899999986 55   46789996 9999997 889999753

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=8.2e-34  Score=270.20  Aligned_cols=246  Identities=19%  Similarity=0.145  Sum_probs=183.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC-C--cchhhhHHhhhcCCCCCccccccCC-----------
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE-V--TDVPSLAAWLQLSKFDWQYKTEPTG-----------  120 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~-~--~~~p~~~~~~~~~~~~w~~~~~~~~-----------  120 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|||+++.... .  ...+... ......++|.|.++|+.           
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~-~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~   81 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVN   81 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccccccccccccccc
Confidence            479999999999999999999996 999999999984331 1  1222111 12234578999887762           


Q ss_pred             ---cccCCC----CCCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChH-HHHHHhhhcCCCCCCCC
Q psy17311        121 ---RACLGY----NQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVL-PYFKKSEDNRNPYLAKN  192 (310)
Q Consensus       121 ---~~~~~~----~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~-~~~~~~e~~~~~~~~~~  192 (310)
                         ..+.++    .++.+.|++|++|||+|.+|+|+|.|+++.||+.|.    ++|.|++++ |||+++|+...+.....
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~~~  157 (504)
T 1n4w_A           82 RNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHIDT  157 (504)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCCCH
T ss_pred             ccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCCCCCCc
Confidence               122222    567889999999999999999999999999999995    579999999 99999999876432211


Q ss_pred             CCCC-C---CCChhHHHHHHHcCC-----CC-CCCCC---------CCCccceecccccCCCcccchhhhhhhcccCCCC
Q psy17311        193 RSLK-L---SNGLHDVEAGQELGY-----EN-RDING---------EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKN  253 (310)
Q Consensus       193 ~~~~-~---~~g~~~~~~~~~~G~-----~~-~~~~~---------~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g  253 (310)
                      .++. +   .....+.++++++|+     +. .++++         ..+..++.|...|.+| |.++..+|+.++.++.|
T Consensus       158 ~~~~~~~~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n  236 (504)
T 1n4w_A          158 KWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGK  236 (504)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTS
T ss_pred             ccccCCCcchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHhcCC
Confidence            1110 0   001256788899998     43 23321         1223444555667889 99999999988777778


Q ss_pred             cEEecCcEEEEEEEcCCCCeEEEEEEEE-CC---eEEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        254 LHIAMRAHVTKILVNPATKKAYGVQFIR-HG---IKQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       254 ~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g---~~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      ++|+++++|++|++++++++++||++.+ +|   +.++++|+ +||+|+| ++||+||..
T Consensus       237 ~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~lL~~  295 (504)
T 1n4w_A          237 VTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVR  295 (504)
T ss_dssp             EEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHH
T ss_pred             cEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHHHHHh
Confidence            9999999999999984234899999985 56   56789996 9999997 889998753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.97  E-value=5e-32  Score=259.48  Aligned_cols=235  Identities=24%  Similarity=0.300  Sum_probs=163.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC--CCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN--EVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~--~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      ..+|||||||||.+|+++|.||+|  |++|||||+|+...  +....|........ ..+| |.++++.    ...++.+
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~-~~~~-~~t~~q~----~~~~~~~   95 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ-QEDD-GKTPVER----FVSEDGI   95 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHH-SCCC-SSSSEEE----EECTTSC
T ss_pred             cCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhcc-CCCc-CcCCCcc----ccCCCcc
Confidence            357999999999999999999999  79999999998643  22222322221111 1235 5566665    3345668


Q ss_pred             ccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcC
Q psy17311        132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELG  211 (310)
Q Consensus       132 ~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G  211 (310)
                      .|++|+++||+|.+|+|.|.|+++.||+.+   | .+|+|+++++||++.|+.........++     ...+.++++++|
T Consensus        96 ~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~~~~~~~~~~-----~~~~~~a~~~~G  166 (536)
T 1ju2_A           96 DNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTIVYKPNSQSW-----QSVTKTAFLEAG  166 (536)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHHCBCCCCCHH-----HHHHHHHHHHTT
T ss_pred             eeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcccCCCCCCCcH-----HHHHHHHHHHcC
Confidence            899999999999999999999999999742   2 2499999999999999865321100111     115677888899


Q ss_pred             CCCC-CCCCCCCccceec-ccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCC-CCeEEEEEEEE-CCeEEE
Q psy17311        212 YENR-DINGEKQTGFMVA-QGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPA-TKKAYGVQFIR-HGIKQT  287 (310)
Q Consensus       212 ~~~~-~~~~~~~~g~~~~-~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~-~~~v~GV~~~~-~g~~~~  287 (310)
                      ++.. ..+.....|.... .....+|.|+++.. ++ +.+++.|++|+++++|++|++++. +++++||++.+ +|+.++
T Consensus       167 ~~~~~~~~~~~~~g~~~g~~~~~~~g~r~s~~~-~~-~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~  244 (536)
T 1ju2_A          167 VHPNHGFSLDHEEGTRITGSTFDNKGTRHAADE-LL-NKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQ  244 (536)
T ss_dssp             CCCEEEECCBCCSEEEECEESBCTTSBBCCGGG-GG-GGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEE
T ss_pred             CCCCCCcccCCCCCceeeeEEECCCCeEecHHH-hh-hhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEE
Confidence            8541 1110111111110 11125677887766 66 446789999999999999999841 24999999986 676666


Q ss_pred             EE--cCeEEEEecc-CCchhhhh
Q psy17311        288 VL--ARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       288 i~--A~k~VIlaaG-~~s~~ll~  307 (310)
                      ++  ++|+||+|+| ++||+||.
T Consensus       245 ~~v~a~k~VILaaGa~~sp~lL~  267 (536)
T 1ju2_A          245 AFVRSKGEVIVSAGTIGTPQLLL  267 (536)
T ss_dssp             EEEEEEEEEEECCHHHHHHHHHH
T ss_pred             EEeccCCEEEEcCcccCCHHHHH
Confidence            64  6689999997 88999975

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.96  E-value=7.4e-29  Score=238.37  Aligned_cols=239  Identities=24%  Similarity=0.303  Sum_probs=164.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCc--ch-hhhHHhhhcCCCCCc-----cccccCCcccCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT--DV-PSLAAWLQLSKFDWQ-----YKTEPTGRACLGY  126 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~--~~-p~~~~~~~~~~~~w~-----~~~~~~~~~~~~~  126 (310)
                      .+|||||||+|++|+++|.+|++. |++|+|||+|+......  .. +..........+++.     ....+..    ..
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~-g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~   80 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP----FW   80 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC----TT
T ss_pred             CceeEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCc----cc
Confidence            579999999999999999999997 99999999997543110  00 000000000001000     0000000    00


Q ss_pred             CCCccccCCcccccccccccCeeeecCCccchhh---HHhcCCCCCCcCChHHHHHHhhhcCCCCCCC---C-CCCCCCC
Q psy17311        127 NQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDH---WESLGNPGWGYDDVLPYFKKSEDNRNPYLAK---N-RSLKLSN  199 (310)
Q Consensus       127 ~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~---w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~---~-~~~~~~~  199 (310)
                      ......+++|+++||+|.+|+|++.|+.+.||+.   |    ..+|+|++  +||++.++........   . .|. ...
T Consensus        81 ~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~-~~~  153 (546)
T 1kdg_A           81 WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSRLPSTDHPSTDGQRYL-EQS  153 (546)
T ss_dssp             BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHHSCCBSCCSTTSCCCS-CHH
T ss_pred             cccccccccceeecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHhcCCCCccCCCCCCccC-CHH
Confidence            0123567899999999999999999999999987   8    35788888  9999998865321100   0 011 111


Q ss_pred             ChhHHHHHHHcCCCCCCCC-C--CCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEE
Q psy17311        200 GLHDVEAGQELGYENRDIN-G--EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYG  276 (310)
Q Consensus       200 g~~~~~~~~~~G~~~~~~~-~--~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~G  276 (310)
                      ...+.++++++|++..+.+ +  ....|++.++.++.+|.|.++..+|+.++.++.|++|+++++|++|+.+  +++++|
T Consensus       154 ~~~~~~a~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~--~~~~~g  231 (546)
T 1kdg_A          154 FNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILG  231 (546)
T ss_dssp             HHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE--TTEEEE
T ss_pred             HHHHHHHHHHCCCCcCCccCCcCCCCcEEeeeeeccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEe--CCEEEE
Confidence            1256677888998653322 1  1345677777777889999988899988877889999999999999998  789999


Q ss_pred             EEEEE--CCe--EEEEEcCeEEEEecc-CCchhhhh
Q psy17311        277 VQFIR--HGI--KQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       277 V~~~~--~g~--~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      |++.+  +|+  ..++++.++||+|+| ++||+||.
T Consensus       232 V~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~  267 (546)
T 1kdg_A          232 VQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF  267 (546)
T ss_dssp             EEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             EEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHH
Confidence            99876  354  345656679999998 78999875

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.77  E-value=1.5e-18  Score=165.33  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CC-chhhhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FR-TTTLSRD  308 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~-s~~ll~~  308 (310)
                      ..|.+.+++.|++|+++++|++|+.++ +++|+||++.++++.++|+|+|.||+|+| +. +++++++
T Consensus       206 ~~L~~~~~~~Gv~i~~~t~v~~L~~~~-~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~~  272 (510)
T 4at0_A          206 KPLVETAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIEA  272 (510)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEECT-TCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred             HHHHHHHHHcCCEEEecCEeEEEEECC-CCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHHH
Confidence            344455566799999999999999974 58999999988888888999768888886 53 5555544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.64  E-value=8.5e-16  Score=149.27  Aligned_cols=244  Identities=13%  Similarity=0.077  Sum_probs=130.8

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCc------chhh-------hHHhhh----cC------
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT------DVPS-------LAAWLQ----LS------  108 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~------~~p~-------~~~~~~----~~------  108 (310)
                      .|..+|||||||+|++|+++|++|++. |++|+|||+++...+..      ....       +.....    ..      
T Consensus        42 ~~~~~~dvvIIG~G~aGl~aA~~l~~~-G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~  120 (623)
T 3pl8_A           42 GMDIKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNT  120 (623)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCC
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhC-CCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhccccccc
Confidence            344579999999999999999999997 99999999987655311      0000       000000    00      


Q ss_pred             -------CCCCccccccCCcccCCCCCCccccC----CcccccccccccCeeeecCCccchhhHHhcCCCCC-CcCChHH
Q psy17311        109 -------KFDWQYKTEPTGRACLGYNQGRCSWP----RGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW-GYDDVLP  176 (310)
Q Consensus       109 -------~~~w~~~~~~~~~~~~~~~~~~~~~~----~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw-~~~~~~~  176 (310)
                             ..+|......-...+ ......+.+.    .+..+||.+.++.....|..+.+  .+..+...++ .++++.+
T Consensus       121 ~~~~~~~~~~~~~~~v~l~~g~-~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e--~~~~l~~~~v~~~~~l~~  197 (623)
T 3pl8_A          121 LVVDTLSPTSWQASTFFVRNGS-NPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQ--RPLLVKDDADADDAEWDR  197 (623)
T ss_dssp             CCCCCSCTTSCCCSSCCSCTTC-CTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGG--SCCSSTTCHHHHHHHHHH
T ss_pred             cccccccccccccCcEEeccCC-CcccccchhhhhhcccccccCcceeeccccccCChHH--hhhhhcccCccChhhHHH
Confidence                   001111100000000 0000011222    45678898888888877766542  1111111111 3456677


Q ss_pred             HHHHhhhcCCCCCCCCCCCCCCC-ChhHHHHHHHcCCCCCCCCCCCCccceecccccCCCcccchhhhhhhcc------c
Q psy17311        177 YFKKSEDNRNPYLAKNRSLKLSN-GLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPV------R  249 (310)
Q Consensus       177 ~~~~~e~~~~~~~~~~~~~~~~~-g~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~------~  249 (310)
                      +|.+.+.......  ..+. ... .......+.+.......+. .......   .......++++..+++.+.      .
T Consensus       198 ~~~~~~~l~~vgg--~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~~p~a~~---~~~~~~~r~s~~~~~l~~~~~l~~~~  270 (623)
T 3pl8_A          198 LYTKAESYFQTGT--DQFK-ESIRHNLVLNKLTEEYKGQRDFQ-QIPLAAT---RRSPTFVEWSSANTVFDLQNRPNTDA  270 (623)
T ss_dssp             HHHHHHHHHTEES--CTTT-TCHHHHHHHHHHHHHTTTTSCCE-ECCEEEE---EEETTEEEECCHHHHCCCCCEEETTE
T ss_pred             HHHHHHHhccccc--cccc-CccccccchHHHHHhhhhccccc-ccchhhc---cCCCCccccchHHhhhhhhhcchhhc
Confidence            7777666543211  0111 100 0011111221111000000 0000000   0011234667777888776      6


Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +++|++|++++.|++|+.++.+++++||++.+  +|+.+++.|+ +||+|+| +.+|+||.
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~-~VIlaaG~~~s~~lL~  330 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLV  330 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEE-EEEECSCTTHHHHHHH
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECC-EEEEcCCCcCCHHHHH
Confidence            66799999999999999984345999999986  6777889996 9999998 89998875

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.64  E-value=4.4e-16  Score=150.04  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=44.6

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCC-CeEEEEEEEE-CCeEEEEEcCeEEEEeccC
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPAT-KKAYGVQFIR-HGIKQTVLARREELEVISF  300 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~-~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~  300 (310)
                      ..|...+++.|++|+++++|++|+.+  + ++|+||++.+ +|+..+++| +.||+|+|-
T Consensus       254 ~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A-~~VVlAtGg  310 (566)
T 1qo8_A          254 DTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGA-KSVVLATGG  310 (566)
T ss_dssp             HHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEE-EEEEECCCC
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEc-CEEEEecCC
Confidence            33445556679999999999999998  6 8999999986 777778999 488888873

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.62  E-value=5.2e-15  Score=142.67  Aligned_cols=56  Identities=13%  Similarity=0.031  Sum_probs=44.8

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccC
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISF  300 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~  300 (310)
                      ..|...+++.|++|+++++|++|+.++ +++|+||++.+ +|+..+|+|+ .||+|+|.
T Consensus       259 ~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~i~a~-~VVlAtGg  315 (571)
T 1y0p_A          259 QVLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKAD-AVILATGG  315 (571)
T ss_dssp             HHHHHHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECS-EEEECCCC
T ss_pred             HHHHHHHHhcCCEEEeCCEeeEeEEcC-CCeEEEEEEEeCCCcEEEEECC-eEEEeCCC
Confidence            344455566799999999999999872 38999999987 7877789997 58888864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.59  E-value=1.7e-14  Score=139.87  Aligned_cols=55  Identities=13%  Similarity=0.066  Sum_probs=44.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      |...+.+.|++|+++++|++|+.+  +++|.||.+.+  +|+.+.++|+ .||+|+|-++
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~  217 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAK-NTVIATGGYG  217 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEE-EEEECCCCCG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCccc
Confidence            334456789999999999999998  88999999875  6777789996 7888886433

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.58  E-value=8.6e-16  Score=139.26  Aligned_cols=61  Identities=10%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      |.+.+++.|++|+++++|++|..+  ++.+..|.+. +|+..+++|+ .||+|+|.|+.+|++.+
T Consensus       156 l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~-~g~~~~~~a~-~VV~A~G~~s~~l~~~~  216 (369)
T 3dme_A          156 YQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFG-GAEPMTLSCR-VLINAAGLHAPGLARRI  216 (369)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEEC-TTSCEEEEEE-EEEECCGGGHHHHHHTE
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEEC-CCceeEEEeC-EEEECCCcchHHHHHHh
Confidence            334556789999999999999987  4443446543 5544578886 89999999999988754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.56  E-value=4.2e-14  Score=137.99  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=42.2

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFR  301 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~  301 (310)
                      ..+.+.|++|+++++|++|+.+  +++|.||.+.+  +|+.+.++|+ .||+|+|-+
T Consensus       166 ~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~  219 (660)
T 2bs2_A          166 NECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGY  219 (660)
T ss_dssp             HHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECCCCC
T ss_pred             HHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcC-EEEEccCcc
Confidence            3445579999999999999998  78999998874  6777789997 788887633

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.55  E-value=6.9e-14  Score=135.11  Aligned_cols=54  Identities=11%  Similarity=-0.009  Sum_probs=42.7

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ..+++.|++|+++++|++|+.++ ++++.||.+.+  +|+...++|+ .||+|+|-++
T Consensus       151 ~~~~~~gv~i~~~~~v~~L~~~~-~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGg~~  206 (588)
T 2wdq_A          151 QQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKAR-ATVLATGGAG  206 (588)
T ss_dssp             HHHHHTTCEEEETEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEEE-EEEECCCCCG
T ss_pred             HHHHhCCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCeEEEEEcC-EEEECCCCCc
Confidence            44455799999999999999853 57899999874  5767789995 8888887544

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.54  E-value=2.3e-14  Score=138.18  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCC-CeEEEEEEEE-CCeEEEEEcCeEEEEecc-CC-chhhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPAT-KKAYGVQFIR-HGIKQTVLARREELEVIS-FR-TTTLSR  307 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~-~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~~-s~~ll~  307 (310)
                      ..|...+++.|++|+++++|++|+.+  + ++|+||++.+ +|+...|+|+ .||+|+| +. .+++++
T Consensus       259 ~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~-~VVlAtGg~~~~~~~~~  324 (572)
T 1d4d_A          259 QVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNERVS  324 (572)
T ss_dssp             HHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHH
T ss_pred             HHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcC-EEEEeCCCCccCHHHHH
Confidence            34445556679999999999999988  6 8999999986 7777789995 7888886 43 344443

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.53  E-value=4.1e-14  Score=135.99  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++.|++|+++++|++|..+  ++++.||++.+  +|+...++|+ .||+|+|.|+.+|++.
T Consensus       178 ~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~~s~~l~~~  238 (561)
T 3da1_A          178 KEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAK-KVVNAAGPWVDTLREK  238 (561)
T ss_dssp             HHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEE-EEEECCGGGHHHHHHT
T ss_pred             HHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECC-EEEECCCcchHHHHHh
Confidence            4456679999999999999998  88999999987  5667789995 8999999999888753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.53  E-value=9.7e-14  Score=132.80  Aligned_cols=51  Identities=12%  Similarity=0.160  Sum_probs=41.0

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCC------eEEEEEEEE--CCeEEEEEcCeEEEEeccCCc
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATK------KAYGVQFIR--HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~------~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ++.|++|+++++|++|+.++ ++      ++.||.+.+  +|+.+.++|+ .||+|+|-++
T Consensus       150 ~~~gv~i~~~~~v~~L~~~~-~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~  208 (540)
T 1chu_A          150 NHPNIRVLERTNAVDLIVSD-KIGLPGTRRVVGAWVWNRNKETVETCHAK-AVVLATGGAS  208 (540)
T ss_dssp             HCTTEEEECSEEEEEEEEGG-GTTCCSSCBEEEEEEEETTTTEEEEEECS-EEEECCCCCG
T ss_pred             cCCCCEEEeCcEEEEEEEcC-CCCcccCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCcc
Confidence            33799999999999999842 45      899999886  6777789996 7888887444

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.52  E-value=5.8e-14  Score=130.78  Aligned_cols=58  Identities=9%  Similarity=0.065  Sum_probs=47.2

Q ss_pred             hhhcccCCCCcEEecCc---EEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRA---HVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~---~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      .|.+.+++.|++|++++   +|++|+.+  +++++||++. +|+  +++|+ .||+|+|.|+++|+.
T Consensus       166 ~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~-~G~--~i~Ad-~VV~AtG~~s~~l~~  226 (438)
T 3dje_A          166 AAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTA-DGK--IWRAE-RTFLCAGASAGQFLD  226 (438)
T ss_dssp             HHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEET-TTE--EEECS-EEEECCGGGGGGTSC
T ss_pred             HHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEEC-CCC--EEECC-EEEECCCCChhhhcC
Confidence            34445567899999999   99999998  7899999875 453  57887 799999999998875

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.49  E-value=5.3e-13  Score=129.20  Aligned_cols=53  Identities=13%  Similarity=0.061  Sum_probs=42.1

Q ss_pred             cccCCCC-cEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc
Q psy17311        247 PVRKRKN-LHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       247 ~~~~~~g-~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ..+++.| ++|+++++|++|+.+  ++++.||.+.+  +|+.+.++|+ .||+|+|.++
T Consensus       142 ~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~s  197 (602)
T 1kf6_A          142 QTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAG  197 (602)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-CEEECCCCCG
T ss_pred             HHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCCc
Confidence            3344455 999999999999998  78999998764  6777789997 6888887544

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.48  E-value=2.8e-13  Score=132.16  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=42.2

Q ss_pred             hhhcccCCC-Cc-EEecCcEEEEEEEcCCCC---eEEEEEEEE--CCeEEEEEcCeEEEEeccCCc
Q psy17311        244 FLRPVRKRK-NL-HIAMRAHVTKILVNPATK---KAYGVQFIR--HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       244 ~l~~~~~~~-g~-~v~~~~~V~~I~~~~~~~---~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      .|...+++. |+ +|++++.|++|+.+  ++   +|+||.+.+  +|+.+.|+|+ .||+|+|-++
T Consensus       156 ~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGG~~  218 (643)
T 1jnr_A          156 IIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAK-AVILATGGAT  218 (643)
T ss_dssp             HHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBC
T ss_pred             HHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcC-EEEECCCccc
Confidence            343444555 99 99999999999997  55   999998754  6766789995 7888886333

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.48  E-value=1e-13  Score=135.24  Aligned_cols=47  Identities=13%  Similarity=0.077  Sum_probs=37.9

Q ss_pred             CcEEecCcEEEEEEEcCCC--CeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        253 NLHIAMRAHVTKILVNPAT--KKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       253 g~~v~~~~~V~~I~~~~~~--~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      |++|+.++.|++|+.++ +  ++|.||.+.+  +|+.+.|+|+ .||+|+| +.
T Consensus       182 gV~i~~~~~v~dLi~~~-~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVLATGG~g  233 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDK-NTPNRIAGAVGFNLRANEVHIFKAN-AMVVACGGAV  233 (662)
T ss_dssp             TTTEECSEEECCCEECS-SSTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBC
T ss_pred             CcEEEEceEEEEEEEeC-CccceEEEEEEEEcCCCcEEEEEeC-EEEECCCccc
Confidence            99999999999999983 2  3999998864  5777889996 6777775 54

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.47  E-value=9.1e-14  Score=126.97  Aligned_cols=57  Identities=11%  Similarity=0.099  Sum_probs=45.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |.+.+++.|++++++++|++|..+  ++++.||++. +|   .++|+ .||+|+|.|++.|++.
T Consensus       155 l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~-~g---~i~a~-~VV~A~G~~s~~l~~~  211 (382)
T 1y56_B          155 FAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTN-KG---IIKTG-IVVNATNAWANLINAM  211 (382)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEET-TE---EEECS-EEEECCGGGHHHHHHH
T ss_pred             HHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEEC-Cc---EEECC-EEEECcchhHHHHHHH
Confidence            334556689999999999999988  7788888653 33   68887 8999999999887653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.44  E-value=6.1e-13  Score=128.14  Aligned_cols=58  Identities=7%  Similarity=0.012  Sum_probs=49.2

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      ..+++.|++|+++++|++|..+  ++++.||++.+  +++...|+|+ .||+|+|.|+..|++
T Consensus       196 ~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~ws~~l~~  255 (571)
T 2rgh_A          196 KKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAK-LVINTSGPWVDKVRN  255 (571)
T ss_dssp             HHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBS-CEEECCGGGHHHHHT
T ss_pred             HHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcC-EEEECCChhHHHHHH
Confidence            3456689999999999999998  78999999876  5665679996 899999999988865

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.44  E-value=2.1e-13  Score=125.39  Aligned_cols=57  Identities=18%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |...+++.|++++++++|++|..+  ++++.+|++. +|   .++|+ .||+|+|.+++.|++.
T Consensus       180 l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~-~g---~~~a~-~vV~a~G~~s~~l~~~  236 (405)
T 2gag_B          180 FARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTT-RG---TIHAG-KVALAGAGHSSVLAEM  236 (405)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEET-TC---CEEEE-EEEECCGGGHHHHHHH
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeC-Cc---eEECC-EEEECCchhHHHHHHH
Confidence            334456689999999999999988  7788888653 44   57885 8999999999877653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.44  E-value=7.1e-14  Score=127.30  Aligned_cols=56  Identities=9%  Similarity=-0.021  Sum_probs=42.7

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |...+++.|++|+++++|++|..+  +++ .+|++. +|   +++|+ .||+|+|.|+++|++.
T Consensus       160 l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~-~g---~i~a~-~VV~A~G~~s~~l~~~  215 (381)
T 3nyc_A          160 YLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCD-AG---SYRAA-VLVNAAGAWCDAIAGL  215 (381)
T ss_dssp             HHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECS-SE---EEEES-EEEECCGGGHHHHHHH
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeC-CC---EEEcC-EEEECCChhHHHHHHH
Confidence            334556679999999999999988  555 445432 33   68897 7999999999988764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.43  E-value=8.9e-13  Score=121.09  Aligned_cols=36  Identities=33%  Similarity=0.569  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||+|++|+++|++|+++ |++|+||||++.
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~-G~~V~vlE~~~~   38 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHTF   38 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence            469999999999999999999998 999999999864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.41  E-value=7.9e-13  Score=129.91  Aligned_cols=57  Identities=7%  Similarity=0.040  Sum_probs=42.2

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      |...+++.|++|+++++|++|..+  ++++ +|++. +|.  +++|+ .||+|+|.|++.|++.
T Consensus       423 L~~~a~~~Gv~i~~~t~V~~l~~~--~~~v-~V~t~-~G~--~i~Ad-~VVlAtG~~s~~l~~~  479 (676)
T 3ps9_A          423 VLELAQQQGLQIYYQYQLQNFSRK--DDCW-LLNFA-GDQ--QATHS-VVVLANGHQISRFSQT  479 (676)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEE--TTEE-EEEET-TSC--EEEES-EEEECCGGGGGCSTTT
T ss_pred             HHHHHHhCCCEEEeCCeeeEEEEe--CCeE-EEEEC-CCC--EEECC-EEEECCCcchhccccc
Confidence            334456679999999999999998  6653 45443 443  47886 7999999999887653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.38  E-value=1.8e-13  Score=137.49  Aligned_cols=56  Identities=18%  Similarity=0.150  Sum_probs=44.9

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      |...+++.|++|+++++|++|..+  ++++.+|++. +|   +++|+ .||+|+|.|++.|++
T Consensus       157 L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~-~G---~i~Ad-~VV~AaG~~s~~l~~  212 (830)
T 1pj5_A          157 LIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTA-DG---VIPAD-IVVSCAGFWGAKIGA  212 (830)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET-TE---EEECS-EEEECCGGGHHHHHH
T ss_pred             HHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEEC-Cc---EEECC-EEEECCccchHHHHH
Confidence            334556689999999999999988  7888888653 33   68897 899999999988764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.38  E-value=1.5e-12  Score=118.83  Aligned_cols=60  Identities=10%  Similarity=0.139  Sum_probs=49.8

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ...+|...+++.|++++.+++|+.+..+  ++++.+|....++...+++|+ .||.|.|.+|.
T Consensus       104 ~~~~L~~~a~~~G~~~~~~~~v~~~~~~--~~~~~~v~~~~~~~~~~~~a~-~vIgAdG~~S~  163 (397)
T 3oz2_A          104 FDKHLAALAAKAGADVWVKSPALGVIKE--NGKVAGAKIRHNNEIVDVRAK-MVIAADGFESE  163 (397)
T ss_dssp             HHHHHHHHHHHHTCEEESSCCEEEEEEE--TTEEEEEEEEETTEEEEEEEE-EEEECCCTTCH
T ss_pred             HHHHHHHHHHhcCcEEeeeeeeeeeeec--cceeeeeeecccccceEEEEe-EEEeCCccccH
Confidence            3345555566789999999999999999  899999988888888889995 88888898774

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.38  E-value=6.8e-13  Score=124.12  Aligned_cols=53  Identities=13%  Similarity=0.073  Sum_probs=40.7

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      .|...+++.|++|+++++|++|..+  ++++.+|++. +|+  .++|+ .||+|+|.++
T Consensus       139 ~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~-~G~--~i~Ad-~VVlAtGg~s  191 (447)
T 2i0z_A          139 ALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQ-TGE--VLETN-HVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET-TCC--EEECS-CEEECCCCSS
T ss_pred             HHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEEC-CCC--EEECC-EEEECCCCCc
Confidence            3434456689999999999999988  7888888765 453  58886 7888887555

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.38  E-value=7.7e-13  Score=120.68  Aligned_cols=57  Identities=9%  Similarity=-0.052  Sum_probs=42.7

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      .|.+.+++.|++++++++|++|..+  ++++ +|.+  ++.  .++|+ .||+|+|.+++.|++.
T Consensus       169 ~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~--~~g--~~~a~-~vV~A~G~~s~~l~~~  225 (382)
T 1ryi_A          169 AYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKT--PSG--DVWAN-HVVVASGVWSGMFFKQ  225 (382)
T ss_dssp             HHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEE--TTE--EEEEE-EEEECCGGGTHHHHHH
T ss_pred             HHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEc--CCc--eEEcC-EEEECCChhHHHHHHh
Confidence            3444456679999999999999887  6666 5644  332  57885 8999999999887654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.37  E-value=1.8e-12  Score=118.48  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|||||||+|++|+++|++|++. |++|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~-G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence            68999999999999999999998 999999999864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.36  E-value=2.6e-12  Score=112.93  Aligned_cols=37  Identities=30%  Similarity=0.472  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+|||||||+|++|+++|+.|++.+|.+|+|||+.+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            4689999999999999999999944899999999864

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.35  E-value=3.7e-12  Score=120.83  Aligned_cols=58  Identities=17%  Similarity=0.076  Sum_probs=47.7

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++.|++++++++|++|..+  + ++.+|.+.+  +|+...++|+ .||+|+|.|+..|+++
T Consensus       157 ~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~-~VV~AtG~~s~~l~~~  216 (501)
T 2qcu_A          157 QMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQAR-GLVNATGPWVKQFFDD  216 (501)
T ss_dssp             HHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEES-CEEECCGGGHHHHHHH
T ss_pred             HHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECC-EEEECCChhHHHHHHH
Confidence            4455679999999999999987  5 678898875  5766789996 8999999999988763

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.34  E-value=7.4e-13  Score=130.36  Aligned_cols=56  Identities=4%  Similarity=0.023  Sum_probs=40.9

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      ..+++.|++|+++++|++|..+  ++++ +|++. +|. ..+.|+ .||+|+|.|++.|++.
T Consensus       420 ~~a~~~Gv~i~~~t~V~~l~~~--~~~v-~V~t~-~G~-~~i~Ad-~VVlAtG~~s~~l~~~  475 (689)
T 3pvc_A          420 MLAQQNGMTCHYQHELQRLKRI--DSQW-QLTFG-QSQ-AAKHHA-TVILATGHRLPEWEQT  475 (689)
T ss_dssp             HHHHHTTCEEEESCCEEEEEEC--SSSE-EEEEC--CC-CCEEES-EEEECCGGGTTCSTTT
T ss_pred             HHHHhCCCEEEeCCeEeEEEEe--CCeE-EEEeC-CCc-EEEECC-EEEECCCcchhccccc
Confidence            4456679999999999999998  5553 45443 332 147786 8999999999887653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.33  E-value=1.6e-12  Score=120.51  Aligned_cols=38  Identities=21%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +.+|||||||||++|+++|+.|++. |.+|+|||+.+..
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~-G~~V~llEk~~~~   62 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKR-GRRVLVIDHARAP   62 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            4579999999999999999999998 9999999998753

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.33  E-value=6e-12  Score=114.32  Aligned_cols=36  Identities=31%  Similarity=0.528  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +|||||||+|++|+++|++|+++ |++|+|||++...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~-G~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT-TCCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence            58999999999999999999998 9999999998643

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.32  E-value=1e-12  Score=122.72  Aligned_cols=57  Identities=9%  Similarity=0.084  Sum_probs=44.6

Q ss_pred             hhcccCCCCcEEecCcEEEEEEE---------------cCCCCeEEEEEEEECCeEEEE--EcCeEEEEeccCCchhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILV---------------NPATKKAYGVQFIRHGIKQTV--LARREELEVISFRTTTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~---------------~~~~~~v~GV~~~~~g~~~~i--~A~k~VIlaaG~~s~~ll~  307 (310)
                      |.+.+++.|++|+++++|++|..               +  ++++.+|++. +|   ++  +|+ .||+|+|.|+++|++
T Consensus       187 L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~--~~~v~~V~t~-~g---~i~~~Ad-~VV~AtG~~s~~l~~  259 (448)
T 3axb_A          187 YYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ--EARASAAVLS-DG---TRVEVGE-KLVVAAGVWSNRLLN  259 (448)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS--CEEEEEEEET-TS---CEEEEEE-EEEECCGGGHHHHHG
T ss_pred             HHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC--CCceEEEEeC-CC---EEeecCC-EEEECCCcCHHHHHH
Confidence            43455668999999999999998               4  6677787653 44   46  785 899999999998876


Q ss_pred             h
Q psy17311        308 D  308 (310)
Q Consensus       308 ~  308 (310)
                      .
T Consensus       260 ~  260 (448)
T 3axb_A          260 P  260 (448)
T ss_dssp             G
T ss_pred             H
Confidence            5

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.29  E-value=1.5e-11  Score=110.18  Aligned_cols=37  Identities=35%  Similarity=0.550  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .+|||||||+|++|+++|++|+++ +|.+|+|||+.+.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            369999999999999999999995 5899999999863

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.29  E-value=2e-11  Score=114.94  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=37.8

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ..+++.|++++++++| +|+.+  ++++.||.+.+++.  .+.++ .||+|+|.++
T Consensus       127 ~~~~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g--~~~a~-~VVlAtGg~~  176 (472)
T 2e5v_A          127 KLAREEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGL--VEDVD-KLVLATGGYS  176 (472)
T ss_dssp             HHHHHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEE--ECCCS-EEEECCCCCG
T ss_pred             HHHHhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCC--eEEee-eEEECCCCCc
Confidence            3346689999999999 99988  78999998753222  46675 7888887544

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.26  E-value=1.3e-11  Score=119.24  Aligned_cols=60  Identities=12%  Similarity=0.057  Sum_probs=48.3

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ...+|...+++.|++++++++|++|..+  ++++.+|.+.++|...+++|+ .||.|.|.+|.
T Consensus       130 l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~Ad-lVV~AdG~~S~  189 (591)
T 3i3l_A          130 FDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESD-FVIDAGGSGGP  189 (591)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEES-EEEECCGGGCH
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcC-EEEECCCCcch
Confidence            3344555566689999999999999987  677889988777777789997 89999998774

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.25  E-value=2e-11  Score=116.03  Aligned_cols=59  Identities=24%  Similarity=0.350  Sum_probs=47.8

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCch
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ..+|...+++.|++|+++++|++|..+  ++++.||.+.. +|+..+++|+ .||.|.|.+|.
T Consensus       114 ~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad-~VI~AdG~~S~  173 (512)
T 3e1t_A          114 DDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHAR-FIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEE-EEEECCCTTCS
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcC-EEEECCCcchH
Confidence            344545556689999999999999998  88999999875 5665688995 89999998773

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.24  E-value=3.8e-11  Score=112.41  Aligned_cols=58  Identities=10%  Similarity=0.098  Sum_probs=46.8

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCch
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ..|...+++.|++|+++++|++|..+  +++++||.+.+  +|+..+++|+ .||.|.|.+|.
T Consensus       104 ~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad-~VV~AdG~~s~  163 (453)
T 3atr_A          104 QRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSK-VVVEATGYSRS  163 (453)
T ss_dssp             HHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECS-EEEECCGGGCT
T ss_pred             HHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcC-EEEECcCCchh
Confidence            34444455589999999999999988  78999999876  6766788997 89999997764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.21  E-value=1.4e-11  Score=113.54  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+|||||||+|++|+++|++|++. |.+|+|||+++.
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~-G~~V~vlEk~~~   38 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKK   38 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            369999999999999999999998 999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.21  E-value=6e-11  Score=113.15  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      |...+++.|++|+++++|++|..+  ++++.+|++. +|+  ++.|+ .||+|+|.++.
T Consensus       226 L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~-~G~--~i~Ad-~VVlA~G~~s~  278 (549)
T 3nlc_A          226 MRATIIELGGEIRFSTRVDDLHME--DGQITGVTLS-NGE--EIKSR-HVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEET-TSC--EEECS-CEEECCCTTCH
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEEC-CCC--EEECC-EEEECCCCChh
Confidence            434455679999999999999988  7889998875 443  57887 79999998775

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.21  E-value=3.9e-11  Score=110.82  Aligned_cols=56  Identities=16%  Similarity=0.164  Sum_probs=41.3

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEE-ECCeEEEEEcCeEEEEeccCCc
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFI-RHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~-~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ..|.+.+++.|++|+++++|++|..+  ++.+. |.+. .+|+..+++|+ .||.|+|.++
T Consensus       110 ~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~~~-v~v~~~~g~~~~~~a~-~vV~A~G~~s  166 (421)
T 3nix_A          110 KTLADEAARQGVDVEYEVGVTDIKFF--GTDSV-TTIEDINGNKREIEAR-FIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEEE--TTEEE-EEEEETTSCEEEEEEE-EEEECCGGGC
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEE-EEEEcCCCCEEEEEcC-EEEECCCCch
Confidence            34445555669999999999999987  44432 4444 36766789995 8999999887

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.19  E-value=1.5e-10  Score=103.05  Aligned_cols=37  Identities=22%  Similarity=0.396  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .+|||+|||+|++|+++|++|++. +|.+|+|+|+.+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            468999999999999999999985 3899999999864

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.19  E-value=1.2e-10  Score=111.13  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||||++|+++|+.|++. |.+|+||||.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~-G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ-GVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            469999999999999999999998 999999999864

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.15  E-value=2e-10  Score=107.51  Aligned_cols=43  Identities=26%  Similarity=0.375  Sum_probs=37.9

Q ss_pred             ccCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         51 QQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        51 ~~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..|+++|||||||+|.+|+++|++|++. |++|+||||++..++
T Consensus        15 ~~~~~~~dv~iiG~G~~g~~~a~~l~~~-g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           15 YFQGEHYDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGG   57 (475)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             ccccccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeccCCCCC
Confidence            4567789999999999999999999998 999999999987665

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.13  E-value=7.3e-11  Score=113.82  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||||++|+.+|+.|++. |.+|+|||++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC-CCCEEEEeecc
Confidence            579999999999999999999997 99999999874

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.10  E-value=1.2e-10  Score=107.77  Aligned_cols=56  Identities=23%  Similarity=0.191  Sum_probs=43.0

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC-chhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR-TTTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~-s~~ll~  307 (310)
                      |.+.+++.|++|+++++|++|..+  +++++||.+  +|+  ++.|+ .||+|++.+ +.+|+.
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~--~g~--~~~ad-~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILIE--NGKAAGIIA--DDR--IHDAD-LVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE--TTE--EEECS-EEEECSCHHHHHHHTT
T ss_pred             HHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE--CCE--EEECC-EEEECCCHHHHHHhcC
Confidence            334556679999999999999998  789999876  354  57886 789999854 455553

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.09  E-value=1.9e-10  Score=110.62  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+|||||||+|++|+++|+.|++. |.+|+||||.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~-G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG-GVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT-TCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCC
Confidence            469999999999999999999998 999999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.09  E-value=1.6e-10  Score=111.46  Aligned_cols=61  Identities=8%  Similarity=0.060  Sum_probs=45.5

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-----CCeE-------EEEEcCeEEEEeccCCch
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-----HGIK-------QTVLARREELEVISFRTT  303 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-----~g~~-------~~i~A~k~VIlaaG~~s~  303 (310)
                      ...+|...+++.|++|+++++|++|+.++ ++++.||.+.+     +|+.       .+++|+ .||+|.|.++.
T Consensus       146 l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~-~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad-~VV~AdG~~S~  218 (584)
T 2gmh_A          146 LVSWMGEQAEALGVEVYPGYAAAEILFHE-DGSVKGIATNDVGIQKDGAPKTTFERGLELHAK-VTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECT-TSSEEEEEECCEEECTTSCEEEEEECCCEEECS-EEEECCCTTCH
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CCCEEEEEeCCccccCCCCcccccCCceEEECC-EEEEeeCCCch
Confidence            33445555566799999999999999874 47899998763     4432       468886 89999997764

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.08  E-value=1.6e-10  Score=109.22  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~  301 (310)
                      |.+.+++.|++|+++++|++|+.+  +++++||++. +|+  ++.|+ .||+++..+
T Consensus       227 L~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~-~g~--~~~ad-~VV~~a~~~  277 (501)
T 4dgk_A          227 MIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLE-DGR--RFLTQ-AVASNADVV  277 (501)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET-TSC--EEECS-CEEECCC--
T ss_pred             HHHHHHHhCCceeeecceeEEEee--CCeEEEEEec-CCc--EEEcC-EEEECCCHH
Confidence            445567789999999999999999  8999999876 444  57887 788887743

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.08  E-value=2e-10  Score=110.50  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||||+||+.+|+.|++. |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~-G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM-GAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEecc
Confidence            469999999999999999999998 99999999974

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.07  E-value=9e-10  Score=104.34  Aligned_cols=59  Identities=14%  Similarity=-0.014  Sum_probs=43.4

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ...+|.+.+++.|++|+.+++|++|..+  ++.++ |++.++....+++|+ .||.|.|.+|.
T Consensus       108 l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~v~-v~~~~~~g~~~~~a~-~vVgADG~~S~  166 (500)
T 2qa1_A          108 TETHLEQWATGLGADIRRGHEVLSLTDD--GAGVT-VEVRGPEGKHTLRAA-YLVGCDGGRSS  166 (500)
T ss_dssp             HHHHHHHHHHHTTCEEEETCEEEEEEEE--TTEEE-EEEEETTEEEEEEES-EEEECCCTTCH
T ss_pred             HHHHHHHHHHHCCCEEECCcEEEEEEEc--CCeEE-EEEEcCCCCEEEEeC-EEEECCCcchH
Confidence            3444545555679999999999999988  55554 666654335678996 89999998875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.07  E-value=1.9e-10  Score=110.90  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..+|||||||||++|+.+|+.|++. |.+|+|||+..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~-G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARG-GLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEecc
Confidence            3579999999999999999999998 99999999874

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.06  E-value=7.2e-11  Score=108.19  Aligned_cols=54  Identities=13%  Similarity=0.017  Sum_probs=40.2

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      ..+.+.|++|+++++|++|..+  ++....|.+..+|+..+++++ .||.|.|.+|.
T Consensus       111 ~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~~g~~~~~~a~-~vV~AdG~~S~  164 (394)
T 1k0i_A          111 EAREACGATTVYQAAEVRLHDL--QGERPYVTFERDGERLRLDCD-YIAGCDGFHGI  164 (394)
T ss_dssp             HHHHHTTCEEESSCEEEEEECT--TSSSCEEEEEETTEEEEEECS-EEEECCCTTCS
T ss_pred             HHHHhcCCeEEeceeEEEEEEe--cCCceEEEEecCCcEEEEEeC-EEEECCCCCcH
Confidence            3344569999999999999876  322335776457876678996 89999998875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.05  E-value=1.1e-11  Score=114.33  Aligned_cols=38  Identities=37%  Similarity=0.570  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      .++||||||+|++|+++|++|++. +|++|+|||++...
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~   73 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLP   73 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            359999999999999999999994 38999999998643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.03  E-value=4.2e-10  Score=103.31  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++||||||+|++|+++|+.|++. |.+|+|||+.+.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~-G~~V~viE~~~~   40 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQARR   40 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence            58999999999999999999998 999999999853

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.00  E-value=4.2e-10  Score=103.59  Aligned_cols=38  Identities=26%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+.|||||||||++|+++|+.|++. |.+|+||||.+.
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~-G~~V~v~E~~~~   57 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQS-GIDCDVYEAVKE   57 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            34579999999999999999999998 999999999864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.99  E-value=1.6e-09  Score=102.59  Aligned_cols=37  Identities=30%  Similarity=0.487  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +.++||||||+|++|+++|+.|++. |.+|+||||.+.
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~-G~~v~vlE~~~~   46 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLG-GVDVMVLEQLPQ   46 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            3579999999999999999999998 999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.96  E-value=3.7e-09  Score=94.21  Aligned_cols=50  Identities=8%  Similarity=0.041  Sum_probs=41.6

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFR  301 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~  301 (310)
                      .++.|++++++++|++|..+  ++++.+|.+.+  +++..++.++ .||+|+|+.
T Consensus       219 ~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~  270 (338)
T 3itj_A          219 EKNEKIEILYNTVALEAKGD--GKLLNALRIKNTKKNEETDLPVS-GLFYAIGHT  270 (338)
T ss_dssp             HHCTTEEEECSEEEEEEEES--SSSEEEEEEEETTTTEEEEEECS-EEEECSCEE
T ss_pred             HhcCCeEEeecceeEEEEcc--cCcEEEEEEEECCCCceEEEEeC-EEEEEeCCC
Confidence            34569999999999999987  77899999987  5666788997 899999953

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.93  E-value=3.7e-09  Score=89.91  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +|||||||+|++|+.+|..|++. |.+|+|||+..
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~-g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            69999999999999999999998 99999999973

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.91  E-value=7.9e-10  Score=104.67  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ...+||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~-G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL-GARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC-CCeEEEEEeccc
Confidence            3468999999999999999999998 999999999863

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.91  E-value=2.9e-09  Score=95.49  Aligned_cols=35  Identities=31%  Similarity=0.493  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +|||||||+|++|+++|.+|++. |.+|+|||+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~-g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS-GLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS-SCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence            58999999999999999999998 999999999863

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.90  E-value=4.6e-09  Score=100.62  Aligned_cols=36  Identities=28%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||+|++|+++|+.|++. |.+|+||||.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~-G~~V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR-QVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            368999999999999999999997 999999999864

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.88  E-value=3.9e-09  Score=102.92  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPD   91 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~   91 (310)
                      ++.++||||||||++|+++|+.|++ . |.+|+||||.+.
T Consensus        29 ~~~~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~~   67 (639)
T 2dkh_A           29 VPSQVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKEG   67 (639)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3457999999999999999999999 8 999999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.87  E-value=7.2e-09  Score=93.06  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhc---cCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSE---VAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae---~~g~~VlllE~g~~   91 (310)
                      +||+|||||++|+++|+.|++   . |++|+|+||++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~-G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG-PLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C-CEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC-CceEEEEECCCC
Confidence            599999999999999999999   7 999999999864

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.81  E-value=2.8e-08  Score=91.14  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+||+|||||++|+++|+.|++. |.+|+|+||.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence            358999999999999999999997 999999999863

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.81  E-value=3.1e-09  Score=90.65  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ++||+|||||++|+++|+.|+++ |.+|+||||.+.+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~-G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCC
Confidence            48999999999999999999998 99999999987654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.80  E-value=7.4e-08  Score=85.05  Aligned_cols=60  Identities=17%  Similarity=0.255  Sum_probs=44.4

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCch-hhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTT-TLSR  307 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~-~ll~  307 (310)
                      ++....++.|++++++++|++|..+   +++.+|++.+  +|+...+.++ .||+|+|+... .++.
T Consensus       195 ~~~~~~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~  257 (323)
T 3f8d_A          195 YVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVN-GVFIEIGFDPPTDFAK  257 (323)
T ss_dssp             HHHHHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEECCHHHHH
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEecc---CceeEEEEEECCCCceEEEEcC-EEEEEECCCCChhHHh
Confidence            3444456679999999999999765   5678888876  4666678897 89999995443 4544

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.80  E-value=7.7e-09  Score=95.29  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCe-EEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~~   91 (310)
                      .++||||||||++|+++|+.|++. |.+ |+||||.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCC
Confidence            468999999999999999999998 999 999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.80  E-value=5.5e-09  Score=99.78  Aligned_cols=57  Identities=14%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchh
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTT  304 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~  304 (310)
                      ..+|...+++.|++++.+ +|++|..++ ++.+.+|.+. +|+  +++|+ .||.|.|.+|..
T Consensus       168 ~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~g~~~~v~~~-~g~--~i~ad-~vV~A~G~~s~~  224 (538)
T 2aqj_A          168 ADFLKRWAVERGVNRVVD-EVVDVRLNN-RGYISNLLTK-EGR--TLEAD-LFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEET-TSC--EECCS-EEEECCGGGCCC
T ss_pred             HHHHHHHHHHCCCEEEEe-eEeEEEEcC-CCcEEEEEEC-CCc--EEEeC-EEEECCCCchhh
Confidence            344545555679999999 899998863 5667777654 453  57886 899999988754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.77  E-value=2.2e-08  Score=95.36  Aligned_cols=57  Identities=9%  Similarity=0.037  Sum_probs=41.1

Q ss_pred             hhhhhcccCC-CCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchh
Q psy17311        242 KAFLRPVRKR-KNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTT  304 (310)
Q Consensus       242 ~~~l~~~~~~-~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~  304 (310)
                      ..+|...+++ .|++++.+ +|++|..++ ++.+.+|.+. +|.  +++|+ .||.|.|.+|..
T Consensus       178 ~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~-~g~~~~v~~~-~g~--~i~ad-~vV~AdG~~S~~  235 (526)
T 2pyx_A          178 SQLLTEHCTQKLGVTHIRD-HVSQIINNQ-HGDIEKLITK-QNG--EISGQ-LFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHHTSCCEEEEC-CEEEEEECT-TSCEEEEEES-SSC--EEECS-EEEECSGGGCCC
T ss_pred             HHHHHHHHHhcCCCEEEEe-EEEEEEecC-CCcEEEEEEC-CCC--EEEcC-EEEECCCcchHH
Confidence            3445455555 79999999 599998863 4566777664 443  38886 899999988754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.77  E-value=5.6e-09  Score=95.15  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||||||+|++|+++|+.|++. |.+|+|||+.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~-G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQN-GWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence            58999999999999999999998 999999999864

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.76  E-value=2.7e-08  Score=91.27  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||||++|+++|+.|++. |.+|+||||.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQN-GIDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            469999999999999999999998 999999999863

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.76  E-value=2.9e-09  Score=101.98  Aligned_cols=57  Identities=18%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             hhhhhcccCCC-CcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchh
Q psy17311        242 KAFLRPVRKRK-NLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTT  304 (310)
Q Consensus       242 ~~~l~~~~~~~-g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~  304 (310)
                      ..+|...+++. |++++++ +|++|..++ ++++.+|++. +|+  ++.|+ .||.|.|.+|..
T Consensus       197 ~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~-~g~~~~v~~~-~G~--~i~ad-~vI~A~G~~S~~  254 (550)
T 2e4g_A          197 ADFLRRFATEKLGVRHVED-RVEHVQRDA-NGNIESVRTA-TGR--VFDAD-LFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHHSCCEEEEC-CEEEEEECT-TSCEEEEEET-TSC--EEECS-EEEECCGGGCCC
T ss_pred             HHHHHHHHHhcCCcEEEEC-eEeEEEEcC-CCCEEEEEEC-CCC--EEECC-EEEECCCCchhh
Confidence            34454555555 9999999 999998863 5677788764 453  57887 899999988754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.73  E-value=1.1e-07  Score=83.71  Aligned_cols=53  Identities=13%  Similarity=0.227  Sum_probs=42.8

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISF  300 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~  300 (310)
                      +....++.|++++++++|++|..+  ++++.+|.+.. +|+..++.++ .||+|.|+
T Consensus       189 ~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~~v~~~~~~g~~~~~~~D-~vv~a~G~  242 (315)
T 3r9u_A          189 VEKVKKNEKIELITSASVDEVYGD--KMGVAGVKVKLKDGSIRDLNVP-GIFTFVGL  242 (315)
T ss_dssp             HHHHHHCTTEEEECSCEEEEEEEE--TTEEEEEEEECTTSCEEEECCS-CEEECSCE
T ss_pred             HHHHHhcCCeEEEeCcEEEEEEcC--CCcEEEEEEEcCCCCeEEeecC-eEEEEEcC
Confidence            334446789999999999999887  77899998873 5666678887 89999984

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.73  E-value=2.8e-08  Score=92.96  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCC-----CeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAH-----WSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g-----~~VlllE~g~~   91 (310)
                      ..|||||||+|++|+++|.+|++. |     .+|+|||+.+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCC
Confidence            468999999999999999999998 8     89999999874

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.72  E-value=1.2e-08  Score=96.79  Aligned_cols=57  Identities=11%  Similarity=0.075  Sum_probs=42.3

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchh
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTT  304 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~  304 (310)
                      ...|...+++.|++++.+ +|++|..++ ++++.+|++. +|+  +++|+ .||.|.|.+|..
T Consensus       176 ~~~L~~~a~~~gv~~~~~-~v~~i~~~~-~~~~~~v~~~-~g~--~~~ad-~vV~A~G~~S~~  232 (511)
T 2weu_A          176 ARYLSEYAIARGVRHVVD-DVQHVGQDE-RGWISGVHTK-QHG--EISGD-LFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHHHHTTCEEEEC-CEEEEEECT-TSCEEEEEES-SSC--EEECS-EEEECCGGGCCC
T ss_pred             HHHHHHHHHHCCCEEEEC-eEeEEEEcC-CCCEEEEEEC-CCC--EEEcC-EEEECCCcchHH
Confidence            334445555689999999 999998853 5677788764 453  57886 899999988754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.71  E-value=1.4e-07  Score=87.83  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~~~   92 (310)
                      ..+||+|||||++|+++|..|++. |.  +|+|+|+.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~-G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE-KAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc-CCCCCeEEEecCCCC
Confidence            468999999999999999999997 99  99999998644

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.71  E-value=5.1e-08  Score=89.98  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=42.5

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      .++.+..++.|++++++++|++|..+  ++++.+|++. +|+  ++.++ .||+|+|+..
T Consensus       198 ~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~-dG~--~i~aD-~Vv~a~G~~p  251 (415)
T 3lxd_A          198 EFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQ-DGS--VIPAD-IVIVGIGIVP  251 (415)
T ss_dssp             HHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEES-SSC--EEECS-EEEECSCCEE
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeC-CCC--EEEcC-EEEECCCCcc
Confidence            34545567789999999999999887  7889899875 443  57887 8999999644

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.68  E-value=1.9e-07  Score=82.26  Aligned_cols=56  Identities=5%  Similarity=0.112  Sum_probs=43.2

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      .++.|++++++++|++|..+  ++++.+|.+.+  +|+..++.++ .||+|.|+.. ..++.
T Consensus       189 ~~~~gv~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  247 (311)
T 2q0l_A          189 KNNDKIEFLTPYVVEEIKGD--ASGVSSLSIKNTATNEKRELVVP-GFFIFVGYDVNNAVLK  247 (311)
T ss_dssp             HTCTTEEEETTEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECSCEEECCGGGB
T ss_pred             hhCCCeEEEeCCEEEEEECC--CCcEeEEEEEecCCCceEEEecC-EEEEEecCccChhhhh
Confidence            34579999999999999877  67788898875  6766678897 8999999532 24443

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.64  E-value=1.7e-08  Score=89.09  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++|||||||||+||++||++|++. |++|+|+|++..
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~-g~~v~lie~~~~   40 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRA-RKQIALFDNNTN   40 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSCC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            479999999999999999999997 999999999753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.61  E-value=2e-08  Score=88.64  Aligned_cols=49  Identities=10%  Similarity=0.117  Sum_probs=39.2

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      .....+.+.+..+.+.++...  +....++++.+  .+....+.++ .||++.|
T Consensus       197 ~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~d-~vi~a~G  247 (314)
T 4a5l_A          197 VLNHPKIEVIWNSELVELEGD--GDLLNGAKIHNLVSGEYKVVPVA-GLFYAIG  247 (314)
T ss_dssp             HHTCTTEEEECSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             hhcccceeeEeeeeeEEEEee--eeccceeEEeecccccceeeccc-cceEecc
Confidence            345678999999999999887  77788888875  4556688897 8888888

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.60  E-value=2.6e-08  Score=88.15  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +|||||||||+||+++|.+|++. |++|+|+|++.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~-g~~V~liE~~~   39 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRA-NLKTVMIERGI   39 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence            69999999999999999999998 99999999974

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.60  E-value=2.2e-08  Score=94.67  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||||||||++||+||++|+++.|++|+|||+.+..++
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            3699999999999999999999855999999999987765

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.59  E-value=1.4e-07  Score=90.15  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +.++||||||||++|+++|.+|++. |.+|+|||+++.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~   50 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD   50 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3479999999999999999999998 999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.59  E-value=1.7e-07  Score=86.22  Aligned_cols=59  Identities=10%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch-hhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT-TLSR  307 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~-~ll~  307 (310)
                      ..+.+..++.|++++++++|++|..+  ++++.+|++. +|+  ++.++ .||+|+|+... .+++
T Consensus       188 ~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~-dG~--~i~aD-~Vv~a~G~~p~~~l~~  247 (404)
T 3fg2_P          188 SYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLS-DGN--TLPCD-LVVVGVGVIPNVEIAA  247 (404)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET-TSC--EEECS-EEEECCCEEECCHHHH
T ss_pred             HHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeC-CCC--EEEcC-EEEECcCCccCHHHHH
Confidence            34445567789999999999999987  7889898875 453  57887 89999996433 3544

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.58  E-value=3.7e-08  Score=87.88  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~~~   93 (310)
                      .++||+|||||+||++||++|++ +.|++|+|+||++.+.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~G  103 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCC
Confidence            46899999999999999999985 3499999999987554

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.58  E-value=3.9e-08  Score=91.90  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=38.5

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV   95 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~   95 (310)
                      .++.+|||||||+|++|+++|.+|+++ |++|+||||.+..++.
T Consensus         7 ~~~~~~dvvVIGaG~~GL~aA~~La~~-G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G            7 TIDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             hccccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCcc
Confidence            345679999999999999999999998 9999999999887753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.58  E-value=1.2e-07  Score=84.15  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||||||+|++|+++|.+|++. |.+|+|+|+.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~   41 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR-QASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence            58999999999999999999997 999999999863

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.58  E-value=1.1e-07  Score=85.74  Aligned_cols=34  Identities=29%  Similarity=0.526  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      +|||||||+|++|+++|.+|++. |. +|+|||+.+
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~-g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDF-GITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence            68999999999999999999997 98 999999985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.57  E-value=2.4e-07  Score=86.86  Aligned_cols=35  Identities=14%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhc---cCCCe---EEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSE---VAHWS---ILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae---~~g~~---VlllE~g~~~   92 (310)
                      +||+|||||++|+++|..|++   . |.+   |+|+|+.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G~~~~~V~v~E~~~~~   43 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK-GAEIPELVCFEKQADW   43 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT-TCCCCEEEEECSSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc-CCCCCcEEEEEcCCCC
Confidence            699999999999999999999   7 899   9999998643

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.57  E-value=1.4e-07  Score=90.24  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..++||||||||++|+.+|.+|++. |.+|+|||+.+.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~-G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            3469999999999999999999996 999999999863

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.55  E-value=1.8e-07  Score=89.41  Aligned_cols=36  Identities=33%  Similarity=0.477  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||||++|+.+|.+|++. |.+|+|||+++.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~v~iiE~~~~   43 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQA-GMKVLGIEAGED   43 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEeCCCC
Confidence            469999999999999999999996 999999999863

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.54  E-value=6.3e-08  Score=87.52  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ..++||||||+|++|+++|++|++. |++|+||||....
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~-G~~V~vle~~~~~   41 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPE   41 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCEEEEEeccCCC
Confidence            4579999999999999999999997 9999999998643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.53  E-value=3.3e-08  Score=94.38  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHh-ccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLS-EVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~La-e~~g~~VlllE~g~~   91 (310)
                      .++||||||||++|+++|.+|+ +. |.+|+|||+.+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~-G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEECCCC
Confidence            3689999999999999999999 75 999999999863

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.47  E-value=2.7e-07  Score=90.30  Aligned_cols=35  Identities=26%  Similarity=0.481  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhc-----cCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSE-----VAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae-----~~g~~VlllE~g~~   91 (310)
                      ++||+|||||++|+++|+.|++     . |.+|+||||.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCCC
Confidence            6899999999999999999999     7 999999999753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.42  E-value=1.3e-07  Score=87.38  Aligned_cols=36  Identities=42%  Similarity=0.637  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      |||||||||++|+++|++|++. |++|+|||+.+...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G~~V~vlE~~~~~G   37 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLG   37 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcc
Confidence            7999999999999999999998 99999999976543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.42  E-value=2e-06  Score=81.28  Aligned_cols=58  Identities=12%  Similarity=0.131  Sum_probs=41.7

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCC-----eEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATK-----KAYGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~-----~v~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      ...||..++++.+..|.++++|+++..+..++     ...-|++.+  +|+..++.|+ .||+|+|
T Consensus       147 ~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar-~vVlatG  211 (501)
T 4b63_A          147 FEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTR-KVVIAIG  211 (501)
T ss_dssp             HHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEE-EEEECCC
T ss_pred             HHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeC-EEEECcC
Confidence            45688777888888899999999998764222     123455554  4667788886 7888888

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.40  E-value=2e-07  Score=85.63  Aligned_cols=42  Identities=26%  Similarity=0.497  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |..++||||||||++|+++|++|++++|.+|+|||+.+..++
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            445799999999999999999999965899999999876654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.34  E-value=2.7e-07  Score=86.87  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=32.5

Q ss_pred             ccCC-CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         51 QQLH-REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        51 ~~~~-~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..|. .+|||||||||++|+++|++|++. |++|+|||+..
T Consensus        20 ~~M~~~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~   59 (484)
T 3o0h_A           20 GSMGSFDFDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEYR   59 (484)
T ss_dssp             ----CCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CCCCcCCCCEEEECcCHHHHHHHHHHHhC-cCEEEEEeCCC
Confidence            3444 369999999999999999999998 99999999943

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.32  E-value=3.8e-07  Score=84.07  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=33.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ||||||||++|+++|++|+++ |++|+||||.+...+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~-G~~V~vlE~~~~~GG   37 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMIGG   37 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSSSCT
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCCCc
Confidence            899999999999999999998 999999999876543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.31  E-value=3.9e-07  Score=86.51  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||||||||++|+++|++|++. |++|+|||+.+..++
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GG   41 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGG   41 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSSSBT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCC
Confidence            468999999999999999999998 999999999876543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.30  E-value=3.8e-07  Score=81.98  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCC------CeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH------WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g------~~VlllE~g~   90 (310)
                      ||||||||++|+++|++|+++ |      .+|+|||+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence            999999999999999999998 6      9999999986

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.28  E-value=6.1e-07  Score=84.38  Aligned_cols=40  Identities=28%  Similarity=0.454  Sum_probs=36.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +..+||+|||||++|+++|++|++. |.+|+|||+.+..++
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~-g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeccCCCCC
Confidence            4568999999999999999999997 999999999877654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.28  E-value=6.7e-07  Score=83.01  Aligned_cols=41  Identities=24%  Similarity=0.429  Sum_probs=37.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |+.+||+||||+|++|+++|.+|++. |++|+|+|+.+..++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGG   43 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCccc
Confidence            55679999999999999999999997 999999999877665

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.27  E-value=5.6e-07  Score=81.71  Aligned_cols=38  Identities=32%  Similarity=0.582  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +||++|||+|++|+++|++|+++ |.+|+|+|+++..++
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGG   38 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSG
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCc
Confidence            37999999999999999999998 999999999876544

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.27  E-value=4.6e-07  Score=85.07  Aligned_cols=35  Identities=31%  Similarity=0.514  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||||++|+++|++|++. |++|+|+|+++
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            469999999999999999999998 99999999986

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.27  E-value=6.3e-07  Score=82.07  Aligned_cols=40  Identities=28%  Similarity=0.640  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...+||+|||||++|+++|++|++. |.+|+|||+.+..++
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPHIGG   66 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSSG
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHC-CCceEEEeccCCCCC
Confidence            3579999999999999999999998 999999999876543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.26  E-value=7.4e-07  Score=82.12  Aligned_cols=39  Identities=21%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~~~~   94 (310)
                      ..+||||||||++|+++|++|++. | .+|+|+|+.+..++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~-g~~~v~v~E~~~~~GG   44 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA-GFHDYTILERTDHVGG   44 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSSCSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEECCCCCCC
Confidence            468999999999999999999998 9 89999999876553

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.25  E-value=5.7e-07  Score=79.56  Aligned_cols=57  Identities=25%  Similarity=0.372  Sum_probs=43.7

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCC-chhhhhh
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFR-TTTLSRD  308 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~-s~~ll~~  308 (310)
                      +++.|++++++++|++|..+  ++++.+|.+.+  +|+...+.++ .||+|+|+. ++.++.+
T Consensus       200 l~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~  259 (319)
T 3cty_A          200 IKKRNIPYIMNAQVTEIVGD--GKKVTGVKYKDRTTGEEKLIETD-GVFIYVGLIPQTSFLKD  259 (319)
T ss_dssp             HHHTTCCEECSEEEEEEEES--SSSEEEEEEEETTTCCEEEECCS-EEEECCCEEECCGGGTT
T ss_pred             HhcCCcEEEcCCeEEEEecC--CceEEEEEEEEcCCCceEEEecC-EEEEeeCCccChHHHhh
Confidence            34679999999999999877  67788999875  6766678887 889998853 3345443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.25  E-value=1e-06  Score=81.07  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCch-hhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTT-TLSR  307 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~-~ll~  307 (310)
                      ..+.+..++.|+++++++.|++|..+  + ++.+|++. +|+  ++.++ .||+|.|+... .+++
T Consensus       189 ~~l~~~l~~~GV~i~~~~~v~~i~~~--~-~~~~v~~~-dg~--~i~aD-~Vv~a~G~~p~~~l~~  247 (410)
T 3ef6_A          189 AWLRGLLTELGVQVELGTGVVGFSGE--G-QLEQVMAS-DGR--SFVAD-SALICVGAEPADQLAR  247 (410)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEECS--S-SCCEEEET-TSC--EEECS-EEEECSCEEECCHHHH
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEecc--C-cEEEEEEC-CCC--EEEcC-EEEEeeCCeecHHHHH
Confidence            34445556789999999999999765  3 66677765 453  57787 89999995443 3444

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.24  E-value=6.6e-07  Score=83.79  Aligned_cols=39  Identities=28%  Similarity=0.395  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||||||||++|+++|++|++. |.+|+|||+.+..++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~-g~~v~v~E~~~~~GG   53 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSR-GTDAVLLESSARLGG   53 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTT-TCCEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCCCc
Confidence            468999999999999999999998 999999999876543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.24  E-value=4.8e-07  Score=84.28  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC------CeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH------WSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g------~~VlllE~g~~~~   93 (310)
                      .+||||||||++|+++|++|+++ |      .+|+|||+.+..+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCCC
Confidence            58999999999999999999998 8      9999999986554

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.23  E-value=6.3e-07  Score=83.92  Aligned_cols=38  Identities=32%  Similarity=0.556  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .+|||||||+|++|+++|.+|++. |++|+||||.+..+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~-G~~V~liEk~~~~G   40 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA-KYNVLMADPKGELG   40 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECTTSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCC
Confidence            469999999999999999999998 99999999766543

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.23  E-value=7.7e-07  Score=83.24  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~~~~~   94 (310)
                      +||||||||++|+++|++|+++ |.  +|+|||+.+..++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G~~~~V~vlEa~~~~GG   41 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-PCPPKVVLVESSERLGG   41 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-SSCCEEEEECSSSSSBT
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCCCcEEEEeCCCCCCC
Confidence            6999999999999999999998 99  9999999765543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.22  E-value=5.3e-06  Score=78.25  Aligned_cols=35  Identities=31%  Similarity=0.402  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+||||||+|++|+++|.+|++.  ++|+|||+++.
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~--~~V~vie~~~~  141 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY--LTVALIEERGW  141 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT--CCEEEECTTSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc--CCEEEEeCCCC
Confidence            358999999999999999999996  89999999863

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.21  E-value=8.4e-07  Score=83.53  Aligned_cols=38  Identities=37%  Similarity=0.545  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ++||||||+|++|+++|++|+++ |.+|+|||+.+..++
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG   76 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEARDRIGG   76 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHT-TCCEEEECSSSBSBT
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCCEEEEeCCCCCCC
Confidence            38999999999999999999998 999999999876543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.21  E-value=6.7e-07  Score=84.83  Aligned_cols=38  Identities=34%  Similarity=0.382  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~~~~   94 (310)
                      .+||||||||++|++||++|+++ | .+|+|||+.+..++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~-G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQN-GIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHT-TCCSEEEECSSSSSBT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCCCCC
Confidence            58999999999999999999998 8 99999999876654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.21  E-value=1e-06  Score=83.12  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |...+||||||||++|+++|++|++. |++|+|+|+.+..++
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG   50 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGG   50 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCS
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence            44568999999999999999999998 999999999877654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.19  E-value=1e-06  Score=83.01  Aligned_cols=38  Identities=29%  Similarity=0.498  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .+|||||||||++|+++|.+|++. |++|+|+|+.+..+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~-G~~V~liEk~~~~G   61 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQL-GMKVAVVEKRSTYG   61 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            469999999999999999999998 99999999876543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.19  E-value=1e-06  Score=81.95  Aligned_cols=38  Identities=24%  Similarity=0.419  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ++||||||+|++|+++|++|++. |++|+|||+.+..++
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~GG   42 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGG   42 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCC
Confidence            68999999999999999999998 999999999876543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.19  E-value=1.1e-06  Score=79.10  Aligned_cols=61  Identities=20%  Similarity=0.203  Sum_probs=45.7

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCch-hhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTT-TLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~-~ll~~  308 (310)
                      +.+..++.|++++++++|++|..+  ++++.+|.+.. +|+...+.++ .||+|.|+... .++++
T Consensus       208 l~~~~~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~  270 (360)
T 3ab1_A          208 VERARANGTIDVYLETEVASIEES--NGVLTRVHLRSSDGSKWTVEAD-RLLILIGFKSNLGPLAR  270 (360)
T ss_dssp             SHHHHHHTSEEEESSEEEEEEEEE--TTEEEEEEEEETTCCEEEEECS-EEEECCCBCCSCGGGGG
T ss_pred             HHHHhhcCceEEEcCcCHHHhccC--CCceEEEEEEecCCCeEEEeCC-EEEECCCCCCCHHHHHh
Confidence            334445679999999999999887  78888998863 5655678887 89999995443 35543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.17  E-value=1e-06  Score=82.37  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +|||||||+|++|+++|++|++. |++|+|||+.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~-G~~V~liEk~   37 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEF   37 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            69999999999999999999998 9999999994

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.17  E-value=1.5e-06  Score=78.91  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC-CCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG-PDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g-~~~~   93 (310)
                      ..+||+|||||++|+++|++|++. |.+|+|+|+. +..+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~-G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRA-GHDVTILEANANRVG   81 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHT-SCEEEEECSCSSCCB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCcEEEEeccccccC
Confidence            468999999999999999999998 9999999998 5443

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.16  E-value=1.1e-06  Score=83.71  Aligned_cols=34  Identities=32%  Similarity=0.606  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+||||+|++|.++|.++++. |+||+|||+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~-G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAH-GARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence            59999999999999999999998 99999999765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.15  E-value=1.2e-06  Score=77.72  Aligned_cols=57  Identities=12%  Similarity=0.122  Sum_probs=42.7

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      ...++.|++++++++|++|..+   +++.+|++.+  +|+..++.++ .||+|+|+.. ..++.
T Consensus       196 ~l~~~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  255 (325)
T 2q7v_A          196 RAFANPKMKFIWDTAVEEIQGA---DSVSGVKLRNLKTGEVSELATD-GVFIFIGHVPNTAFVK  255 (325)
T ss_dssp             HHHTCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             HHHhcCCceEecCCceEEEccC---CcEEEEEEEECCCCcEEEEEcC-EEEEccCCCCChHHHh
Confidence            3345579999999999999754   5678898875  6766678897 8999999533 34544

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.15  E-value=1.5e-06  Score=77.32  Aligned_cols=61  Identities=7%  Similarity=0.011  Sum_probs=44.1

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCch-hhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRTT-TLSRD  308 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s~-~ll~~  308 (310)
                      .+.+..++.|++++++++|++|..+   +++.+|.+..  +|+..++.++ .||+|+|+... .++.+
T Consensus       196 ~l~~~l~~~gv~v~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~  259 (335)
T 2zbw_A          196 ELMKAHEEGRLEVLTPYELRRVEGD---ERVRWAVVFHNQTQEELALEVD-AVLILAGYITKLGPLAN  259 (335)
T ss_dssp             HHHHHHHTTSSEEETTEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEEEECGGGGG
T ss_pred             HHHhccccCCeEEecCCcceeEccC---CCeeEEEEEECCCCceEEEecC-EEEEeecCCCCchHhhh
Confidence            3444556779999999999999764   5577888874  5655678887 89999995432 35443

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.15  E-value=1.5e-06  Score=81.69  Aligned_cols=34  Identities=38%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+|||||||+|++|+++|.+|++. |++|+||||+
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~-G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLN-GARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            479999999999999999999998 9999999964

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.14  E-value=1.1e-06  Score=82.48  Aligned_cols=36  Identities=36%  Similarity=0.590  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..+|||||||+|++|+++|.+|++. |++|+|+|+..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~-G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence            3479999999999999999999998 99999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.14  E-value=1.5e-06  Score=82.59  Aligned_cols=36  Identities=31%  Similarity=0.574  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..+|||||||+|++|+++|.+|++. |.+|+|+|+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~-G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQY-GKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccC
Confidence            3579999999999999999999998 99999999964

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.13  E-value=1.6e-06  Score=75.53  Aligned_cols=35  Identities=40%  Similarity=0.669  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|||+|||+|++|+++|.+|++. |.+|+|+|+++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA-RKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCc
Confidence            48999999999999999999998 999999998653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.12  E-value=2.1e-05  Score=72.74  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEeccCCchhhhh
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVISFRTTTLSR  307 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG~~s~~ll~  307 (310)
                      ..++....++.|+++++++.|+++.    .++   +.+.+ +|...++.++ .||+++|...+.++.
T Consensus       203 ~~~l~~~l~~~GV~~~~~~~v~~v~----~~~---~~~~~~~g~~~~i~~d-~vi~~~G~~~~~~~~  261 (430)
T 3hyw_A          203 KRLVEDLFAERNIDWIANVAVKAIE----PDK---VIYEDLNGNTHEVPAK-FTMFMPSFQGPEVVA  261 (430)
T ss_dssp             HHHHHHHHHHTTCEEECSCEEEEEC----SSE---EEEECTTSCEEEEECS-EEEEECEEECCHHHH
T ss_pred             HHHHHHHHHhCCeEEEeCceEEEEe----CCc---eEEEeeCCCceEeecc-eEEEeccCCCchHHH
Confidence            3455566677899999999999983    232   44443 5666788997 888898866555543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.12  E-value=1.4e-06  Score=81.93  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      |+.+|||||||+|++|+++|.+|++. |++|+|||+.+..
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~-G~~V~liE~~~~~   41 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL   41 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence            44579999999999999999999997 9999999996543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.12  E-value=2e-06  Score=81.80  Aligned_cols=38  Identities=37%  Similarity=0.489  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++.+|||||||||++|+++|.+|++. |++|+|||+++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~   77 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPF   77 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            44679999999999999999999998 999999999874

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.12  E-value=1.4e-06  Score=80.83  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||||||||++|+++|+.|++. |.+|+|||+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~-G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQH-DVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHT-TCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence            48999999999999999999998 99999999976

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.12  E-value=1.6e-06  Score=81.86  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~-G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH-TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-CSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence            59999999999999999999998 99999999975

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.12  E-value=1.6e-06  Score=80.89  Aligned_cols=35  Identities=37%  Similarity=0.598  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC-CCeEEEEcCCC
Confidence            469999999999999999999997 99999999974

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.11  E-value=1.7e-06  Score=80.92  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~~   93 (310)
                      .+||||||||++|+++|++|++. |  .+|+|||+.+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~~G   42 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGERLG   42 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSSSB
T ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCCCC
Confidence            58999999999999999999998 8  9999999976543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.11  E-value=1.7e-06  Score=81.00  Aligned_cols=35  Identities=34%  Similarity=0.629  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence            469999999999999999999997 99999999974

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.11  E-value=1.6e-06  Score=81.75  Aligned_cols=34  Identities=26%  Similarity=0.520  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+|||||||+|++|+++|.+|++. |.+|+||||.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~-G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQL-GKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEEec
Confidence            469999999999999999999998 9999999984

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.10  E-value=1.4e-06  Score=81.71  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ..+|||||||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~-G~~V~liE~~~~~   40 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCc
Confidence            3469999999999999999999998 9999999996543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.10  E-value=2.2e-06  Score=69.35  Aligned_cols=33  Identities=36%  Similarity=0.684  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ||++|||+|++|+.+|..|++. |.+|+|+|+.+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~-g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA-GLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            7999999999999999999998 99999999986

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.09  E-value=2.2e-06  Score=80.26  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..+|||||||+|++|+++|.+|++. |++|+|||++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~   37 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERGT   37 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence            3469999999999999999999997 99999999983

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=1.9e-06  Score=80.93  Aligned_cols=35  Identities=43%  Similarity=0.711  Sum_probs=32.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|||||||||++|+++|.+|++. |.+|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~-g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-SCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            479999999999999999999997 99999999974

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.05  E-value=2.6e-06  Score=79.69  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +|||||||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL-GMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence            58999999999999999999998 9999999998644

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.04  E-value=2.1e-06  Score=76.51  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +...+||+|||+|++|+++|.+|++. |++|+|+|+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~-g~~v~lie~~   46 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARA-QLAPLVFEGT   46 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHT-TCCCEEECCS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence            34579999999999999999999997 9999999975

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.03  E-value=3.5e-06  Score=78.81  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .+|||||||+|++|+++|.+|++. |++|+|+|+.+...
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~-g~~V~liE~~~~~G   42 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALG   42 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcc
Confidence            469999999999999999999998 99999999986443

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.03  E-value=2e-06  Score=75.87  Aligned_cols=54  Identities=9%  Similarity=0.071  Sum_probs=42.2

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--C-CeEEEEEcCeEEEEeccCC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--H-GIKQTVLARREELEVISFR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~-g~~~~i~A~k~VIlaaG~~  301 (310)
                      +.+.+++.|++++++++|++|..+  ++++.+|++.+  + |+..++.++ .||+|+|+.
T Consensus       190 l~~~l~~~gv~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~g~~~~i~~D-~vv~a~G~~  246 (320)
T 1trb_A          190 LMDKVENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHS  246 (320)
T ss_dssp             HHHHHHTSSEEEECSCEEEEEEEC--SSSEEEEEEECCTTCCCCEEEECS-EEEECSCEE
T ss_pred             HHHhcccCCeEEEcCceeEEEEcC--CCceEEEEEEeccCCCceEEEEcC-EEEEEeCCC
Confidence            334456789999999999999877  66899999875  2 555678897 899999953

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.02  E-value=3.7e-06  Score=79.17  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||||||||++|+++|+.|++. |.+|+|||+.+...+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG   70 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECCCCCCC
Confidence            468999999999999999999998 999999999875543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.02  E-value=4.2e-06  Score=76.37  Aligned_cols=38  Identities=18%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ++|++|||+|++|+++|++|++. |.+|+|+|+.+...+
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~-g~~v~v~E~~~~~GG   40 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGG   40 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEEecCCcCC
Confidence            48999999999999999999998 999999999876553

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.01  E-value=2.6e-06  Score=80.37  Aligned_cols=35  Identities=20%  Similarity=0.449  Sum_probs=32.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEA   88 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~   88 (310)
                      |..+|||||||||++|+++|.+|++ . |++|+|+|+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE~   39 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVDV   39 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEES
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhc-CCeEEEEec
Confidence            4457999999999999999999999 8 999999993

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.01  E-value=3.3e-06  Score=78.75  Aligned_cols=36  Identities=31%  Similarity=0.488  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +|||||||+|++|+++|.+|++. |++|+|+|+.+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL-GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence            48999999999999999999998 9999999998643

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.01  E-value=4.1e-06  Score=78.79  Aligned_cols=39  Identities=26%  Similarity=0.338  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~~~~   94 (310)
                      ..+||+|||||++|+++|++|++. | .+|+|+|+.+..++
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSSSG
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCCCC
Confidence            368999999999999999999998 7 79999999876543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.01  E-value=3.7e-06  Score=79.40  Aligned_cols=34  Identities=41%  Similarity=0.646  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +|||||||+|++|+++|.+|++. |++|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            48999999999999999999997 99999999985

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.00  E-value=5e-06  Score=81.65  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=36.1

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      +.+..+||||||+|++|+++|++|++. |++|+|+|+.+...
T Consensus       387 ~~~~~~~VvIIGgG~AGl~aA~~La~~-G~~V~liE~~~~~G  427 (690)
T 3k30_A          387 AKESDARVLVVGAGPSGLEAARALGVR-GYDVVLAEAGRDLG  427 (690)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSC
T ss_pred             cccccceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence            344579999999999999999999998 99999999987544

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.00  E-value=4.3e-06  Score=76.17  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=31.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .|+|||||++|+++|+.|++. |.+|+|+||.+.+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~-G~~v~v~Er~~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKH-GIKVTIYERNSAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEecCCCC
Confidence            699999999999999999998 9999999997643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.00  E-value=4.2e-06  Score=75.80  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||||||+|.+|+.+|+.|++. |.+|+|+|+.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~-G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL-GVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHC-CCcEEEEeccC
Confidence            6999999999999999999998 99999999876

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.00  E-value=3.8e-06  Score=73.79  Aligned_cols=55  Identities=18%  Similarity=0.216  Sum_probs=42.5

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCC-chhhhh
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFR-TTTLSR  307 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~-s~~ll~  307 (310)
                      +..|++++++++|++|..+  ++++.+|++.+  +|+...+.++ .||+|+|+. ++.++.
T Consensus       191 ~~~gv~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~  248 (310)
T 1fl2_A          191 SLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELA-GIFVQIGLLPNTNWLE  248 (310)
T ss_dssp             TCTTEEEESSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGGT
T ss_pred             hCCCeEEecCCceEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeeCCccCchHHh
Confidence            3479999999999999876  67888999886  4666788887 888898853 234544

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.99  E-value=4.3e-06  Score=76.05  Aligned_cols=35  Identities=37%  Similarity=0.712  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      ||||||||++|+++|+.|++. +|.+|+|+||.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999985 48999999998654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.99  E-value=3.4e-06  Score=79.07  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|||+.+..
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQL-GFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCc
Confidence            369999999999999999999998 9999999998643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.98  E-value=3.9e-06  Score=78.26  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~-g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence            58999999999999999999998 9999999997

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.97  E-value=5e-06  Score=78.35  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=30.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhc-cCCCeEEEEc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSE-VAHWSILLLE   87 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE   87 (310)
                      .+|||||||||++|+++|++|++ . |++|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc-CCEEEEEe
Confidence            36999999999999999999999 8 99999999

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.96  E-value=4.4e-06  Score=78.06  Aligned_cols=33  Identities=33%  Similarity=0.599  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +|||||||+|++|+++|.+|++. |++|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~-G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL-GLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            58999999999999999999998 9999999997

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.94  E-value=4.1e-06  Score=74.35  Aligned_cols=51  Identities=8%  Similarity=0.047  Sum_probs=41.0

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCC--eEEEEEEEE--CCeEEEEEcCeEEEEeccC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATK--KAYGVQFIR--HGIKQTVLARREELEVISF  300 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~--~v~GV~~~~--~g~~~~i~A~k~VIlaaG~  300 (310)
                      ...++.|++++++++|++|..+  ++  ++.+|.+.+  +|+..++.++ .||+|+|+
T Consensus       203 ~~~~~~gv~i~~~~~v~~i~~~--~~~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~  257 (333)
T 1vdc_A          203 RALSNPKIDVIWNSSVVEAYGD--GERDVLGGLKVKNVVTGDVSDLKVS-GLFFAIGH  257 (333)
T ss_dssp             HHHTCTTEEEECSEEEEEEEES--SSSSSEEEEEEEETTTCCEEEEECS-EEEECSCE
T ss_pred             HHHhCCCeeEecCCceEEEeCC--CCccceeeEEEEecCCCceEEEecC-EEEEEeCC
Confidence            3446789999999999999876  44  788898876  5666678897 88999984

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.91  E-value=7.1e-06  Score=76.78  Aligned_cols=39  Identities=36%  Similarity=0.447  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~~~   94 (310)
                      ..+||+|||+|++|+++|++|++. |. +|+|+|+.+...+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~-g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGG   42 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc-CCCceEEEeCCCCCCC
Confidence            468999999999999999999997 88 8999999876544

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.90  E-value=8.6e-06  Score=80.79  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||||||+|++|+++|++|++. |.+|+|||+.+..++
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~-g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNF-GIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEecccceec
Confidence            468999999999999999999998 999999999875543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.89  E-value=6.9e-06  Score=76.79  Aligned_cols=34  Identities=41%  Similarity=0.665  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||+||||+|++|+++|.+|++. |++|+|+|+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~-g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL-GLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            69999999999999999999997 99999999986

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.89  E-value=7.2e-06  Score=76.56  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|+|+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEccC
Confidence            359999999999999999999998 9999999994

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.89  E-value=1.3e-05  Score=74.91  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+||+|||||++|+++|.+|++. |++|+|+|+.+...
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~-G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK-GYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCC
Confidence            468999999999999999999998 99999999987544

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.86  E-value=1.1e-05  Score=73.45  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=30.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      ..||+||||+|++|+++|.+|++. |  .+|+|+|+.+
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKL-DGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTT-CSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhh-CCCCCEEEEECCC
Confidence            468999999999999999999997 7  5699999875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.83  E-value=1.3e-05  Score=74.21  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=41.9

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEE--cCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILV--NPATKKAYGVQFIRHGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~--~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      .+.+..++.|++++++++|++|..  +  ++++.+|.+. +|+  .+.++ .||+|.|... ..+++
T Consensus       196 ~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~v~~v~~~-~G~--~i~~D-~Vv~a~G~~p~~~l~~  256 (431)
T 1q1r_A          196 FYEHLHREAGVDIRTGTQVCGFEMSTD--QQKVTAVLCE-DGT--RLPAD-LVIAGIGLIPNCELAS  256 (431)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECTT--TCCEEEEEET-TSC--EEECS-EEEECCCEEECCHHHH
T ss_pred             HHHHHHHhCCeEEEeCCEEEEEEeccC--CCcEEEEEeC-CCC--EEEcC-EEEECCCCCcCcchhh
Confidence            344455678999999999999987  4  6778788764 453  57787 8999999543 24544

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.83  E-value=1.5e-05  Score=76.98  Aligned_cols=42  Identities=24%  Similarity=0.353  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV   95 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~   95 (310)
                      ++.+|||||||+|..|++.|..|++. |++||+|||.+..++.
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~-g~~vl~id~~~~~gg~   46 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGGN   46 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCGG
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCCcccCc
Confidence            45689999999999999999999998 9999999999887753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.82  E-value=1.1e-05  Score=77.96  Aligned_cols=34  Identities=32%  Similarity=0.513  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..|||||||||++|+++|.+|++. |++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~-g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKY-GAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHT-TCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhC-CCeEEEEecc
Confidence            469999999999999999999998 9999999984

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.81  E-value=8.9e-06  Score=76.76  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhcc-C-CCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEV-A-HWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~-~-g~~VlllE~g~   90 (310)
                      +|||||||||++|+++|++|++. + |++|+|||+.+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999995 2 89999999986

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.78  E-value=1.4e-05  Score=75.83  Aligned_cols=49  Identities=20%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             cCC-CCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC
Q psy17311        249 RKR-KNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF  300 (310)
Q Consensus       249 ~~~-~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~  300 (310)
                      .++ .|+++++++.|++|..+  ++++.+|.+.+  +|+...+.++ .||+|.|.
T Consensus       400 l~~~~gV~v~~~~~v~~i~~~--~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~  451 (521)
T 1hyu_A          400 VRSLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHSVALA-GIFVQIGL  451 (521)
T ss_dssp             HTTCTTEEEECSEEEEEEEEC--SSSEEEEEEEETTTCCEEEEECS-EEEECCCE
T ss_pred             HhcCCCcEEEeCCEEEEEEcC--CCcEEEEEEEeCCCCceEEEEcC-EEEECcCC
Confidence            344 79999999999999876  77899999986  4666788887 88889884

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.75  E-value=2.7e-05  Score=76.94  Aligned_cols=38  Identities=18%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+||+|||||++|+++|..|++. |++|+|+|+.+...
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~-G~~Vtlie~~~~~G  425 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIG  425 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcC
Confidence            468999999999999999999998 99999999987544

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.71  E-value=2.2e-05  Score=79.92  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ...|||||||+|++|+++|.+|++. |++|+|||+.+...
T Consensus       126 ~~~~dVvVIGaGpAGl~AA~~la~~-G~~V~lie~~~~~G  164 (965)
T 2gag_A          126 HVHTDVLVVGAGPAGLAAAREASRS-GARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCC
Confidence            3468999999999999999999997 99999999986543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.71  E-value=2.2e-05  Score=73.04  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      +|+||||+|++|+++|.+|++. +|.+|+|+|+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            6999999999999999999985 3899999999874

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.69  E-value=3.2e-05  Score=75.56  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=35.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...+||+|||+|++|+++|++|++. |++|+|+|+.+..++
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~-g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence            3468999999999999999999997 999999999876543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.68  E-value=3.6e-05  Score=75.30  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=34.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+||||||+|++|+.+|..|++. |++|+|+|+.+...
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~-g~~V~lie~~~~~g  409 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIG  409 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence            468999999999999999999997 99999999986543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=2.9e-05  Score=70.32  Aligned_cols=34  Identities=21%  Similarity=0.478  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -|+||||+|+||+++|.+|++. | +|+|+|+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCC
Confidence            5999999999999999999997 8 99999998753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.67  E-value=3.2e-05  Score=72.83  Aligned_cols=41  Identities=22%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      .++..+||||||+|++|+++|..|.+. .+.+|+|||+.+..
T Consensus         7 ~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            7 KAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             -CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            345679999999999999999888763 37899999998643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.66  E-value=2.2e-05  Score=73.83  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC---CeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH---WSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g---~~VlllE~g~~   91 (310)
                      ++||||||+|++|+++|.+|++. |   .+|+|||+.+.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~-g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTN-YGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-HGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc-CCCCCeEEEEECCCC
Confidence            58999999999999999999997 6   99999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.66  E-value=3.6e-05  Score=70.66  Aligned_cols=37  Identities=16%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~~~   92 (310)
                      ..+|+||||+|++|+++|.+|++. |.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHcc-CCCCeEEEEECCCCC
Confidence            468999999999999999999997 76  59999998643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.63  E-value=3.8e-05  Score=71.42  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~   93 (310)
                      .||||||+|++|+++|.+|++. +|.+|+|||+.+..+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5999999999999999999984 478999999987544

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.62  E-value=3.9e-05  Score=71.02  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhc---cCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSE---VAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae---~~g~~VlllE~g~~   91 (310)
                      ..||||||||.+|+++|.+|++   . |.+|+|||+.+.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~-g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGS-GHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGG-GSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCC-cCEEEEEeCCCC
Confidence            3699999999999999999999   6 899999999874

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.62  E-value=3.4e-05  Score=70.72  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhc---cCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSE---VAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae---~~g~~VlllE~g~~   91 (310)
                      ||||||||++|+++|.+|++   . |.+|+|||+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~-g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGS-KADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGG-GSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCC-CCeEEEEeCCCC
Confidence            89999999999999999999   7 899999999874

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.61  E-value=5.3e-05  Score=75.76  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+||+|||+|++|+++|++|++. |++|+|+|+.+..++
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~-g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCcCCC
Confidence            468999999999999999999997 999999999876543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.60  E-value=3.9e-05  Score=72.00  Aligned_cols=37  Identities=24%  Similarity=0.458  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      .+||||||+|++|+++|.+|++. +|.+|+|||+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            36999999999999999999984 48899999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.60  E-value=4.9e-05  Score=73.14  Aligned_cols=39  Identities=31%  Similarity=0.487  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~   93 (310)
                      ...||||||||++|+++|.+|++. +|.+|+|+|+.+..+
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            357999999999999999999985 378999999987643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.59  E-value=5.2e-05  Score=70.45  Aligned_cols=37  Identities=32%  Similarity=0.587  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      .+||||||+|++|+++|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999985 36899999998754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.57  E-value=0.00082  Score=58.63  Aligned_cols=32  Identities=38%  Similarity=0.558  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. +.+|.++++.+
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  177 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  177 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-BSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHh-CCEEEEEEeCc
Confidence            699999999999999999997 89999999875

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.56  E-value=4.7e-05  Score=70.69  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~   92 (310)
                      +||||||+|++|+++|.+|++. +|.+|+|+|+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            4899999999999999999985 37899999998753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.56  E-value=0.00063  Score=59.61  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  178 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD  178 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCC
Confidence            3799999999999999999997 99999999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.55  E-value=0.00062  Score=60.91  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. +.+|.++++.+
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~-g~~V~lv~~~~  196 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKN-AASVTLVHRGH  196 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTT-SSEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCC
Confidence            699999999999999999997 99999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.55  E-value=0.00058  Score=64.70  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=38.4

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchh
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTT  304 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~  304 (310)
                      .++.|++++++++|++|..++ ++++.++.+..++...++.++ .||+|+|.+...
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~-~~~v~~~~v~~~~G~~~i~aD-~Vv~A~G~~p~~  318 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGEMRIETD-FVFLGLGEQPRS  318 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEEEEEECS-CEEECCCCEECC
T ss_pred             HHhCCcEEEECCEEEEEEEcC-CCceEEEEEEECCCcEEEEcC-EEEECcCCccCC
Confidence            355799999999999998753 456766655543322368887 899999965543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.54  E-value=0.00047  Score=60.57  Aligned_cols=32  Identities=34%  Similarity=0.595  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       157 ~v~viG~G~~g~e~a~~l~~~-g~~V~~i~~~~  188 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSEY-VKNVTIIEYMP  188 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-BSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhh-CCcEEEEEcCC
Confidence            699999999999999999997 99999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.54  E-value=0.00043  Score=64.56  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  202 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRL-GAEVTLIEYMP  202 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCeEEEEEcCC
Confidence            3799999999999999999997 99999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.52  E-value=5.4e-05  Score=70.77  Aligned_cols=58  Identities=16%  Similarity=0.115  Sum_probs=41.4

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      ..+.+..++.|++++++++|++|..+  ++++. |.+. +|+  ++.++ .||+|+|... ..+++
T Consensus       206 ~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~-v~~~-~g~--~i~aD-~Vv~a~G~~p~~~l~~  264 (472)
T 3iwa_A          206 QMLRHDLEKNDVVVHTGEKVVRLEGE--NGKVA-RVIT-DKR--TLDAD-LVILAAGVSPNTQLAR  264 (472)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEES--SSBEE-EEEE-SSC--EEECS-EEEECSCEEECCHHHH
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEcc--CCeEE-EEEe-CCC--EEEcC-EEEECCCCCcCHHHHH
Confidence            34445567789999999999999886  66665 5554 554  67887 8999999653 23543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.46  E-value=8.8e-05  Score=75.98  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~~   93 (310)
                      ..+||+|||||+||+++|.+|++. |+ +|+|+|+.+...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~-G~~~Vtv~E~~~~~G  224 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARL-GYSDITIFEKQEYVG  224 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc-CCCcEEEEeCCCCCC
Confidence            368999999999999999999998 98 799999986544

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.43  E-value=0.00011  Score=68.71  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=33.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~~   93 (310)
                      .+||||||+|++|+.+|.+|++. |  .+|+|+|+.+...
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKH-HSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CSSCEEEEECSSSSSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhc-CCCCCEEEEeCCCcCC
Confidence            58999999999999999999997 7  9999999987543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.42  E-value=0.0019  Score=56.77  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~  185 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKF-ADEVTVIHRRD  185 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence            699999999999999999997 99999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.41  E-value=0.0038  Score=57.83  Aligned_cols=49  Identities=4%  Similarity=-0.025  Sum_probs=37.5

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFR  301 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~  301 (310)
                      ....|++++++++|+++..+  ++. ..|.+.+  +|+..++.++ .||+|+|+.
T Consensus       326 ~~~~~v~i~~~~~v~~v~~~--~~~-~~v~~~~~~~g~~~~~~~D-~Vv~AtG~~  376 (463)
T 3s5w_A          326 SGIPRHAFRCMTTVERATAT--AQG-IELALRDAGSGELSVETYD-AVILATGYE  376 (463)
T ss_dssp             HCCCCSEEETTEEEEEEEEE--TTE-EEEEEEETTTCCEEEEEES-EEEECCCEE
T ss_pred             cCCCCeEEEeCCEEEEEEec--CCE-EEEEEEEcCCCCeEEEECC-EEEEeeCCC
Confidence            34579999999999999877  444 3466654  5766778998 899999954

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.38  E-value=0.002  Score=56.80  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~-g~~V~lv~~~~  192 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRD  192 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHhc-CCeEEEEecCC
Confidence            3799999999999999999997 99999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.38  E-value=0.001  Score=62.07  Aligned_cols=33  Identities=27%  Similarity=0.427  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  216 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQP  216 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCC
Confidence            3699999999999999999997 99999999875

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.38  E-value=0.0012  Score=61.25  Aligned_cols=33  Identities=24%  Similarity=0.445  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  203 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANF-GTKVTILEGAG  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            4799999999999999999997 99999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.35  E-value=0.00062  Score=61.71  Aligned_cols=33  Identities=18%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  178 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSG-GYQLDVVAPCE  178 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence            4799999999999999999998 99999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.34  E-value=0.0017  Score=61.48  Aligned_cols=32  Identities=38%  Similarity=0.558  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       357 ~V~ViGgG~~g~E~A~~L~~~-g~~Vtlv~~~~  388 (521)
T 1hyu_A          357 RVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAP  388 (521)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-BSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCc
Confidence            799999999999999999998 89999999875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.31  E-value=0.00016  Score=69.08  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~   93 (310)
                      .||||||||++|+++|.+|++. ++.+|+|+|+.+...
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            3899999999999999999985 368999999987643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.28  E-value=0.00012  Score=71.71  Aligned_cols=36  Identities=25%  Similarity=0.543  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC--------CeEEEEcCCC-CC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH--------WSILLLEAGP-DE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g--------~~VlllE~g~-~~   92 (310)
                      ..+|+|||+|++|+++|++|++. |        .+|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~-g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL-AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CcccccCCCceEEEEeccCccc
Confidence            47999999999999999999997 7        8999999987 44

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.28  E-value=0.00015  Score=67.59  Aligned_cols=38  Identities=21%  Similarity=0.351  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhc-c-C----CCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSE-V-A----HWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae-~-~----g~~VlllE~g~~~~   93 (310)
                      .+||+|||+|++|+.+|.+|++ . +    |.+|+|+|+.+...
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g   46 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   46 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC
Confidence            5899999999999999999988 5 2    78999999986543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.28  E-value=0.00088  Score=62.11  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  182 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQ-NYNVNLIDGHE  182 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSS
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCEEEEEEcCC
Confidence            699999999999999999997 99999999875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.22  E-value=0.0014  Score=60.43  Aligned_cols=33  Identities=30%  Similarity=0.509  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~-G~~Vtlv~~~~  182 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKA-NMHVTLLDTAA  182 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCC
Confidence            3799999999999999999998 99999999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.16  E-value=0.0039  Score=54.85  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~-g~~V~~v~~~~  185 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDT-ARRITLIHRRP  185 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTT-SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEcCC
Confidence            3799999999999999999997 99999999875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.14  E-value=0.0019  Score=60.18  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  211 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRL-GADVTAVEFLG  211 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeccC
Confidence            699999999999999999997 99999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.13  E-value=0.00031  Score=64.98  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~~   92 (310)
                      .|||||+|+||+++|.+|++. |  .+|+|+|+.+..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~-g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRL-DKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-CSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCCCcEEEEeCCCCC
Confidence            489999999999999999987 6  579999998643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.09  E-value=0.002  Score=59.78  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  180 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKM-KKTVHVFESLE  180 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence            3699999999999999999998 99999999875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.06  E-value=0.00039  Score=63.30  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .|||||+|+||+++|.+|.+. ++.+|+|||+.+.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            489999999999999999875 2469999998764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.05  E-value=0.0023  Score=59.53  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  204 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNY-GVDVTIVEFLP  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            3699999999999999999997 99999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.01  E-value=0.0025  Score=59.78  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  227 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRK-GKEVVLIDVVD  227 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEEccc
Confidence            3699999999999999999998 99999999875

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.01  E-value=0.00067  Score=61.70  Aligned_cols=38  Identities=16%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ....|||||+|+||+++|.+|... +.+|+|+|+.+..+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~-~~~itlie~~~~~~   45 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGK-CDDITMINSEKYLP   45 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTT-CSCEEEECSSSSCC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCC-CCEEEEEECCCCCC
Confidence            356899999999999999999664 89999999987543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0025  Score=59.55  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  218 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGL-GSETHLVIRGE  218 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCceEEEEeCC
Confidence            699999999999999999997 89999999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.99  E-value=0.00053  Score=64.64  Aligned_cols=34  Identities=6%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ...|||||||.||+.+|.+|++. +++|+|||+.+
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~-~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTK-KYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTT-TCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhC-CCcEEEECCCC
Confidence            45799999999999999999986 89999999975

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.98  E-value=0.0048  Score=57.85  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  207 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRL-GVIVKVFGRSG  207 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHT-TCEEEEECCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECC
Confidence            3699999999999999999998 99999999875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.94  E-value=0.003  Score=59.34  Aligned_cols=32  Identities=9%  Similarity=0.243  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  209 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGN  209 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSS
T ss_pred             eEEEECChHHHHHHHHHHHHc-CCeEEEEecCC
Confidence            689999999999999999997 89999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.92  E-value=0.0045  Score=57.66  Aligned_cols=33  Identities=27%  Similarity=0.269  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  213 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARL-GAEVTVLEAMD  213 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence            3699999999999999999997 99999999875

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.92  E-value=0.0017  Score=60.18  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus       169 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~  200 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFD  200 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCEEEEEEeCC
Confidence            699999999999999999997 99999999875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.89  E-value=0.005  Score=57.27  Aligned_cols=32  Identities=28%  Similarity=0.508  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  207 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARL-GAEVTVVEFAP  207 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCEEEEEecCC
Confidence            689999999999999999997 99999999875

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.88  E-value=0.0035  Score=58.33  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~-G~~Vtlv~~~~  199 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSF-GSEVTVVALED  199 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCC
Confidence            699999999999999999998 99999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.0047  Score=57.85  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  231 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARL-GAKVTVVEFLD  231 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEeccc
Confidence            689999999999999999998 99999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.86  E-value=0.0025  Score=59.28  Aligned_cols=33  Identities=21%  Similarity=0.345  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  210 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFAS  210 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence            3699999999999999999998 99999999875

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.85  E-value=0.0039  Score=55.04  Aligned_cols=47  Identities=13%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF  300 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~  300 (310)
                      ++.|++++++++|++|..+  + ++.+|.+.+  +|+...+.++ .||+|.|+
T Consensus       202 ~~~gV~v~~~~~v~~i~~~--~-~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~  250 (335)
T 2a87_A          202 NNDKIRFLTNHTVVAVDGD--T-TVTGLRVRDTNTGAETTLPVT-GVFVAIGH  250 (335)
T ss_dssp             HCTTEEEECSEEEEEEECS--S-SCCEEEEEEETTSCCEEECCS-CEEECSCE
T ss_pred             ccCCcEEEeCceeEEEecC--C-cEeEEEEEEcCCCceEEeecC-EEEEccCC
Confidence            3579999999999999765  3 567788775  5655578887 88999994

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.74  E-value=0.0083  Score=56.09  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=35.2

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccC
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISF  300 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~  300 (310)
                      ++.|+++++++.|++|...+ ++. ..|.+.+  +|+..++.++ .||+|.|.
T Consensus       236 ~~~gv~~~~~~~v~~i~~~~-~~~-~~v~~~~~~~g~~~~~~~D-~vi~a~G~  285 (488)
T 3dgz_A          236 ESHGTQFLKGCVPSHIKKLP-TNQ-LQVTWEDHASGKEDTGTFD-TVLWAIGR  285 (488)
T ss_dssp             HHTTCEEEETEEEEEEEECT-TSC-EEEEEEETTTTEEEEEEES-EEEECSCE
T ss_pred             HHCCCEEEeCCEEEEEEEcC-CCc-EEEEEEeCCCCeeEEEECC-EEEEcccC
Confidence            45699999999999998752 333 3466665  3666678887 89999994

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.73  E-value=0.0043  Score=57.73  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++..|.+|.++|+.+
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~  193 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD  193 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence            3799999999999999999984378999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.67  E-value=0.0087  Score=55.76  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~  220 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHD  220 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence            3699999999999999999998 99999999875

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.67  E-value=0.0083  Score=55.99  Aligned_cols=49  Identities=10%  Similarity=0.031  Sum_probs=35.9

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEEC--CeEEEEEcCeEEEEeccC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRH--GIKQTVLARREELEVISF  300 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~--g~~~~i~A~k~VIlaaG~  300 (310)
                      .++.|++++++++|++|..++ +++ ..|.+.+.  ++..++.++ .||+|.|.
T Consensus       237 l~~~Gv~i~~~~~v~~i~~~~-~~~-~~v~~~~~~~~~~~~~~~D-~vi~a~G~  287 (483)
T 3dgh_A          237 MEERGIPFLRKTVPLSVEKQD-DGK-LLVKYKNVETGEESEDVYD-TVLWAIGR  287 (483)
T ss_dssp             HHHTTCCEEETEEEEEEEECT-TSC-EEEEEEETTTCCEEEEEES-EEEECSCE
T ss_pred             HHhCCCEEEeCCEEEEEEEcC-CCc-EEEEEecCCCCceeEEEcC-EEEECccc
Confidence            345689999999999998762 333 34777652  455678897 88999984

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.005  Score=57.22  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vt~v~~~~  203 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGL-GVKTTLIYRGK  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            3689999999999999999997 89999999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.52  E-value=0.011  Score=55.44  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~  215 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTEL-GVPVTVVASQD  215 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence            3689999999999999999987 88999998875

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.50  E-value=0.0051  Score=57.64  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=34.3

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      +++.|++++++++|++|..+  ++....|++. +|+  ++.++ .||+|+|...
T Consensus       241 l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~-~G~--~i~~D-~vv~a~G~~p  288 (490)
T 1fec_A          241 LRANGINVRTHENPAKVTKN--ADGTRHVVFE-SGA--EADYD-VVMLAIGRVP  288 (490)
T ss_dssp             HHHTTEEEEETCCEEEEEEC--TTSCEEEEET-TSC--EEEES-EEEECSCEEE
T ss_pred             HHhCCCEEEeCCEEEEEEEc--CCCEEEEEEC-CCc--EEEcC-EEEEccCCCc
Confidence            34579999999999999876  4333455543 454  57887 8899999543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.46  E-value=0.0053  Score=57.37  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~-g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGL-GVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence            3799999999999999999997 99999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.40  E-value=0.0084  Score=56.26  Aligned_cols=46  Identities=20%  Similarity=0.179  Sum_probs=33.7

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      +++.|++++++++|++|..+  ++....|++. +|+  ++.++ .||+|+|.
T Consensus       245 l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~-~G~--~i~~D-~vv~a~G~  290 (495)
T 2wpf_A          245 LTANGIEIMTNENPAKVSLN--TDGSKHVTFE-SGK--TLDVD-VVMMAIGR  290 (495)
T ss_dssp             HHHTTCEEEESCCEEEEEEC--TTSCEEEEET-TSC--EEEES-EEEECSCE
T ss_pred             HHhCCCEEEeCCEEEEEEEc--CCceEEEEEC-CCc--EEEcC-EEEECCCC
Confidence            34579999999999999876  4333456553 554  57887 89999994

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.31  E-value=0.024  Score=49.46  Aligned_cols=53  Identities=6%  Similarity=0.008  Sum_probs=39.0

Q ss_pred             CCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      +.|++++++++|++|..+  ++ +.+|.+.+  +++..++.++ .||+|.|+.. +.++.
T Consensus       201 ~~gv~~~~~~~v~~i~~~--~~-~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~  256 (332)
T 3lzw_A          201 ASKVNVLTPFVPAELIGE--DK-IEQLVLEEVKGDRKEILEID-DLIVNYGFVSSLGPIK  256 (332)
T ss_dssp             HSSCEEETTEEEEEEECS--SS-CCEEEEEETTSCCEEEEECS-EEEECCCEECCCGGGG
T ss_pred             cCCeEEEeCceeeEEecC--Cc-eEEEEEEecCCCceEEEECC-EEEEeeccCCCchHHh
Confidence            468999999999999765  44 67888876  4556678887 8999999433 34444

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.30  E-value=0.015  Score=54.57  Aligned_cols=52  Identities=15%  Similarity=0.244  Sum_probs=36.7

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc-hhhhh
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT-TTLSR  307 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s-~~ll~  307 (310)
                      .++.|++++++++|++|..+  ++++ .|++. +|+  ++.++ .||+|+|... ..+++
T Consensus       236 l~~~GV~v~~~~~V~~i~~~--~~~~-~v~l~-dG~--~i~aD-~Vv~a~G~~pn~~l~~  288 (493)
T 1m6i_A          236 VRREGVKVMPNAIVQSVGVS--SGKL-LIKLK-DGR--KVETD-HIVAAVGLEPNVELAK  288 (493)
T ss_dssp             HHTTTCEEECSCCEEEEEEE--TTEE-EEEET-TSC--EEEES-EEEECCCEEECCTTHH
T ss_pred             HHhcCCEEEeCCEEEEEEec--CCeE-EEEEC-CCC--EEECC-EEEECCCCCccHHHHH
Confidence            45679999999999999876  5544 55543 553  57887 8999999543 33543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.14  E-value=0.025  Score=57.91  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|+|||+|..|+-+|..|.+. |. +|.++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~-G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC-GARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHc-CCCEEEEEEecC
Confidence            799999999999999999998 75 899999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.11  E-value=0.016  Score=54.51  Aligned_cols=33  Identities=36%  Similarity=0.616  Sum_probs=27.3

Q ss_pred             cEEEECCChhHHHHHHHHhcc-------------CCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-------------AHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-------------~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++.             ...+|.|+|+++
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~  264 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALP  264 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccc
Confidence            699999999999999998863             125788998876

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.81  E-value=0.024  Score=57.69  Aligned_cols=48  Identities=10%  Similarity=0.012  Sum_probs=37.1

Q ss_pred             CCCcEEecCcEEEEEEEcCCCCeEEEEEEEE------CCeEEEEEcCeEEEEeccC
Q psy17311        251 RKNLHIAMRAHVTKILVNPATKKAYGVQFIR------HGIKQTVLARREELEVISF  300 (310)
Q Consensus       251 ~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~------~g~~~~i~A~k~VIlaaG~  300 (310)
                      +.|++|++++.|++|..++ ++++.+|++.+      +|+..++.++ .||+|+|.
T Consensus       328 ~~GV~v~~~~~v~~i~~~~-~~~v~~v~~~~~~~~~~~G~~~~i~~D-~Vv~a~G~  381 (965)
T 2gag_A          328 ADGVQVISGSVVVDTEADE-NGELSAIVVAELDEARELGGTQRFEAD-VLAVAGGF  381 (965)
T ss_dssp             HTTCCEEETEEEEEEEECT-TSCEEEEEEEEECTTCCEEEEEEEECS-EEEEECCE
T ss_pred             hCCeEEEeCCEeEEEeccC-CCCEEEEEEEeccccCCCCceEEEEcC-EEEECCCc
Confidence            4688999999999997632 35788898876      3545678998 89999994

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=95.62  E-value=0.0092  Score=55.07  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+++|||+|.+|+.+|..|++. |.+|+|+|+++...
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  185 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDRPL  185 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCcccc
Confidence            46999999999999999999997 99999999987543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.47  E-value=0.038  Score=53.98  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             cEEEEC--CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG--GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG--aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|||  +|..|+-+|..|++. |.+|.++++.+
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~-g~~Vtlv~~~~  558 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQK-GYEVSIVTPGA  558 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEEEcCCCCccHHHHHHHHHhC-CCeeEEEeccc
Confidence            499999  999999999999998 99999999775

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.43  E-value=0.014  Score=45.53  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-.++|||+|..|..+|..|.+. |.+|+++++.+
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            34799999999999999999997 89999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.39  E-value=0.014  Score=44.48  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|+|+|..|..+|..|.+. |++|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            699999999999999999998 99999999853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.33  E-value=0.022  Score=43.61  Aligned_cols=33  Identities=15%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =.++|||.|..|..+|..|.+. |++|+++|+.+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            4799999999999999999997 99999999864

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.23  E-value=0.021  Score=49.65  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++...
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKF-ADKVTIVHRRDELR  181 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEECSSSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCEEEEEecccccC
Confidence            699999999999999999997 99999999987543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.21  E-value=0.019  Score=43.37  Aligned_cols=33  Identities=30%  Similarity=0.423  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..++|||+|..|..+|..|.+. |.+|.++|+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~-g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            3699999999999999999997 89999999753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.09  E-value=0.019  Score=51.94  Aligned_cols=36  Identities=17%  Similarity=0.056  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+...
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS-GTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH-TCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccc
Confidence            3799999999999999999998 99999999987643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.93  E-value=0.022  Score=52.80  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      -.++|||+|.+|+-+|..|++. |.+|.|+|+++...+
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCCcccc
Confidence            3799999999999999999998 999999999876543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.80  E-value=0.026  Score=43.76  Aligned_cols=32  Identities=16%  Similarity=0.136  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -.++|+|+|..|...|..|.+. |.+|+++|+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~-g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR-GQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Confidence            3699999999999999999997 9999999985

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=94.79  E-value=0.028  Score=51.96  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|.+|+-+|..|++. |.+|.|+|+++...
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~-g~~V~lv~~~~~~l  203 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRL-GAEVIVLEYMDRIL  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCCccc
Confidence            3699999999999999999997 99999999987543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.66  E-value=0.034  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~-G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY-GSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHh-CCeeeeecccccc
Confidence            3699999999999999999998 9999999987653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.63  E-value=0.029  Score=50.39  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+++...+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCeecc
Confidence            4799999999999999999998 999999999875443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.58  E-value=0.033  Score=40.59  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~   90 (310)
                      -.++|+|+|..|..+|..|.+. | ++|.++++.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCH
Confidence            3699999999999999999998 8 8999999863

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=94.51  E-value=0.034  Score=51.45  Aligned_cols=56  Identities=13%  Similarity=0.008  Sum_probs=42.7

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTL  305 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~l  305 (310)
                      |.+.+++.|++|+++++|++|..++.+++++||..  +|+  .++|+ .||+|+|.|++++
T Consensus       248 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~--~g~--~~~ad-~VV~a~~~~~~~l  303 (453)
T 2bcg_G          248 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT--KLG--TFKAP-LVIADPTYFPEKC  303 (453)
T ss_dssp             HHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE--TTE--EEECS-CEEECGGGCGGGE
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE--CCe--EEECC-EEEECCCccchhh
Confidence            33445667999999999999998632467888875  454  57886 7899999988776

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.44  E-value=0.15  Score=49.50  Aligned_cols=47  Identities=11%  Similarity=0.128  Sum_probs=34.5

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFR  301 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~  301 (310)
                      ...++.|++++++++|++|. +  +    +|.+..+|+...+.++ .||+|+|+.
T Consensus       581 ~~l~~~GV~v~~~~~v~~i~-~--~----~v~~~~~G~~~~i~~D-~Vi~a~G~~  627 (671)
T 1ps9_A          581 TTLLSRGVKMIPGVSYQKID-D--D----GLHVVINGETQVLAVD-NVVICAGQE  627 (671)
T ss_dssp             HHHHHTTCEEECSCEEEEEE-T--T----EEEEEETTEEEEECCS-EEEECCCEE
T ss_pred             HHHHhcCCEEEeCcEEEEEe-C--C----eEEEecCCeEEEEeCC-EEEECCCcc
Confidence            34456799999999999985 2  2    2444357766688897 899999954

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.21  E-value=0.035  Score=42.00  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|+|+|..|..+|..|.+. |.+|.++++.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~-g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            599999999999999999997 89999999753

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=93.88  E-value=0.049  Score=49.54  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+...
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l  181 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPRLM  181 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEEeCCccc
Confidence            4799999999999999999997 99999999987543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=93.85  E-value=0.034  Score=51.82  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -+++|||+|..|+-+|..|++. |.+|+|+|+++...
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  222 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVEL-GKKVRMIERNDHIG  222 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHT-TCEEEEECCGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeCCchh
Confidence            5799999999999999999997 99999999986543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=93.80  E-value=0.05  Score=47.86  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|.|||+|..|...|..++.+ |++|+|+|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~-G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASG-GFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            3699999999999999999998 99999999754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.73  E-value=0.058  Score=47.40  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|+..|..|+++ |.+|.++.+.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKT-GHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHT-TCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCh
Confidence            589999999999999999997 99999999864

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.67  E-value=0.036  Score=50.92  Aligned_cols=54  Identities=13%  Similarity=0.139  Sum_probs=42.4

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTL  305 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~l  305 (310)
                      |.+.+++.|++|+++++|++|..+  ++++.+|..  +|+  +++|+ .||+++|.++.++
T Consensus       240 l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~~--~g~--~~~ad-~VV~a~~~~~~~~  293 (433)
T 1d5t_A          240 FARLSAIYGGTYMLNKPVDDIIME--NGKVVGVKS--EGE--VARCK-QLICDPSYVPDRV  293 (433)
T ss_dssp             HHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEEE--TTE--EEECS-EEEECGGGCGGGE
T ss_pred             HHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEEE--CCe--EEECC-EEEECCCCCcccc
Confidence            334455679999999999999998  788988863  564  57886 8999999887654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.61  E-value=0.06  Score=47.12  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|+..|..|+++ |.+|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~-g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRS-GEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-SCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEEcCc
Confidence            589999999999999999997 99999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.42  E-value=0.064  Score=47.56  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+-+|..|++. |.+|.++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~-g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKN-GSDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHhc-CCeEEEEecCCC
Confidence            799999999999999999997 999999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.36  E-value=0.056  Score=44.56  Aligned_cols=32  Identities=16%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|..+|..|.+. |.+|+++|+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~-g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR-KYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            489999999999999999997 99999999764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=93.21  E-value=0.066  Score=49.85  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+|+.+...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMDGLM  221 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEECCccc
Confidence            3799999999999999999998 99999999987543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=93.08  E-value=0.092  Score=45.36  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+..
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANI-CKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEeeCCcc
Confidence            4799999999999999999998 9999999998654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=93.05  E-value=0.088  Score=48.40  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .++|||+|..|+-+|..+++. |.+|.|+|+++...+
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~ll~  184 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYER-GLHPTLIHRSDKINK  184 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSCCST
T ss_pred             EEEEECCccchhhhHHHHHhc-CCcceeeeeeccccc
Confidence            699999999999999999998 999999999876543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=92.92  E-value=0.085  Score=48.50  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~~   91 (310)
                      .|+|||+|..|+=+|..|++. +.+ |.|+++++.
T Consensus       214 ~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~~  247 (447)
T 2gv8_A          214 SVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGGG  247 (447)
T ss_dssp             CEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTCC
T ss_pred             EEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCCC
Confidence            799999999999999999998 888 999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.89  E-value=0.094  Score=45.58  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+++ |++|+++|+.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            499999999999999999997 99999999863

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=92.87  E-value=0.088  Score=48.42  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l  184 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQ-GKNVTMIVRGERVL  184 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEEcCCccc
Confidence            899999999999999999998 99999999987544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.81  E-value=0.093  Score=47.69  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKL-GLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCcc
Confidence            4799999999999999999997 9999999998754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.78  E-value=0.1  Score=44.97  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..|++. |++|.+.|+.+
T Consensus         6 kV~VIGaG~mG~~iA~~la~~-G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFH-GFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            589999999999999999998 99999999764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.76  E-value=0.11  Score=44.56  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+.|||+|..|...|..|++. |.+|.++++.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCcc
Confidence            378999999999999999997 999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.61  E-value=0.093  Score=46.39  Aligned_cols=31  Identities=26%  Similarity=0.489  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+.|||+|..|...|..|+++ |.+|.++++.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~-g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALA-GEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHT-TCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCEEEEEECh
Confidence            689999999999999999997 9999999984

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.60  E-value=0.076  Score=46.02  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|+++ |.+|.+++|..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~-g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQS-LPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-CTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEEecc
Confidence            589999999999999999998 89999999874

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=92.57  E-value=0.094  Score=48.61  Aligned_cols=33  Identities=9%  Similarity=0.076  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+=+|..|++. |.+|.++++.+.
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~-g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKY-GAKKLISCYRTA  231 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCSEEEEECSSC
T ss_pred             EEEEEcCCCCHHHHHHHHHHh-CCeEEEEEECCC
Confidence            699999999999999999998 999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=92.55  E-value=0.11  Score=49.28  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+-+|..|++. +.+|.|+++.+.
T Consensus       180 rV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  212 (540)
T 3gwf_A          180 RVGVIGTGSTGQQVITSLAPE-VEHLTVFVRTPQ  212 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-CSEEEEEESSCC
T ss_pred             eEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            699999999999999999998 999999999875

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.47  E-value=0.14  Score=41.97  Aligned_cols=34  Identities=9%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..+.|||+|..|...|..|++. |.+|.++++.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~-g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIA-GHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            4699999999999999999997 999999998653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.45  E-value=0.11  Score=43.95  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ...|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCCc
Confidence            35799999999999999999998 75 8999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=92.44  E-value=0.1  Score=49.45  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+-+|..|++. +.+|.|+++.+.
T Consensus       187 rV~VIG~G~tgve~a~~la~~-~~~Vtv~~r~~~  219 (545)
T 3uox_A          187 RVGVIGTGATGVQIIPIAAET-AKELYVFQRTPN  219 (545)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-BSEEEEEESSCC
T ss_pred             eEEEECCCccHHHHHHHHHhh-CCEEEEEEcCCC
Confidence            699999999999999999997 899999999875

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.42  E-value=0.12  Score=45.24  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      ..+.|||+|..|...|..|++. |.  +|.++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~-g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            3699999999999999999997 88  999999863

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.29  E-value=0.12  Score=47.82  Aligned_cols=35  Identities=14%  Similarity=0.128  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+++...
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l  212 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARL-GSKVTVLARNTLFF  212 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEEECCccC
Confidence            699999999999999999998 99999999987543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.15  E-value=0.094  Score=48.64  Aligned_cols=32  Identities=22%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+||+|+|-.|..+|..|++. |++|+|||+.+
T Consensus         5 ~iiI~G~G~vG~~la~~L~~~-~~~v~vId~d~   36 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVGE-NNDITIVDKDG   36 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCST-TEEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            599999999999999999997 99999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.12  E-value=0.15  Score=42.38  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .--|+|||+|-.|...|..|.+. |.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQE-GAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGG-CCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCC
Confidence            35799999999999999999998 9999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.11  E-value=0.11  Score=41.40  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||.|..|..+|..|.+..|.+|+++|+.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3699999999999999999883278999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.92  E-value=0.14  Score=44.35  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+.|||+|..|...|..|++. |++|.++++.
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQG-GNDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            589999999999999999997 9999999885

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.91  E-value=0.15  Score=48.20  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+...+
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHL-GIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCCccch
Confidence            799999999999999999998 999999999875443

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.82  E-value=0.16  Score=44.32  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|+..|..|+ + |.+|.++.+.+
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~-g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-L-YHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh-c-CCceEEEECCH
Confidence            5899999999999999999 7 89999999874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=91.78  E-value=0.17  Score=44.33  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      ..|.|||+|..|...|..|++. |. +|.|+|+.+
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~-g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD-NLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCc
Confidence            4699999999999999999998 87 999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=91.75  E-value=0.13  Score=48.87  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+-+|..|++. +.+|.|+++.+.
T Consensus       193 rV~VIG~G~sgve~a~~l~~~-~~~Vtv~~r~~~  225 (549)
T 4ap3_A          193 RVGVIGTGSSGIQSIPIIAEQ-AEQLFVFQRSAN  225 (549)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             EEEEECCCchHHHHHHHHHhh-CCEEEEEECCCC
Confidence            699999999999999999998 899999999875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=91.71  E-value=0.15  Score=46.09  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+...
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAK-GLEVDVVELAPRVM  178 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCCcch
Confidence            3699999999999999999998 99999999987544

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=91.68  E-value=0.14  Score=48.98  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASL-GGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCEEEEEECC
Confidence            699999999999999999998 9999999997

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.68  E-value=0.11  Score=44.63  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --|+|||+|-.|...|..|.+. |.+|+|++...
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~-Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPT-GCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG-TCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-CCEEEEEcCCC
Confidence            4699999999999999999998 99999998643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=91.59  E-value=0.22  Score=48.09  Aligned_cols=56  Identities=13%  Similarity=0.109  Sum_probs=40.2

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      ....|.+.+++.|+++++++.|++|+++.++++++||. ..+|+  +++|+ .||.....
T Consensus       380 L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~-~~~Ge--~i~A~-~VVs~~~~  435 (650)
T 1vg0_A          380 LPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVI-DQFGQ--RIISK-HFIIEDSY  435 (650)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEE-ETTSC--EEECS-EEEEEGGG
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEE-eCCCC--EEEcC-EEEEChhh
Confidence            33345566778899999999999999983128999987 33464  57786 56665553

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.56  E-value=0.16  Score=46.10  Aligned_cols=36  Identities=36%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++|+.+...
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKF-GVNVTLLEALPRVL  188 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCchh
Confidence            4699999999999999999997 99999999987543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=91.52  E-value=0.18  Score=43.86  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++.+...
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~-g~~v~~v~~~~~~~  209 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKY-GSKVFMLVRKDHLR  209 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEcCCccC
Confidence            4699999999999999999998 99999999987543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.49  E-value=0.19  Score=44.87  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|..|.+.|..|+++ |.+|.+.++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~-G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK-GQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT-TCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4799999999999999999998 99999999853

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=91.45  E-value=0.17  Score=46.78  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+++...
T Consensus       174 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  208 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRLM-GVQTHIIEMLDRAL  208 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHHc-CCEEEEEEeCCcCC
Confidence            699999999999999999997 99999999987544

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.37  E-value=0.17  Score=44.38  Aligned_cols=31  Identities=19%  Similarity=0.452  Sum_probs=28.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..+.|||+|..|...|..|+++ |.+|.++ +.
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~-G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARA-GHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-CCeEEEE-Ec
Confidence            4699999999999999999997 9999998 54

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.31  E-value=0.46  Score=42.76  Aligned_cols=34  Identities=26%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      +--|||+|+|.+|..+|..|... |. +|.++|+.+
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~-Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAA-GATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCC
Confidence            46899999999999999999998 87 999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.24  E-value=0.17  Score=47.13  Aligned_cols=33  Identities=24%  Similarity=0.551  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ...+.|||+|..|+..|..|+++ |++|+++++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~-G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI-GHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            35789999999999999999998 9999999975

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=91.07  E-value=0.13  Score=46.65  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC-Cchhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF-RTTTLS  306 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~-~s~~ll  306 (310)
                      |.+.+++.|++|+++++|++|..+  ++++  |  ..+|+  .+.|+ .||+|+|. .+.+|+
T Consensus       195 l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V--~~~g~--~~~ad-~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          195 LERIIMENKGKILTRKEVVEINIE--EKKV--Y--TRDNE--EYSFD-VAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHTTTCEEESSCCEEEEETT--TTEE--E--ETTCC--EEECS-EEEECSCHHHHHHHH
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEEE--CCEE--E--EeCCc--EEEeC-EEEECCCHHHHHHhc
Confidence            445566789999999999999987  6776  4  33453  57887 88999984 344554

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.06  E-value=0.2  Score=42.82  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|+|+|.+|..+|..|++. |.+|.++.|..
T Consensus       121 ~vlViGaGg~g~a~a~~L~~~-G~~V~v~~R~~  152 (271)
T 1nyt_A          121 RILLIGAGGASRGVLLPLLSL-DCAVTITNRTV  152 (271)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEECCcHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            599999999999999999998 89999998763

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.04  E-value=0.19  Score=44.36  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      ..|.|||+|..|..+|..|++. |. +|.|+|...
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~-g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALR-ELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCh
Confidence            4699999999999999999997 87 999999864

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.75  E-value=0.22  Score=43.41  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      -|.|||+|..|.+.|..|+.. |.  +|.|+|...
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCH
Confidence            378999999999999999997 88  899999863

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.75  E-value=0.19  Score=44.07  Aligned_cols=30  Identities=13%  Similarity=0.277  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      .+.|||+|..|...|..|+++ |.+|.++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~-g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEEc
Confidence            378999999999999999998 999999998

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.64  E-value=0.14  Score=39.12  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|..|...|..|.+. |.+|.+.++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~-g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP-QYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCH
Confidence            3699999999999999999996 88899998863

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.63  E-value=0.23  Score=43.80  Aligned_cols=33  Identities=36%  Similarity=0.491  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +..+.|||+|..|...|..|+++ |.+|.++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~-G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN-GEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-CCeEEEEeCC
Confidence            46799999999999999999998 9999999875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.57  E-value=0.23  Score=45.98  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||+|..|...|..|+++ |++|+++|+.+
T Consensus        39 kV~VIGaG~MG~~iA~~la~~-G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARV-GISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            599999999999999999997 99999999764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=90.56  E-value=0.23  Score=43.95  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -.+.|||+|..|...|..|++. |.+|.++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~-g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK-GQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            3699999999999999999997 8999999875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.53  E-value=0.27  Score=42.50  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .-.+.|||.|..|...|..|+++ |++|.+.++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW-PGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS-TTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence            45799999999999999999998 999999998764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=90.46  E-value=0.26  Score=43.44  Aligned_cols=33  Identities=18%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      ..|.|||+|..|..+|..|++. |. +|.|+|...
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~-g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK-DLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCH
Confidence            3699999999999999999997 88 999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=90.44  E-value=0.24  Score=45.65  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|.|||.|.+|+++|..|.+. |++|.+.|+..
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~-G~~V~~~D~~~   42 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKL-GAIVTVNDGKP   42 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             EEEEEeeCHHHHHHHHHHHhC-CCEEEEEeCCc
Confidence            699999999999999999998 99999999865

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.41  E-value=0.28  Score=41.74  Aligned_cols=33  Identities=15%  Similarity=0.022  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -.++|||+|..|+-+|..|++. | +|.++++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~-g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDW-G-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGT-S-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhc-C-cEEEEECCCC
Confidence            4799999999999999999998 8 9999998865

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.41  E-value=0.22  Score=45.48  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|||||.|-.|..+|..|.+. |.+|++||+.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCH
Confidence            3699999999999999999997 99999999874

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=90.40  E-value=0.27  Score=46.91  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .++|||+|..|+-+|..|++. |.+|.++|+.+...
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l  223 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRER-GIEVTLVEMANQVM  223 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCccc
Confidence            699999999999999999997 99999999987543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.29  E-value=0.27  Score=44.58  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-.|+|||+|.+|+.+|..|... |.+|+++|+.+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            35799999999999999999887 99999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=90.25  E-value=0.24  Score=45.75  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|.|||+|..|...|..|+++ |.+|++.|+.+.
T Consensus        56 kVaVIGaG~MG~~IA~~la~a-G~~V~l~D~~~e   88 (460)
T 3k6j_A           56 SVAIIGGGTMGKAMAICFGLA-GIETFLVVRNEQ   88 (460)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEEECcHH
Confidence            699999999999999999998 999999998653

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=90.22  E-value=0.19  Score=46.14  Aligned_cols=34  Identities=12%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -|.|||.|.+|+++|..|++. |++|.+.|.....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~-G~~v~~~D~~~~~   40 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMTP   40 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTT-TCCCEEEESSSSC
T ss_pred             EEEEEeecHHHHHHHHHHHhC-CCEEEEEECCCCc
Confidence            489999999999999999997 9999999986543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.19  E-value=0.24  Score=45.44  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+.|||+|..|+..|..|++. |++|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~-G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR-GHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            378999999999999999998 9999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.14  E-value=0.25  Score=45.63  Aligned_cols=32  Identities=25%  Similarity=0.386  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|+..|..|+++ |++|+++++.+
T Consensus         4 kI~VIG~G~vG~~lA~~La~~-G~~V~~~D~~~   35 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAEL-GANVRCIDTDR   35 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CCEEEEEECCH
Confidence            589999999999999999998 99999999863

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=90.06  E-value=0.31  Score=41.90  Aligned_cols=36  Identities=25%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -.++|||+|..|+-+|..|++. |.+|.++++++...
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~-g~~v~~~~~~~~~~  190 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSY-STKVYLIHRRDTFK  190 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh-CCeEEEEEeCCCCC
Confidence            4799999999999999999998 99999999987543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.04  E-value=0.29  Score=45.51  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      -.|.|||+|..|+..|..|++++|+ +|+++++.+.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3699999999999999999996589 9999998765

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=90.01  E-value=0.24  Score=46.92  Aligned_cols=33  Identities=9%  Similarity=0.142  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++|||+|..|+-.|..+++. |.+|+|+++...
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~l-G~~VTii~~~~~  257 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSL-GYDVTVAVRSIV  257 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-TCCEEEEESSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCeEEEeccccc
Confidence            699999999999999999998 999999998643

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=90.01  E-value=0.32  Score=42.41  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|.|||.|..|...|..|++. |++|.+.++.+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKN-GFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4799999999999999999998 99999999865

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=89.98  E-value=0.72  Score=41.43  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      +--|||+|+|.+|..+|..|... |. +|.++|+.+
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~G  226 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRKG  226 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCC
Confidence            46899999999999999999998 77 899999974

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=89.91  E-value=0.33  Score=42.38  Aligned_cols=33  Identities=36%  Similarity=0.531  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccC-CCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVA-HWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|++.+ +.+|.++|+.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4789999999999999999842 68999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.90  E-value=0.33  Score=39.45  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=28.7

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.||| +|..|...|..|++. |.+|.++++.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            378999 999999999999997 89999998753

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.87  E-value=0.3  Score=42.30  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +--|-|||+|..|...|..|+ + |++|++.|+.+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a-G~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S-KHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c-CCEEEEEECCH
Confidence            347899999999999999999 8 99999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=89.85  E-value=0.26  Score=46.30  Aligned_cols=32  Identities=13%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.++++..
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~  243 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSI  243 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred             eEEEECCcHHHHHHHHHHHHc-CCeEEEEeccc
Confidence            599999999999999999998 99999999853

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.65  E-value=0.36  Score=41.29  Aligned_cols=33  Identities=15%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|.+|..+|..|++. |.+|.++.|..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~-G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQ-GLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4699999999999999999998 79999998875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=89.46  E-value=0.39  Score=42.18  Aligned_cols=33  Identities=18%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      ..|.|||+|..|..+|..|+.. |. +|.|+|...
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~-g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK-NLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCH
Confidence            3699999999999999999997 77 899999764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.43  E-value=0.34  Score=44.67  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ...+-|||.|..|+..|..|+++ |++|+++++.+.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~-G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF-GHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            46789999999999999999998 999999998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=89.41  E-value=0.34  Score=41.51  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -.++|||+|..|+-+|..|++. +.+|.++++.+..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~-g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANI-CSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTT-SSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEeCCCC
Confidence            4799999999999999999998 9999999998754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=89.37  E-value=0.25  Score=44.03  Aligned_cols=31  Identities=23%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .|.|||+|..|...|..|+++ |++|.++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-CREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-EEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            699999999999999999997 9999999875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.35  E-value=0.33  Score=41.84  Aligned_cols=30  Identities=23%  Similarity=0.464  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -++|+|+|.+|..+|..|++. | +|.+..|.
T Consensus       130 ~vlV~GaGgiG~aia~~L~~~-G-~V~v~~r~  159 (287)
T 1nvt_A          130 NIVIYGAGGAARAVAFELAKD-N-NIIIANRT  159 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHC-C-CEEEEECC
Confidence            599999999999999999998 8 99999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=89.32  E-value=0.36  Score=40.44  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ...+-|||+|..|...|..|+++ |++|++.++.+
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~-G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADL-GHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            35799999999999999999998 99999999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=89.27  E-value=0.3  Score=43.97  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|+|||+|.+|..+|..|... |.+|+++|+.+
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRL-GAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            5799999999999999999988 99999999875

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=89.21  E-value=0.33  Score=42.59  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|++. |.  +|.++|+.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCCh
Confidence            378999999999999999997 88  999999863

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.18  E-value=0.37  Score=39.52  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|..|...|..|++. |.+|.++++..
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~-g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS-GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3699999999999999999997 89999998763

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=89.16  E-value=0.35  Score=41.53  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+.|||.|..|...|..|++. |++|.+.++.+.
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKA-GCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCeEEEEcCCHH
Confidence            488999999999999999998 999999998753

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=89.10  E-value=2  Score=40.52  Aligned_cols=34  Identities=6%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-.+||||.|..|..+|..|.+. |.+|+++|..+
T Consensus       127 ~~hviI~G~g~~g~~la~~L~~~-~~~vvvid~~~  160 (565)
T 4gx0_A          127 RGHILIFGIDPITRTLIRKLESR-NHLFVVVTDNY  160 (565)
T ss_dssp             CSCEEEESCCHHHHHHHHHTTTT-TCCEEEEESCH
T ss_pred             CCeEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence            45799999999999999999997 99999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=89.06  E-value=0.3  Score=44.17  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=27.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEc
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLE   87 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE   87 (310)
                      .+.|||+|..|...|..|++..|.+|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            589999999999999999983389999998

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.05  E-value=0.21  Score=41.52  Aligned_cols=32  Identities=13%  Similarity=0.105  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|..+|..|.+. |. |+++|+.+
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~-g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGS-EV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTS-EE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhC-Ce-EEEEECCH
Confidence            4699999999999999999997 88 99999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=88.93  E-value=0.34  Score=42.21  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|+++ |  .+|.++++..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~-g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEcCCH
Confidence            488999999999999999998 7  6899999853

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=88.90  E-value=0.26  Score=42.13  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|+|+|.+|..+|..|++. |.+|.+..|..
T Consensus       121 ~vlvlGaGg~g~a~a~~L~~~-G~~v~v~~R~~  152 (272)
T 1p77_A          121 HVLILGAGGATKGVLLPLLQA-QQNIVLANRTF  152 (272)
T ss_dssp             EEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            699999999999999999998 89999998863

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.88  E-value=0.36  Score=44.83  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --++|+|+|..|..+|.+|+.. |.+|++.|+.+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~-GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQA-GARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            3589999999999999999998 99999998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.88  E-value=0.36  Score=43.23  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --|+|+|+|..|..+|..|... |.+|+++++.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM-GAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            4699999999999999999997 99999999764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=88.81  E-value=0.39  Score=41.88  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|..|+-+|..|++. + +|.++++.+
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~-~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV-A-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhh-C-CEEEEECCC
Confidence            4799999999999999999997 7 699999874

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=88.78  E-value=0.35  Score=44.67  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~   92 (310)
                      .|+|||+|..|+-+|..|.+. |. +|.++++.+..
T Consensus       266 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          266 HVVVLGGGDTAMDCVRTAIRQ-GATSVKCLYRRDRK  300 (456)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT-TCSEEEEECSSCST
T ss_pred             EEEEECCChhHHHHHHHHHHc-CCCEEEEEEeCCcc
Confidence            699999999999999999997 76 59999998643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=88.70  E-value=0.38  Score=42.97  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|+|+|+|.+|..+|..|... |.+|.++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4799999999999999999987 88999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=88.64  E-value=0.42  Score=44.16  Aligned_cols=51  Identities=14%  Similarity=0.257  Sum_probs=38.6

Q ss_pred             CCCcEEecCcEEEEEEEcCCCC-eEEEEEEEE--------------CCeEEEEEcCeEEEEeccCCch
Q psy17311        251 RKNLHIAMRAHVTKILVNPATK-KAYGVQFIR--------------HGIKQTVLARREELEVISFRTT  303 (310)
Q Consensus       251 ~~g~~v~~~~~V~~I~~~~~~~-~v~GV~~~~--------------~g~~~~i~A~k~VIlaaG~~s~  303 (310)
                      +.|+++++++.+++|.-++ ++ ++.+|++.+              +|+...+.++ .||.|.|+...
T Consensus       269 ~~gv~~~~~~~~~~i~~~~-~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d-~Vi~a~G~~p~  334 (460)
T 1cjc_A          269 SRAWGLRFFRSPQQVLPSP-DGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG-LVLSSIGYKSR  334 (460)
T ss_dssp             SEEEEEECSEEEEEEEECT-TSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS-EEEECCCEECC
T ss_pred             CceEEEECCCChheEEcCC-CCceEEEEEEEEEEEccccCCCcccCCCceEEEEcC-EEEECCCCCCC
Confidence            4799999999999997652 26 888888763              3444678887 89999996443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=88.62  E-value=0.4  Score=42.00  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -.+.|||+|..|..+|..|+.. |. +|.|+|..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~-g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK-ELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEecc
Confidence            3699999999999999999997 88 99999986

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.60  E-value=0.42  Score=41.43  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .++|||+|.+|..+|..|++. |. +|.+..|..
T Consensus       143 ~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~~  175 (297)
T 2egg_A          143 RILVIGAGGGARGIYFSLLST-AAERIDMANRTV  175 (297)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCSEEEEECSSH
T ss_pred             EEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            699999999999999999997 86 899998763

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.47  E-value=0.39  Score=43.60  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|+|||+|.+|+.+|..|... |.+|+++|+.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            4799999999999999999887 89999999764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=88.40  E-value=0.42  Score=41.39  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||.|..|...|..|++. |++|.+.++.+
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA-GLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            4699999999999999999998 99999998864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=88.34  E-value=0.36  Score=41.40  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+.|||.|..|...|..|++. |++|.+.++.+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~-G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA-GFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH-TCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCHH
Confidence            488999999999999999998 999999998753

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=88.18  E-value=0.41  Score=44.60  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..|+++ |++|++.|+.+
T Consensus         7 kVgVIGaG~MG~~IA~~la~a-G~~V~l~D~~~   38 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASH-GHQVLLYDISA   38 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            589999999999999999998 99999998764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.04  E-value=0.37  Score=44.16  Aligned_cols=33  Identities=15%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -..-|||.|..|+..|..|+++ |++|+++|+.+
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~-G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH-GVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            3678999999999999999998 99999999864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=88.02  E-value=0.49  Score=40.95  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=29.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.||| .|..|.+.|..|++. |++|.++++.+
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~-G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC-CCeEEEEECCc
Confidence            599999 999999999999997 99999998764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.00  E-value=0.35  Score=40.77  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=28.3

Q ss_pred             cEEEECC-C-hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-G-SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G-~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =++|.|+ | ..|..+|.+|+++ |++|+++.+..
T Consensus        24 ~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~   57 (266)
T 3o38_A           24 VVLVTAAAGTGIGSTTARRALLE-GADVVISDYHE   57 (266)
T ss_dssp             EEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCH
Confidence            4899998 7 6999999999998 99999998763

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.91  E-value=0.52  Score=41.65  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~   92 (310)
                      ..-|+|||+|..|+.+|..|+.. |. ++.|+|.....
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a-GVg~ItlvD~D~Ve   70 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTVS   70 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCBCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCEec
Confidence            46899999999999999999997 64 79999987643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=87.86  E-value=0.57  Score=41.10  Aligned_cols=33  Identities=18%  Similarity=0.089  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHH-HHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAV-VASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~-aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+.|||.|.+|++ +|..|.+. |++|.+.|+...
T Consensus         6 ~i~~iGiGg~Gms~~A~~L~~~-G~~V~~~D~~~~   39 (326)
T 3eag_A            6 HIHIIGIGGTFMGGLAAIAKEA-GFEVSGCDAKMY   39 (326)
T ss_dssp             EEEEESCCSHHHHHHHHHHHHT-TCEEEEEESSCC
T ss_pred             EEEEEEECHHHHHHHHHHHHhC-CCEEEEEcCCCC
Confidence            5899999999997 77788887 999999998754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=87.83  E-value=0.32  Score=43.05  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCC-------CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH-------WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g-------~~VlllE~g~~   91 (310)
                      .+.|||+|..|...|..|+++ |       .+|.++++.+.
T Consensus        10 kI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A           10 KVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCB
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChh
Confidence            699999999999999999998 8       89999998653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=87.83  E-value=0.35  Score=43.35  Aligned_cols=33  Identities=6%  Similarity=0.113  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCC-------CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH-------WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g-------~~VlllE~g~~   91 (310)
                      .+.|||+|..|...|..|+++ |       .+|.++++.+.
T Consensus        23 kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChh
Confidence            599999999999999999998 8       89999998654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=87.75  E-value=0.48  Score=40.70  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=29.0

Q ss_pred             ccEEEEC-CChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIG-GGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      --++|+| +|.+|..+|..|++. |.+|.++.|.
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~  152 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRK  152 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECC
Confidence            3589999 999999999999998 8999999875

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=87.75  E-value=0.54  Score=41.01  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -|.|||+|..|..+|..|+.. |. +|.|+|...
T Consensus         4 kI~VIGaG~vG~~~a~~la~~-g~~~v~L~Di~~   36 (309)
T 1ur5_A            4 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCCeEEEEeCCc
Confidence            589999999999999999997 75 899999753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=87.73  E-value=0.47  Score=39.98  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=28.3

Q ss_pred             EEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~   90 (310)
                      +.|||+|..|...|..|++. | .+|.+.++.+
T Consensus         3 i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~r~~   34 (263)
T 1yqg_A            3 VYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRGA   34 (263)
T ss_dssp             EEEECCSHHHHHHHHHHHHH-CSCEEEEECSSH
T ss_pred             EEEECchHHHHHHHHHHHHC-CCCeEEEECCCH
Confidence            78999999999999999998 8 8999998753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.70  E-value=0.57  Score=37.90  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |+|+|+ |..|..++.+|.++ |++|.++.|.+
T Consensus         3 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNR-GHEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCc
Confidence            799995 99999999999998 99999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=87.66  E-value=0.52  Score=42.46  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-.|+|||+|.+|+.+|..|... |.+|++.|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            34799999999999999999887 88999999764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.63  E-value=0.54  Score=40.01  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|.+. |.+|.++++.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999997 89999998753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.54  E-value=0.53  Score=40.55  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      --++|+|+|.+|..+|..|++. |. +|.++.|..
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~-G~~~v~i~~R~~  161 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDT  161 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEECCH
Confidence            4699999999999999999998 87 699998763

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=87.54  E-value=0.51  Score=41.31  Aligned_cols=32  Identities=13%  Similarity=0.197  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -.++|+|+|.+|..+|..|++. |. +|.|+.|.
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~  187 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALD-GVKEISIFNRK  187 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHC-CCCEEEEEECC
Confidence            3699999999999999999997 87 89999886

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=87.51  E-value=0.51  Score=41.30  Aligned_cols=33  Identities=27%  Similarity=0.490  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|.|||.|..|...|..|++. |++|.+.++.+
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~-G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEA-GYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhC-CCeEEEEcCCH
Confidence            4799999999999999999997 99999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.24  E-value=0.51  Score=41.05  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|..|...|..|++. |.+|.++++.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~-g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKM-GHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999997 89999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=87.18  E-value=0.53  Score=42.29  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --|+|||+|.+|..+|..|... |.+|+++++.+
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGM-GATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            4699999999999999999987 89999999753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=87.15  E-value=0.31  Score=40.17  Aligned_cols=33  Identities=24%  Similarity=0.601  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEE-EcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILL-LEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~Vll-lE~g~   90 (310)
                      ..+.|||+|..|...|..|++. |.+|.+ .++.+
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA-QIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCCH
Confidence            4799999999999999999997 999998 77754

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.14  E-value=0.58  Score=39.78  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|+|.|+|..|..++.+|.++ |++|.++.+...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQ-GHEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcc
Confidence            489999999999999999998 999999998753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.12  E-value=0.6  Score=39.60  Aligned_cols=32  Identities=22%  Similarity=0.471  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|+|.|+|..|..++.+|.++ |++|.++.|.+
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQ-GWRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGG-TCEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHC-CCEEEEEEcCh
Confidence            599999999999999999998 99999998864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=87.09  E-value=0.57  Score=40.30  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|..|...|..|++. |++|.++++.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKE-GVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            4699999999999999999997 89999998753

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=87.05  E-value=0.59  Score=40.09  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||.|..|...|..|++. |.+|.+.++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~-g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH-GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT-TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            378999999999999999997 89999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=87.02  E-value=0.63  Score=40.93  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.+.|||+|..|.++|..|+.. +. +|.|+|..+
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~-~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLK-ELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCc
Confidence            4799999999999999999997 77 999999865

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.97  E-value=0.59  Score=38.50  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+ |..|..+|.+|.+. |++|.++.|.+
T Consensus        23 ~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~   55 (236)
T 3e8x_A           23 RVLVVGANGKVARYLLSELKNK-GHEPVAMVRNE   55 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CCeEEEEECCh
Confidence            5999998 99999999999997 99999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.94  E-value=0.58  Score=40.92  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~   90 (310)
                      -.+.|||.|..|...|..|++. | .+|.+.++.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            3599999999999999999998 9 9999999874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=86.86  E-value=0.46  Score=46.62  Aligned_cols=32  Identities=6%  Similarity=0.141  Sum_probs=30.3

Q ss_pred             cEEEEC--CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG--GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG--aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|||  +|..|+-+|..|++. |.+|.|+|+.+
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~-G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc-CCEEEEEeccc
Confidence            799998  999999999999998 99999999987

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.86  E-value=0.65  Score=37.72  Aligned_cols=31  Identities=23%  Similarity=0.460  Sum_probs=28.5

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.|+ |..|..++.+|.+. |++|.++.|.+
T Consensus         3 ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRR-GHEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecc
Confidence            899998 99999999999998 99999998864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=86.81  E-value=0.56  Score=40.10  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|||+|.+|..+|..|.+. |.+|.+.++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~-g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE-GAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            3699999999999999999998 78999998763

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=86.80  E-value=0.55  Score=40.68  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      .+.|||+|..|.++|..|++. +.  +|.|+|..+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~-~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECCh
Confidence            378999999999999999997 77  899999754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.79  E-value=0.69  Score=38.99  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ...|+|||+|..|+.+|..|+.. |. ++.|+|....
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~-Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA-GVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT-TCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc-CCCeEEEEeCCCc
Confidence            46899999999999999999997 75 7899987653

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=86.71  E-value=0.61  Score=40.07  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|++. |.+|.++++.+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~-g~~V~~~~~~~   38 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   38 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             eEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            599999999999999999997 89999998753

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=86.66  E-value=0.64  Score=37.07  Aligned_cols=32  Identities=13%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|+|+ |..|..++.+|.++ |++|.++.+.+
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~   37 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeCh
Confidence            4899998 99999999999998 99999999864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=86.62  E-value=0.52  Score=40.48  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.++|||+|.+|..+|..|++. |. +|.+..|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKI-VRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT-CCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence            4699999999999999999998 87 899998864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=86.53  E-value=0.53  Score=43.26  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ...+-|||.|-.|+.+|..||+. |++|+.+|..
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~-G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALL-GHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC-CCcEEEEECC
Confidence            35899999999999999999998 9999999864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=86.47  E-value=0.62  Score=44.13  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -.+||||.|-.|..+|..|.+. |.+|+++|+.+.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK-PVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-CCCEEEEECChH
Confidence            4799999999999999999997 999999998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=86.42  E-value=0.55  Score=46.05  Aligned_cols=32  Identities=28%  Similarity=0.524  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|-|||+|..|...|..|+++ |++|++.|+.+
T Consensus       314 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  345 (725)
T 2wtb_A          314 KVAIIGGGLMGSGIATALILS-NYPVILKEVNE  345 (725)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             EEEEEcCCHhhHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999998 99999999764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=86.41  E-value=0.65  Score=39.57  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|++. |.  +|.+.++.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCH
Confidence            378999999999999999997 87  899998753

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=86.40  E-value=0.67  Score=40.08  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~~   92 (310)
                      ..-|+|||+|..|+.+|..|+.. | -++.|+|.....
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~Ve   72 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDKVE   72 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBC-
T ss_pred             CCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCccC
Confidence            56899999999999999999998 6 479999977543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=86.39  E-value=0.65  Score=39.94  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.++|+|+|.+|..+|..|.+. |. +|.++.|..
T Consensus       123 k~vlvlGaGGaaraia~~L~~~-G~~~v~v~nRt~  156 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDN-FAKDIYVVTRNP  156 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            4799999999999999999998 86 899998763

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=86.30  E-value=0.65  Score=41.52  Aligned_cols=32  Identities=13%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      --|+|+|.|..|..+|.+|.+. |.+|++.|+.
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~-GakVvv~D~~  205 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTE-GAKLVVTDVN  205 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            3599999999999999999998 9999998853

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=86.21  E-value=0.7  Score=39.51  Aligned_cols=33  Identities=9%  Similarity=0.106  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.++|+|+|.+|..+|..|++. |. +|.++.|..
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~-G~~~v~i~~R~~  154 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQA-GPSELVIANRDM  154 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-CCSEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            4699999999999999999997 84 899998753

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=86.21  E-value=0.66  Score=39.20  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .++|||+|.+|..++..|.+. |. +|.+..|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence            799999999999999999997 77 899998863

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=86.04  E-value=0.63  Score=40.94  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      --+.|||+|..|.++|..|++. |.  +|.|+|..
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~-~~~~~l~l~D~~   39 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQ-GITDELVVIDVN   39 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCceEEEEecc
Confidence            3699999999999999999997 76  89999974

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=86.03  E-value=0.75  Score=39.55  Aligned_cols=33  Identities=24%  Similarity=0.224  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.++|+|+|.+|..+|..|++. |. +|.+..|..
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~  160 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQ-QPASITVTNRTF  160 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-CCSEEEEEESSH
T ss_pred             CEEEEECchHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence            4699999999999999999997 85 899998863

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=86.00  E-value=0.62  Score=43.32  Aligned_cols=32  Identities=13%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhccC-CCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVA-HWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g   89 (310)
                      .+.|||.|..|+..|..|++.+ |++|+++++.
T Consensus        11 kI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            6999999999999999999973 6899999874

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=85.97  E-value=0.45  Score=37.36  Aligned_cols=52  Identities=13%  Similarity=0.005  Sum_probs=35.8

Q ss_pred             hhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCc
Q psy17311        242 KAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       242 ~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      ..++.+.+++.|++++++ +|+++..+  ++. ..|++ +++   ++.++ .||+|+|..+
T Consensus        59 ~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~-~~g---~i~ad-~vI~A~G~~~  110 (180)
T 2ywl_A           59 LRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVET-EEG---VEKAE-RLLLCTHKDP  110 (180)
T ss_dssp             HHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEEC-SSC---EEEEE-EEEECCTTCC
T ss_pred             HHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEE-CCC---EEEEC-EEEECCCCCC
Confidence            344545566789999999 99999876  433 22332 244   57885 8999999765

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=85.96  E-value=0.67  Score=40.58  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      ..|.|||+|..|.++|+.|+.. +.  +|.|+|...
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~-~~~~ev~L~Di~~   42 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALR-QTANELVLIDVFK   42 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCh
Confidence            5799999999999999999997 76  899999764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=85.91  E-value=0.79  Score=37.95  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++|.|+ |..|..+|.+|+++ |++|.++.+...
T Consensus         4 vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~~   36 (255)
T 2dkn_A            4 IAITGSASGIGAALKELLARA-GHTVIGIDRGQA   36 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             EEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCChh
Confidence            788887 99999999999997 999999998653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.88  E-value=0.7  Score=40.36  Aligned_cols=33  Identities=21%  Similarity=0.400  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      -.+.|||.|..|.+.|..|.+. |+  +|.+.++.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCH
Confidence            3699999999999999999997 88  999998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=85.81  E-value=0.75  Score=39.35  Aligned_cols=32  Identities=19%  Similarity=0.502  Sum_probs=29.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+ |..|...|..|++. |.+|.++++.+
T Consensus        13 ~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~   45 (286)
T 3c24_A           13 TVAILGAGGKMGARITRKIHDS-AHHLAAIEIAP   45 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            6999999 99999999999997 89999998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=85.78  E-value=0.69  Score=40.23  Aligned_cols=33  Identities=24%  Similarity=0.430  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      .-|.|||+|..|..+|+.|+.. |.  .|.|+|...
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK-GIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCc
Confidence            5799999999999999999997 88  899999865

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.71  E-value=0.74  Score=39.69  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --+.|||.|..|..+|.+|... |.+|++.++..
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~dr~~  188 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAAL-GAKVKVGARES  188 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            3699999999999999999987 89999999764

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=85.71  E-value=0.69  Score=43.00  Aligned_cols=34  Identities=12%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-+|.|||.|..|...|..|+++ |.+|.+.++.+
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-GYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-TCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            35899999999999999999998 99999998863

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=85.71  E-value=0.81  Score=40.16  Aligned_cols=33  Identities=15%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      --+.|||+|..|.++|..|+.. +. +|.|+|..+
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~-~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIK-QLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCceEEEEeCCh
Confidence            3699999999999999999996 77 999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=85.63  E-value=0.67  Score=40.37  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -.|-|||.|..|...|..|++. |+ +|.+.++.
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~-G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQA-GAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCeEEEEcCC
Confidence            4699999999999999999998 89 99999985

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=85.61  E-value=0.74  Score=42.81  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+|.|||.|..|...|..|+++ |.+|.+.++.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~-G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence            3699999999999999999997 99999999864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=85.58  E-value=0.67  Score=38.95  Aligned_cols=33  Identities=12%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCC----CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH----WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g----~~VlllE~g~~   91 (310)
                      .+.|||+|..|...|..|+++ |    .+|.+.++.+.
T Consensus         6 ~i~iiG~G~mG~~~a~~l~~~-g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            6 KLGFMGLGQMGSALAHGIANA-NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-TSSCGGGEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHC-CCCCCCeEEEEeCCcc
Confidence            699999999999999999997 7    68999998753

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=85.58  E-value=0.73  Score=41.77  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=27.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+.|||.|..|+..|..|++  |.+|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~--G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL--QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC--CCEEEEEECC
Confidence            37899999999999999998  7999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=85.54  E-value=0.76  Score=40.98  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..-.|.|||.|..|...|..|++. |++|.+.++.+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~-G~~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKG-GHECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            345899999999999999999998 99999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=85.51  E-value=0.69  Score=42.97  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      +|.|||.|..|...|..|+++ |.+|.+.++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~-G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            589999999999999999998 9999999885

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=85.48  E-value=0.86  Score=38.62  Aligned_cols=31  Identities=10%  Similarity=-0.021  Sum_probs=28.1

Q ss_pred             EEEECC---ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG---GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa---G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.|+   |..|..+|.+|+++ |++|+++.+..
T Consensus         9 vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~   42 (275)
T 2pd4_A            9 GLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE   42 (275)
T ss_dssp             EEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST
T ss_pred             EEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            889997   68999999999998 99999998865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.45  E-value=0.77  Score=39.70  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --+.|||.|..|..+|..|... |.+|++.++..
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~-G~~V~~~d~~~  190 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAAL-GANVKVGARSS  190 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            3699999999999999999987 89999999753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=85.40  E-value=0.8  Score=42.36  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccC-CCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVA-HWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~-g~~VlllE~g   89 (310)
                      -.+.|||.|..|+..|..|++.+ |.+|+++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            36999999999999999999963 6899999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=85.39  E-value=0.78  Score=40.07  Aligned_cols=32  Identities=16%  Similarity=0.319  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -.++|+|+|.+|..+|..|++. |. +|.|+.|.
T Consensus       149 k~~lVlGAGGaaraia~~L~~~-G~~~v~v~nRt  181 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIE-GIKEIKLFNRK  181 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            4699999999999999999997 86 89999886

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=85.25  E-value=0.54  Score=40.67  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhccC----C-CeEEEEcC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVA----H-WSILLLEA   88 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~----g-~~VlllE~   88 (310)
                      .+.|||+|..|...|..|++.+    | .+|.++++
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            6999999999999999999852    6 89999987

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=85.18  E-value=0.83  Score=42.66  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ...+-|||.|..|...|..|+++ |++|.+.++.+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~-G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH-GFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46899999999999999999998 99999998864

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=85.10  E-value=0.86  Score=37.00  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             EEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.| +|..|..++.+|.++ |++|.++.|.+
T Consensus         3 ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~   34 (219)
T 3dqp_A            3 IFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKV   34 (219)
T ss_dssp             EEEESTTSHHHHHHHHHHTTS-SCEEEEEESSG
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            78999 799999999999998 99999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=85.03  E-value=0.33  Score=40.51  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .+.|||.|..|.+.|..|.++ |++|.++++.
T Consensus         8 kI~IIG~G~~G~sLA~~L~~~-G~~V~~~~~~   38 (232)
T 3dfu_A            8 RVGIFDDGSSTVNMAEKLDSV-GHYVTVLHAP   38 (232)
T ss_dssp             EEEEECCSCCCSCHHHHHHHT-TCEEEECSSG
T ss_pred             EEEEEeeCHHHHHHHHHHHHC-CCEEEEecCH
Confidence            699999999999999999998 9999998863

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=84.95  E-value=0.75  Score=40.51  Aligned_cols=32  Identities=16%  Similarity=0.193  Sum_probs=28.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      --+.|||+|..|.++|+.|+.. |.  .|.|+|..
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~-g~~~ev~L~Di~   55 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMK-DLADEVALVDVM   55 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHH-CCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEECC
Confidence            4699999999999999999997 76  89999974

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=84.94  E-value=1.1  Score=38.83  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||.|..|...|..|++. |++|.+.++.+
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~-G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQ-GKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999997 99999998864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.93  E-value=0.76  Score=42.42  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      --|+|||+|..|...|..|.+. |.+|.|++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~-ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-cCEEEEEcCC
Confidence            3699999999999999999997 9999999974

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=84.82  E-value=0.89  Score=39.80  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             cccEEEECCC-hhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGG-SAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG-~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .-.++|||+| +.|..+|..|... |.+|.++++.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~-gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLAND-GATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHC-CCEEEEEeCc
Confidence            3589999999 6799999999997 8999999775

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=84.81  E-value=0.86  Score=40.15  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      --|.|||+|..|.++|+.|+.. |.  .|.|+|..
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~-~~~~el~L~Di~   53 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMK-DLADELALVDVI   53 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCceEEEEeCC
Confidence            5799999999999999999997 76  89999974

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=84.79  E-value=0.74  Score=38.76  Aligned_cols=29  Identities=24%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      +.|||.|..|...|..|++. |++|.+.++
T Consensus         3 I~iIG~G~mG~~la~~l~~~-g~~V~~~~~   31 (264)
T 1i36_A            3 VGFIGFGEVAQTLASRLRSR-GVEVVTSLE   31 (264)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCEEEECCT
T ss_pred             EEEEechHHHHHHHHHHHHC-CCeEEEeCC
Confidence            78999999999999999997 999999766

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=84.76  E-value=0.77  Score=42.54  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .++|+|+|.+|..+|..|++.++.+|.++.|.
T Consensus        25 ~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           25 NVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             EEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            59999999999999999999767899999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=84.72  E-value=0.88  Score=39.78  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      +.|||+|..|.++|..|+.. +.  .|.|+|..+
T Consensus         3 v~ViGaG~vG~~~a~~l~~~-~~~~el~l~D~~~   35 (314)
T 3nep_X            3 VTVIGAGNVGATVAECVARQ-DVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEECCSHHHHHHHHHHHHH-TCSSEEEEECSST
T ss_pred             EEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCch
Confidence            78999999999999999997 66  899999865

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=84.61  E-value=0.81  Score=40.23  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=28.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      --|.|||+|..|.++|+.|+.. +.  ++.|+|..
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~-~~~~el~l~D~~   43 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQ-GIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCC
Confidence            3699999999999999999997 66  89999974

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=84.58  E-value=0.82  Score=44.91  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --|-|||+|..|.-.|..++.. |.+|+|+|..+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~a-G~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARV-GISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhC-CCchhcccchH
Confidence            3799999999999999999998 99999999764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=84.54  E-value=2  Score=39.44  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC---eEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW---SILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE~g~~~   92 (310)
                      +--|||.|+|.||+.+|..|.+. |.   ++.++|+.+..
T Consensus       219 d~riV~~GAGaAGigia~ll~~~-G~~~~~i~l~D~~Gli  257 (487)
T 3nv9_A          219 ECRMVFIGAGSSNTTCLRLIVTA-GADPKKIVMFDSKGSL  257 (487)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT-TCCGGGEEEEETTEEC
T ss_pred             hcEEEEECCCHHHHHHHHHHHHc-CCCcccEEEEeccccc
Confidence            46899999999999999999887 76   89999987643

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=84.51  E-value=0.88  Score=38.46  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|.+|...|..|.+. |.+|.+.++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~-g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA-GLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            799999999999999999997 78999998763

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=84.45  E-value=1  Score=41.68  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC---eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW---SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE~g~~   91 (310)
                      .-.|+|||+|..|.++|..|+++++.   +|+++++...
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            45799999999999999999998666   7999987643

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=84.40  E-value=1  Score=36.58  Aligned_cols=31  Identities=16%  Similarity=0.256  Sum_probs=27.8

Q ss_pred             EEEEC-CChhHHHHHHHHh-ccCCCeEEEEcCCC
Q psy17311         59 FIVIG-GGSAGAVVASRLS-EVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVG-aG~aG~~aA~~La-e~~g~~VlllE~g~   90 (310)
                      ++|.| +|..|..+|.+|+ +. |++|.++.|.+
T Consensus         8 vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~   40 (221)
T 3r6d_A            8 ITILGAAGQIAQXLTATLLTYT-DMHITLYGRQL   40 (221)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCc
Confidence            89999 5999999999999 66 99999998864

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=84.34  E-value=0.61  Score=43.89  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .++|+|+|.+|..+|..|++. |.+|.++.|.
T Consensus       366 ~vlV~GaGGig~aia~~L~~~-G~~V~i~~R~  396 (523)
T 2o7s_A          366 TVVVIGAGGAGKALAYGAKEK-GAKVVIANRT  396 (523)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-CC-CEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            699999999999999999998 8899999875

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=84.20  E-value=1.1  Score=39.57  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++|||||.-|..+|+.+.+. |++|+++|..+.
T Consensus         4 I~ilGgg~~g~~~~~~Ak~~-G~~vv~vd~~~~   35 (363)
T 4ffl_A            4 ICLVGGKLQGFEAAYLSKKA-GMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEEESCTT
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence            79999999999999988887 999999997654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=84.20  E-value=1.1  Score=41.36  Aligned_cols=47  Identities=13%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             CCcEEecCcEEEEEEEcCCCCeEEEEEEEE---------------CCeEEEEEcCeEEEEeccCCc
Q psy17311        252 KNLHIAMRAHVTKILVNPATKKAYGVQFIR---------------HGIKQTVLARREELEVISFRT  302 (310)
Q Consensus       252 ~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~---------------~g~~~~i~A~k~VIlaaG~~s  302 (310)
                      .|+++++++.+++|.-+   +++.+|++.+               +|+...+.++ .||.|.|+..
T Consensus       265 ~gv~i~~~~~~~~i~~~---~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d-~vi~a~G~~p  326 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK---RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQ-LVVRSVGYRG  326 (456)
T ss_dssp             EEEEEECSEEEEEEECS---SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECS-EEEECSCEEC
T ss_pred             ceEEEEeCCCCeEEecC---CcEeEEEEEEEEecCCCcccccccCCCceEEEEcC-EEEEcccccc
Confidence            68999999999998643   5677777753               3444578887 8899999644

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=84.17  E-value=0.93  Score=40.31  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ..-|+|||+|..|+.+|..|+.. |. ++.|+|....
T Consensus       118 ~~~VlvvG~GglGs~va~~La~a-Gvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATS-GIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcC
Confidence            45799999999999999999998 65 7999997654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=83.98  E-value=1  Score=42.80  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~   92 (310)
                      ...|+|||+|..|+.+|..|+.. |. ++.|+|.....
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~a-GVG~ItLvD~D~Ve  363 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTVS  363 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-TCCEEEEECCSBCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCccc
Confidence            35799999999999999999998 65 79999977543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=83.94  E-value=1.1  Score=38.24  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||+|..|...|..|++  |.+|.++++.+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~--g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR--RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT--TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            48899999999999999988  78999998764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=83.90  E-value=0.95  Score=38.65  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      -.++|||+|.+|..+|..|.+. |. +|.|+.|.
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~-G~~~i~v~nRt  152 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARN  152 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            3699999999999999999998 75 79999876

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=83.86  E-value=0.79  Score=42.01  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=27.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC---eEEEEc
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW---SILLLE   87 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~---~VlllE   87 (310)
                      --++|+|+|.+|..+|..|.+. |.   +|.|++
T Consensus       187 ~rvlvlGAGgAg~aia~~L~~~-G~~~~~I~vvd  219 (439)
T 2dvm_A          187 ITLALFGAGAAGFATLRILTEA-GVKPENVRVVE  219 (439)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCGGGEEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHc-CCCcCeEEEEE
Confidence            4699999999999999999998 86   799999

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=83.75  E-value=0.93  Score=39.63  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCC----CeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAH----WSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g----~~VlllE~g~   90 (310)
                      -.+.|||+|..|...|..|++. |    .+|.+.++.+
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~-G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAA-GVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHT-TSSCGGGEEEECSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCCCcceEEEECCCc
Confidence            4699999999999999999997 8    7999999865

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=83.74  E-value=1  Score=42.91  Aligned_cols=36  Identities=19%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~   92 (310)
                      ..-|+|||+|..|+.+|..|+.. |. ++.|+|.....
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~a-GVG~ItLvD~D~Ve  362 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGTVS  362 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCBCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCCCc
Confidence            46899999999999999999997 64 79999987643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=83.74  E-value=0.95  Score=38.16  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=28.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCe-EEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g   89 (310)
                      -.+.|||+|..|...|..|++. |.+ |.+.++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~   43 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRT   43 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            3699999999999999999998 888 8999875

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=83.71  E-value=0.7  Score=45.26  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|-|||+|..|...|..|+++ |++|++.|+.+
T Consensus       316 kV~VIGaG~MG~~iA~~la~a-G~~V~l~D~~~  347 (715)
T 1wdk_A          316 QAAVLGAGIMGGGIAYQSASK-GTPILMKDINE  347 (715)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEECCChhhHHHHHHHHhC-CCEEEEEECCH
Confidence            599999999999999999998 99999999764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=83.60  E-value=0.98  Score=39.98  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.|||.|..|.+.|..|.+. |.+|.+.++.+
T Consensus        10 kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~   41 (341)
T 3ktd_A           10 PVCILGLGLIGGSLLRDLHAA-NHSVFGYNRSR   41 (341)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            589999999999999999997 99999999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=83.59  E-value=0.88  Score=42.87  Aligned_cols=33  Identities=24%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|||+|..|+-+|..|++. +.+|.++++.+.
T Consensus       188 ~V~VIG~G~sg~e~a~~l~~~-~~~vtv~~r~~~  220 (542)
T 1w4x_A          188 RVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTPH  220 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-BSEEEEEESSCC
T ss_pred             EEEEECCCccHHHHHHHHhhc-CceEEEEEcCCc
Confidence            589999999999999999998 899999999764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=83.58  E-value=1.1  Score=41.10  Aligned_cols=32  Identities=13%  Similarity=0.253  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||.|..|+..|..|++  |.+|+++++.+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~--G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ--NHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT--TSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHc--CCeEEEEecCH
Confidence            379999999999999999997  89999999864

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=83.53  E-value=0.93  Score=38.29  Aligned_cols=31  Identities=19%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             EEEEC---CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIG---GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVG---aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.|   +|..|..+|.+|++. |++|+++.+..
T Consensus        10 vlVTGa~~s~gIG~aia~~l~~~-G~~V~~~~r~~   43 (269)
T 2h7i_A           10 ILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDR   43 (269)
T ss_dssp             EEECCCSSTTSHHHHHHHHHHHT-TCEEEEEECSC
T ss_pred             EEEECCCCCCchHHHHHHHHHHC-CCEEEEEecCh
Confidence            88999   489999999999998 99999998764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=83.45  E-value=1.3  Score=36.88  Aligned_cols=34  Identities=24%  Similarity=0.573  Sum_probs=28.9

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -++|.|+ |..|..+|.+|+++ |++|+++.+....
T Consensus        24 ~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~   58 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSK-SWNTISIDFRENP   58 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCccc
Confidence            3788886 67899999999998 9999999987643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=83.45  E-value=1  Score=37.82  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=26.6

Q ss_pred             EEEECCC---hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGG---SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG---~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||-|++   ..|..+|.+|+++ |.+|++..+..
T Consensus         9 alVTGaa~~~GIG~aiA~~la~~-Ga~Vvi~~r~~   42 (256)
T 4fs3_A            9 YVIMGIANKRSIAFGVAKVLDQL-GAKLVFTYRKE   42 (256)
T ss_dssp             EEEECCCSTTCHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             EEEECCCCCchHHHHHHHHHHHC-CCEEEEEECCH
Confidence            6788863   5899999999998 99999998864

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=83.44  E-value=1.6  Score=37.95  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=29.0

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+ |..|..+|.+|++. |++|.++.+..
T Consensus        22 ~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~   54 (330)
T 2pzm_A           22 RILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFA   54 (330)
T ss_dssp             EEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCC
Confidence            5899997 99999999999998 99999999854

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=83.33  E-value=0.96  Score=38.05  Aligned_cols=31  Identities=13%  Similarity=0.028  Sum_probs=27.7

Q ss_pred             EEEECC---ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG---GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa---G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.|+   |..|..+|.+|+++ |++|+++.+..
T Consensus        12 vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~   45 (265)
T 1qsg_A           12 ILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND   45 (265)
T ss_dssp             EEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESST
T ss_pred             EEEECCCCCCCHHHHHHHHHHHC-CCEEEEEcCcH
Confidence            788887   68999999999998 99999998864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=83.32  E-value=1.1  Score=39.17  Aligned_cols=34  Identities=12%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      ...-|.|||+|..|.++|+.|+.. +.  .+.|+|..
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~~el~L~Di~   39 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVV   39 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcC-CCCCEEEEEeCC
Confidence            346799999999999999999987 65  79999974

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=83.25  E-value=0.94  Score=40.17  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ...|+|||+|..|+.+|..|+.. |. ++.|+|-...
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~-Gvg~itlvD~d~V   71 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILA-GVKGLTMLDHEQV   71 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCCc
Confidence            46899999999999999999998 76 7999986643

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=83.18  E-value=0.95  Score=36.82  Aligned_cols=32  Identities=16%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+ |..|..++.+|.+. |++|.++.|.+
T Consensus         6 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~   38 (227)
T 3dhn_A            6 KIVLIGASGFVGSALLNEALNR-GFEVTAVVRHP   38 (227)
T ss_dssp             EEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCG
T ss_pred             EEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCc
Confidence            5899995 99999999999998 99999999875

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=83.17  E-value=1.5  Score=40.40  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=32.5

Q ss_pred             cEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        254 LHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       254 ~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      .+|+++++|++|..+  ++++. |.+.+++...+++|+ .||+|...
T Consensus       252 ~~i~~~~~V~~i~~~--~~~v~-v~~~~g~~~~~~~ad-~vI~a~p~  294 (489)
T 2jae_A          252 DNIVFGAEVTSMKNV--SEGVT-VEYTAGGSKKSITAD-YAICTIPP  294 (489)
T ss_dssp             GGEETTCEEEEEEEE--TTEEE-EEEEETTEEEEEEES-EEEECSCH
T ss_pred             CeEEECCEEEEEEEc--CCeEE-EEEecCCeEEEEECC-EEEECCCH
Confidence            789999999999988  66655 555555544578897 78888764

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=83.16  E-value=1.2  Score=36.74  Aligned_cols=32  Identities=13%  Similarity=0.127  Sum_probs=27.9

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+ |..|..+|.+|+++ |++|+++.+..
T Consensus         9 ~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~   41 (244)
T 1cyd_A            9 RALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTN   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3788887 89999999999998 99999998753

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=83.11  E-value=0.98  Score=37.95  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=28.2

Q ss_pred             cEEEECC---ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG---GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa---G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+   |..|..+|.+|+++ |++|+++.+..
T Consensus        10 ~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~   44 (261)
T 2wyu_A           10 KALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAE   44 (261)
T ss_dssp             EEEEESCCSSSSHHHHHHHHHHHH-TCEEEEEESCG
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            3899997   68999999999998 99999998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=83.07  E-value=1.2  Score=38.40  Aligned_cols=32  Identities=16%  Similarity=0.056  Sum_probs=28.0

Q ss_pred             cEEEECCC---hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGG---SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG---~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =++|.|++   ..|..+|.+|++. |++|+++.+..
T Consensus        32 ~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~   66 (296)
T 3k31_A           32 KGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSE   66 (296)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            48888985   7999999999998 99999998763

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=83.05  E-value=1.1  Score=38.79  Aligned_cols=29  Identities=21%  Similarity=0.102  Sum_probs=26.2

Q ss_pred             EEEECC---ChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         59 FIVIGG---GSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        59 vIVVGa---G~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      +||.|+   |..|..+|.+|+++ |++|+++.+
T Consensus        12 ~lVTGa~~s~GIG~aia~~la~~-G~~Vv~~~r   43 (315)
T 2o2s_A           12 AFVAGVADSHGYGWAIAKHLASA-GARVALGTW   43 (315)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             EEEeCCCCCCChHHHHHHHHHHC-CCEEEEEec
Confidence            889996   88999999999998 999999864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=83.03  E-value=1  Score=37.08  Aligned_cols=32  Identities=22%  Similarity=0.496  Sum_probs=28.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCC-CeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAH-WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g-~~VlllE~g~   90 (310)
                      -++|.| +|..|..+|.+|+++ | ++|.++.|.+
T Consensus        25 ~vlVtGatG~iG~~l~~~L~~~-G~~~V~~~~R~~   58 (236)
T 3qvo_A           25 NVLILGAGGQIARHVINQLADK-QTIKQTLFARQP   58 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTC-TTEEEEEEESSG
T ss_pred             EEEEEeCCcHHHHHHHHHHHhC-CCceEEEEEcCh
Confidence            589999 699999999999998 8 8999999875

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=82.99  E-value=1.1  Score=41.55  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++-|||.|..|...|..|+++ |++|.+.++.+
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~-G~~V~v~dr~~   37 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   37 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CEEEEEChhHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            4799999999999999999998 99999999865

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=82.93  E-value=0.96  Score=41.26  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      --++|||.|.+|..+|.+|... |.+|++.|+.+
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~-Ga~Viv~D~dp  253 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAM-GSIVYVTEIDP  253 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            4799999999999999999887 99999999754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=82.90  E-value=1.3  Score=38.67  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      -|.|||+ |..|.++|..|++. +  ..|.|+|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~-~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhC-CCCcEEEEEeCCc
Confidence            3799998 99999999999986 7  6899999764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=82.63  E-value=1.2  Score=39.24  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+.|||.|..|.+.|..|.+. |.+|.+.++.+
T Consensus        18 ~I~IIG~G~mG~alA~~L~~~-G~~V~~~~~~~   49 (338)
T 1np3_A           18 KVAIIGYGSQGHAHACNLKDS-GVDVTVGLRSG   49 (338)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEECCTT
T ss_pred             EEEEECchHHHHHHHHHHHHC-cCEEEEEECCh
Confidence            599999999999999999997 89999998764

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=82.60  E-value=1.2  Score=41.10  Aligned_cols=31  Identities=10%  Similarity=0.156  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -++|+|+|..|..+|..|++. |.+|.++++.
T Consensus         5 ~VlViGaG~iG~~ia~~L~~~-G~~V~v~~R~   35 (450)
T 1ff9_A            5 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRT   35 (450)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-cCEEEEEECC
Confidence            489999999999999999996 8999999875

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=82.60  E-value=1.3  Score=36.56  Aligned_cols=32  Identities=13%  Similarity=0.167  Sum_probs=27.8

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.|+ |..|..+|.+|++. |++|.++.+..
T Consensus         9 ~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~   41 (244)
T 3d3w_A            9 RVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQ   41 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            3788887 89999999999998 99999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=82.59  E-value=1.1  Score=41.55  Aligned_cols=32  Identities=16%  Similarity=0.268  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      ..|.|||.|..|...|..|+++ |.+|.+.++.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~-G~~V~v~dr~   37 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESR-GYTVAIYNRT   37 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence            4799999999999999999997 9999999875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=82.55  E-value=1.1  Score=39.12  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      .-|.|||+|..|.+.|+.|+.. +.  +|.|+|...
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~-~~~~ev~l~Di~~   41 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANE   41 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCCEEEEEeCCc
Confidence            4699999999999999999886 54  799999753

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=82.48  E-value=1.3  Score=37.12  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             cEEEECCC-h--hHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGG-S--AGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG-~--aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      =++|.|++ .  .|..+|.+|+++ |++|+++.+.
T Consensus         9 ~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~   42 (266)
T 3oig_A            9 NIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAG   42 (266)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCc
Confidence            37888874 4  899999999998 9999999875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=82.42  E-value=1.2  Score=38.15  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|+|.|+ |..|..++.+|.++ |++|.++.+...
T Consensus         9 ~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~   42 (321)
T 3vps_A            9 RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRV   42 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSS
T ss_pred             eEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCc
Confidence            5899998 99999999999998 999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	5e-45
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	4e-41
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	5e-38
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-36
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	1e-32
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	8e-30
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	6e-27
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	7e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	9e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	3e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	4e-04
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	7e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.001
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.001
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.001
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.001
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.002
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.002
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.002
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.002
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.002
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.003

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  155 bits (391), Expect = 5e-45
 Identities = 23/281 (8%), Positives = 61/281 (21%), Gaps = 33/281 (11%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYK 115
           +YD +++G G  G   A  L   A + + + + G  ++ +         ++  K   ++ 
Sbjct: 4   KYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 62

Query: 116 TEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYD--------HWESLGNP 167
               G+                         + +    N                 +G  
Sbjct: 63  NVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGM 122

Query: 168 GWGYDDVLPYFKKSEDNRNP--------------YLAKNRSLKLSNGLHDVEAGQELGYE 213
              +    P F + +                   Y       +             L   
Sbjct: 123 STHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLN 182

Query: 214 NRDINGEKQTGF----MVAQGTIRRGSRCSTAKAFLR------PVRKRKNLHIAMRAHVT 263
                 + Q  F    + A          S+A                +  ++       
Sbjct: 183 KLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACE 242

Query: 264 KILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTT 304
           +++ N    +   +             + +   + +     
Sbjct: 243 RVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHN 283

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  145 bits (365), Expect = 4e-41
 Identities = 68/272 (25%), Positives = 111/272 (40%), Gaps = 39/272 (14%)

Query: 55  REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP---DENEVTDVPSLAAWLQLSKFD 111
           + YD+I+ GGG  G  VA++L+E     +L++E G    ++  + + P+    +  +  D
Sbjct: 23  KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVD 82

Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWG 170
             Y T P        N    +   GK LGGS+++N   + R ++   D WE   G  GW 
Sbjct: 83  QNYLTVP------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136

Query: 171 YDDVLPYFKKSEDNRNPYLAK-------NRSLKLSNGLHDVE-----------------A 206
           +D++  Y KK+E  R P  A+       N +   +NG                       
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196

Query: 207 GQELG--YENRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTK 264
              LG   +   + G  +   M+         R   A+A+L P  +R NL I     V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256

Query: 265 ILV--NPATKKAYGVQFIRH-GIKQTVLARRE 293
           +L     +  +A GV F  +  +   V A+ E
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHE 288

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  136 bits (343), Expect = 5e-38
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 38/272 (13%)

Query: 55  REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP---DENEVTDVPSLAAWLQLSKFD 111
           R  D+I+ GGG  G   A+RL+E  + S+L++E+G    D   + +  +    +  S  D
Sbjct: 16  RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVD 75

Query: 112 WQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGN-PGWG 170
             Y+T          N        G  LGGS+++N   + R ++   D WE++    GW 
Sbjct: 76  HAYETVELAT-----NNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 130

Query: 171 YDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHD------------------------VEA 206
           +D+V  Y  ++E  R P   +  +    N                            + A
Sbjct: 131 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 190

Query: 207 GQELGY-ENRDINGEKQTGFMVAQGTIRRGSR-CSTAKAFLRPVRKRKNLHIAMRAHVTK 264
            ++ G    +D       G  +   T+         A+ +L P  +R NL +    +V K
Sbjct: 191 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGK 250

Query: 265 ILV--NPATKKAYGVQFIRH-GIKQTVLARRE 293
           +L+  N  T +A GV+F  H G    V A+ E
Sbjct: 251 VLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHE 282

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  132 bits (333), Expect = 1e-36
 Identities = 43/272 (15%), Positives = 72/272 (26%), Gaps = 37/272 (13%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSL-------------- 101
               +VIG G  GAV A RL++ A     ++E G   +       +              
Sbjct: 7   RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 65

Query: 102 -----AAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRF 156
                        F      +                 +G+ +GG S++N  + V   R 
Sbjct: 66  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 125

Query: 157 DYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHD-VEAGQELGYE-- 213
            ++      +    Y+   P         N   A   S +         +  Q  G+   
Sbjct: 126 YFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTA 185

Query: 214 ----NRDINGEKQT--------GFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAH 261
                 D    K+         G            + S  K +L        L I     
Sbjct: 186 FVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHR 245

Query: 262 VTKILVNPATKKAYGVQFIRHGIKQTVLARRE 293
           VTK+         Y V   +   +  V+A + 
Sbjct: 246 VTKVAPAT--GSGYSVTMEQIDEQGNVVATKV 275

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  121 bits (304), Expect = 1e-32
 Identities = 62/266 (23%), Positives = 107/266 (40%), Gaps = 22/266 (8%)

Query: 34  SYYNYDMYDPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN 93
           SY ++  YD  +  ++       YD++++GGG++G  +A+ LSE   + +L+LE G    
Sbjct: 10  SYLSF-AYDATDLELEG-----SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPT 61

Query: 94  EVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRG 153
              +V +   ++   + +   KT          ++      RG+VLGG+S++N  +Y R 
Sbjct: 62  AYPNVLTADGFVYNLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARA 117

Query: 154 NRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYE 213
           N   Y          W  D V   ++  ED    Y   ++S +       +EAG      
Sbjct: 118 NTSIYSAS----GVDWDMDLVNQTYEWVEDTI-VYKPNSQSWQSVTKTAFLEAGVH---P 169

Query: 214 NRDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATK- 272
           N   + + + G  +   T         A   L       NL + + A V KI+ + A   
Sbjct: 170 NHGFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGL 228

Query: 273 KAYGVQFIRHGIKQTVLARREELEVI 298
            A GV +            R + EVI
Sbjct: 229 TATGVIYRDSNGTPHQAFVRSKGEVI 254

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score =  114 bits (285), Expect = 8e-30
 Identities = 42/284 (14%), Positives = 72/284 (25%), Gaps = 50/284 (17%)

Query: 57  YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAA------------- 103
              +VIG G   AV A RL E A    L+LE G   N+     ++               
Sbjct: 3   VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 104 -----------WLQLSKFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVR 152
                      WL +   +               N  + S   G+ +GG S++N  + V 
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGV----LDRVNYDQMSVYVGRGVGGGSLVNGGMAVE 117

Query: 153 GNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL----------- 201
             R  ++            +    YF ++           +  + +              
Sbjct: 118 PKRSYFEEIL---PRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAG 174

Query: 202 ------HDVEAGQELGYENRDIN-GEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNL 254
                   V    + GY  R+      ++             + S  K +L        +
Sbjct: 175 KAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKV 234

Query: 255 HIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVI 298
            I     V  I        A  V+      K           + 
Sbjct: 235 TIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLF 278

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  106 bits (264), Expect = 6e-27
 Identities = 49/256 (19%), Positives = 77/256 (30%), Gaps = 28/256 (10%)

Query: 56  EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLS------- 108
            YD+I++G G  G + A RLSE A   +LLLE G    + T    +A W   S       
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 109 -KFDWQYKTEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNP 167
                   T+        +     +   G ++GG + +N  LY   N  D+         
Sbjct: 61  PGLFESLFTDSNP----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV---GW 113

Query: 168 GWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQEL------GYENRDINGEK 221
              + +  PY  K           +   +           Q L           D    K
Sbjct: 114 PSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYK 173

Query: 222 QTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR 281
              F  +      G R      +L+    R N        V+ ++ N    +  GVQ   
Sbjct: 174 DHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTND 231

Query: 282 HGIKQ----TVLARRE 293
             +       V  +  
Sbjct: 232 PTLGPNGFIPVTPKGR 247

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          EYD IV+G G    +++  +S      +L ++  P
Sbjct: 6  EYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNP 39

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 45 NRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
           R +     + E D +V+G GSAG   A  +S+  +  + ++E   
Sbjct: 22 RRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          +YD IV+G G    +++  LS      +L ++   
Sbjct: 5  DYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQD 38

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          R Y+ +VIGGG  G+ +A  L++  + +  L E+G 
Sbjct: 3  RHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGT 37

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 10/83 (12%), Positives = 21/83 (25%)

Query: 55  REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQY 114
           R YD +VIG GS G       + +    + +++                 + +     + 
Sbjct: 2   RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61

Query: 115 KTEPTGRACLGYNQGRCSWPRGK 137
                             W   +
Sbjct: 62  MVTGANYMDTIRESAGFGWELDR 84

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          H   D +V+G G AG   A   ++ +   ++L+E  P
Sbjct: 14 HDTVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEP 49

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          + YD+I IGGGS G    +R +        L+EA  
Sbjct: 1  KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE 35

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 42 DPENRPIDQQQLHREYDFIVIGGGSAGAVVASRLSEVAH-----WSILLLEAGP 90
          D     ++ ++   E D +++G G AG   A+RL ++A        + L+E   
Sbjct: 18 DKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          +D IV+G GS G     +L++      LL++A  
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT 96
          + +D +VIG GS G   A   + +    + +++         
Sbjct: 2  KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPF 43

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          YD+I++G G  GAV A+ L +  +  +L++E   
Sbjct: 2  YDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRN 34

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
           YD IVIGGG +G + A   +E    ++LLL+ G  
Sbjct: 2  HYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNK 36

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          +++ +D ++IGGG AG V A + ++   ++   +E   
Sbjct: 2  INKSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRG 38

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          YD IVIGGGS G   A R +   +  + L+E   
Sbjct: 2  YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR 34

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
          REYD I IGGG+AG   ++ L        L+++  P 
Sbjct: 41 REYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWPF 76

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          E D ++IGGG  G V A + ++   +    +E   
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRG 36

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          E + +V+G G  G V A R ++     + ++E G 
Sbjct: 3  ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKGN 36

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTD 97
          ++D I+IGGGS G   A   ++     +++L+        T+
Sbjct: 3  DFDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTPTPLGTN 43

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
          +  + I+IG G+AG   A++L++    S+ + + G  
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKK 38

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
           YD++VIGGGS G   A R +E       ++E+  
Sbjct: 3  SYDYLVIGGGSGGLASARRAAE-LGARAAVVESHK 36

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD 91
          +++D IVIG G  G V A + ++       L+E    
Sbjct: 2  QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKG 37

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          +   ++IGGG  G V A R  +      +L+E   
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA 38

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
          EYD +V+GGG  G   A   ++     + ++E   
Sbjct: 6  EYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYK 39

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
               +V+G GSAG   +    + A  +++L++  P
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAP 52

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP 90
            D ++IG G AG   A    + A   ++LLE  P
Sbjct: 23 TTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEP 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.97
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.96
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.9
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.83
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.8
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.78
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.74
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.69
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.69
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.67
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.67
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.63
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.62
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.62
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.62
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.56
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.55
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.41
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.23
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.14
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.02
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.97
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.92
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.9
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.84
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.83
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.81
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.79
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.78
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.76
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.75
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.73
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.73
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.68
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.65
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.64
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.64
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.63
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.61
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.56
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.55
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.55
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.54
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.5
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.44
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.43
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.4
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.4
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.38
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.38
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.37
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.33
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.32
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.31
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.3
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.27
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.2
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.14
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.13
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.05
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.98
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.92
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.92
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.8
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.75
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.74
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.66
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.5
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.41
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.38
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.36
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.34
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.32
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	97.21
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.21
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.2
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.18
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.17
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	96.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.81
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.65
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.51
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.41
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.36
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.24
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.85
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.61
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	95.43
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.12
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.92
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	94.68
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.57
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.57
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.39
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.36
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.18
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.18
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.61
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.51
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.46
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.35
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.08
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.05
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.01
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.17
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.97
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.54
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.47
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.41
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.28
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	91.13
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.96
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.88
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.81
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.8
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	90.7
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.61
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.53
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.24
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.09
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	89.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.45
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	89.37
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.31
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.3
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.14
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.3
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.22
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	88.13
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	88.05
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	87.97
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.95
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.76
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.69
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	87.42
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	87.4
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.36
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.33
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.2
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.13
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.01
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.97
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.88
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.85
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.36
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	86.23
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	86.09
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	85.88
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	85.49
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.29
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.18
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.13
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.13
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	84.2
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.09
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	84.08
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.93
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.65
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	83.46
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	83.25
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.84
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	82.83
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	82.83
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	82.74
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.58
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.51
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	82.4
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.17
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.99
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	81.7
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	81.54
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	81.44
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	81.24
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	81.04
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.89
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	80.83
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	80.82
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	80.59
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.53
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	80.45
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	80.37
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.34
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	80.17

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=2.5e-42  Score=316.30  Aligned_cols=247  Identities=28%  Similarity=0.413  Sum_probs=197.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC---cchhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV---TDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~---~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      .+|||||||||.+||++|.||+|+++++|||||+|+.....   ...|.....+..++++|.|.+.++     ...++.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~-----~~~~r~~   90 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL-----ATNNQTA   90 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCC-----TTTSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCc-----CCCCcee
Confidence            46999999999999999999999866899999999754432   233445555667889999988764     4678889


Q ss_pred             ccCCcccccccccccCeeeecCCccchhhHHhc-CCCCCCcCChHHHHHHhhhcCCCCCC--------CCCCCCCCCC--
Q psy17311        132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESL-GNPGWGYDDVLPYFKKSEDNRNPYLA--------KNRSLKLSNG--  200 (310)
Q Consensus       132 ~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~-g~~gw~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~~~g--  200 (310)
                      .|++|+++||+|.+|+|.|.|+.+.||+.|.+. +.++|+|++++|||++.|.+..+...        +..+| +..+  
T Consensus        91 ~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~-g~~~~~  169 (385)
T d1cf3a1          91 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCH-GVNGTV  169 (385)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGS-CSSSSE
T ss_pred             eecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCccccccccccccccc-CCcccc
Confidence            999999999999999999999999999999876 77899999999999999987654211        11122 1111  


Q ss_pred             ---------------hhHHHHHHHcCCCC-CCCCCCCCccceecccccCC-CcccchhhhhhhcccCCCCcEEecCcEEE
Q psy17311        201 ---------------LHDVEAGQELGYEN-RDINGEKQTGFMVAQGTIRR-GSRCSTAKAFLRPVRKRKNLHIAMRAHVT  263 (310)
Q Consensus       201 ---------------~~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~~~-g~r~s~~~~~l~~~~~~~g~~v~~~~~V~  263 (310)
                                     ..+.++++++|++. .+.++....++..++..... ..+.++...++.+..+++|++|++++.|+
T Consensus       170 ~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t~~~V~  249 (385)
T d1cf3a1         170 HAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVG  249 (385)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEESCEEE
T ss_pred             cccccccccccCHHHHHHHHHHHHcCCCCcCCcccccccccccccccccccccchhhhhhhcCchhcCCcccccCCceEE
Confidence                           15777888999987 67777777776666655443 34455677888888999999999999999


Q ss_pred             EEEEcCCC--CeEEEEEEEE-CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        264 KILVNPAT--KKAYGVQFIR-HGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       264 ~I~~~~~~--~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +|+++.++  .|++||++.+ +|+.++++|+|+|||||| ++||+||.
T Consensus       250 rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl  297 (385)
T d1cf3a1         250 KVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILE  297 (385)
T ss_dssp             EEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             EEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHH
Confidence            99998422  2899999864 888999999999999998 99999975

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=2.9e-42  Score=316.42  Aligned_cols=246  Identities=28%  Similarity=0.435  Sum_probs=197.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCC---cchhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEV---TDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~---~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      ++|||||||||.+||++|.||+|+++++|||||+|+.....   ...|.....+..+.++|.|.++|+      ++++.+
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~------~~~r~~   96 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTN   96 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC------TTSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec------CCCcEe
Confidence            47999999999999999999999855899999999865432   345666677778899999998875      457888


Q ss_pred             ccCCcccccccccccCeeeecCCccchhhHHh-cCCCCCCcCChHHHHHHhhhcCCCCC--------CCCCCCCCCCCh-
Q psy17311        132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWES-LGNPGWGYDDVLPYFKKSEDNRNPYL--------AKNRSLKLSNGL-  201 (310)
Q Consensus       132 ~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~-~g~~gw~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~~~g~-  201 (310)
                      .|++|+++||+|.+|+|+|.|+++.||+.|.+ .|+++|+|++++|||++.|.+..+..        .+..+| +..++ 
T Consensus        97 ~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~-g~~~~~  175 (391)
T d1gpea1          97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCH-GTNGTV  175 (391)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGC-CBSSSE
T ss_pred             eeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCcccccc-CCCCcc
Confidence            99999999999999999999999999999965 58899999999999999998764321        112222 22221 


Q ss_pred             ----------------hHHHHHHHcCCCC-CCCCCCCCccceeccccc-CCCcccchhhhhhhcccCCCCcEEecCcEEE
Q psy17311        202 ----------------HDVEAGQELGYEN-RDINGEKQTGFMVAQGTI-RRGSRCSTAKAFLRPVRKRKNLHIAMRAHVT  263 (310)
Q Consensus       202 ----------------~~~~~~~~~G~~~-~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~  263 (310)
                                      .+.++++++|++. .+.+.....++..++... .++.|.+...+++.+...+.|++|++++.|+
T Consensus       176 ~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~a~V~  255 (391)
T d1gpea1         176 QSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVG  255 (391)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEE
T ss_pred             cccccccccccCHHHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhhhccceee
Confidence                            5777888999987 455655555555544443 3556888888888888899999999999999


Q ss_pred             EEEEcCC--CCeEEEEEEEE-CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        264 KILVNPA--TKKAYGVQFIR-HGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       264 ~I~~~~~--~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +|+++..  +.|++||++.+ ++..++++|+|+|||||| ++||+||.
T Consensus       256 rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl  303 (391)
T d1gpea1         256 KVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILE  303 (391)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHH
T ss_pred             EEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHH
Confidence            9998632  24899999875 677789999999999998 99999975

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=3.7e-39  Score=292.58  Aligned_cols=235  Identities=22%  Similarity=0.263  Sum_probs=181.1

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCc----chhhhHHh-hhc---CCCCCccccccCCcccCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT----DVPSLAAW-LQL---SKFDWQYKTEPTGRACLGYN  127 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~----~~p~~~~~-~~~---~~~~w~~~~~~~~~~~~~~~  127 (310)
                      .|||||||||.+|+++|.||+|+ |.+|||||+|+......    ..|..... ...   ....|.+.+.++.    ...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~-g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   76 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP----FWW   76 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC----TTB
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC-CCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCc----ccC
Confidence            69999999999999999999998 99999999997543211    11211111 111   1223455555555    566


Q ss_pred             CCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCC--CcCChHHHHHHhhhcCCCCCCCCCCCCCCCCh----
Q psy17311        128 QGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGW--GYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGL----  201 (310)
Q Consensus       128 ~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~----  201 (310)
                      ++.+.+++|+++||+|.+|+|+|.|+.+.||+.|.     +|  +|++++|||++.|+......    ++ +..++    
T Consensus        77 ~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~-----gwp~~~~~l~py~~~~e~~~~~~~----~~-~~~g~~~~~  146 (360)
T d1kdga1          77 CKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV-----GWPSSWTNHAPYTSKLSSRLPSTD----HP-STDGQRYLE  146 (360)
T ss_dssp             CTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG-----TCCGGGSCCHHHHHHHHHHSCCBS----CC-STTSCCCSC
T ss_pred             Cccccccceeeecchhccccccccccchhhheecc-----cccccccchhhhhhhhhccccccc----ee-cCCCccccc
Confidence            77889999999999999999999999999999873     45  89999999999998765321    22 22222    


Q ss_pred             ----hHHHHHHHcCCCC---CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeE
Q psy17311        202 ----HDVEAGQELGYEN---RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKA  274 (310)
Q Consensus       202 ----~~~~~~~~~G~~~---~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v  274 (310)
                          .+.+.++..|+..   .+.+.....+++.++.++.+|.|+++..+||.++.++.|++|++++.|++|+++  ++++
T Consensus       147 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d--~~ra  224 (360)
T d1kdga1         147 QSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQI  224 (360)
T ss_dssp             HHHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE--TTEE
T ss_pred             chhHHHHHHHHHhhccCCCcccCCCccccccceeeeeccccccccccchhhhhhhcccccccccCcEEEEEEEe--CCEE
Confidence                3444555666543   334445566788888889999999999999999889999999999999999999  8999


Q ss_pred             EEEEEEE----CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        275 YGVQFIR----HGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       275 ~GV~~~~----~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +||++.+    .++..+++|+|+|||||| ++||+||-
T Consensus       225 ~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl  262 (360)
T d1kdga1         225 LGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF  262 (360)
T ss_dssp             EEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred             EEEEEEecccCcceEEEEEECCEEEEechhHhChHHHH
Confidence            9999975    255678899999999998 99999974

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=5.7e-38  Score=283.70  Aligned_cols=240  Identities=24%  Similarity=0.300  Sum_probs=179.5

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCcc
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRC  131 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  131 (310)
                      +++.+|||||||||.+|+++|.||||+  +||||||+|+.+.....++............|.+.+.++.    .+.++.+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   95 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER----FVSEDGI   95 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEE----EECTTSC
T ss_pred             cccCCccEEEECccHHHHHHHHHhcCC--CCEEEEecCCCCcCccccccchhhhccCcCCCCCCCcccc----ccCCCce
Confidence            455679999999999999999999994  8999999998644333332222222222344544444444    4567789


Q ss_pred             ccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcC
Q psy17311        132 SWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELG  211 (310)
Q Consensus       132 ~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G  211 (310)
                      .|++|+++||+|.+|+|+|.|+.+.||+.|.    .+|+|+++.+||++.|+..........+.     ..+.+++.+.|
T Consensus        96 ~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~~~~~~~~~-----~~~~~a~~~~g  166 (351)
T d1ju2a1          96 DNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYKPNSQSWQ-----SVTKTAFLEAG  166 (351)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCBCCCCCHHH-----HHHHHHHHHTT
T ss_pred             eeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeeccccccccccccccc-----ccccchhhhhc
Confidence            9999999999999999999999999999883    58999999999999987654321111111     14555677888


Q ss_pred             CCC-CCCCCCCCccceecccccCCCcccchhhhhhhcccCCCCcEEecCcEEEEEEEcCC-CCeEEEEEEEE-CCe--EE
Q psy17311        212 YEN-RDINGEKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPA-TKKAYGVQFIR-HGI--KQ  286 (310)
Q Consensus       212 ~~~-~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~-~~~v~GV~~~~-~g~--~~  286 (310)
                      ++. .+++.....++..+..++..+.+.++...|+.+ ++++|++|++++.|++|+++.. +.+++||++.+ ++.  +.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~  245 (351)
T d1ju2a1         167 VHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQA  245 (351)
T ss_dssp             CCCEEEECCBCCSEEEECEESBCTTSBBCCGGGGGGG-SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEE
T ss_pred             cccccccccccccccccccccccCCCcccccchhhcc-chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEE
Confidence            876 455555556666666777777777778888855 6789999999999999999742 35899999986 333  44


Q ss_pred             EEEcCeEEEEecc-CCchhhhh
Q psy17311        287 TVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       287 ~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      .++|+++|||||| ++||+||.
T Consensus       246 ~v~a~~eVILsAGaI~TP~LLl  267 (351)
T d1ju2a1         246 FVRSKGEVIVSAGTIGTPQLLL  267 (351)
T ss_dssp             EEEEEEEEEECCHHHHHHHHHH
T ss_pred             EeecCcEEEEeCccccCHHHHH
Confidence            6888889999998 99999985

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.97  E-value=6e-31  Score=238.68  Aligned_cols=246  Identities=17%  Similarity=0.135  Sum_probs=166.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcchhhhHH-------------------hhhcCCCCCccc
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDVPSLAA-------------------WLQLSKFDWQYK  115 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~p~~~~-------------------~~~~~~~~w~~~  115 (310)
                      ++|||||||||.+|+++|++|+|+ |++|||||+|.........+....                   ......+.|.+.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKS   84 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCCB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCcc
Confidence            579999999999999999999997 999999999964321111100000                   001112344444


Q ss_pred             cccCCcccCCCCCCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCC
Q psy17311        116 TEPTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSL  195 (310)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~  195 (310)
                      ..+............+.+++|+++||+|.+|++.+.|+.+.||+.|...   .+.++++.+||++.|+.......+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~---~~~~~~~~~~y~~~e~~lgv~~~~~~~~  161 (370)
T d3coxa1          85 IDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPS---VDSNEMYNKYFPRANTGLGVNNIDQAWF  161 (370)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTT---SCHHHHHHTHHHHHHHHHTCBCCCHHHH
T ss_pred             cccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhccccc---CCcHHHHHHHHHHHHHhcCCccccCCcc
Confidence            4444444444556778889999999999999999999999999998542   2346778999999998876532211111


Q ss_pred             CCC----CChhHHHHHHHcCCCCC--CCC-----------C-CCCccceecccccCCCcccchhhhhhhcccCCCCcEEe
Q psy17311        196 KLS----NGLHDVEAGQELGYENR--DIN-----------G-EKQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIA  257 (310)
Q Consensus       196 ~~~----~g~~~~~~~~~~G~~~~--~~~-----------~-~~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~  257 (310)
                      ...    ....+.+.+++.|++..  ...           + ..+..+..+...+..+.+.++..+||.++.++.|++|+
T Consensus       162 ~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~~a~~~g~~~i~  241 (370)
T d3coxa1         162 ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTIT  241 (370)
T ss_dssp             HHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHHHHHHTTCEEEE
T ss_pred             cCCCCccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHHHHHHHHhCCCcEEE
Confidence            000    01144556667777541  110           0 11222233334455677888889999888888899999


Q ss_pred             cCcEEEEEEEcCCCCeEEEEEEEE---CC---eEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        258 MRAHVTKILVNPATKKAYGVQFIR---HG---IKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       258 ~~~~V~~I~~~~~~~~v~GV~~~~---~g---~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      ++++|++|+.+  ++++.+|.+..   .+   +..+++|+ .|||||| ++||+||-
T Consensus       242 t~~~V~~I~~~--~~~~~~V~v~~~~~~~~~~~~~~~~A~-~VILaAGai~Tp~LLL  295 (370)
T d3coxa1         242 TLHRVTKVAPA--TGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLV  295 (370)
T ss_dssp             CSEEEEEEEEC--SSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHH
T ss_pred             ecCcEEEEEEc--CCCeEEEEEEEeCCccceeeEEEEECC-EEEEeeCHHHhHHHHH
Confidence            99999999999  66677777653   22   24578895 7999998 99999984

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.96  E-value=2.2e-29  Score=227.95  Aligned_cols=246  Identities=18%  Similarity=0.128  Sum_probs=157.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCcch-hhhHHhh-hcCCCCCccc--cc---------------
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVTDV-PSLAAWL-QLSKFDWQYK--TE---------------  117 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~~~-p~~~~~~-~~~~~~w~~~--~~---------------  117 (310)
                      +||||||||.+|+++|++|+|+ |+||||||+|......... +.+.... ......|...  ..               
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea-G~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNI   81 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC-cCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCccc
Confidence            6999999999999999999997 9999999999653321110 0000000 0111112110  00               


Q ss_pred             -cCCcccCCCCCCccccCCcccccccccccCeeeecCCccchhhHHhcCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCC
Q psy17311        118 -PTGRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLK  196 (310)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~  196 (310)
                       +............+.+++|+++||+|.+|++.+.|+.+.+|+.|..   ..|.++++.+||+++|++..+...+..+.+
T Consensus        82 ~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~  158 (367)
T d1n4wa1          82 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNHIDTKWFE  158 (367)
T ss_dssp             CCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCCCHHHHH
T ss_pred             ccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCCCCCCccc
Confidence             0000111223456778899999999999999999999999999853   233578899999999998765432111000


Q ss_pred             CCC----ChhHHHHHHHcCCCCC--CC-----------CCC-CCccceecccccCCCcccchhhhhhhcccCCCCcEEec
Q psy17311        197 LSN----GLHDVEAGQELGYENR--DI-----------NGE-KQTGFMVAQGTIRRGSRCSTAKAFLRPVRKRKNLHIAM  258 (310)
Q Consensus       197 ~~~----g~~~~~~~~~~G~~~~--~~-----------~~~-~~~g~~~~~~~~~~g~r~s~~~~~l~~~~~~~g~~v~~  258 (310)
                      ...    ...+.+.+...|+...  +.           .+. ....+......+..+.+.+....||.++.++.|++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~  238 (367)
T d1n4wa1         159 DTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQT  238 (367)
T ss_dssp             HCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHHHHTTSEEEEE
T ss_pred             cCCCChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhHHHHhCCCeEEEC
Confidence            000    1134455666776541  10           000 01111111123445668888889998887888899999


Q ss_pred             CcEEEEEEEcCCCCeEEEEEEEE-CC---eEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        259 RAHVTKILVNPATKKAYGVQFIR-HG---IKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       259 ~~~V~~I~~~~~~~~v~GV~~~~-~g---~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      +++|++|+.+++++++++|++.+ ++   +..+++|+ +|||||| ++||+||-
T Consensus       239 ~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak-~VVLaAGai~Tp~LLl  291 (367)
T d1n4wa1         239 LHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLV  291 (367)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecC-EEEEecchhcCHHHHH
Confidence            99999999985455677777664 22   34578885 8999998 99999984

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.90  E-value=3.1e-26  Score=206.88  Aligned_cols=240  Identities=13%  Similarity=0.093  Sum_probs=131.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCCCc--chhhhH-----------HhhhcCCCCCcc-----
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENEVT--DVPSLA-----------AWLQLSKFDWQY-----  114 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~~~--~~p~~~-----------~~~~~~~~~w~~-----  114 (310)
                      |+.+|||||||||++|+++|.+|+++ |+||||||+|+......  ..+...           .........+.+     
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~-G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTL   79 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhC-CCeEEEEecCCCCCCcccccchhhccccccccccccccccccccccccccccc
Confidence            56799999999999999999999997 99999999997654321  111100           000000000000     


Q ss_pred             --cccc-----C--------CcccCCCCCCccccCCcccccccccccCeeeecCCccchhhHHhcCC----CCC--CcCC
Q psy17311        115 --KTEP-----T--------GRACLGYNQGRCSWPRGKVLGGSSVLNYMLYVRGNRFDYDHWESLGN----PGW--GYDD  173 (310)
Q Consensus       115 --~~~~-----~--------~~~~~~~~~~~~~~~~g~~lGGss~~n~~~~~r~~~~d~~~w~~~g~----~gw--~~~~  173 (310)
                        ....     .        .............+..++.+||.+..|.+.+.|+.+.+++.+.....    ..|  .+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~  159 (379)
T d2f5va1          80 VVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTK  159 (379)
T ss_dssp             CCCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhh
Confidence              0000     0        00000001112234456789999999999999999988876533210    112  3344


Q ss_pred             hHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHHcCCCCCCCCCCCCccceecccccCCCcccchhhhh------hhc
Q psy17311        174 VLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQELGYENRDINGEKQTGFMVAQGTIRRGSRCSTAKAF------LRP  247 (310)
Q Consensus       174 ~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~------l~~  247 (310)
                      +.+||...++....         ...+..+.+...........+.. .......   ......+++....+      ...
T Consensus       160 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  226 (379)
T d2f5va1         160 AESYFQTGTDQFKE---------SIRHNLVLNKLAEEYKGQRDFQQ-IPLAATR---RSPTFVEWSSANTVFDLQNRPNT  226 (379)
T ss_dssp             HHHHHTEESCTTTT---------CHHHHHHHHHHHHHTTTSSCCEE-CCEEEEE---EETTEEEECCHHHHCCCCCEEET
T ss_pred             hhhhhhHHHHHHHH---------HHHhcCCCCCcccccccccCccc-ccchhcc---CCCCCCCcCCCCcccchhhcchH
Confidence            44444443332211         00011222222222111111000 0000000   00011111111111      112


Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CCchhhhh
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FRTTTLSR  307 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~s~~ll~  307 (310)
                      .+.+.|++|++++.|++|++++.+++++||++.+  ++++++++|+ +||+|+| +.||+||.
T Consensus       227 ~~~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~-~vilaaGa~~tp~lL~  288 (379)
T d2f5va1         227 DAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLV  288 (379)
T ss_dssp             TEEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEE-EEEECSCHHHHHHHHH
T ss_pred             HhcCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEece-EEEeccCccCCHHHHh
Confidence            3456799999999999999986578999999986  6888889985 8999997 99999974

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.83  E-value=3.2e-20  Score=163.16  Aligned_cols=59  Identities=12%  Similarity=0.067  Sum_probs=45.5

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEecc-CC-chhhhh
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVIS-FR-TTTLSR  307 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~~-s~~ll~  307 (310)
                      ..+.+.|++|+++++|++|+.++ +++|+||.+.+ ++..+.|+|+ .||+|+| |. .+++++
T Consensus       153 ~~a~~~gv~i~~~~~v~~li~~~-~G~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~~~~~  214 (308)
T d1y0pa2         153 DNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNNERVA  214 (308)
T ss_dssp             HHHHHTTCEEESSEEEEEEEECT-TSCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHH
T ss_pred             HHHHhccceEEEeeccchhhhhc-ccccccccccccccceeEeecC-eEEEccCcccccHHHHH
Confidence            34566899999999999999974 68999999986 5667889996 7777774 53 344443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.80  E-value=2.7e-19  Score=158.33  Aligned_cols=61  Identities=16%  Similarity=0.136  Sum_probs=46.0

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEec-cCC-chhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVI-SFR-TTTLSR  307 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaa-G~~-s~~ll~  307 (310)
                      |...+.+.|++|+++++|++|+.+. +++|+||.+.+ ++..+.|+|+ .||+|+ ||. .+++++
T Consensus       158 l~~~a~~~gv~i~~~t~v~~li~d~-~G~V~Gv~~~~~~~~~~~i~Ak-~VIlAtGG~~~n~~~~~  221 (322)
T d1d4ca2         158 LWDNAVKRGTDIRLNSRVVRILEDA-SGKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNERVS  221 (322)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEECCS-SSCCCEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHH
T ss_pred             HHHHHHhcCceEEEeeecccccccc-cccccceEEEeecccEEEEeCC-eEEEcCCCcccCHHHHH
Confidence            3344566799999999999999874 68999999886 5667789996 677777 564 455443

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.78  E-value=7.6e-19  Score=155.17  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=46.8

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE-CCeEEEEEcCeEEEEecc-C-Cchhhh
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR-HGIKQTVLARREELEVIS-F-RTTTLS  306 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~-~g~~~~i~A~k~VIlaaG-~-~s~~ll  306 (310)
                      .|...+++.|++++++++|++|++++ +++|+||.+.+ +++.+.|+|+ .||+|+| | ..++++
T Consensus       153 ~L~~~~~~~g~~i~~~~~v~~l~~~~-~g~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         153 TLRKAAKEQGIDTRLNSRVVKLVVND-DHSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGMNKEMI  216 (317)
T ss_dssp             HHHHHHHHTTCCEECSEEEEEEEECT-TSBEEEEEEEETTTEEEEEEEE-EEEECCCCCTTCHHHH
T ss_pred             HHHHHhhhccceeeeccchhheeecc-cccceeeEeecccceEEEEecc-ceEEeccccccCHHHH
Confidence            34455677899999999999998865 78999999886 6777788985 7777775 5 344443

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.4e-17  Score=144.07  Aligned_cols=178  Identities=15%  Similarity=0.109  Sum_probs=102.8

Q ss_pred             cccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCCCcchhhhHHhhhcCCCCCccccccCCcccCCCCCCccccC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGRACLGYNQGRCSWP  134 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  134 (310)
                      ++||||||+|+||+++|+++++. +|.+|+||||+....+                                        
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g----------------------------------------   44 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS----------------------------------------   44 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS----------------------------------------
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC----------------------------------------
Confidence            69999999999999999999985 4779999999863221                                        


Q ss_pred             Cccccccccc-ccCeeeecCCc-cchhhHHh---cCCCCCCcCChHHHHHHhhhcCCCCCCCCCCCCCCCChhHHHHHHH
Q psy17311        135 RGKVLGGSSV-LNYMLYVRGNR-FDYDHWES---LGNPGWGYDDVLPYFKKSEDNRNPYLAKNRSLKLSNGLHDVEAGQE  209 (310)
Q Consensus       135 ~g~~lGGss~-~n~~~~~r~~~-~d~~~w~~---~g~~gw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~  209 (310)
                             +|. ..+++.....+ ++.+.+.+   .+..+....++...+..                  ..+..++++.+
T Consensus        45 -------~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v~~~~~------------------~~~~~i~~L~~   99 (311)
T d1kf6a2          45 -------HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVH------------------HCPTEMTQLEL   99 (311)
T ss_dssp             -------GGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHHHH------------------HHHHHHHHHHH
T ss_pred             -------cHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHHHHHHH------------------hhhHhHHhhhh
Confidence                   111 11111111122 12221111   11111122222222111                  12256678888


Q ss_pred             cCCCCC-CCCCCCC---ccceecccccCCCc--ccchhhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--
Q psy17311        210 LGYENR-DINGEKQ---TGFMVAQGTIRRGS--RCSTAKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--  281 (310)
Q Consensus       210 ~G~~~~-~~~~~~~---~g~~~~~~~~~~g~--r~s~~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--  281 (310)
                      .|+++. ...+...   .+.......+..+.  ........+....++.+++|+.+++|++|+.+  +++++||...+  
T Consensus       100 ~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d--~g~v~Gvv~~~~~  177 (311)
T d1kf6a2         100 WGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMM  177 (311)
T ss_dssp             TTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEec--CCcceeEEEEEcC
Confidence            999873 2222111   11111111111111  11233445656677789999999999999999  89999998865  


Q ss_pred             CCeEEEEEcCeEEEEec-cCC
Q psy17311        282 HGIKQTVLARREELEVI-SFR  301 (310)
Q Consensus       282 ~g~~~~i~A~k~VIlaa-G~~  301 (310)
                      +|+.+.+.|+ .||||+ |+.
T Consensus       178 ~g~~~~~~Ak-aVILATGG~g  197 (311)
T d1kf6a2         178 EGTLVQIRAN-AVVMATGGAG  197 (311)
T ss_dssp             TTEEEEEECS-CEEECCCCCG
T ss_pred             CCcEEEEECC-EEEEcCCCcc
Confidence            6888889996 566666 564

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.69  E-value=7.3e-17  Score=139.42  Aligned_cols=58  Identities=7%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             hhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        244 FLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       244 ~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      .+...+++.|++++++++|++|..+  ++++ .|.  .++.  +++|+ .||+|+|.|+++|++.+
T Consensus       155 ~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~v-~V~--t~~g--~i~a~-~VViAaG~~s~~l~~~l  212 (281)
T d2gf3a1         155 AYRELAEARGAKVLTHTRVEDFDIS--PDSV-KIE--TANG--SYTAD-KLIVSMGAWNSKLLSKL  212 (281)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEC--SSCE-EEE--ETTE--EEEEE-EEEECCGGGHHHHGGGG
T ss_pred             ccccccccccccccCCcEEEEEEEE--CCEE-EEE--ECCc--EEEcC-EEEECCCCcchhhHHhc
Confidence            3445667789999999999999998  6654 343  3333  57886 89999999999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.69  E-value=4.6e-18  Score=146.52  Aligned_cols=57  Identities=12%  Similarity=0.048  Sum_probs=44.4

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhhc
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRDV  309 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~~  309 (310)
                      |...+++.|++|+++++|++|..+   +++.+|++. +|   +|+|+ .||+|+|.||++|++.+
T Consensus       157 l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~-~g---~i~a~-~vV~AaG~~s~~l~~~~  213 (276)
T d1ryia1         157 YVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTP-SG---DVWAN-HVVVASGVWSGMFFKQL  213 (276)
T ss_dssp             HHHHHHHTTCEEETTCCCCEEECS---SSSEEEEET-TE---EEEEE-EEEECCGGGTHHHHHHT
T ss_pred             HHHHHHHcCCEEecceEEEeEEee---cceEEEecC-Ce---EEEcC-EEEECCCccHHHHHhhc
Confidence            445567789999999999999865   446677653 33   57886 79999999999998754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.67  E-value=1.1e-16  Score=139.83  Aligned_cols=57  Identities=18%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccCCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISFRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~~s~~ll~~  308 (310)
                      +...+++.|++|+++++|++|..+  +++++||++. +|   +|+|+ .||+|+|.||++|++.
T Consensus       154 l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~-~g---~i~a~-~VV~aaG~~s~~l~~~  210 (305)
T d1pj5a2         154 LIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTA-DG---VIPAD-IVVSCAGFWGAKIGAM  210 (305)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEET-TE---EEECS-EEEECCGGGHHHHHHT
T ss_pred             HHhhhhcccccccCCceEEEEEEe--CCEEEEEecc-ce---eEECC-EEEEecchhHHHHHHH
Confidence            334566789999999999999999  8999999753 33   58997 8999999999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.67  E-value=5.2e-16  Score=137.39  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=43.8

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      ..+++.|++|+.+++|++|+.+  ++++.|+.+.+  +|+.+.|+|+ .||+|+| +.
T Consensus       166 ~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak-~VvlATGG~~  220 (336)
T d2bs2a2         166 NECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYG  220 (336)
T ss_dssp             HHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECS-EEEECCCCCG
T ss_pred             HHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecC-eEEEeccccc
Confidence            4456789999999999999999  89999998875  7888899995 7788775 64

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.2e-15  Score=128.22  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=38.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |+++|||||||||++|+++|++|+++ |+||+||||.+..++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~-G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEcCCCCCCc
Confidence            67899999999999999999999998 999999999987664

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=3.1e-16  Score=133.02  Aligned_cols=36  Identities=42%  Similarity=0.655  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +|||||||||++|+++|+.|+++ |.+|+||||++..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~-G~~V~liEk~~~~   37 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKL   37 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence            69999999999999999999998 9999999998743

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.8e-15  Score=132.34  Aligned_cols=56  Identities=13%  Similarity=0.190  Sum_probs=42.5

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCC-----CCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPA-----TKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~-----~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      +....++.+++++.++++++|+.++.     .++|+||...+  +++.+.+.++ .||+|+| +.
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak-~VilAtGG~~  207 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAK-AVVLATGGAS  207 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECS-EEEECCCCCG
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeec-ceEEeeeccc
Confidence            44455778999999999999999731     24899998875  5777777775 7888875 54

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1e-14  Score=129.00  Aligned_cols=55  Identities=13%  Similarity=0.027  Sum_probs=41.4

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc-CC
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS-FR  301 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG-~~  301 (310)
                      |....++.+++++.++.+++++.+. ++++.|+...+  +|+...+.|+ .||+|+| +.
T Consensus       149 L~~~~~~~~v~~~~~~~~~~l~~~~-~~~~~g~~~~~~~~g~~~~~~a~-~vIlAtGG~~  206 (330)
T d1neka2         149 LYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTALCIETGEVVYFKAR-ATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECT-TSCEEEEEEEETTTCCEEEEEES-CEEECCCCCG
T ss_pred             HHHHHHhcCCeEEEEEEEEEeeeec-cccceeeeeEEccCCcEEEEecc-EEEEcCCCcc
Confidence            3344566899999999999998864 67788776654  6888889997 5677774 53

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=1.7e-15  Score=128.94  Aligned_cols=39  Identities=26%  Similarity=0.472  Sum_probs=35.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      |.+.|||||||||++|+++|++|+++ |.+|+||||++..
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~-G~~V~vlEk~~~~   39 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKKI   39 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence            44679999999999999999999998 9999999999753

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.49  E-value=2.7e-13  Score=120.42  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=33.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhc---cCCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSE---VAHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae---~~g~~VlllE~g~~~   92 (310)
                      .++||||||||++|+++|++|++   ..|.+|+||||++..
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            36999999999999999999985   249999999998753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.41  E-value=7.7e-13  Score=113.71  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             hhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc-CCchhhhhh
Q psy17311        245 LRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS-FRTTTLSRD  308 (310)
Q Consensus       245 l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG-~~s~~ll~~  308 (310)
                      +....++.|++|+++++|++|..+  ++++. |.+.++++..++.|+ .||+|++ ..+++|+.+
T Consensus       225 ~~~l~~~~g~~i~~~~~V~~I~~~--~~~~~-v~~~~~~~~~~~~ad-~VV~a~p~~~~~~Ll~~  285 (347)
T d2ivda1         225 IDALAASLGDAAHVGARVEGLARE--DGGWR-LIIEEHGRRAELSVA-QVVLAAPAHATAKLLRP  285 (347)
T ss_dssp             HHHHHHHHGGGEESSEEEEEEECC----CCE-EEEEETTEEEEEECS-EEEECSCHHHHHHHHTT
T ss_pred             HHHHHHHhhcccccCCEEEEEEEe--CCeEE-EEEEcCCeEEEEECC-EEEECCCHHHHHHhccC
Confidence            333445568999999999999887  55554 555667877889997 7888887 567777764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=2e-11  Score=100.98  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .|||||||||+||+.||+.+|+. |.||+|||+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~-G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK-GVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEEec
Confidence            59999999999999999999998 9999999975

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=1e-10  Score=100.22  Aligned_cols=37  Identities=30%  Similarity=0.472  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++||||||||++|+++|++|+++.|++|+|||+.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            4799999999999999999999855999999999864

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.02  E-value=5e-10  Score=96.87  Aligned_cols=37  Identities=32%  Similarity=0.497  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +++||||||||++|+++|.+|.+. |.+|+|+||++..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDV   42 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhC-CCCEEEEEcCCCc
Confidence            579999999999999999999997 9999999998743

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.97  E-value=1.6e-10  Score=100.43  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ..+|+|||||++|+++|++|+++ |++|+|||+.+..++
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~-G~~V~vlE~~~~~GG   67 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG   67 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHH-TCEEEEECSSSSSBT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCCCC
Confidence            35999999999999999999998 999999999876543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.92  E-value=2.8e-10  Score=101.87  Aligned_cols=40  Identities=28%  Similarity=0.478  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhc-----cCCCeEEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSE-----VAHWSILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae-----~~g~~VlllE~g~~~~   93 (310)
                      .++|||||||||+||+++|++||+     ..|.+|+||||+..+.
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            347999999999999999999997     2399999999997654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.90  E-value=3e-10  Score=97.48  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~-G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            47999999999999999999998 99999999975

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.84  E-value=9.3e-10  Score=90.60  Aligned_cols=37  Identities=30%  Similarity=0.498  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ++|||||||||+||+++|.+|++. |+||+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~-G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH-TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccCC
Confidence            579999999999999999999998 9999999997643

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.83  E-value=4.2e-08  Score=85.72  Aligned_cols=60  Identities=8%  Similarity=-0.033  Sum_probs=41.0

Q ss_pred             hhhhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE---CCeEEEEEcCeEEEEecc-CCchh
Q psy17311        241 AKAFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR---HGIKQTVLARREELEVIS-FRTTT  304 (310)
Q Consensus       241 ~~~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~---~g~~~~i~A~k~VIlaaG-~~s~~  304 (310)
                      ...||...++..+..|+++++|++|..+  +++.. |.+.+   +++.....++ .||+|+| +..|.
T Consensus       115 ~~~yl~~~~~~~~~~I~~~t~V~~v~~~--~~~w~-Vt~~~~~~~~~~~~~~~d-~VI~AtG~~s~p~  178 (335)
T d2gv8a1         115 IQEYQRIYAQPLLPFIKLATDVLDIEKK--DGSWV-VTYKGTKAGSPISKDIFD-AVSICNGHYEVPY  178 (335)
T ss_dssp             HHHHHHHHHGGGGGGEECSEEEEEEEEE--TTEEE-EEEEESSTTCCEEEEEES-EEEECCCSSSSBC
T ss_pred             HHHHHHHHHHHhhhcccCceEEEEEEec--CCEEE-EEEEecCCCCeEEEEEee-EEEEcccccccce
Confidence            3456666666677889999999999998  66643 45544   2344556677 8889998 44343

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=8.2e-10  Score=91.42  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      |+++|||||||+|+||+++|.+|++. |.||+|||+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~-G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCc
Confidence            56789999999999999999999998 9999999987643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=1.9e-09  Score=89.51  Aligned_cols=38  Identities=26%  Similarity=0.529  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -+||+||||||++|+++|.+|++. |+||+|||+++...
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~-G~kV~viE~~~~~~   39 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTP   39 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGG-CCCEEEECCCCCCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCC
Confidence            379999999999999999999998 99999999987543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.78  E-value=2.3e-09  Score=88.06  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ++|||||||+|++|+++|.+|++. |.||+|||+.+...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~-G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCC
Confidence            579999999999999999999998 99999999976543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=1.1e-08  Score=86.43  Aligned_cols=34  Identities=26%  Similarity=0.463  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      +||+|||||++|+++|+.|++. |. +|+|+||.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA-GIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCCCC
Confidence            6999999999999999999998 85 9999999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.75  E-value=2.1e-09  Score=89.08  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      .+||+||||+|++|+++|.+|++. |++|+|||+.+...
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~-G~~V~viE~~~~~G   42 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLG   42 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSCSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeccCCCC
Confidence            579999999999999999999998 99999999986543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3e-09  Score=87.16  Aligned_cols=35  Identities=37%  Similarity=0.598  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||||++|+++|.+|++. |+||+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~-G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccC
Confidence            379999999999999999999998 99999999974

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.4e-09  Score=91.55  Aligned_cols=37  Identities=32%  Similarity=0.616  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      |||||||||++||++|++|++. |++|+|+|+.+..++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~-g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG-TCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhC-CCcEEEEECCCCccc
Confidence            8999999999999999999998 999999999877665

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.68  E-value=5.6e-09  Score=85.60  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +||+||||||++|+++|.+|++. |+||+|||++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~-G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-CCEEEEEecCCC
Confidence            79999999999999999999997 999999999863

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.65  E-value=1.1e-08  Score=85.38  Aligned_cols=39  Identities=26%  Similarity=0.400  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..+.+|||||||++|+++|++|+++ |.+|+||||.....
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~-G~~V~vier~~~~~   42 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPED   42 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSCTTC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHC-CCCEEEEeCCCCCC
Confidence            3466999999999999999999998 99999999976433

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.4e-09  Score=84.58  Aligned_cols=35  Identities=37%  Similarity=0.594  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +||+||||||++|+++|.+|++. |++|+|||++..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~-G~kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC-CCEEEEEeccCC
Confidence            69999999999999999999998 999999999753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=9.8e-09  Score=88.71  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=35.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...+|||||||++||+||++|+++ |++|+|||+.+..++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~-G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT-TCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCCCCcc
Confidence            457899999999999999999998 999999999876654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.1e-09  Score=89.70  Aligned_cols=36  Identities=31%  Similarity=0.525  Sum_probs=33.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ||||||||++|+++|++|+++ |++|+||||.+..++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~-G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT-TCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcc
Confidence            899999999999999999998 999999999876543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.61  E-value=1.8e-07  Score=68.79  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~-G~~Vtlve~~~   55 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANF-GTKVTILEGAG   55 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             eEEEECCCccceeeeeeeccc-ccEEEEEEecc
Confidence            799999999999999999998 99999999986

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.61  E-value=1.2e-08  Score=84.97  Aligned_cols=37  Identities=38%  Similarity=0.496  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~~~   94 (310)
                      .||||||||++|+++|++|+++ |. +|+||||.+..++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~-G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA-GITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT-TCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHhC-CCCcEEEEECCCCCCc
Confidence            3899999999999999999998 85 6999999876543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.2e-08  Score=81.05  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .|||||||||++|+.+|.+|++. |.+|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~-G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK-GIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT-TCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc-CCeEEEEEEe
Confidence            49999999999999999999998 9999999974

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.59  E-value=2.7e-07  Score=68.14  Aligned_cols=49  Identities=12%  Similarity=0.085  Sum_probs=40.3

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.|++++++++|++|..++ ++++..+.....+....+.++ .||+|.|
T Consensus        73 l~~~gI~v~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          73 MKEQGMEIISGSNVTRIEEDA-NGRVQAVVAMTPNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             HHHTTCEEESSCEEEEEEECT-TSBEEEEEEEETTEEEEEECS-CEEECCC
T ss_pred             hhccccEEEcCCEEEEEEecC-CceEEEEEEEeCCCCEEEEcC-EEEEEEC
Confidence            455799999999999999875 677888877776767789998 8888876

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.56  E-value=2.6e-07  Score=68.16  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..||-.|..|++. |.+|.++|+.+
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~~~~   55 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARL-GAEVTVLEAMD   55 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             eEEEECCChHHHHHHHHHHHc-CCceEEEEeec
Confidence            699999999999999999998 99999999886

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=1.9e-08  Score=82.55  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+||+||||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~-G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence            479999999999999999999998 99999999975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.55  E-value=1.2e-07  Score=71.40  Aligned_cols=47  Identities=15%  Similarity=0.147  Sum_probs=37.0

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.|+++++++.|++|...++++++..|.+. +|+  ++.++ .||+|.|
T Consensus        87 ~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~-~G~--~i~~D-~vi~a~G  133 (133)
T d1q1ra2          87 HREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE-DGT--RLPAD-LVIAGIG  133 (133)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTTCCEEEEEET-TSC--EEECS-EEEECCC
T ss_pred             ccccccEEEeCCeEEEEEEeCCCceEEEEECC-CCC--EEECC-EEEEeeC
Confidence            45679999999999999887557788888765 454  57887 8888876

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=2.3e-08  Score=84.31  Aligned_cols=33  Identities=42%  Similarity=0.685  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ||+||||||++|+++|.+|++. |+||+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~-G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence            9999999999999999999998 99999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.50  E-value=4e-08  Score=83.47  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=32.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .|||||||++|++||++|+++ |++|+||||.+..++
T Consensus         3 kV~IIGaG~aGL~aA~~La~~-G~~V~vlE~~~~~GG   38 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-SCEEEEECSSSSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCEEEEeCCCCCcC
Confidence            499999999999999999998 999999999876554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.44  E-value=5.2e-08  Score=85.09  Aligned_cols=39  Identities=23%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhc----cCCCeEEEEcCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSE----VAHWSILLLEAGPDEN   93 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae----~~g~~VlllE~g~~~~   93 (310)
                      ..|||||||||++|+++|..|++    ..|++|+||||.+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            46999999999999999999973    2499999999986544

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.43  E-value=7.8e-08  Score=79.26  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ..||+||||+|+||+++|.+|++....+|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            479999999999999999999997345799999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=2e-07  Score=73.74  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ....+|+|||||+||+++|..|+++ |++|+|+|+.+...+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~-G~~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAAR-GHQVTLFDAHSEIGG   80 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSCT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhh-ccceEEEeccCccCc
Confidence            3457999999999999999999998 999999999876553

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.6e-06  Score=64.07  Aligned_cols=32  Identities=28%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.+
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~l-G~~Vtii~~~~   56 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRL-GSKVTVVEFQP   56 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             eEEEECCCchHHHHHHHHHhh-CcceeEEEecc
Confidence            699999999999999999998 99999999876

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.38  E-value=8.1e-08  Score=79.65  Aligned_cols=36  Identities=28%  Similarity=0.540  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCC-CeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAH-WSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g-~~VlllE~g~~   91 (310)
                      .+||+||||+|+||+++|.++++. | .+|+|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~-g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEEecc
Confidence            479999999999999999999997 6 56999998764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.38  E-value=1.5e-07  Score=79.27  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      +.+||+||||+|++|+.+|..|++. |.+|+|||+.+...
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~-G~kv~vve~~~~lG   78 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFLG   78 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHT-TCCEEEEESSSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCccc
Confidence            4589999999999999999999998 99999999986543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.37  E-value=4.1e-07  Score=67.47  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++|||+|..|+-.|..+++. |.+|.|+|+++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~-G~~Vtvi~~~~~   59 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRI-GSEVTVVEFASE   59 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHH-TCEEEEECSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhc-CCeEEEEEEccc
Confidence            699999999999999999998 999999999863

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.36  E-value=1.4e-07  Score=81.78  Aligned_cols=36  Identities=19%  Similarity=0.461  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      .|+|||||++||++|++|++. |++|+|+||.+..++
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~-G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGG   39 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEEESSSSSSG
T ss_pred             EEEEECCcHHHHHHHHHHHhC-CCCEEEEECCCCCcC
Confidence            589999999999999999998 999999999987665

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.3e-07  Score=75.49  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ..||+|||+|++|+.+|..|++. |.+|+|||+...
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~-g~~v~iie~~~~   39 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARA-NLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT-TCCCEEECCSST
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc-CCceEEEEeecc
Confidence            57999999999999999999998 999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=8.2e-07  Score=65.05  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~-G~~Vtlve~~~   54 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGL-GAKTHLFEMFD   54 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEECCChhhHHHHHHhhcc-ccEEEEEeecc
Confidence            599999999999999999998 99999999986

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=2.5e-07  Score=79.90  Aligned_cols=40  Identities=20%  Similarity=0.361  Sum_probs=35.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhc-cCCCeEEEEcCCCCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSE-VAHWSILLLEAGPDENE   94 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae-~~g~~VlllE~g~~~~~   94 (310)
                      .++||+|||+|++|+++|++|++ ++|++|+|+|+.+..++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            46899999999999999999996 35899999999876543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.30  E-value=1.6e-07  Score=75.29  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .+||+|||||++|+.+|..|++. |.+|+|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~-g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARA-ELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-TCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-CCcEEEEEeecc
Confidence            58999999999999999999998 999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.27  E-value=3.1e-07  Score=76.63  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .-.|+|||||++|+++|..|+++ |++|+||||.+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~-G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDA-GVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            34799999999999999999998 999999999754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.20  E-value=7.9e-07  Score=73.31  Aligned_cols=40  Identities=18%  Similarity=0.370  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         54 HREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        54 ~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      ...-+|+|||||++|+++|.+|++. |++|+|+|+.+...+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~-G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMES-GYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSSSTTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHh-ccceeeEeeccccCC
Confidence            3567999999999999999999998 999999999886554

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.14  E-value=2.9e-06  Score=62.92  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+=+|..+++. |.+|.++|+++
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~-G~~Vtive~~~   59 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTL-GSRLDVVEMMD   59 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcC-CCEEEEEEeec
Confidence            699999999999999999998 99999999986

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.13  E-value=9.5e-07  Score=70.33  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCe-EEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g~~~~~   94 (310)
                      -|+|||||++|+.+|..|++. |.+ |+|+||.+...+
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~-G~~~V~v~E~~~~~gg   42 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARL-GYSDITIFEKQEYVGG   42 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSSCST
T ss_pred             EEEEECChHHHHHHHHHHHHC-CCCeEEEEEecCcccc
Confidence            699999999999999999998 884 999999986553

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.1e-06  Score=60.67  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~-G~~Vtlv~~~~   55 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSAL-GSKTSLMIRHD   55 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcC-CcEEEEEeecc
Confidence            699999999999999999998 99999999986

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=1e-06  Score=72.35  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCC-------CeEEEEcCCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAH-------WSILLLEAGPDENE   94 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g-------~~VlllE~g~~~~~   94 (310)
                      +.|.|||||+||++||++|+++ |       .+|.|+||.+.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSSCST
T ss_pred             cEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCCCCC
Confidence            6899999999999999999997 6       58999999987665

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.02  E-value=9e-06  Score=59.30  Aligned_cols=45  Identities=13%  Similarity=0.136  Sum_probs=32.9

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.|+++++++.|++|..+  ++.+..|.+. +|+  .+.++ .||+|+|
T Consensus        72 l~~~GI~v~~~~~v~~i~~~--~~g~~~v~~~-~g~--~i~~D-~Vi~a~G  116 (117)
T d1feca2          72 LRANGINVRTHENPAKVTKN--ADGTRHVVFE-SGA--EADYD-VVMLAIG  116 (117)
T ss_dssp             HHHTTEEEEETCCEEEEEEC--TTSCEEEEET-TSC--EEEES-EEEECSC
T ss_pred             HhhCcEEEEcCCEEEEEEEC--CCCEEEEEEC-CCC--EEEcC-EEEEecC
Confidence            45679999999999999876  3334455554 554  56787 7888877

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.7e-05  Score=59.51  Aligned_cols=46  Identities=15%  Similarity=0.236  Sum_probs=34.2

Q ss_pred             ccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        248 VRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       248 ~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      ..++.|+++++++.|++|..+  ++++. |.+. +|+  .+.++ .||.|+|.
T Consensus        92 ~l~~~GV~~~~~~~V~~i~~~--~~~~~-v~l~-~G~--~i~aD-~Vi~A~Gv  137 (137)
T d1m6ia2          92 KVRREGVKVMPNAIVQSVGVS--SGKLL-IKLK-DGR--KVETD-HIVAAVGL  137 (137)
T ss_dssp             HHHTTTCEEECSCCEEEEEEE--TTEEE-EEET-TSC--EEEES-EEEECCCE
T ss_pred             HHHhCCcEEEeCCEEEEEEec--CCEEE-EEEC-CCC--EEECC-EEEEeecC
Confidence            346689999999999999887  55543 4443 554  57887 88888883

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.92  E-value=3.9e-06  Score=68.66  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPDENE   94 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~~~~   94 (310)
                      .|+|||||+||++||.+|+++ .|.+|+|+|+.+.+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            699999999999999999764 3679999999987653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=2.4e-05  Score=57.48  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .++|||+|..|+-.|..|++. |.+|.||++.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhc-CCeEEEEEec
Confidence            699999999999999999998 9999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.80  E-value=1.2e-06  Score=72.06  Aligned_cols=30  Identities=30%  Similarity=0.282  Sum_probs=27.7

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      |+|||||++|+++|++|+++ |.+|+++|+.
T Consensus         3 V~VIGaGi~GlstA~~L~~~-G~~v~v~e~~   32 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHER-YHSVLQPLDV   32 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHH-HTTTSSSCEE
T ss_pred             EEEECchHHHHHHHHHHHHC-CCCceEEeee
Confidence            89999999999999999998 9988888874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.75  E-value=4.7e-05  Score=55.32  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhcc--CCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEV--AHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~--~g~~VlllE~g~   90 (310)
                      .++|||||..|+-+|..|++.  .+.+|.|+|+++
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            699999999999999766553  156899999876

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=8.2e-06  Score=66.98  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHHhcc--CCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEV--AHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~--~g~~VlllE~g~   90 (310)
                      .+|||||+|++|+++|.++++.  .+.+|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            3799999999999999998874  246899999865

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.66  E-value=0.00011  Score=58.21  Aligned_cols=33  Identities=24%  Similarity=0.300  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      |+|||||.+|+.+|..|.+. ++.+|+++|+++.
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~   36 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence            89999999999999999884 3568999998863

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.001  Score=48.68  Aligned_cols=47  Identities=19%  Similarity=0.246  Sum_probs=39.4

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEEecc
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELEVIS  299 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIlaaG  299 (310)
                      +.+|++++++++|++|.-+  ++++.+|++.+  +|+..++.++ .|.++-|
T Consensus        77 ~~~~I~v~~~~~v~~i~G~--~~~v~~v~l~~~~tge~~~l~vd-gvFv~IG  125 (126)
T d1fl2a2          77 SLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELA-GIFVQIG  125 (126)
T ss_dssp             TCTTEEEESSEEEEEEEES--SSSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             cccceeEEcCcceEEEEcc--ccceeeEEEEECCCCCEEEEECC-EEEEEeC
Confidence            4478999999999999887  67899999986  5778889987 7777655

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.41  E-value=5.8e-05  Score=55.25  Aligned_cols=34  Identities=32%  Similarity=0.539  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -+++|||||..|+-+|..|++. |.+|.|+|+++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-GYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-TCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-cceEEEEecccc
Confidence            3799999999999999999998 999999999864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.38  E-value=8.6e-05  Score=53.68  Aligned_cols=34  Identities=21%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.+..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~-g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKL-GAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhc-ccceEEEeeeccc
Confidence            699999999999999999998 9999999998753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.36  E-value=9.3e-05  Score=54.06  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -.++|||||..|+-+|..|++. |.+|.|+|+++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~   64 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA-GVHVSLVETQPR   64 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             CeEEEECcchhHHHHHHHhhcc-cceEEEEeeccc
Confidence            4799999999999999999997 999999999875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.34  E-value=9.7e-05  Score=54.12  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+.+.
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~-g~~Vtlie~~~~   64 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKA-GKKVTVIDILDR   64 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             EEEEECChHHHHHHHHHhhcc-ceEEEEEEecCc
Confidence            799999999999999999998 999999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.32  E-value=0.00013  Score=52.89  Aligned_cols=34  Identities=9%  Similarity=0.200  Sum_probs=31.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      .++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~-g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRL-GIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhc-cccceeeehhccc
Confidence            599999999999999999997 9999999998743

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.00016  Score=65.12  Aligned_cols=42  Identities=24%  Similarity=0.376  Sum_probs=38.6

Q ss_pred             cCCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCCC
Q psy17311         52 QLHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDENE   94 (310)
Q Consensus        52 ~~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~~   94 (310)
                      +++++|||||+|.|..=+.+|..|++. |+|||-||+.+..++
T Consensus         2 ~lP~e~DVII~GTGL~ESILAaAlSr~-GkkVLHiD~N~yYGg   43 (491)
T d1vg0a1           2 NLPSDFDVIVIGTGLPESIIAAACSRS-GQRVLHVDSRSYYGG   43 (491)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHT-TCCEEEECSSSSSCG
T ss_pred             CCCCccCEEEECCChHHHHHHHHHHhc-CCEEEEecCCCcCCC
Confidence            356799999999999999999999998 999999999988775

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.21  E-value=0.00013  Score=56.31  Aligned_cols=33  Identities=30%  Similarity=0.592  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~~   91 (310)
                      .|||||||.+|+.+|.+|.+. +  .+|+|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~-~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLA-DPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-CTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHc-CCCCcEEEEECCCc
Confidence            589999999999999999996 4  58999998764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00013  Score=58.77  Aligned_cols=37  Identities=24%  Similarity=0.506  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhcc-CCCeEEEEcCCCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEV-AHWSILLLEAGPD   91 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~-~g~~VlllE~g~~   91 (310)
                      .+++|||||||.+|+.+|..|.+. +..+|+||++.+.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            579999999999999999999875 2347999988654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.18  E-value=0.00017  Score=56.01  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ||||||||.+|+-+|..|++. |.+|.+++..+.+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~~   39 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATV   39 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCCS
T ss_pred             CEEEECCcHHHHHHHHHHHHc-CCceEEEEecCccc
Confidence            899999999999999999998 88888888776543

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.0043  Score=45.36  Aligned_cols=47  Identities=6%  Similarity=0.016  Sum_probs=36.8

Q ss_pred             cCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--CCeEEEEEcCeEEEE
Q psy17311        249 RKRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--HGIKQTVLARREELE  296 (310)
Q Consensus       249 ~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--~g~~~~i~A~k~VIl  296 (310)
                      .+.+|+++++++++++|.-+...+.+.+|++.+  +++..++.++ .|.+
T Consensus        80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~d-GvFV  128 (130)
T d1vdca2          80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFF  128 (130)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEE
T ss_pred             ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECC-EEEE
Confidence            456799999999999999873235689999886  5777788887 5554

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.85  E-value=0.00057  Score=52.12  Aligned_cols=33  Identities=21%  Similarity=0.572  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      -|||||+|.+|+-+|..|++  +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEeccccc
Confidence            38999999999999999976  5799999987643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.81  E-value=0.0005  Score=52.94  Aligned_cols=32  Identities=9%  Similarity=0.127  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|+|||+|..|..+|.+|+++ |++|.|+||..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~   35 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTL   35 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCh
Confidence            489999999999999999998 99999999874

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.65  E-value=0.00056  Score=53.17  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      ..|||||+|.+|+-+|..|.+. |.+|.+++.++...
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~~~   39 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAE   39 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCS
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCceEEEEEecccc
Confidence            4699999999999999999998 88877777665433

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.015  Score=42.04  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+|+|||+|-..+=.|..|++- ..+|.||-|++
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~   60 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRD   60 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT-SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhc-CCcEEEEeecc
Confidence            4999999999999999999997 88999998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.0015  Score=49.67  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      |.|||+|..|+..|.+|++. |.+|.++.|.+.
T Consensus         3 I~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~   34 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHHC-CCceEEEEcCHH
Confidence            78999999999999999997 999999999763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.36  E-value=0.0012  Score=51.03  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+.|||+|..|+.+|..|+++ |++|.++++.+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~-G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALK-GQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            378999999999999999998 99999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.002  Score=44.21  Aligned_cols=33  Identities=12%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      .|+|+|.|..|.++|..|.+. |.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~-g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLAR-GVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHC-CCEEEEeeCCcC
Confidence            589999999999999999998 999999998654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.24  E-value=0.0017  Score=47.68  Aligned_cols=31  Identities=32%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |||+|+|..|..+|.+|.+. |++|+++|+.+
T Consensus         3 IvI~G~G~~G~~la~~L~~~-g~~v~vid~d~   33 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEK-GHDIVLIDIDK   33 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHC-CCCcceecCCh
Confidence            79999999999999999997 99999999865

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.85  E-value=0.003  Score=46.22  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|||||.|-.|..+|.+|.+. |.+|+++|+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~-g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM-GHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCeEEEecCcH
Confidence            489999999999999999998 99999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0051  Score=48.18  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..++.+ |++|.++|+.+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAAT-GHTVVLVDQTE   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence            589999999999999999998 99999999765

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.43  E-value=0.008  Score=45.06  Aligned_cols=34  Identities=6%  Similarity=0.070  Sum_probs=29.9

Q ss_pred             ccEEEE--CCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVI--GGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVV--GaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -.+|||  |+|..|+.+|-.|++. |.+|.|+|+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~   75 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHL   75 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             CceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCc
Confidence            356665  9999999999999998 999999999764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.12  E-value=0.0069  Score=47.13  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|.|||+|..|...|..++.+ |++|.++|..+
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~-G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK-GTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence            489999999999999999998 99999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.92  E-value=0.0084  Score=46.75  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.+.|||+|.-|.+.|..|+++ |.+|.|..+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKK-CREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-EEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-CCeEEEEEecH
Confidence            4799999999999999999998 99999998753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.68  E-value=0.52  Score=37.01  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=37.0

Q ss_pred             CCCCcEEecCcEEEEEEEcCCCCeEEEEEEEE--------------CCeEEEEEcCeEEEEeccC
Q psy17311        250 KRKNLHIAMRAHVTKILVNPATKKAYGVQFIR--------------HGIKQTVLARREELEVISF  300 (310)
Q Consensus       250 ~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~--------------~g~~~~i~A~k~VIlaaG~  300 (310)
                      ...++.+.+...-.+|+.++.++++.+|++.+              .|+...+.|+ -||.|-||
T Consensus       162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipad-lVi~AiGf  225 (225)
T d1cjca1         162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG-LVLSSIGY  225 (225)
T ss_dssp             CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS-EEEECCCE
T ss_pred             cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECC-EEEECCCC
Confidence            44678888888888888875446888887753              2556778887 88888785

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.57  E-value=0.016  Score=45.52  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.|||.|-.|+++|..||+. |.+|..+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~~-g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSAR-GHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhC-CCcEEEEeCCH
Confidence            78999999999999999998 99999999753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.57  E-value=0.013  Score=44.89  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=28.2

Q ss_pred             EEEE-CCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVI-GGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVV-GaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.|| |+|..|...|.+|+++ |++|+|..|.+
T Consensus         3 i~vigGaG~iG~alA~~la~~-G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATL-GHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            6788 7899999999999998 99999999864

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.39  E-value=0.016  Score=44.62  Aligned_cols=31  Identities=13%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .|.|||+|.-|.+.|..|+++ |.+|.|..+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            478999999999999999998 9999998653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.36  E-value=0.02  Score=43.40  Aligned_cols=34  Identities=15%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ...|+|||+|.+|+.++.-+... |.+|.++|...
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcH
Confidence            46899999999999999999998 99999999763

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.35  E-value=0.021  Score=43.84  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ...|+|||+|.+|+.+|.-+... |.+|.++|...
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            36999999999999999999887 99999999865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.18  E-value=0.025  Score=41.95  Aligned_cols=37  Identities=11%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      |+..--+.|||+|..|.++|+.|+.. +  .++.|+|...
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~-~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQ-GIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhc-CCCcEEEEeeccc
Confidence            34456899999999999999999997 5  4799999753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.18  E-value=0.027  Score=42.15  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|||||||-.|+=+|..|.+.+..+|.++++.+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            699999999999999999998335688998865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.61  E-value=0.023  Score=42.18  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEA   88 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~   88 (310)
                      --++|||||..|+.-|..|.+. |.+|.|+..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~-GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPT-GCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG-TCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeC
Confidence            4799999999999999999998 999999953

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.51  E-value=0.029  Score=39.08  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=27.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =+|+|||+|..|+=+|..|++. ..+|.++-+-+
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHh-cCEEEEEEecC
Confidence            4899999999999999999997 67766665543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.46  E-value=0.036  Score=41.69  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=28.5

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-|||.|..|.+.|..|.++ |++|.+.|+.+
T Consensus         3 I~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            67999999999999999997 99999998863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.35  E-value=0.054  Score=40.43  Aligned_cols=38  Identities=16%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +....-+.|||+|..|.++|+.|+..+=.+++|+|..+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            34568899999999999999999997324799998654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.08  E-value=0.048  Score=40.35  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=29.7

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+.||| .|..|...|..|.++ |++|.+.++..
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRAS-GYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHc-CCCcEeccccc
Confidence            799999 799999999999998 99999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.05  E-value=0.046  Score=38.37  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      .--|+|||+|-.|..-|..|.+. |.+|+++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence            34799999999999999999997 9999998743

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.044  Score=41.53  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+|+|+|+|.++-++++.|.+. |.+|.++.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~-g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSL-DCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhccc-ceEEEeccchH
Confidence            4799999999999999999997 88999998763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.072  Score=39.37  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+||+|.|..|..+|..|.+. |.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~-~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR-GQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            389999999999999999997 99999999764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.97  E-value=0.075  Score=39.22  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=27.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      -+.|||+|..|.++|+.|+.. +.  +++|+|...
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQ-GVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhc-CCCceEEEEeccc
Confidence            478999999999999999987 53  789998753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.54  E-value=0.084  Score=39.02  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      ..-|.|||+|..|.++|+.|+.. +.  ++.|+|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~-~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc-CCCceEEEEeecc
Confidence            35799999999999999999997 54  699999753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.47  E-value=0.095  Score=39.33  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|+|+|+.|+.++.-+... |.+|+++|+.+
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhh-cccccccchHH
Confidence            689999999999987666555 99999999764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.13  Score=38.14  Aligned_cols=46  Identities=11%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             cccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEeccC
Q psy17311        247 PVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVISF  300 (310)
Q Consensus       247 ~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG~  300 (310)
                      ...+..|++++++++|.+|.-   +    |+.+..+|++..+.|+ .||+|+|.
T Consensus       116 ~~~~~~gv~~~~~~~v~~i~~---~----gv~~~~~g~e~~i~aD-~Vv~A~Gq  161 (162)
T d1ps9a2         116 TTLLSRGVKMIPGVSYQKIDD---D----GLHVVINGETQVLAVD-NVVICAGQ  161 (162)
T ss_dssp             HHHHHTTCEEECSCEEEEEET---T----EEEEEETTEEEEECCS-EEEECCCE
T ss_pred             HHHhhCCeEEEeeeEEEEEcC---C----CCEEecCCeEEEEECC-EEEECCCC
Confidence            345668999999999999842   2    4555668888889998 89999884

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.28  E-value=0.11  Score=37.94  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -+.|||+|..|.++|+.|+..+=.+++|+|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            478999999999999999997334899998654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=91.13  E-value=0.18  Score=37.66  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      ..-|.|||+|..|.++|+.|+.. |.  ++.|+|...
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGK-SLADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            46999999999999999999997 65  799999753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.96  E-value=0.066  Score=38.43  Aligned_cols=35  Identities=14%  Similarity=0.295  Sum_probs=27.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhccCCCe-EEEEcCC
Q psy17311         55 REYDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAG   89 (310)
Q Consensus        55 ~~~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g   89 (310)
                      .++-++|+|+|.+|..++.++..+.+++ |..+|-.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd   37 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVD   37 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESC
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCc
Confidence            3578999999999999998887655777 5566644

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.88  E-value=0.12  Score=38.57  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      --|.|||+|..|.++|+.|... +.  +++|+|...
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~-~l~~elvL~D~~~   54 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLK-GLADELALVDADT   54 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TSCSEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence            4799999999999999999997 55  699998653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.84  E-value=0.14  Score=38.55  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      -.|+|+|+|.++-++++.|.+. |. +|.|+.|..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~~   51 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARNV   51 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCCEEEEecccH
Confidence            4799999999999999999998 74 799987753

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.096  Score=39.43  Aligned_cols=32  Identities=16%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|+|+|+|+.|+.++.-|... |. +|+++|+.+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHc-CCceEEeccCCH
Confidence            599999999999888777776 76 799999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.80  E-value=0.12  Score=37.82  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=27.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      -+.|||+|..|.++|+.|+.. +.  +++|+|..+
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~-~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQR-GIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhc-CCCcEEEEEEecc
Confidence            489999999999999999997 65  699998653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=90.70  E-value=0.13  Score=37.58  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~~   91 (310)
                      -+.|||+|..|.++|+.|... +.  ++.|+|..+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~D~~~~   37 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALR-QTANELVLIDVFKE   37 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-TCSSEEEEECCC--
T ss_pred             eEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeccCC
Confidence            488999999999999999997 54  6999997653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.61  E-value=0.14  Score=38.71  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.+|=|||-|..|...|.+|.++ |++|.+.++.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~-G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH-GFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-TCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence            35789999999999999999998 99999999865

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.53  E-value=0.12  Score=39.73  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=28.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|.| +|..|..+|.+|+++ |.+|+++.|..
T Consensus        25 ~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~   57 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKL   57 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             EEEEECCCHHHHHHHHHHHHhh-ccchhhcccch
Confidence            678888 799999999999998 99999999874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.24  E-value=0.15  Score=38.05  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |-|||-|..|...|.+|.++ |++|.+.++.+
T Consensus         4 Ig~IGlG~MG~~iA~~L~~~-g~~v~~~d~~~   34 (162)
T d3cuma2           4 IAFIGLGHMGAPMATNLLKA-GYLLNVFDLVQ   34 (162)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSSH
T ss_pred             EEEEEEHHHHHHHHHHHHHC-CCeEEEEECch
Confidence            78999999999999999998 99999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.09  E-value=0.15  Score=38.20  Aligned_cols=33  Identities=9%  Similarity=0.120  Sum_probs=26.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|+|+|+|..|+.++.-+... |.+|.+++..+.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAM-GAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhc-cccccccccchh
Confidence            589999999999876655555 999999998653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=89.73  E-value=0.19  Score=36.62  Aligned_cols=32  Identities=38%  Similarity=0.571  Sum_probs=27.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      .+.|||+|..|.++|+.|+.. +  -++.|+|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~-~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEK-QLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCceEEEecccc
Confidence            378999999999999999996 5  3799999765

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.45  E-value=0.21  Score=36.58  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=26.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      -+.|||+ |..|.++|+.|+.. +.  .+.|+|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhC-CccceEEEEecc
Confidence            3789995 99999999999987 54  58888864

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.37  E-value=0.17  Score=38.96  Aligned_cols=30  Identities=23%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +.|||.|-.|+++|.-++ . |.+|+.+|-.+
T Consensus         3 I~ViGlG~vGl~~a~~~a-~-g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLS-L-QNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHT-T-TSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHH-C-CCcEEEEECCH
Confidence            789999999999999886 4 89999999654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.31  E-value=0.15  Score=37.98  Aligned_cols=32  Identities=13%  Similarity=0.122  Sum_probs=26.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|+|+|+.|+.++.-+.. .|.+|.++++.+
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~-~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARA-MGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHH-cCCccceecchh
Confidence            69999999999886655544 489999998764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.30  E-value=0.18  Score=36.81  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      .+.|||+|..|.++|+.|+.+ +.  .+.|+|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLN-LDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-SCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhc-CcCceEEEEeccc
Confidence            478999999999999999987 43  599998653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.14  E-value=0.2  Score=37.21  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |=|||-|..|...|.+|+++ |++|.+.++.+
T Consensus         3 IgiIGlG~MG~~~A~~L~~~-G~~V~~~d~~~   33 (161)
T d1vpda2           3 VGFIGLGIMGKPMSKNLLKA-GYSLVVSDRNP   33 (161)
T ss_dssp             EEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEehhHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            67999999999999999998 99999998864

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.30  E-value=0.22  Score=36.17  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCC--CeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAH--WSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g--~~VlllE~g~   90 (310)
                      .+.|||+|..|.++|+.|+.. +  .++.|+|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~-~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCCCEEEEEeccc
Confidence            478999999999999999986 5  3799998653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.2  Score=40.05  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPD   91 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~   91 (310)
                      ..-|+|||+|..|+.+|..|++. |. ++.|+|....
T Consensus        30 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCccc
Confidence            46899999999999999999998 65 7999986654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.13  E-value=0.011  Score=47.31  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -.++|||+|..|+-+|..|++. |.+|.|+++.+.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~r~~~  214 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEA-NPQIAIPYKRET  214 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSS-CTTSCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhc-CCceEEEEeccc
Confidence            4789999999999999999998 999999999864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=88.05  E-value=0.29  Score=37.16  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=29.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.|+|+|+|.+|-++++.|.+.+..++.++.|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            4899999999999999999998445788988864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.97  E-value=0.27  Score=35.96  Aligned_cols=31  Identities=23%  Similarity=0.466  Sum_probs=26.6

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCC--eEEEEcCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHW--SILLLEAG   89 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~--~VlllE~g   89 (310)
                      .|.|||+ |..|.++|+.|+.. +.  ++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~-~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKE-PFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTC-TTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhC-Ccccccccccch
Confidence            4889995 99999999999997 63  78999875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.95  E-value=0.35  Score=39.55  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=26.9

Q ss_pred             cEEEE--CCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVI--GGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVV--GaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++||  |+|..|..+|.+|+++ |.+|+++++..
T Consensus        26 K~alITGas~GIG~aiA~~la~~-Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            44555  5788999999999998 99999999864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.94  E-value=0.31  Score=35.83  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .-+.|||+|..|.++|+.|...+=.+++|+|..+
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4699999999999999999886223699999754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.76  E-value=0.27  Score=37.10  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=27.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =|+|+|+|..|+.+...+...+..+|.++|..+
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            389999999999988888877336899999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.69  E-value=0.098  Score=36.66  Aligned_cols=50  Identities=12%  Similarity=0.007  Sum_probs=33.3

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.+..++.|++++++++|+++.    ++..  +....++...++.++ .||+|+|
T Consensus        66 ~~l~~~l~~~gV~i~~~~~V~~i~----~~~~--~~~~~~~~~~~i~~D-~vi~A~G  115 (115)
T d1lvla2          66 APVAESLKKLGIALHLGHSVEGYE----NGCL--LANDGKGGQLRLEAD-RVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHTCEEETTCEEEEEE----TTEE--EEECSSSCCCEECCS-CEEECCC
T ss_pred             HHHHHHHHhhcceEEcCcEEEEEc----CCeE--EEEEcCCCeEEEEcC-EEEEecC
Confidence            345455677899999999999983    3322  222234444578897 7888876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=87.42  E-value=0.19  Score=37.89  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|+|+|.++-++++.|.+. +.+|.++-|..
T Consensus        19 k~vlIlGaGGaarai~~aL~~~-~~~i~I~nR~~   51 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQA-QQNIVLANRTF   51 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT-TCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHccc-CceeeeccchH
Confidence            4699999999999999999985 78999998864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.40  E-value=0.29  Score=36.82  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+=|||-|..|...|.+|.++ |++|.+.++.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~-G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEK-GFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-TCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHC-CCeEEEEECCH
Confidence            477999999999999999998 99999998753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.36  E-value=0.28  Score=36.51  Aligned_cols=31  Identities=23%  Similarity=0.420  Sum_probs=26.9

Q ss_pred             EEEECCChhHHHHHHHHhccCCC--eEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHW--SILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~--~VlllE~g~   90 (310)
                      +.|||.|..|.+.|..|.+. |+  +|...|+..
T Consensus         4 I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~   36 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINP   36 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCH
T ss_pred             EEEEccCHHHHHHHHHHHhc-CCCeEEEEEECCh
Confidence            78999999999999999997 75  688888753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.33  E-value=0.23  Score=37.58  Aligned_cols=32  Identities=13%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|+|+|+|+.|+.++.-+... |. +|.++|..+
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSP   63 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCH
T ss_pred             EEEEECCCccchhheeccccc-cccccccccccc
Confidence            588999999998766666555 86 799999764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.20  E-value=0.31  Score=36.06  Aligned_cols=32  Identities=16%  Similarity=0.260  Sum_probs=25.4

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|+|+|+|+.|+.++.-+... |.+|.+++..+
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcC-CCeEeccCCCH
Confidence            589999999998866555554 89999998654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.13  E-value=0.31  Score=36.43  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|+|+|+|..|+.++..++...+.+|..++..+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            388899999999999999887566799898765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.04  E-value=0.29  Score=36.96  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=27.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      -.++|+|+|.++-++++.|.+. | +|.|+-|.
T Consensus        19 k~vlIlGaGG~arai~~aL~~~-~-~i~I~nR~   49 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKD-N-NIIIANRT   49 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS-S-EEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHccc-c-ceeeehhh
Confidence            4799999999999999999885 6 89999875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.01  E-value=0.26  Score=37.95  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|+|+|+.|+.++.-+...+..+|.++|..+
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            899999999998888877665345899988654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.97  E-value=0.32  Score=36.45  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      |+|+|+|..|+.++..++...+.+|..++..+
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            89999999999999999998457899998765

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=0.12  Score=38.30  Aligned_cols=25  Identities=32%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCe
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWS   82 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~   82 (310)
                      -.|||||+|..|+-+|..|++. |.+
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~-G~~   54 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQP-GES   54 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCC-SSC
T ss_pred             CceEEEcCchhHHHHHHHHHHc-CCc
Confidence            3899999999999999999998 654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.85  E-value=0.23  Score=38.74  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=27.7

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =+|+|||+|..|+=+|..|++. +.++.++=+.+
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHHhh-hcccccccccc
Confidence            4899999999999999999998 77776665543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.36  E-value=0.34  Score=38.54  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=25.7

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||.|+ +..|..+|.+|+++ |++|+++++..
T Consensus         4 vlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAA-GHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence            355564 66999999999998 99999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.23  E-value=0.44  Score=37.65  Aligned_cols=33  Identities=21%  Similarity=0.506  Sum_probs=28.0

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +||.|+ |..|..+|.+|+++ |++|.++++....
T Consensus         5 vlITGas~GIG~a~a~~l~~~-G~~V~~~~~~~~~   38 (236)
T d1dhra_           5 VLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENE   38 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCT
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCccc
Confidence            688887 56899999999998 9999999876543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.09  E-value=0.35  Score=35.39  Aligned_cols=31  Identities=26%  Similarity=0.238  Sum_probs=27.9

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-|||.|..|...|.+|.++ |++|.+.++..
T Consensus         3 IgiIG~G~mG~~ia~~l~~~-g~~v~~~~~~~   33 (152)
T d1i36a2           3 VGFIGFGEVAQTLASRLRSR-GVEVVTSLEGR   33 (152)
T ss_dssp             EEEESCSHHHHHHHHHHHHT-TCEEEECCTTC
T ss_pred             EEEEcHHHHHHHHHHHHHHC-CCeEEEEcCch
Confidence            67999999999999999998 99999987654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=85.88  E-value=0.38  Score=35.78  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=25.2

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|+|+|..|+.++. +++.-|.+|++++..+
T Consensus        33 ~VlI~GaG~vG~~a~q-lak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIK-LAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             EEEEECCSHHHHHHHH-HHHHTTCEEEEEESSG
T ss_pred             EEEEeccchHHHHHHH-Hhhcccccchhhccch
Confidence            6999999999987664 4454499998888754

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.49  E-value=0.41  Score=34.79  Aligned_cols=30  Identities=17%  Similarity=0.415  Sum_probs=25.5

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCC--eEEEEcC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHW--SILLLEA   88 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~--~VlllE~   88 (310)
                      -|.||| +|..|.++|+.|..+ +.  .++|+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~-~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR-DIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhC-CCCCEEEEEec
Confidence            378999 699999999999997 54  5888885

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.29  E-value=1.2  Score=34.70  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      +--|||.|+|.+|+.+|..+.+..-.++.++|+.+..
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            4579999999999999999988744579999987543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.38  Score=38.87  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=26.4

Q ss_pred             EEEECCCh-hHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGS-AGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~-aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.||.. .|..+|.+|+++ |++|+++.|..
T Consensus        17 alITGassGIG~aiA~~la~~-G~~Vil~~r~~   48 (269)
T d1xu9a_          17 VIVTGASKGIGREMAYHLAKM-GAHVVVTARSK   48 (269)
T ss_dssp             EEESSCSSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            67777654 899999999998 99999998863

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.13  E-value=0.44  Score=38.37  Aligned_cols=31  Identities=10%  Similarity=-0.005  Sum_probs=27.1

Q ss_pred             EEEECC-C--hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG-G--SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa-G--~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|.|+ |  ..|..+|.+|+++ |++|.++.+.+
T Consensus         8 alITGaag~~GIG~AiA~~la~~-Ga~V~i~~r~~   41 (274)
T d2pd4a1           8 GLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE   41 (274)
T ss_dssp             EEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST
T ss_pred             EEEECCCCCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            788885 4  5899999999998 99999999864

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=0.39  Score=35.79  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -++|||-|-.|-.+|.+|... |.+|++.|..+
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~-G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGF-GARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhC-CCeeEeeeccc
Confidence            699999999999999999997 99999999864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=84.20  E-value=0.53  Score=35.32  Aligned_cols=32  Identities=16%  Similarity=0.133  Sum_probs=26.3

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|+|+|+|+.|+.++.-+... |. +|++.|..+
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIA-GASRIIAIDING   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCG
T ss_pred             EEEEECCChHHHHHHHHHHHh-CCceeeeeccch
Confidence            699999999999988877776 76 677888754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.15  E-value=0.5  Score=33.18  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=32.6

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEecc
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEVIS  299 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIlaaG  299 (310)
                      .++.+..++.|+++++++.|+++.    ++.   |.+ .+|+  ++.++ .||+|.|
T Consensus        76 ~~~~~~l~~~GV~i~~~~~v~~~~----~~~---v~l-~dg~--~i~~D-~vi~a~G  121 (121)
T d1d7ya2          76 DFVARYHAAQGVDLRFERSVTGSV----DGV---VLL-DDGT--RIAAD-MVVVGIG  121 (121)
T ss_dssp             HHHHHHHHTTTCEEEESCCEEEEE----TTE---EEE-TTSC--EEECS-EEEECSC
T ss_pred             HHHHHHHHHCCcEEEeCCEEEEEe----CCE---EEE-CCCC--EEECC-EEEEeeC
Confidence            455556678899999999999874    232   333 4564  57887 7888876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.09  E-value=0.53  Score=35.31  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=25.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCC-eEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~   90 (310)
                      .|+|+|+|..|+.++.-+... |. +|.++|..+
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~   62 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRP   62 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCH
T ss_pred             EEEEEcCCcchhhhhhhhhcc-cccccccccchh
Confidence            699999999998866666655 75 799998764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=84.08  E-value=0.53  Score=37.68  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPDEN   93 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~~~   93 (310)
                      -|+|+|| |..|..++.+|.++ |++|.++.|.+...
T Consensus         5 KILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~~   40 (307)
T d1qyca_           5 RILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTAS   40 (307)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCccc
Confidence            5899997 99999999999997 99999999986543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.93  E-value=0.5  Score=36.53  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      --|+|-|.|..|..+|..|.+. |.+|++.|..
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~-Gakvvv~d~d   59 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEA-GAQLLVADTD   59 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEecch
Confidence            4699999999999999999998 9999988753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.65  E-value=0.53  Score=36.85  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=26.4

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      +||-|+ +..|..+|.+|+++ |++|++.++...
T Consensus         4 alITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKAR-GYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcc
Confidence            344454 78999999999998 999999998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=83.46  E-value=0.64  Score=33.94  Aligned_cols=31  Identities=13%  Similarity=0.268  Sum_probs=28.0

Q ss_pred             EEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +-|||+|..|.+.|..|.+. +++|.+.++..
T Consensus         3 Ig~IG~G~mG~al~~~l~~~-~~~i~v~~r~~   33 (152)
T d2ahra2           3 IGIIGVGKMASAIIKGLKQT-PHELIISGSSL   33 (152)
T ss_dssp             EEEECCSHHHHHHHHHHTTS-SCEEEEECSSH
T ss_pred             EEEEeccHHHHHHHHHHHhC-CCeEEEEcChH
Confidence            67999999999999999997 89999998763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.53  Score=36.04  Aligned_cols=32  Identities=13%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|+|+| +|..|..++.+|.++ |++|.++-|.+
T Consensus         5 kIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~   37 (205)
T d1hdoa_           5 KIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDS   37 (205)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCG
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcCh
Confidence            389999 599999999999998 99999998864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.84  E-value=0.63  Score=33.92  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .+.+||+|..|.+.|..|.++++.+|.+.++.+
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            378999999999999999887448999998874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=82.83  E-value=0.53  Score=37.57  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=26.1

Q ss_pred             EEEECCC---hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGGG---SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGaG---~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||.|++   ..|..+|.+|+++ |++|++..+.+
T Consensus        11 alITGas~~~GIG~aiA~~la~~-Ga~V~i~~~~~   44 (256)
T d1ulua_          11 ALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAE   44 (256)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHHT-TCEEEEEESSG
T ss_pred             EEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCcH
Confidence            7888864   4899999999998 99999987753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.83  E-value=0.6  Score=32.52  Aligned_cols=50  Identities=18%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEe
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEV  297 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIla  297 (310)
                      .++....++.|++++++++|++|...+ ++++ -|.+. +|+... .++ .||.|
T Consensus        67 ~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~~-~v~~~-~G~~~~-~~D-~Vi~A  116 (117)
T d1onfa2          67 NVLENDMKKNNINIVTFADVVEIKKVS-DKNL-SIHLS-DGRIYE-HFD-HVIYC  116 (117)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESS-TTCE-EEEET-TSCEEE-EES-EEEEC
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEEcC-CCeE-EEEEC-CCCEEE-eCC-EEEEe
Confidence            344455567899999999999998764 4433 34433 554322 346 66665

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=82.74  E-value=0.88  Score=31.40  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCCeEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~~~   92 (310)
                      ..-+-|+|+|--|-..|..+.+. |.+|.++|..+..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~l-G~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRL-GVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTT-TCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC-CCEEEEEcCCCCC
Confidence            45799999999999999999998 9999999987653

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.58  E-value=0.59  Score=37.43  Aligned_cols=32  Identities=16%  Similarity=0.303  Sum_probs=26.2

Q ss_pred             EEEECCC-hhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         59 FIVIGGG-SAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        59 vIVVGaG-~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      ++|.||+ ..|..+|.+|+++ |++|++..+...
T Consensus        12 alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~   44 (260)
T d1h5qa_          12 IIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAA   44 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCT
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHH
Confidence            4555654 5899999999998 999999998753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.51  E-value=0.64  Score=37.21  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             EEEE--CCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVI--GGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVV--GaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +++|  |++..|..+|.+|+++ |++|++..+.+
T Consensus         6 ~alITGas~GIG~aiA~~la~~-Ga~V~~~~r~~   38 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence            4455  4556899999999998 99999999864

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=82.40  E-value=0.54  Score=34.92  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -.++|+|=|-.|--+|.+|... |.+|.|.|..|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~-Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGL-GARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhC-CCEEEEEecCc
Confidence            4799999999999999999998 99999999875

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.17  E-value=0.55  Score=37.50  Aligned_cols=32  Identities=16%  Similarity=0.054  Sum_probs=26.0

Q ss_pred             cEEEECC-Ch--hHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGG-GS--AGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGa-G~--aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      =+||.|+ |.  .|..+|.+|+++ |.+|++..+..
T Consensus         8 ~~lItGaag~~GIG~aiA~~la~~-Ga~Vil~~~~~   42 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDR   42 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHHT-TCEEEEEECSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc-CCEEEEEeCCh
Confidence            3788885 54  799999999998 99999987653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.01  E-value=0.62  Score=37.07  Aligned_cols=31  Identities=19%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             EEEE-CCC-hhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVI-GGG-SAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVV-GaG-~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +++| |++ ..|..+|.+|+++ |++|+++++..
T Consensus         9 v~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~   41 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINK   41 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            4444 554 4899999999998 99999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.99  E-value=0.57  Score=34.88  Aligned_cols=33  Identities=15%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      .|+|+|+|..|+.++.-+...+..+|++.+..+
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            699999999999987777666345778888764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.70  E-value=0.56  Score=35.07  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=24.3

Q ss_pred             ccEEEECCChhHHHHHHHHhccCCCe-EEEEcCC
Q psy17311         57 YDFIVIGGGSAGAVVASRLSEVAHWS-ILLLEAG   89 (310)
Q Consensus        57 ~DvIVVGaG~aG~~aA~~Lae~~g~~-VlllE~g   89 (310)
                      -.|+|+|+|..|+.++.-+... |.+ |.+.+..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhccccc-ccceeeeeccH
Confidence            3699999999999988777666 665 5566654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.54  E-value=0.68  Score=36.91  Aligned_cols=31  Identities=16%  Similarity=0.241  Sum_probs=25.5

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||.|+ +..|..+|.+|+++ |++|++.++..
T Consensus        13 alITGas~GIG~a~a~~la~~-Ga~V~~~~r~~   44 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKS-VSHVICISRTQ   44 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTT-SSEEEEEESSH
T ss_pred             EEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCH
Confidence            455566 57899999999998 99999999853

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=81.44  E-value=0.71  Score=34.52  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=26.7

Q ss_pred             cEEEECCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         58 DFIVIGGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        58 DvIVVGaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      -|+|+|+|..|+.++.-+...+..+|.++|..+
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            589999999999988888777235788888754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=81.24  E-value=0.69  Score=37.28  Aligned_cols=33  Identities=15%  Similarity=0.260  Sum_probs=29.4

Q ss_pred             cEEEECC-ChhHHHHHHHHhccCCCeEEEEcCCCC
Q psy17311         58 DFIVIGG-GSAGAVVASRLSEVAHWSILLLEAGPD   91 (310)
Q Consensus        58 DvIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~~   91 (310)
                      -|+|+|| |..|..++.+|.++ |++|.++-|...
T Consensus         5 KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~   38 (312)
T d1qyda_           5 RVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEV   38 (312)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCc
Confidence            4999996 99999999999998 999999988654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.04  E-value=0.61  Score=37.86  Aligned_cols=31  Identities=23%  Similarity=0.100  Sum_probs=26.6

Q ss_pred             cEEEECCC---hhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         58 DFIVIGGG---SAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        58 DvIVVGaG---~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      =+||.|++   ..|..+|.+|+++ |.+|++..+.
T Consensus        10 ~alVTGass~~GIG~aiA~~la~~-Ga~Vvi~~~~   43 (297)
T d1d7oa_          10 RAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWV   43 (297)
T ss_dssp             EEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEH
T ss_pred             EEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCc
Confidence            37888975   5999999999998 9999998654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.89  E-value=1  Score=30.12  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=30.5

Q ss_pred             CCCcccEEEECCChhHHHH-HHHHhccCCCeEEEEcCCC
Q psy17311         53 LHREYDFIVIGGGSAGAVV-ASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        53 ~~~~~DvIVVGaG~aG~~a-A~~Lae~~g~~VlllE~g~   90 (310)
                      |+..-.+-+||-|.+|+++ |..|.+. |++|.--|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNE-GYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence            3344578999999999888 8899998 99999888763

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.83  E-value=0.63  Score=40.39  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCCCCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAGPDE   92 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g~~~   92 (310)
                      ..-|+|||+|..|+.+|..|+.. |. ++.|+|-....
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~-Gvg~i~lvD~D~Ve   73 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALS-GFRQIHVIDMDTID   73 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTT-TCCCEEEECCCBCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHc-CCCeEEEEECCCcc
Confidence            45899999999999999999997 76 79999986543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.82  E-value=0.83  Score=36.07  Aligned_cols=31  Identities=29%  Similarity=0.376  Sum_probs=25.6

Q ss_pred             EEEECC-ChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIGG-GSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVGa-G~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +||.|| +..|..+|.+|+++ |++|+++++..
T Consensus         8 alITGas~GIG~aia~~la~~-G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQ-GASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCh
Confidence            456665 45899999999998 99999999865

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=80.59  E-value=0.77  Score=33.89  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             cccEEEECCChhHHHHHHHHhccCCC-eEEEEcCC
Q psy17311         56 EYDFIVIGGGSAGAVVASRLSEVAHW-SILLLEAG   89 (310)
Q Consensus        56 ~~DvIVVGaG~aG~~aA~~Lae~~g~-~VlllE~g   89 (310)
                      .--++|||+|..|..+|..|... |. +|++.-|.
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt   57 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRT   57 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCc
Confidence            34799999999999999999998 76 68888765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.53  E-value=0.8  Score=32.06  Aligned_cols=47  Identities=15%  Similarity=0.057  Sum_probs=33.2

Q ss_pred             hhhhcccCCCCcEEecCcEEEEEEEcCCCCeEEEEEEEECCeEEEEEcCeEEEEe
Q psy17311        243 AFLRPVRKRKNLHIAMRAHVTKILVNPATKKAYGVQFIRHGIKQTVLARREELEV  297 (310)
Q Consensus       243 ~~l~~~~~~~g~~v~~~~~V~~I~~~~~~~~v~GV~~~~~g~~~~i~A~k~VIla  297 (310)
                      .++....++.|+++++++.|++|..+   +++..|  ..+|+  ++.++ .||+|
T Consensus        76 ~~~~~~l~~~gv~~~~~~~v~~i~~~---~~~~~v--~~dg~--~i~~D-~vi~a  122 (123)
T d1nhpa2          76 DVLTEEMEANNITIATGETVERYEGD---GRVQKV--VTDKN--AYDAD-LVVVA  122 (123)
T ss_dssp             HHHHHHHHTTTEEEEESCCEEEEECS---SBCCEE--EESSC--EEECS-EEEEC
T ss_pred             HHHHHHhhcCCeEEEeCceEEEEEcC---CCEEEE--EeCCC--EEECC-EEEEE
Confidence            45555667789999999999999654   455555  23554  57887 67665

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.45  E-value=0.94  Score=32.88  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             cEEEEC-CChhHHHHHHHHhcc-C-CCeEEEEcCC
Q psy17311         58 DFIVIG-GGSAGAVVASRLSEV-A-HWSILLLEAG   89 (310)
Q Consensus        58 DvIVVG-aG~aG~~aA~~Lae~-~-g~~VlllE~g   89 (310)
                      .|.||| +|..|.++|+.|+.. + ...+.|+|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            478999 699999999998643 1 4679999853

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=0.78  Score=36.39  Aligned_cols=31  Identities=10%  Similarity=0.193  Sum_probs=26.6

Q ss_pred             EEEE--CCChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVI--GGGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVV--GaG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      +++|  |++..|..+|.+|+++ |++|++.++.+
T Consensus         8 ~alITGas~GIG~aia~~la~~-G~~Vi~~~r~~   40 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFARE-GAKVIATDINE   40 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            4555  7788999999999998 99999999863

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.34  E-value=0.9  Score=36.10  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             EEEEC-CChhHHHHHHHHhccCCCeEEEEcCCC
Q psy17311         59 FIVIG-GGSAGAVVASRLSEVAHWSILLLEAGP   90 (310)
Q Consensus        59 vIVVG-aG~aG~~aA~~Lae~~g~~VlllE~g~   90 (310)
                      ++|-| ++..|..+|.+|+++ |++|++.++..
T Consensus         8 alITGas~GIG~aia~~la~~-G~~V~~~~~~~   39 (248)
T d2d1ya1           8 VLVTGGARGIGRAIAQAFARE-GALVALCDLRP   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEEESST
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCH
Confidence            45555 678899999999998 99999999864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=80.17  E-value=0.85  Score=36.61  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=24.9

Q ss_pred             EEEE-C-CChhHHHHHHHHhccCCCeEEEEcCC
Q psy17311         59 FIVI-G-GGSAGAVVASRLSEVAHWSILLLEAG   89 (310)
Q Consensus        59 vIVV-G-aG~aG~~aA~~Lae~~g~~VlllE~g   89 (310)
                      |+|| | ++..|..+|.+|+++ |++|++..+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~-Ga~V~i~~~~   35 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHR   35 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCC
Confidence            6666 4 467999999999998 9999998764