Psyllid ID: psy17325
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | 2.2.26 [Sep-21-2011] | |||||||
| P98158 | 4660 | Low-density lipoprotein r | yes | N/A | 0.557 | 0.055 | 0.398 | 1e-62 | |
| A2ARV4 | 4660 | Low-density lipoprotein r | yes | N/A | 0.557 | 0.055 | 0.415 | 2e-62 | |
| P98164 | 4655 | Low-density lipoprotein r | yes | N/A | 0.557 | 0.055 | 0.398 | 8e-59 | |
| Q04833 | 4753 | Low-density lipoprotein r | yes | N/A | 0.555 | 0.053 | 0.418 | 2e-58 | |
| Q91ZX7 | 4545 | Prolow-density lipoprotei | no | N/A | 0.711 | 0.072 | 0.339 | 3e-52 | |
| Q07954 | 4544 | Prolow-density lipoprotei | no | N/A | 0.711 | 0.072 | 0.339 | 1e-51 | |
| O75096 | 1905 | Low-density lipoprotein r | no | N/A | 0.700 | 0.169 | 0.316 | 2e-49 | |
| Q8VI56 | 1905 | Low-density lipoprotein r | no | N/A | 0.700 | 0.169 | 0.316 | 3e-49 | |
| P98157 | 4543 | Low-density lipoprotein r | no | N/A | 0.678 | 0.068 | 0.338 | 3e-49 | |
| Q9QYP1 | 1905 | Low-density lipoprotein r | no | N/A | 0.700 | 0.169 | 0.314 | 8e-49 |
| >sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 167/301 (55%), Gaps = 44/301 (14%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
C+NL+ +CDG DCPNG DE P C+ C H G C++ C P GA C CP G L+ND
Sbjct: 1326 CINLSALCDGVFDCPNGTDESPLCNQDSCSHFNGGCTHQCMQGPFGATCLCPLGYQLAND 1385
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
+ TC+D+NEC+ PG+CSQ C N +GS+ C+C+ Y LE D TCK L++++R
Sbjct: 1386 TKTCEDINECDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTGSENPLLVVASRD 1445
Query: 125 SILVADLE------------------------------------------EKGKDHRAQD 142
I+V ++ + G D R
Sbjct: 1446 KIIVDNITAHTHNLYSLVQDVSFVVALDFDSVTGRVFWSDLLQGKTWSVFQNGTDKRV-- 1503
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPS 202
+ SGL + E +A DWIG ++YW D L IEV +G++R VL N+T+PRG+ LDP
Sbjct: 1504 VHDSGLSVTEMIAVDWIGRNLYWTDYALETIEVSKIDGSHRTVLISKNVTKPRGLALDPR 1563
Query: 203 PGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262
G +FW+DWG +PRIER MDG+ R+ I+ KIYWP GL++D R +YF D+ LD+I
Sbjct: 1564 MGDNVMFWSDWGHHPRIERASMDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYI 1623
Query: 263 D 263
+
Sbjct: 1624 E 1624
|
Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B. Rattus norvegicus (taxid: 10116) |
| >sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/301 (41%), Positives = 167/301 (55%), Gaps = 44/301 (14%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
CVNL+ +CDG DCPNG DE P C+ C H G C++ C P GA C CP G L+ND
Sbjct: 1326 CVNLSALCDGVFDCPNGTDESPLCNQDSCLHFNGGCTHRCIQGPFGATCVCPIGYQLAND 1385
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
+ TC+D+NEC+ PG+CSQ C N +GS+ C+C+ Y LE D TCK L++++R
Sbjct: 1386 TKTCEDVNECDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTASENLLLVVASRD 1445
Query: 125 SI--------------LVADLE----------------------------EKGKDHRAQD 142
I LV D+ + G D R
Sbjct: 1446 KIIMDNITAHTHNIYSLVQDVSFVVALDFDSVTGRVFWSDLLEGKTWSAFQNGTDKRV-- 1503
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPS 202
+ SGL L E +A DWIG +IYW D L IEV +G++R VL N+T+PRG+ LDP
Sbjct: 1504 VHDSGLSLTEMIAVDWIGRNIYWTDYTLETIEVSKIDGSHRTVLISKNVTKPRGLALDPR 1563
Query: 203 PGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262
G +FW+DWG +PRIER MDG+ R+ I+ KIYWP GL++D R +YF D+ LD+I
Sbjct: 1564 MGDNVMFWSDWGHHPRIERASMDGTMRTVIVQEKIYWPCGLSIDYPNRLIYFMDAYLDYI 1623
Query: 263 D 263
+
Sbjct: 1624 E 1624
|
Acts together with cubilin to mediate HDL endocytosis. Mus musculus (taxid: 10090) |
| >sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 164/301 (54%), Gaps = 44/301 (14%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
CVNL+ VCDG DCPNG DE P C+ C G C++ C P GA C CP G +L+ND
Sbjct: 1325 CVNLSVVCDGIFDCPNGTDESPLCNGNSCSDFNGGCTHECVQEPFGAKCLCPLGFLLAND 1384
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
S TC+D++EC+ G CSQ C N +GS+ CSC+ GY+LE D TCK + L++++++
Sbjct: 1385 SKTCEDIDECDILGSCSQHCYNMRGSFRCSCDTGYMLESDGRTCKVTASESLLLLVASQN 1444
Query: 125 SILVADLE------------------------------------------EKGKDHRAQD 142
I+ + + G D R
Sbjct: 1445 KIIADSVTSQVHNIYSLVENGSYIVAVDFDSISGRIFWSDATQGKTWSAFQNGTDRRV-- 1502
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPS 202
+ S + L E +A DW+G ++YW D L IEV +G++R VL N+T PRG+ LDP
Sbjct: 1503 VFDSSIILTETIAIDWVGRNLYWTDYALETIEVSKIDGSHRTVLISKNLTNPRGLALDPR 1562
Query: 203 PGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262
LFW+DWG +PRIER MDGS R+ I+ KI+WP GLT+D R +YF DS LD++
Sbjct: 1563 MNEHLLFWSDWGHHPRIERASMDGSMRTVIVQDKIFWPCGLTIDYPNRLLYFMDSYLDYM 1622
Query: 263 D 263
D
Sbjct: 1623 D 1623
|
Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release. Homo sapiens (taxid: 9606) |
| >sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 160/299 (53%), Gaps = 43/299 (14%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
C+ L ++CDGKT CP G DEG C C CS CH +P G +C+CP GE L N
Sbjct: 1373 CIPLHQLCDGKTHCPGGTDEGGRCARDLCSADRAGCSFKCHNSPNGPICSCPFGEQLVN- 1431
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK-AINHSAAFLIISNR 123
C+ NEC CSQ C + K + CSC+EGY L+ D TCK A N + +SNR
Sbjct: 1432 KTKCEPENECLDSSSCSQRCKDEKHGFTCSCDEGYELDVDKRTCKVADNVKDTRIYVSNR 1491
Query: 124 HSILVAD--------------------------------------LEEKGKDHRAQDIVV 145
+ I +D L A +
Sbjct: 1492 NRIYYSDHKLDNWHTFGAIVENAIALAWDSLTDRIYWSDIREKKILSANRNGTNATVFIA 1551
Query: 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTNRIVLAKDNITQPRGMMLDPSPG 204
GLD+ EG+A DW+G ++YW+DS LN IEV + E+ R +L N++QPRG+ +DP G
Sbjct: 1552 DGLDITEGIALDWVGRNLYWVDSSLNTIEVANLEDPKQRTLLVHQNVSQPRGIAVDPRKG 1611
Query: 205 TRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
+FWTDWG+NP IER MDG++R I+ TKIYWPN + LD T RVYFADSKLDFID
Sbjct: 1612 V--MFWTDWGQNPCIERASMDGTDRQIIVKTKIYWPNTIALDYTTDRVYFADSKLDFID 1668
|
May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/421 (33%), Positives = 200/421 (47%), Gaps = 93/421 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAEC-KHKFGLCSNTCHPTPLGALCTCPPGEILS 62
RCV +C+G+ DC +G+DE GC + EC K CS C +G C C PG L
Sbjct: 2917 RCVAEALLCNGQDDCGDGSDER-GCHVNECLSRKLSGCSQDCEDLKIGFKCRCRPGFRLK 2975
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLE-YDNHTCKAINHSAAFLIIS 121
+D TC D++EC CSQ+C NT GSY C C EGY D H+CKA+ FLI +
Sbjct: 2976 DDGRTCADLDECSTTFPCSQLCINTHGSYKCLCVEGYAPRGGDPHSCKAVTDEEPFLIFA 3035
Query: 122 NRHSILVADLEEKGK---------------DHRAQDIV---------------------- 144
NR+ + +L+ D+R Q I
Sbjct: 3036 NRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHLNGSNVQ 3095
Query: 145 ---VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+GL +GLA DW+GG++YW D + IEV NG R VL + +PR +++D
Sbjct: 3096 VLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSGLREPRALVVDV 3155
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +L+WTDWG++ I RIGMDGS RS I+ TKI WPNGLT+D T R+Y+AD++ D+
Sbjct: 3156 QNG--YLYWTDWGDHSLIGRIGMDGSGRSIIVDTKITWPNGLTVDYVTERIYWADAREDY 3213
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALD 321
I+ A++DGSN +++S + AL
Sbjct: 3214 IE----------------------------------FASLDGSNRHVVLSQDIPHIFALT 3239
Query: 322 LENGMLYYSTLKCTRWLFWTDWGENPRIERI-GMDGSNRSTIISTKIYWPNGLTLDIATR 380
L +Y WTDW E I R G+N++ +IST ++ P L + A R
Sbjct: 3240 LFEDYVY-----------WTDW-ETKSINRAHKTTGANKTLLIST-LHRPMDLHVFHALR 3286
Query: 381 R 381
+
Sbjct: 3287 Q 3287
|
Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A. Mus musculus (taxid: 10090) |
| >sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 143/421 (33%), Positives = 199/421 (47%), Gaps = 93/421 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAEC-KHKFGLCSNTCHPTPLGALCTCPPGEILS 62
RCV +C+G+ DC + +DE GC + EC K CS C +G C C PG L
Sbjct: 2916 RCVAEALLCNGQDDCGDSSDER-GCHINECLSRKLSGCSQDCEDLKIGFKCRCRPGFRLK 2974
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLE-YDNHTCKAINHSAAFLIIS 121
+D TC D++EC CSQ C NT GSY C C EGY D H+CKA+ FLI +
Sbjct: 2975 DDGRTCADVDECSTTFPCSQRCINTHGSYKCLCVEGYAPRGGDPHSCKAVTDEEPFLIFA 3034
Query: 122 NRHSILVADLEEKGK---------------DHRAQDIV---------------------- 144
NR+ + +L+ D+R Q I
Sbjct: 3035 NRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHLNGSNVQ 3094
Query: 145 ---VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+GL +GLA DW+GG++YW D + IEV NG R VL + +PR +++D
Sbjct: 3095 VLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSGLREPRALVVDV 3154
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +L+WTDWG++ I RIGMDGS+RS I+ TKI WPNGLTLD T R+Y+AD++ D+
Sbjct: 3155 QNG--YLYWTDWGDHSLIGRIGMDGSSRSVIVDTKITWPNGLTLDYVTERIYWADAREDY 3212
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALD 321
I+ A++DGSN +++S + AL
Sbjct: 3213 IE----------------------------------FASLDGSNRHVVLSQDIPHIFALT 3238
Query: 322 LENGMLYYSTLKCTRWLFWTDWGENPRIERI-GMDGSNRSTIISTKIYWPNGLTLDIATR 380
L +Y WTDW E I R G+N++ +IST ++ P L + A R
Sbjct: 3239 LFEDYVY-----------WTDW-ETKSINRAHKTTGTNKTLLIST-LHRPMDLHVFHALR 3285
Query: 381 R 381
+
Sbjct: 3286 Q 3286
|
Functions as a receptor for Pseudomonas aeruginosa exotoxin A. Homo sapiens (taxid: 9606) |
| >sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 191/420 (45%), Gaps = 97/420 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDL------AECKHKFGLCSNTCHPTPLGALCTCPP 57
RC+ K+C+G DC + +DE P + C G C+ C CTC
Sbjct: 323 RCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGEENCNVNNGGCAQKCQMVRGAVQCTCHT 382
Query: 58 GEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAF 117
G L+ D TCQD+NEC + GYCSQ CTN++G++ C C GY L D +CKA+
Sbjct: 383 GYRLTEDGHTCQDVNECAEEGYCSQGCTNSEGAFQCWCETGYELRPDRRSCKALG-PEPV 441
Query: 118 LIISNR------------HSILVADLEEKGK---DHR----------------------- 139
L+ +NR +++L+ +LE HR
Sbjct: 442 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 501
Query: 140 AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMML 199
+++V +GL+ GLA DW+ +YW DS +RIEV + +G +R VL N+ +PR + L
Sbjct: 502 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQNLEKPRAIAL 561
Query: 200 DPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259
P GT ++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D+K
Sbjct: 562 HPMEGT--IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 619
Query: 260 DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALA 319
I+ +AN+DGS+ ++S L A
Sbjct: 620 HVIE----------------------------------RANLDGSHRKAVISQGLPHPFA 645
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 379
+ + LY WTDW G N+ II K+++P +DI T
Sbjct: 646 ITVFEDSLY-----------WTDWHTKSINSANKFTGKNQE-IIRNKLHFP----MDIHT 689
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Homo sapiens (taxid: 9606) |
| >sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 191/420 (45%), Gaps = 97/420 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDL------AECKHKFGLCSNTCHPTPLGALCTCPP 57
RC+ K+C+G DC + +DE P + C G C+ C CTC
Sbjct: 323 RCIGQRKLCNGINDCGDSSDESPQQNCRPRTGEENCNVNNGGCAQKCQMVRGAVQCTCHT 382
Query: 58 GEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAF 117
G L+ D TCQD+NEC + GYCSQ CTNT+G++ C C GY L D +CKA+
Sbjct: 383 GYRLTEDGRTCQDVNECAEEGYCSQGCTNTEGAFQCWCEAGYELRPDRRSCKALG-PEPV 441
Query: 118 LIISNR------------HSILVADLEEKGK---DHR----------------------- 139
L+ +NR +++L+ +LE HR
Sbjct: 442 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 501
Query: 140 AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMML 199
+++V +GL+ GLA DW+ +YW DS +RIEV + +G +R VL ++ +PR + L
Sbjct: 502 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 561
Query: 200 DPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259
P GT ++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D+K
Sbjct: 562 HPMEGT--IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 619
Query: 260 DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALA 319
I+ +AN+DGS+ ++S L A
Sbjct: 620 HVIE----------------------------------RANLDGSHRKAVISQGLPHPFA 645
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 379
+ + LY WTDW G N+ II K+++P +DI T
Sbjct: 646 ITVFEDSLY-----------WTDWHTKSINSANKFTGKNQE-IIRNKLHFP----MDIHT 689
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Mus musculus (taxid: 10090) |
| >sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 189/405 (46%), Gaps = 92/405 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAEC-KHKFGLCSNTCHPTPLGALCTCPPGEILS 62
+C+ +CD DC +G+DE C + EC K CS C +G C C PG L
Sbjct: 2913 KCIPEALLCDNNNDCADGSDE-LNCFINECLNKKLSGCSQECEDLKIGYKCRCRPGFRLK 2971
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHT-CKAINHSAAFLIIS 121
+D TC D++EC CSQ C NT GSY C C EGY L+ DN T CKA+ FLI +
Sbjct: 2972 DDGKTCIDIDECSTTYPCSQKCINTLGSYKCLCIEGYKLKPDNPTSCKAVTDEEPFLIFA 3031
Query: 122 NRHSILVADLEEKGK---------------DHRAQDIV---------------------- 144
NR+ + +L+ D+R Q I
Sbjct: 3032 NRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHINGSNVQ 3091
Query: 145 ---VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+GL +GLA DW+GG++YW D + IEV NG R VL + +PR +++D
Sbjct: 3092 VLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTVLVNSGLREPRALVVDV 3151
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +L+WTDWG++ I +IGMDG+NRS I+ TKI WPNGLTLD R+Y+AD++ D+
Sbjct: 3152 QNG--YLYWTDWGDHSLIGKIGMDGTNRSVIVDTKITWPNGLTLDYINSRIYWADAREDY 3209
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALD 321
I+ A++DGSN ++S + AL
Sbjct: 3210 IE----------------------------------FASLDGSNRHTVLSQDIPHIFALT 3235
Query: 322 LENGMLYYSTLKCTRWLFWTDWGENPRIERI-GMDGSNRSTIIST 365
L +Y WTDW E I R G+N++ +IST
Sbjct: 3236 LFEDYIY-----------WTDW-ETKSINRAHKTTGANKTLLIST 3268
|
Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. Gallus gallus (taxid: 9031) |
| >sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 191/420 (45%), Gaps = 97/420 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDL------AECKHKFGLCSNTCHPTPLGALCTCPP 57
RC+ K+C+G DC + +DE P + C G C+ C CTC
Sbjct: 323 RCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGEENCNVNNGGCAQKCQMIRGAVQCTCHT 382
Query: 58 GEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAF 117
G L+ D TCQD+NEC + GYCSQ CTN++G++ C C GY L D +CKA+
Sbjct: 383 GYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALG-PEPV 441
Query: 118 LIISNR------------HSILVADLEEKGK---DHR----------------------- 139
L+ +NR +++L+ +LE HR
Sbjct: 442 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN 501
Query: 140 AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMML 199
+++V +GL+ GLA DW+ +YW DS +RIEV + +G +R VL ++ +PR + L
Sbjct: 502 VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 561
Query: 200 DPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259
P GT ++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D+K
Sbjct: 562 HPMEGT--IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 619
Query: 260 DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALA 319
I+ +AN+DGS+ ++S L A
Sbjct: 620 HVIE----------------------------------RANLDGSHRKAVISQGLPHPFA 645
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 379
+ + LY WTDW G N+ II K+++P +DI T
Sbjct: 646 ITVFEDSLY-----------WTDWHTKSINSANKFTGKNQE-IIRNKLHFP----MDIHT 689
|
Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| 242019639 | 4568 | low-density lipoprotein receptor, putati | 0.696 | 0.070 | 0.567 | 1e-112 | |
| 328709384 | 4640 | PREDICTED: low-density lipoprotein recep | 0.698 | 0.069 | 0.567 | 1e-110 | |
| 307171853 | 4578 | Low-density lipoprotein receptor-related | 0.711 | 0.071 | 0.549 | 1e-110 | |
| 347963623 | 4655 | AGAP000331-PA [Anopheles gambiae str. PE | 0.570 | 0.056 | 0.653 | 1e-110 | |
| 157124457 | 4525 | low-density lipoprotein receptor (ldl) [ | 0.700 | 0.071 | 0.551 | 1e-110 | |
| 270015974 | 2145 | hypothetical protein TcasGA2_TC004414 [T | 0.700 | 0.150 | 0.559 | 1e-109 | |
| 312381670 | 4689 | hypothetical protein AND_05975 [Anophele | 0.700 | 0.068 | 0.554 | 1e-109 | |
| 383859306 | 4572 | PREDICTED: low-density lipoprotein recep | 0.700 | 0.070 | 0.546 | 1e-108 | |
| 307208125 | 4539 | Low-density lipoprotein receptor-related | 0.700 | 0.071 | 0.549 | 1e-108 | |
| 332024241 | 4558 | Low-density lipoprotein receptor-related | 0.698 | 0.070 | 0.562 | 1e-108 |
| >gi|242019639|ref|XP_002430267.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212515374|gb|EEB17529.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 214/377 (56%), Positives = 260/377 (68%), Gaps = 56/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V++RCVN++ VCDGK DCPNGADEGPGCDLAEC H+ GLCSN C TP+GA+CTCPPGE
Sbjct: 1269 VSERCVNISVVCDGKADCPNGADEGPGCDLAECNHRSGLCSNGCKQTPVGAVCTCPPGET 1328
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
LSND+ TCQD+NECE+P CSQ C NTKGSY C+C++GY LE + H CKAINHS+AFLII
Sbjct: 1329 LSNDTYTCQDLNECEKPESCSQHCHNTKGSYYCTCDDGYELELNKHFCKAINHSSAFLII 1388
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRHSILVADL+E+G + +DI
Sbjct: 1389 SNRHSILVADLKEQGLERVPIIVENVVATASNMHTGTIFWSDMKLKKISRLDRSSEPKDI 1448
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIGG+IYWLDSRLN IEV ENG++R+VL K+NITQPRGM LDPSP
Sbjct: 1449 ITNGLDLVEGLAYDWIGGNIYWLDSRLNTIEVARENGSDRMVLLKENITQPRGMCLDPSP 1508
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
G WLFW+DWGENPRIER+GMDG NRSTII+TKIYWPNGLTLD+AT+R+YFADSKLD+ID
Sbjct: 1509 G--WLFWSDWGENPRIERVGMDGLNRSTIINTKIYWPNGLTLDVATKRIYFADSKLDYID 1566
Query: 264 ------CKSLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
++ +Y T+F LYW D N V + G N ++ V
Sbjct: 1567 FCYYNGSGRQQVLAGSHYLLHPHSLTLFEDTLYWTDRQLNRV---LSAQKFRGKNQTV-V 1622
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + L
Sbjct: 1623 SHLISQPLSIHVHHPAL 1639
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328709384|ref|XP_001944217.2| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/377 (56%), Positives = 247/377 (65%), Gaps = 55/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
+RCVN+T VCDG CPNGADEGP CDL EC + CSN C TP+G LCTCP GE+
Sbjct: 1331 ATNRCVNITNVCDGIPHCPNGADEGPNCDLPECDKEGSYCSNGCKQTPVGPLCTCPHGEV 1390
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L N + C D+NEC+ PG CSQ C NTKGSY CSC GYVLE D HTCKA+NHSAAFLII
Sbjct: 1391 L-NTTYECMDLNECDPPGLCSQHCVNTKGSYFCSCAPGYVLESDKHTCKALNHSAAFLII 1449
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRHSILVADL+E+G K +DI
Sbjct: 1450 SNRHSILVADLKEQGLERVPIIVENVVATASNMHTGTIFWSDMKLKKISRLDKSSEPKDI 1509
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ SGLDLVEGLAYDWIGGHIYWLDSRLN +EV +ENGTNRI+L K+NITQPRGMMLDPSP
Sbjct: 1510 ITSGLDLVEGLAYDWIGGHIYWLDSRLNTVEVANENGTNRIILLKENITQPRGMMLDPSP 1569
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
G RWLFWTDWGENPRIER+GMDGSNRS IIS+KIYWPNGLTLDI +RVYFADSKLDFID
Sbjct: 1570 GARWLFWTDWGENPRIERVGMDGSNRSVIISSKIYWPNGLTLDIVNQRVYFADSKLDFID 1629
Query: 264 ------CKSLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
++ +Y T+F LYW D N V + G N ++ V
Sbjct: 1630 FCYYNGTGRQQVIAGSHYLLHPHSLTLFEDTLYWTDRQLNRV---LSAHKFKGKNQTV-V 1685
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + L
Sbjct: 1686 SHLISQPLSIHVHHPSL 1702
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307171853|gb|EFN63508.1| Low-density lipoprotein receptor-related protein 2 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/382 (54%), Positives = 252/382 (65%), Gaps = 54/382 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V + CVN++ VCDGK DCPNGADEGPGCD AEC H+ GLCSN C TPLGA C CP GE
Sbjct: 1291 VTNVCVNVSTVCDGKLDCPNGADEGPGCDFAECNHQSGLCSNGCIRTPLGAQCVCPAGEE 1350
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L++D TCQDMNECE PG CSQ+C NTKGSY C+C +GY L+ D HTCKA NH+ AFLII
Sbjct: 1351 LTSDGYTCQDMNECETPGRCSQICVNTKGSYFCNCVDGYTLQKDKHTCKAYNHTTAFLII 1410
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRH+ILVADL+E+ + QDI
Sbjct: 1411 SNRHTILVADLQEQALERVPINVENVVATASNMHTGTIFWSDMKLKRISRLDRGSDPQDI 1470
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIG ++YWLDS+LN IEV E G R++L K+NITQPRGM LDPSP
Sbjct: 1471 ISTGLDLVEGLAYDWIGQNLYWLDSKLNTIEVAKETGIGRMILVKENITQPRGMCLDPSP 1530
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
G RWLFWTDWGENPRIERIGMDG+NRSTIISTKIYWPNGL LDIA RR+YFADSKLDFID
Sbjct: 1531 GARWLFWTDWGENPRIERIGMDGTNRSTIISTKIYWPNGLALDIANRRIYFADSKLDFID 1590
Query: 264 ------CKSLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
K +++ +Y T+F +YW D N V + G N ++ V
Sbjct: 1591 TCLYDGSKRIQVLAGSHYLLHPHSLTLFEDTMYWTDRQLNRV---LSAHKFKGVNQTV-V 1646
Query: 311 SGQLYEALALDLENGMLYYSTL 332
S + + L++ + + +L T+
Sbjct: 1647 SHLISQPLSIHVHHPVLQPITV 1668
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347963623|ref|XP_310784.4| AGAP000331-PA [Anopheles gambiae str. PEST] gi|333467112|gb|EAA06237.5| AGAP000331-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/300 (65%), Positives = 226/300 (75%), Gaps = 37/300 (12%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V +RCVNLT VCD DCPNGADEG GCDLA+C+H+ GLCSN C TPLGALC CPPGE
Sbjct: 1322 VTERCVNLTSVCDDVPDCPNGADEGLGCDLAQCQHQTGLCSNGCQKTPLGALCICPPGEE 1381
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L+ D+ TC+D+NEC+ PG CSQ CTNTKGSY CSC +GYVLE + HTCKA+NH AAFLII
Sbjct: 1382 LAPDNFTCKDLNECDPPGLCSQRCTNTKGSYFCSCVDGYVLEPNKHTCKAVNHPAAFLII 1441
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRHSILVADL+E+G + Q+I
Sbjct: 1442 SNRHSILVADLKEQGLERVPIIVENVVATASNMHTGTIFWSDMKLKKISRLDRGMEPQEI 1501
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIG ++YWLDS+LN IEV ENG+NR+VL ++NITQPRGM LDPSP
Sbjct: 1502 ISTGLDLVEGLAYDWIGQNLYWLDSKLNTIEVAHENGSNRLVLVRENITQPRGMCLDPSP 1561
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
+WLFWTDWGENPRIERIGMDG+ R TI+STKIYWPNGLTLD+AT+RVYFADSKLDFID
Sbjct: 1562 TAKWLFWTDWGENPRIERIGMDGTMRETIVSTKIYWPNGLTLDVATQRVYFADSKLDFID 1621
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157124457|ref|XP_001660469.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108873980|gb|EAT38205.1| AAEL009869-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/377 (55%), Positives = 253/377 (67%), Gaps = 54/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
+ +RCVNLT VCD DCPNGADEG GCDLA+C H+ GLCSN C TPLGALC CPPGE
Sbjct: 1212 ITERCVNLTSVCDDVEDCPNGADEGLGCDLAQCTHQTGLCSNGCQKTPLGALCICPPGEE 1271
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L+ D+ TC+D+NEC+ PG CSQ+CTNTKGSY CSC +GY+LE + HTCKA+NHS+AFLII
Sbjct: 1272 LAPDNFTCKDLNECDPPGLCSQICTNTKGSYFCSCTDGYILEPNKHTCKAVNHSSAFLII 1331
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRHSILVADL E+G + ++I
Sbjct: 1332 SNRHSILVADLNEQGLERVPIIVENVVATASNMHTGTIFWSDMKLKKISRLDRGQEPREI 1391
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIG ++YWLDS+LN IEVC ENG+NR+VL ++NITQPRGM LDPSP
Sbjct: 1392 ISTGLDLVEGLAYDWIGQNLYWLDSKLNTIEVCSENGSNRLVLVRENITQPRGMCLDPSP 1451
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
++LFWTDWGENPRIERIGMDG+ R TII+TKIYWPNGLTLDI+T+RVYFADSKLDFID
Sbjct: 1452 NAKFLFWTDWGENPRIERIGMDGTMRETIINTKIYWPNGLTLDISTQRVYFADSKLDFID 1511
Query: 264 -------------CKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310
S + + S LYW D N V + GSN ++ V
Sbjct: 1512 FCYYNGTGRQQVLAASHYLLHAHSLSLFEDTLYWTDRQLNRV---LSANKYRGSNQTV-V 1567
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + L
Sbjct: 1568 SHLISQPLSIHVHHPSL 1584
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270015974|gb|EFA12422.1| hypothetical protein TcasGA2_TC004414 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/377 (55%), Positives = 251/377 (66%), Gaps = 54/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V++RCVNLT VCDGK CPNGADEGP CD EC+H+ GLCSN C TP G LC CP GE
Sbjct: 1277 VSERCVNLTNVCDGKPHCPNGADEGPDCDFKECQHQGGLCSNGCKQTPNGPLCLCPSGET 1336
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L +D C+D+NECE PG CSQ CTNTKGSY CSC GY+LE + H+CKA NHS+AFLII
Sbjct: 1337 LKDDGFACEDLNECEPPGICSQTCTNTKGSYFCSCVPGYLLEPNKHSCKAYNHSSAFLII 1396
Query: 121 SNRHSILVADLEEKGKDH-------------------------------------RAQDI 143
SNRHSILVADL+++G + ++
Sbjct: 1397 SNRHSILVADLKDQGLERVPIIVENVVATASNMHTGTIFWSDMKLKKISRLDRGGEPVEV 1456
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIGG+IYWLDS+LN IEV ENG+NRIVL K+NITQPRGM LDPSP
Sbjct: 1457 ISNGLDLVEGLAYDWIGGNIYWLDSKLNTIEVAKENGSNRIVLVKENITQPRGMCLDPSP 1516
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
GTRWLFWTDWGENPRIERIGMDG+ RSTII+TKIYWPNGLTLD AT+RVYFADSKLDFID
Sbjct: 1517 GTRWLFWTDWGENPRIERIGMDGTKRSTIINTKIYWPNGLTLDTATQRVYFADSKLDFID 1576
Query: 264 ------CKSLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
++ +Y T+F LYW D N V + G+N ++ V
Sbjct: 1577 FCYYNGTGRQQVLAGSHYLLHPHSLTLFEDTLYWTDRQLNRV---LSAHKFKGNNQTV-V 1632
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + L
Sbjct: 1633 SHLISQPLSIHVHHPSL 1649
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312381670|gb|EFR27366.1| hypothetical protein AND_05975 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/377 (55%), Positives = 249/377 (66%), Gaps = 54/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V RCVNLT VCD DCPNGADEG GCDLA+C+H+ GLC+N C TPLGALC CPPGE
Sbjct: 1318 VTGRCVNLTSVCDDTPDCPNGADEGLGCDLAQCQHQAGLCTNGCQKTPLGALCICPPGEE 1377
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L D TCQD++EC PG CSQ CTNTKGSY CSC +GYVLE + HTCKA+NHSAAFLII
Sbjct: 1378 LGPDGRTCQDLDECAPPGLCSQRCTNTKGSYFCSCVDGYVLEPNKHTCKAVNHSAAFLII 1437
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRHSILVADL E+G + Q++
Sbjct: 1438 SNRHSILVADLREQGLERVPIIVENVVATASNMHTGTIFWSDMKLKKISRLDRGQEPQEL 1497
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIG ++YWLDS+LN IEV ENG+NR+VL ++NITQPRGM LDP+P
Sbjct: 1498 ITTGLDLVEGLAYDWIGQNLYWLDSKLNTIEVAHENGSNRLVLVRENITQPRGMCLDPAP 1557
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
RWLFWTDWGENPRIERIG+DG+ R+TIISTKIYWPNGLTLD+AT+RVYFADSKLDFID
Sbjct: 1558 SARWLFWTDWGENPRIERIGLDGTMRATIISTKIYWPNGLTLDVATQRVYFADSKLDFID 1617
Query: 264 -------------CKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310
S + + S LYW D N V + G+N ++ V
Sbjct: 1618 FCYYNGTGRQQVLAASHYLLHAHSLSLFEDTLYWTDRQLNRV---LSAHKYRGTNQTV-V 1673
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + L
Sbjct: 1674 SHLISQPLSIHVHHPSL 1690
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383859306|ref|XP_003705136.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/377 (54%), Positives = 252/377 (66%), Gaps = 54/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V DRCVN+T VCDGK DCPNGADEGPGCD+ ECK++ G CSN C TPLG CTCP GE
Sbjct: 1335 VTDRCVNVTSVCDGKFDCPNGADEGPGCDIPECKYRGGYCSNGCIQTPLGKQCTCPAGEE 1394
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L D CQD++ECE PG CSQ+C N KGSY C+C +GY LE D HTCKA NHSAAFLII
Sbjct: 1395 LGADGYACQDVDECEPPGRCSQICVNVKGSYYCNCVDGYSLEGDKHTCKAFNHSAAFLII 1454
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRH+ILVADL+++ + +D+
Sbjct: 1455 SNRHTILVADLQDQALERVPINVENVVATVSNMHTGTIFWSDMKLKKISRLDRGSDPEDV 1514
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+++GLDLVEGLAYDWIG ++YWLDS+LN IEV ENG +R++L K+NITQPRGM LDPSP
Sbjct: 1515 ILTGLDLVEGLAYDWIGQNLYWLDSKLNTIEVARENGADRMILVKENITQPRGMCLDPSP 1574
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
G RWLFWTDWGENPRIERIGMDG+NRSTIISTKIYWPNGL LDIA +R+YFADSKLDFID
Sbjct: 1575 GARWLFWTDWGENPRIERIGMDGTNRSTIISTKIYWPNGLALDIANKRIYFADSKLDFID 1634
Query: 264 ------CKSLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
K +++ + +Y T+F +YW D N V + G N ++ V
Sbjct: 1635 TCLYDGTKRIQVLASSHYLLHPHSLTLFEDTMYWTDRQLNRV---LSAHKFYGVNQTV-V 1690
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + +L
Sbjct: 1691 SHLISQPLSIHVHHPVL 1707
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307208125|gb|EFN85629.1| Low-density lipoprotein receptor-related protein 2 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 207/377 (54%), Positives = 249/377 (66%), Gaps = 54/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V +RC+ VCDGK DCPNG DEG GCDL+EC H+ GLC+N C TP+GA C+CP GE
Sbjct: 1260 VTNRCIPTVNVCDGKPDCPNGGDEGFGCDLSECTHQAGLCTNDCFQTPIGAQCSCPAGEE 1319
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L++D TCQDMNECE PG CSQ+C NTKGSY C+C EGY LE D HTCKA NHSAAFLII
Sbjct: 1320 LTSDGYTCQDMNECEPPGRCSQICVNTKGSYYCNCVEGYTLEKDKHTCKAFNHSAAFLII 1379
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRH+ILVADL+++ + QDI
Sbjct: 1380 SNRHTILVADLQDQALERVPINVENVVATASNMHTGTIFWSDMKLKRISRLDRGSDPQDI 1439
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIG ++YWLDS+LN IEV E G R++L K NITQPRGM LDPSP
Sbjct: 1440 ISTGLDLVEGLAYDWIGHNLYWLDSKLNTIEVAKETGAGRMILVKANITQPRGMCLDPSP 1499
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
RWLFWTDWGENPRIERIGMDG+NRSTIISTKIYWPNGL LDIA RR+YFADSKLDFID
Sbjct: 1500 RARWLFWTDWGENPRIERIGMDGNNRSTIISTKIYWPNGLALDIANRRIYFADSKLDFID 1559
Query: 264 ------CKSLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
K +++ + +Y T+F +YW D N V + GSN ++ V
Sbjct: 1560 TCLYDGSKRIQVLASSHYLLHPHSLTLFEDTMYWTDRQLNRV---LSAHKFMGSNQTV-V 1615
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + +L
Sbjct: 1616 SHLISQPLSIHVHHPVL 1632
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332024241|gb|EGI64445.1| Low-density lipoprotein receptor-related protein 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/377 (56%), Positives = 250/377 (66%), Gaps = 55/377 (14%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V +RCVN T VCDGK DCPNGADEGPGCD AEC H+ GLC+N C TP GA C CP GE
Sbjct: 1278 VKNRCVNTTSVCDGKLDCPNGADEGPGCDTAECHHQDGLCTNGCIQTPFGAQCICPAGEE 1337
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
L NDS TCQD+NEC+ G CSQ+C NTKGSY CSC GY L+ D HTCKA NHSAAFLII
Sbjct: 1338 L-NDSFTCQDINECDPDGRCSQLCKNTKGSYYCSCVNGYTLDADKHTCKAFNHSAAFLII 1396
Query: 121 SNRHSILVADLEEKG-------------------------------------KDHRAQDI 143
SNRH+ILVADL+++ + QDI
Sbjct: 1397 SNRHTILVADLQDQALERVPINVENVVATASNMHTGTIFWSDMKLKRISRLDRGSDPQDI 1456
Query: 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP 203
+ +GLDLVEGLAYDWIG ++YWLDS+LN IEV E G R++L K+NITQPRGM LDPS
Sbjct: 1457 ISTGLDLVEGLAYDWIGQNLYWLDSKLNTIEVAKETGVGRMILVKENITQPRGMCLDPSE 1516
Query: 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263
G RWLFWTDWGENPRIERIGMDG+NRSTIISTKIYWPNGL LDIA RR+YFADSKLDFID
Sbjct: 1517 GARWLFWTDWGENPRIERIGMDGTNRSTIISTKIYWPNGLALDIANRRIYFADSKLDFID 1576
Query: 264 -CK-----SLEIKTNVNY------STIFR-KLYWIDEGGNGVPLKIGKANMDGSNASILV 310
CK L++ + +Y T+F +YW D N V + GSN ++ V
Sbjct: 1577 TCKYDGSQRLQVLASSHYLLHPHSLTLFEDTMYWTDRQLNRV---LSAHKFKGSNQTV-V 1632
Query: 311 SGQLYEALALDLENGML 327
S + + L++ + + +L
Sbjct: 1633 SHLISQPLSIHVHHAVL 1649
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 461 | ||||||
| FB|FBgn0261260 | 4769 | mgl "Megalin" [Drosophila mela | 0.761 | 0.073 | 0.390 | 8.5e-67 | |
| UNIPROTKB|F1PIB4 | 4549 | LRP2 "Uncharacterized protein" | 0.533 | 0.054 | 0.389 | 2.8e-66 | |
| UNIPROTKB|P98164 | 4655 | LRP2 "Low-density lipoprotein | 0.509 | 0.050 | 0.395 | 1.6e-63 | |
| UNIPROTKB|F1NCT3 | 4576 | LRP1B "Uncharacterized protein | 0.752 | 0.075 | 0.288 | 3.5e-49 | |
| ZFIN|ZDB-GENE-050119-2 | 4673 | lrp2a "low density lipoprotein | 0.778 | 0.076 | 0.339 | 1.5e-56 | |
| ZFIN|ZDB-GENE-030131-7126 | 4549 | lrp1b "low density lipoprotein | 0.722 | 0.073 | 0.290 | 7e-39 | |
| UNIPROTKB|E1BGJ0 | 4544 | LRP1 "Uncharacterized protein" | 0.763 | 0.077 | 0.309 | 1.9e-47 | |
| RGD|68407 | 4660 | Lrp2 "low density lipoprotein | 0.778 | 0.077 | 0.302 | 1.1e-51 | |
| UNIPROTKB|P98158 | 4660 | Lrp2 "Low-density lipoprotein | 0.778 | 0.077 | 0.302 | 1.1e-51 | |
| MGI|MGI:95794 | 4660 | Lrp2 "low density lipoprotein | 0.509 | 0.050 | 0.366 | 3.6e-57 |
| FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 8.5e-67, Sum P(3) = 8.5e-67
Identities = 149/382 (39%), Positives = 204/382 (53%)
Query: 1 VADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEI 60
V++RCVN+T VCD DCPNG+DEG GCDLAEC+H+ G CS+ C TP GALC CPPG
Sbjct: 1446 VSERCVNITSVCDDTPDCPNGSDEGEGCDLAECEHQAGQCSSFCQKTPNGALCVCPPGSE 1505
Query: 61 LSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLII 120
+ D TC D NEC+ PG CSQ CTNTKGSY CSC +GYVLE + HTCKA+NH+AAFLII
Sbjct: 1506 IGEDGYTCIDSNECDPPGLCSQQCTNTKGSYFCSCTDGYVLEPNKHTCKAVNHTAAFLII 1565
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
SNRHSILVADL+E+G + I+V V A + G I+W D +L +I D G
Sbjct: 1566 SNRHSILVADLKEQGLER--VPIIVEN---VVATASNMHTGTIFWSDMKLKKISRLDR-G 1619
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240
+ + G+ D L+W D N IE +GSNR ++ I P
Sbjct: 1620 MEPQEIINTGLDLVEGLAYDWIAQN--LYWLDSKLNT-IEVSAENGSNRLVLVRENITQP 1676
Query: 241 NGLTLDIA--TRRVYFAD----SKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294
G+ +D + R +++ D +++ I KT +N K+YW NG+ L
Sbjct: 1677 RGMCIDPSPGARWIFWTDWGENPRVERIGMDGTMRKTIIN-----TKIYW----PNGLTL 1727
Query: 295 KIGKANMDGSNASI-LVSGQLYEALA----LDLENGMLYYSTLKCTR-WLFWTDWGENPR 348
I + +++ + + Y L + +L+ +L L+WTD N
Sbjct: 1728 DIATKRVYFADSKLDFIDFCYYNGTGRQQVLASSHYLLHPHSLSLFEDTLYWTDRQLNRV 1787
Query: 349 IERIGMDGSNRSTIISTKIYWP 370
+ G N+ T++S I P
Sbjct: 1788 LSANKFRGKNQ-TVVSHLISQP 1808
|
|
| UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 2.8e-66, Sum P(3) = 2.8e-66
Identities = 99/254 (38%), Positives = 149/254 (58%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
CVNL+ VCDG +DCPNG DE P C+ C G C++ C P GA C CP G +L+ND
Sbjct: 1297 CVNLSAVCDGISDCPNGTDESPLCNQDSCSDSNGGCTHQCVQGPFGAQCLCPSGYLLAND 1356
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
S TC+D++EC+ PG+CSQ C N +GS+ C C++ Y L+ D TCK + L++++++
Sbjct: 1357 SKTCEDIDECDVPGFCSQHCYNMRGSFRCWCDKEYTLDADRRTCKVTASESLLLLVASQN 1416
Query: 125 SILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
I VAD + H +V +G +V L +D I G ++W D +I +NGT+R
Sbjct: 1417 QI-VAD-NITSQVHNIYSVVRNGSHIV-ALDFDSISGRVFWSDGSQGKIWSAFQNGTDRR 1473
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 244
V+ +T +++D G R L+WTD+ IE +DGS+R+ +IS I P GL
Sbjct: 1474 VILNSGVTMTESIVVD-WVG-RNLYWTDYALET-IEVSKLDGSHRTVLISKNISNPRGLA 1530
Query: 245 LD--IATRRVYFAD 256
LD I+ ++++D
Sbjct: 1531 LDPRISDHLMFWSD 1544
|
|
| UNIPROTKB|P98164 LRP2 "Low-density lipoprotein receptor-related protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.6e-63, Sum P(3) = 1.6e-63
Identities = 96/243 (39%), Positives = 141/243 (58%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
CVNL+ VCDG DCPNG DE P C+ C G C++ C P GA C CP G +L+ND
Sbjct: 1325 CVNLSVVCDGIFDCPNGTDESPLCNGNSCSDFNGGCTHECVQEPFGAKCLCPLGFLLAND 1384
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
S TC+D++EC+ G CSQ C N +GS+ CSC+ GY+LE D TCK + L++++++
Sbjct: 1385 SKTCEDIDECDILGSCSQHCYNMRGSFRCSCDTGYMLESDGRTCKVTASESLLLLVASQN 1444
Query: 125 SILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
I +AD + H +V +G +V + +D I G I+W D+ + +NGT+R
Sbjct: 1445 KI-IAD-SVTSQVHNIYSLVENGSYIV-AVDFDSISGRIFWSDATQGKTWSAFQNGTDRR 1501
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGL 243
V+ +I + +D G R L+WTD+ E + +I DGS+R+ +IS + P GL
Sbjct: 1502 VVFDSSIILTETIAID-WVG-RNLYWTDYALETIEVSKI--DGSHRTVLISKNLTNPRGL 1557
Query: 244 TLD 246
LD
Sbjct: 1558 ALD 1560
|
|
| UNIPROTKB|F1NCT3 LRP1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 3.5e-49, Sum P(3) = 3.5e-49
Identities = 108/374 (28%), Positives = 181/374 (48%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGAL-CTCPPGEILSN 63
C+ K+C+G+ DCP+G+DEG CD EC G CS+ C P G + C+CP G LS
Sbjct: 1127 CLQPEKLCNGRRDCPDGSDEGDLCD--ECSLNNGGCSHQCSVVPGGRIVCSCPSGFNLSV 1184
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
D+ TC+ M+ C + CSQ+C K + CSC EG+ L D C + + AF+I S R
Sbjct: 1185 DNKTCEIMDYCTKHLKCSQVCEQHKNNVKCSCYEGWKLSKDGENCISTDPFEAFIIFSIR 1244
Query: 124 HSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLD---SRLNRIEVCDENG 180
H I DL ++ D+ ++V GL L + + +YW D ++ R ++ D G
Sbjct: 1245 HEIRKIDLHKR--DY---SLLVPGLRNTIALDFHFSQSLLYWTDVVEDKIYRGKLSDTGG 1299
Query: 181 TNRI-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239
+ I V+ + + P G+ +D G ++W D +IE +DG+ R+T+I+ +
Sbjct: 1300 VSAIEVIVQHGLATPEGLTVDWIAGN--IYWID-SNLDQIEVAKLDGTLRTTLIAGAMEH 1356
Query: 240 PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGG--NGVPLKIG 297
P + LD +++ D +F +S + + I++ + D G NG+ +
Sbjct: 1357 PRAIALDPRYGILFWTDWDANFPRIESASM-SGAERKIIYKDM---DTGAWPNGLTVDHF 1412
Query: 298 KANMDGSNA-SILVSGQLYEALAL-DLENGMLYYS-TLKCTRW---LFWTDWGENPRIER 351
+ + ++A S + LY+ + ++ G Y S + + ++WTDW N +
Sbjct: 1413 EKRIVWTDARSDAIYSALYDGTGMIEIIRGHEYLSHPFAVSLYGSEVYWTDWRTNTLAKA 1472
Query: 352 IGMDGSNRSTIIST 365
G N S I T
Sbjct: 1473 NKWTGQNVSVIQKT 1486
|
|
| ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 1.5e-56, Sum P(2) = 1.5e-56
Identities = 129/380 (33%), Positives = 192/380 (50%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGC-----DLAECKHKFGLCSNTCHPTPLGALCTCPPGE 59
CVNL++VCD DCPNGADE P C D C C++ C P GA CTCP G
Sbjct: 1318 CVNLSRVCDNTPDCPNGADESPLCNEPLPDQESCSDNNAGCTHGCIQGPFGAQCTCPMGF 1377
Query: 60 ILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLI 119
LSNDS TC+D++EC PG CSQ C N +GS+ C C +GY LE D TCKA A L+
Sbjct: 1378 QLSNDSKTCEDIDECHPPGVCSQHCFNERGSFRCHCQDGYTLEADARTCKASGSREALLL 1437
Query: 120 ISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN 179
+++R+ I+ D+ + + + +V G ++V + +D + IYW D+ +RI +N
Sbjct: 1438 VASRNQIISDDI--LAQPNAIRSLVRDGRNIV-AVDFDSVTERIYWSDTTQDRIWSAHKN 1494
Query: 180 GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239
GT+R V+ +T + +D G R L+WTD+ IE +DGS+R+ +IS +
Sbjct: 1495 GTDRTVIFDSGVTVTESLAVD-WVG-RNLYWTDYILET-IEVSKLDGSHRTVLISENVTN 1551
Query: 240 PNGLTLDIA--TRRVYFAD-SKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP--- 293
P GL +D T +++ D + I+ S++ K + I KLYW + P
Sbjct: 1552 PRGLVVDPRNNTHLMFWTDWGRNPRIERASMDGKLRT--TIISNKLYWPNGLTIDYPNSL 1609
Query: 294 LKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353
L A +D + + LA DL + T+ +++WTD N I
Sbjct: 1610 LYFADAYLDFIDYCDYDGKNRKQVLASDLVLQHPHAITI-FEDFVYWTDRYVNRVIRANK 1668
Query: 354 MDGSNRSTIISTKIYWPNGL 373
G N+S ++ + P GL
Sbjct: 1669 WHGQNQSVMLYN-LPQPMGL 1687
|
|
| ZFIN|ZDB-GENE-030131-7126 lrp1b "low density lipoprotein receptor-related protein 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 7.0e-39, Sum P(3) = 7.0e-39
Identities = 112/385 (29%), Positives = 185/385 (48%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKH-KFGLCSNTCHPTPLGALCTCPPGEILS 62
+CVN T +CD DC +G+DE C + EC + K CS C +G C C G L
Sbjct: 2919 KCVNETLLCDNNNDCGDGSDEN-NCFVNECLNSKLSGCSQLCEDLKIGFKCRCNAGFRLK 2977
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHT-CKAINHSAAFLIIS 121
D TC D++EC CSQ C NT GS+ C C +G+V D+HT CK+ FLI +
Sbjct: 2978 QDGKTCVDLDECSTVYPCSQRCINTHGSFHCLCVDGFVPRPDDHTSCKSTAEEEPFLIFA 3037
Query: 122 NRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLD-----SRLNRIEVC 176
NR+ + +L+ G ++ ++ GL+ L Y + IYW D S + R+ +
Sbjct: 3038 NRYYLRKLNLD--GSNYT---LIKQGLNNAVALDYHYAEQMIYWTDVTTQGSMIRRMHI- 3091
Query: 177 DENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTK 236
NG+N VL + +++ P G+ +D G L+W D G + IE ++G+ RS ++++
Sbjct: 3092 --NGSNVQVLHRTSLSNPDGLAVDWVGGN--LYWCDKGRDT-IEVSKLNGAYRSVLVNSG 3146
Query: 237 IYWPNGLTLDIATRRVYFAD---------SKLDFIDCKSLEIKTNVNYST------IFRK 281
+ P + +D+ +Y++D +D D + + I+ + + I +
Sbjct: 3147 LREPRAVAVDVRNGYLYWSDWGDVPHIGRIGMDGTD-RQIIIQDKITWPNGLTLDFINDR 3205
Query: 282 LYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWT 341
+YW D + + A++DGSN +++ + A+ L +Y WT
Sbjct: 3206 IYWADAREDYIAF----ASLDGSNRHTVLNHDIPHIFAMTLFEEFIY-----------WT 3250
Query: 342 DWGENPRIERIGMD-GSNRSTIIST 365
DW E I R G+N++ +IST
Sbjct: 3251 DW-ETKSINRAHKTLGTNKTLLIST 3274
|
|
| UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 123/397 (30%), Positives = 195/397 (49%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAEC-KHKFGLCSNTCHPTPLGALCTCPPGEILS 62
RCV +C+G+ DC +G+DE GC + EC HK CS C +G C C PG L
Sbjct: 2915 RCVAEALLCNGQDDCGDGSDER-GCHINECLSHKLSGCSQDCEDLKIGFKCRCRPGFRLK 2973
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEY-DNHTCKAINHSAAFLIIS 121
+D TC DM+EC CSQ C NT GSY C C EGY D H+CKA+ FLI +
Sbjct: 2974 DDGRTCADMDECSTTFPCSQRCINTHGSYKCLCVEGYAPRGGDPHSCKAVTDEEPFLIFA 3033
Query: 122 NRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLD--SRLNRIEVCDEN 179
NR+ + +L+ G ++ ++ GL+ L +D+ IYW D ++ + I N
Sbjct: 3034 NRYYLRKLNLD--GSNYT---LLKQGLNNAVALDFDYREQMIYWTDVTTQGSMIRRMHLN 3088
Query: 180 GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239
G+N VL + ++ P G+ +D G L+W D G + IE ++G+ R+ ++S+ +
Sbjct: 3089 GSNVQVLHRTGLSNPDGLAVDWVGGN--LYWCDKGRDT-IEVSKLNGAYRTVLVSSGLRE 3145
Query: 240 PNGLTLDIATRRVYFAD----SKLDFI----DCKSLEIKTNVNYST------IFRKLYWI 285
P L +D+ +Y+ D S + I +S+ + T + + + ++YW
Sbjct: 3146 PRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSSRSVIVDTKITWPNGLTLDYVTERIYWA 3205
Query: 286 DEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGE 345
D + + A++DGSN +++S + AL L +Y WTDW E
Sbjct: 3206 DAREDYIEF----ASLDGSNRHVVLSQDIPHIFALTLFEDYVY-----------WTDW-E 3249
Query: 346 NPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIATRR 381
I R G+N++ +IST ++ P L + A R+
Sbjct: 3250 TKSINRAHKTTGTNKTLLIST-LHRPMDLHVFHALRQ 3285
|
|
| RGD|68407 Lrp2 "low density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 1.1e-51, Sum P(3) = 1.1e-51
Identities = 114/377 (30%), Positives = 189/377 (50%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
C+NL+ +CDG DCPNG DE P C+ C H G C++ C P GA C CP G L+ND
Sbjct: 1326 CINLSALCDGVFDCPNGTDESPLCNQDSCSHFNGGCTHQCMQGPFGATCLCPLGYQLAND 1385
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
+ TC+D+NEC+ PG+CSQ C N +GS+ C+C+ Y LE D TCK L++++R
Sbjct: 1386 TKTCEDINECDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTGSENPLLVVASRD 1445
Query: 125 SILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
I+V ++ H +V + V L +D + G ++W D + +NGT++
Sbjct: 1446 KIIVDNIT--AHTHNLYSLV-QDVSFVVALDFDSVTGRVFWSDLLQGKTWSVFQNGTDKR 1502
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGL 243
V+ ++ + +D G R L+WTD+ E + +I DGS+R+ +IS + P GL
Sbjct: 1503 VVHDSGLSVTEMIAVDWI-G-RNLYWTDYALETIEVSKI--DGSHRTVLISKNVTKPRGL 1558
Query: 244 TLD--IATRRVYFAD-SKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI---G 297
LD + ++++D I+ S++ + + K+YW P ++
Sbjct: 1559 ALDPRMGDNVMFWSDWGHHPRIERASMD--GTMRTVIVQEKIYWPCGLSIDYPNRLIYFM 1616
Query: 298 KANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS 357
A +D + +A DL + TL +++WTD G ++ G
Sbjct: 1617 DAYLDYIEFCDYDGHNRRQVIASDLVLHHPHALTL-FEDFVYWTDRGTRQVMQANKWHGG 1675
Query: 358 NRSTIISTKIYWPNGLT 374
N+S ++ + ++ P G+T
Sbjct: 1676 NQSVVMYS-VHQPLGIT 1691
|
|
| UNIPROTKB|P98158 Lrp2 "Low-density lipoprotein receptor-related protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 1.1e-51, Sum P(3) = 1.1e-51
Identities = 114/377 (30%), Positives = 189/377 (50%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
C+NL+ +CDG DCPNG DE P C+ C H G C++ C P GA C CP G L+ND
Sbjct: 1326 CINLSALCDGVFDCPNGTDESPLCNQDSCSHFNGGCTHQCMQGPFGATCLCPLGYQLAND 1385
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
+ TC+D+NEC+ PG+CSQ C N +GS+ C+C+ Y LE D TCK L++++R
Sbjct: 1386 TKTCEDINECDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTGSENPLLVVASRD 1445
Query: 125 SILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
I+V ++ H +V + V L +D + G ++W D + +NGT++
Sbjct: 1446 KIIVDNIT--AHTHNLYSLV-QDVSFVVALDFDSVTGRVFWSDLLQGKTWSVFQNGTDKR 1502
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGL 243
V+ ++ + +D G R L+WTD+ E + +I DGS+R+ +IS + P GL
Sbjct: 1503 VVHDSGLSVTEMIAVDWI-G-RNLYWTDYALETIEVSKI--DGSHRTVLISKNVTKPRGL 1558
Query: 244 TLD--IATRRVYFAD-SKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI---G 297
LD + ++++D I+ S++ + + K+YW P ++
Sbjct: 1559 ALDPRMGDNVMFWSDWGHHPRIERASMD--GTMRTVIVQEKIYWPCGLSIDYPNRLIYFM 1616
Query: 298 KANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS 357
A +D + +A DL + TL +++WTD G ++ G
Sbjct: 1617 DAYLDYIEFCDYDGHNRRQVIASDLVLHHPHALTL-FEDFVYWTDRGTRQVMQANKWHGG 1675
Query: 358 NRSTIISTKIYWPNGLT 374
N+S ++ + ++ P G+T
Sbjct: 1676 NQSVVMYS-VHQPLGIT 1691
|
|
| MGI|MGI:95794 Lrp2 "low density lipoprotein receptor-related protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 3.6e-57, Sum P(2) = 3.6e-57
Identities = 89/243 (36%), Positives = 136/243 (55%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
CVNL+ +CDG DCPNG DE P C+ C H G C++ C P GA C CP G L+ND
Sbjct: 1326 CVNLSALCDGVFDCPNGTDESPLCNQDSCLHFNGGCTHRCIQGPFGATCVCPIGYQLAND 1385
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRH 124
+ TC+D+NEC+ PG+CSQ C N +GS+ C+C+ Y LE D TCK L++++R
Sbjct: 1386 TKTCEDVNECDIPGFCSQHCVNMRGSFRCACDPEYTLESDGRTCKVTASENLLLVVASRD 1445
Query: 125 SILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
I++ ++ H +V + V L +D + G ++W D + +NGT++
Sbjct: 1446 KIIMDNIT--AHTHNIYSLV-QDVSFVVALDFDSVTGRVFWSDLLEGKTWSAFQNGTDKR 1502
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGL 243
V+ ++ + +D G R ++WTD+ E + +I DGS+R+ +IS + P GL
Sbjct: 1503 VVHDSGLSLTEMIAVDWI-G-RNIYWTDYTLETIEVSKI--DGSHRTVLISKNVTKPRGL 1558
Query: 244 TLD 246
LD
Sbjct: 1559 ALD 1561
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 461 | |||
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 7e-11 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 3e-10 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 3e-10 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-10 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 3e-07 | |
| smart00179 | 39 | smart00179, EGF_CA, Calcium-binding EGF-like domai | 5e-07 | |
| cd00054 | 38 | cd00054, EGF_CA, Calcium-binding EGF-like domain, | 3e-06 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-06 | |
| pfam07645 | 42 | pfam07645, EGF_CA, Calcium-binding EGF domain | 2e-05 | |
| cd01475 | 224 | cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin | 5e-05 | |
| smart00181 | 35 | smart00181, EGF, Epidermal growth factor-like doma | 6e-05 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 7e-05 | |
| pfam12662 | 24 | pfam12662, cEGF, Complement Clr-like EGF-like | 2e-04 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 3e-04 | |
| cd00053 | 36 | cd00053, EGF, Epidermal growth factor domain, foun | 3e-04 | |
| pfam12947 | 36 | pfam12947, EGF_3, EGF domain | 4e-04 | |
| smart00192 | 33 | smart00192, LDLa, Low-density lipoprotein receptor | 0.001 | |
| cd00112 | 35 | cd00112, LDLa, Low Density Lipoprotein Receptor Cl | 0.002 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 0.003 | |
| pfam00057 | 37 | pfam00057, Ldl_recept_a, Low-density lipoprotein r | 0.004 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 7e-11
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR 183
++ SGL GLA DWI G +YW D L+ IEV + +GTNR
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-10
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 247
L+WTD I ++GS+R T+ S + WPNG+ +D
Sbjct: 3 LYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-10
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377
L+WTD I ++GS+R T+ S + WPNG+ +D
Sbjct: 3 LYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-10
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 361 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGR 402
T++S+ + PNGL +D R+Y+ D LD I+ N DGT R
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-07
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229
L + P G+ +D L+WTDWG IE +DG+NR
Sbjct: 2 TLLSSGLGHPNGLAVDWI--EGRLYWTDWG-LDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-07
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 70 DMNECEQPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTCK 109
D++EC C C NT GSY C C GY D C+
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39
|
Length = 39 |
| >gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-06
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 70 DMNECEQPGYCS--QMCTNTKGSYICSCNEGYVL 101
D++EC C C NT GSY CSC GY
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDC 264
T++S+ + PNGL +D R+Y+ D LD I+
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEV 35
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 70 DMNECEQPGY-CSQM--CTNTKGSYICSCNEGYVLEYDNHTC 108
D++EC + C C NT GS+ C C +GY D C
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42
|
Length = 42 |
| >gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 68 CQDMNEC-EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHT 107
C + C C Q+C +T GSY+C+C EGY L DN T
Sbjct: 184 CVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Length = 224 |
| >gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 6e-05
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 73 ECEQPGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTCK 109
EC G CS C NT GSY CSC GY + C+
Sbjct: 1 ECASGGPCSNGTCINTPGSYTCSCPPGYTG---DKRCE 35
|
Length = 35 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-05
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 14/54 (25%)
Query: 308 ILVSGQLY--EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR 359
L+S L LA+D G LY WTDWG IE +DG+NR
Sbjct: 2 TLLSSGLGHPNGLAVDWIEGRLY-----------WTDWG-LDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 90 SYICSCNEGYVLEYDNHTCKAIN 112
SY CSC GY L D TC+ I+
Sbjct: 1 SYTCSCPPGYQLSGDGRTCEDID 23
|
cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteristic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue. Length = 24 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 161 GHIYWLDSRL-NRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
G +YW DS L I V D NG++R L +++ P G+ +DP
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 3e-04
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 73 ECEQPGYCS--QMCTNTKGSYICSCNEGYVLEYDNHTC 108
EC CS C NT GSY C C GY + +C
Sbjct: 1 ECAASNPCSNGGTCVNTPGSYRCVCPPGYTG---DRSC 35
|
Length = 36 |
| >gnl|CDD|205157 pfam12947, EGF_3, EGF domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 84 CTNTKGSYICSCNEGYVLEYDNHTC 108
CTNT GS+ C+C GY D TC
Sbjct: 14 CTNTGGSFTCTCKSGY--TGDGVTC 36
|
This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36 |
| >gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
RC+ + VCDG DC +G+DE
Sbjct: 13 RCIPSSWVCDGVDDCGDGSDE 33
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33 |
| >gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.002
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
RC+ + VCDG+ DC +G+DE
Sbjct: 12 RCIPSSWVCDGEDDCGDGSDE 32
|
Length = 35 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALD 321
+LYW D + + I A+++GS+ L S L +A+D
Sbjct: 1 GRLYWTD---SSLRASISVADLNGSDRRTLFSEDLQWPNGIAVD 41
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.004
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C+ ++ VCDG DC +G+DE
Sbjct: 14 ECIPMSWVCDGDPDCEDGSDE 34
|
Length = 37 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG1215|consensus | 877 | 99.97 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.9 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.86 | |
| KOG1215|consensus | 877 | 99.84 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.78 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.73 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.57 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.45 | |
| KOG4659|consensus | 1899 | 99.39 | ||
| KOG4659|consensus | 1899 | 99.38 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.38 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 99.36 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.31 | |
| KOG1520|consensus | 376 | 99.25 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.24 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.21 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 99.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.11 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.1 | |
| KOG1520|consensus | 376 | 99.1 | ||
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 99.09 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.08 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.06 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 99.0 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.98 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.93 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.88 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.86 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.82 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.78 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.73 | |
| KOG4499|consensus | 310 | 98.71 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.6 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.58 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 98.55 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.54 | |
| PF14670 | 36 | FXa_inhibition: Coagulation Factor Xa inhibitory s | 98.53 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.52 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.5 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.48 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.43 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.42 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.42 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.41 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.38 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.36 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.33 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 98.3 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 98.24 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.22 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.2 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.2 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 98.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.17 | |
| KOG1219|consensus | 4289 | 98.12 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.11 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.11 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.1 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.06 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 98.03 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.0 | |
| PF07645 | 42 | EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 | 98.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.99 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.95 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.94 | |
| cd00112 | 35 | LDLa Low Density Lipoprotein Receptor Class A doma | 97.94 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.94 | |
| PF00057 | 37 | Ldl_recept_a: Low-density lipoprotein receptor dom | 97.93 | |
| PF12662 | 24 | cEGF: Complement Clr-like EGF-like | 97.93 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.89 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.8 | |
| KOG4499|consensus | 310 | 97.75 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.73 | |
| smart00192 | 33 | LDLa Low-density lipoprotein receptor domain class | 97.68 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.58 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.54 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.46 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.46 | |
| KOG1219|consensus | 4289 | 97.43 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.38 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 97.34 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 97.19 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.15 | |
| KOG4260|consensus | 350 | 97.09 | ||
| KOG4289|consensus | 2531 | 97.02 | ||
| KOG4260|consensus | 350 | 96.99 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.84 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 96.84 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.82 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.55 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.53 | |
| KOG0285|consensus | 460 | 96.49 | ||
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 96.35 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.32 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 96.26 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 96.23 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.16 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.12 | |
| smart00179 | 39 | EGF_CA Calcium-binding EGF-like domain. | 96.1 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.08 | |
| KOG4289|consensus | 2531 | 95.96 | ||
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 95.83 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.53 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 95.46 | |
| KOG4649|consensus | 354 | 95.37 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.01 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 94.83 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 94.64 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 94.6 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.16 | |
| PF12947 | 36 | EGF_3: EGF domain; InterPro: IPR024731 This entry | 93.97 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 93.64 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 93.57 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.38 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.29 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 93.15 | |
| smart00181 | 35 | EGF Epidermal growth factor-like domain. | 92.67 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.56 | |
| KOG0291|consensus | 893 | 92.54 | ||
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 92.41 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.27 | |
| cd00054 | 38 | EGF_CA Calcium-binding EGF-like domain, present in | 92.23 | |
| KOG0279|consensus | 315 | 92.2 | ||
| COG4247 | 364 | Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph | 91.96 | |
| KOG0291|consensus | 893 | 91.86 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.81 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 91.72 | |
| PF06247 | 197 | Plasmod_Pvs28: Plasmodium ookinete surface protein | 91.54 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 91.02 | |
| KOG1217|consensus | 487 | 90.4 | ||
| PF12999 | 176 | PRKCSH-like: Glucosidase II beta subunit-like | 90.11 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.1 | |
| KOG1217|consensus | 487 | 89.35 | ||
| KOG0318|consensus | 603 | 88.8 | ||
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 88.29 | |
| cd00053 | 36 | EGF Epidermal growth factor domain, found in epide | 87.93 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 87.41 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 86.77 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 86.74 | |
| PF09064 | 34 | Tme5_EGF_like: Thrombomodulin like fifth domain, E | 86.35 | |
| KOG4441|consensus | 571 | 86.15 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.72 | |
| PF00008 | 32 | EGF: EGF-like domain This is a sub-family of the P | 85.38 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 84.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 84.55 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 82.63 | |
| KOG4328|consensus | 498 | 82.18 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 81.53 | |
| KOG1446|consensus | 311 | 81.48 | ||
| KOG0292|consensus | 1202 | 81.46 | ||
| PF12661 | 13 | hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E | 81.25 | |
| KOG0279|consensus | 315 | 80.58 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 80.05 |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=354.43 Aligned_cols=223 Identities=28% Similarity=0.447 Sum_probs=190.5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEE-----EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRI-----VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~-----~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~ 234 (461)
+..|.++. ..+|....++|.... +++.-.-.-|.||++|-... ++||+|+ ....|.|++|.|...++++.
T Consensus 990 gt~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~--mvyWtDv-~g~SI~rasL~G~Ep~ti~n 1064 (1289)
T KOG1214|consen 990 GTFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRER--MVYWTDV-AGRSISRASLEGAEPETIVN 1064 (1289)
T ss_pred cceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeecccccc--eEEEeec-CCCccccccccCCCCceeec
Confidence 34555544 478999999886532 22222223489999999977 9999994 55799999999999999999
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
.++.+|.|||||+..+++||+|+..+ +|+++.+||+.+++|+...+
T Consensus 1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD----------------------------------~IevA~LdG~~rkvLf~tdL 1110 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLD----------------------------------KIEVALLDGSERKVLFYTDL 1110 (1289)
T ss_pred ccCCCccceeeeeccceeeeeccccc----------------------------------hhheeecCCceeeEEEeecc
Confidence 99999999999999999999999885 58899999999999999988
Q ss_pred --eeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 315 --YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 315 --p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
|++|++|+.+|+|||| ||. ++++|++..|||+++++|+.+++..|+||++|+..+.|-|+|+++++
T Consensus 1111 VNPR~iv~D~~rgnLYwt-----------DWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~r 1179 (1289)
T KOG1214|consen 1111 VNPRAIVVDPIRGNLYWT-----------DWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKR 1179 (1289)
T ss_pred cCcceEEeecccCceeec-----------cccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcc
Confidence 9999999999987765 665 78999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
++.+..+ |..++++.++. .+||+|+-+++.+|||||+.+.|
T Consensus 1180 leC~~p~--g~gRR~i~~~L------------qYPF~itsy~~~fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1180 LECTLPD--GTGRRVIQNNL------------QYPFSITSYADHFYHTDWKRNGV 1220 (1289)
T ss_pred eeEecCC--CCcchhhhhcc------------cCceeeeeccccceeeccccCce
Confidence 9999995 44445555432 35899999999999999999766
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=303.45 Aligned_cols=234 Identities=22% Similarity=0.361 Sum_probs=209.2
Q ss_pred ceeEEEeccccceeecccccCcccc-cceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCC
Q psy17325 115 AAFLIISNRHSILVADLEEKGKDHR-AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ 193 (461)
Q Consensus 115 ~~~l~~~~~~~I~~~~l~~~~~~~s-~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~ 193 (461)
..+|+++...+|....+++..+... ....+.---+-|.||++|-..+.|||+|.....|.++.|+|...++++...+..
T Consensus 990 gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~S 1069 (1289)
T KOG1214|consen 990 GTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLIS 1069 (1289)
T ss_pred cceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCC
Confidence 4589999988998888887766542 222222222468899999999999999999999999999999999999999999
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
|.|||+|...+ .|||+| ....+|+.+.|||+.+++|+.+++..|.+|++|+..++|||+|...+.
T Consensus 1070 PEGiAVDh~~R--n~ywtD-S~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRen------------ 1134 (1289)
T KOG1214|consen 1070 PEGIAVDHIRR--NMYWTD-SVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNREN------------ 1134 (1289)
T ss_pred ccceeeeeccc--eeeeec-cccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccC------------
Confidence 99999999977 999999 667899999999999999999999999999999999999999987654
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEE
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~ 351 (461)
.+|++..+||+++++++.+.+ |+||.+||..+.|-|.|.+ +.|++-
T Consensus 1135 --------------------PkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAG------------t~rleC 1182 (1289)
T KOG1214|consen 1135 --------------------PKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAG------------TKRLEC 1182 (1289)
T ss_pred --------------------CcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecC------------CcceeE
Confidence 579999999999999999887 9999999999999999988 999999
Q ss_pred EeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 352 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 352 ~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
...+|..|+++. .+|++|.+|+- ..+.+||+||+.+.|.++++-
T Consensus 1183 ~~p~g~gRR~i~-~~LqYPF~its--y~~~fY~TDWk~n~vvsv~~~ 1226 (1289)
T KOG1214|consen 1183 TLPDGTGRRVIQ-NNLQYPFSITS--YADHFYHTDWKRNGVVSVNKH 1226 (1289)
T ss_pred ecCCCCcchhhh-hcccCceeeee--ccccceeeccccCceEEeecc
Confidence 999999999999 99999999999 466699999999999999994
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=279.49 Aligned_cols=333 Identities=33% Similarity=0.646 Sum_probs=269.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC----------------------------CCCCCCcccCCCCCCCCCceeCCCCceE
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG----------------------------PGCDLAECKHKFGLCSNTCHPTPLGALC 53 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~----------------------------~~C~~~~C~~~~~~C~~~C~~~~~~~~C 53 (461)
++.|++..++|++..||++|+||. ..|...+|......|.+.|........|
T Consensus 269 ~~~~~~~~~~~~g~~d~pdg~de~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 348 (877)
T KOG1215|consen 269 DGDCSDRQKLCDGDLDCPDGLDEDYCKKKLYWSMNVDGSGRRILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRC 348 (877)
T ss_pred CCCCccceEEecCccCCCCcccccccccceeeeeecccCCceeeecccCccccccccccchhhcccccCCCCccccCCcc
Confidence 457899999999999999999985 2334566666667788888888888999
Q ss_pred eCCCCCeecCCCCceecCcceecCCcccCcee-eccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeeccc
Q psy17325 54 TCPPGEILSNDSVTCQDMNECEQPGYCSQMCT-NTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLE 132 (461)
Q Consensus 54 ~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~-~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~ 132 (461)
.|..++.+...... ....++..++.|+|.|. +.++.+.|.|..||.+..+. |.....+..+++++++..++.+.++
T Consensus 349 ~~~~~~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~ 425 (877)
T KOG1215|consen 349 DCMGAKVLPLGART-DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLD 425 (877)
T ss_pred cCCccceecccccc-cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecccC
Confidence 99999987655555 22344446789999998 56899999999999988766 7776667889999999888877554
Q ss_pred ccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 133 ~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
.... ...+. ....+..+..|..++ .+||+|
T Consensus 426 ~~~~-----------------------------------------------~~p~~-~~~~~~~~d~d~~~~--~i~~~d 455 (877)
T KOG1215|consen 426 CSDV-----------------------------------------------SRPLE-GIKNAVALDFDVLNN--RIYWAD 455 (877)
T ss_pred CCcc-----------------------------------------------eEEcc-CCccceEEEEEecCC--EEEEEe
Confidence 2200 01111 113466777888877 999999
Q ss_pred cCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCc
Q psy17325 213 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGV 292 (461)
Q Consensus 213 ~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~ 292 (461)
....+|.++.++|.....+...+.-.|.+||+|+..+.+||+|....
T Consensus 456 -~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~-------------------------------- 502 (877)
T KOG1215|consen 456 -LSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNC-------------------------------- 502 (877)
T ss_pred -ccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCc--------------------------------
Confidence 55679999999998887777778889999999999999999999884
Q ss_pred ceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc
Q psy17325 293 PLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370 (461)
Q Consensus 293 ~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p 370 (461)
.|.+..++|..+.+++...+ |+.+++||..+ +|||+||+..++|.|+.|||+.+.+++..++.+|
T Consensus 503 --~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g-----------~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p 569 (877)
T KOG1215|consen 503 --LIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKG-----------LMFWTDWGQPPRIERASLDGSERAVLVTNGILWP 569 (877)
T ss_pred --eeEEEEccCCceeEEEecCCCCccceeeccccC-----------eeEEecCCCCchhhhhcCCCCCceEEEeCCccCC
Confidence 57788899999999998876 99999999877 6777888877799999999999999998889999
Q ss_pred eeEEEecCCCeEEEEcCCCC-eEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 371 NGLTLDIATRRVYFADSKLD-FIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~-~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+||++|..++++||+|.... .|++++. +|..+. +..... .++|++++++++++||+|+..+.+
T Consensus 570 ~glt~d~~~~~~yw~d~~~~~~i~~~~~--~g~~r~-~~~~~~----------~~~p~~~~~~~~~iyw~d~~~~~~ 633 (877)
T KOG1215|consen 570 NGLTIDYETDRLYWADAKLDYTIESANM--DGQNRR-VVDSED----------LPHPFGLSVFEDYIYWTDWSNRAI 633 (877)
T ss_pred CcceEEeecceeEEEcccCCcceeeeec--CCCceE-Eecccc----------CCCceEEEEecceeEEeeccccce
Confidence 99999999999999999999 7999999 677765 222111 135899999999999999999855
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-21 Score=210.10 Aligned_cols=265 Identities=18% Similarity=0.225 Sum_probs=182.9
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC-------------CCCCceeEEEcCCCCceEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD-------------NITQPRGMMLDPSPGTRWLF 209 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~-------------~~~~p~~ia~d~~~g~~~ly 209 (461)
++.+.+..|.++|+|..+++||++|..+++|.+.+++|.....+... .+..|.||++|+..+ .||
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn--~LY 639 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN--LLY 639 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC--EEE
Confidence 44667899999999998999999999999999999999876555431 256799999999877 999
Q ss_pred EeecCCCCcEEEEecCCCCcEEEEec----------------ccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 210 WTDWGENPRIERIGMDGSNRSTIIST----------------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 210 ~td~~~~~~I~~~~~dG~~~~~i~~~----------------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
++| ..+.+|.++++.+...+++... .+..|.++++|+.+++||++|...++|+..+
T Consensus 640 VaD-t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d------- 711 (1057)
T PLN02919 640 VAD-TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN------- 711 (1057)
T ss_pred EEe-CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE-------
Confidence 999 5667899998876555555321 1568999999998999999999887654322
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceE----EEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCC
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS----ILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENP 347 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~----~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~ 347 (461)
... +.+....-+|.... ......+ |.||+++|.++.||+++.. ++
T Consensus 712 -------------~~~----g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------------n~ 762 (1057)
T PLN02919 712 -------------ISD----GVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------------SS 762 (1057)
T ss_pred -------------CCC----CeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------------CC
Confidence 111 11222221221100 0001112 9999999998899999988 77
Q ss_pred ceEEEeecCCCeEEEee---------------------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 348 RIERIGMDGSNRSTIIS---------------------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~---------------------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
+|.+.++++.....+.. ..+..|.||++| .++.||++|..+++|.+++.+ ++....+
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~-tg~v~ti 840 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPA-TKRVTTL 840 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECC-CCeEEEE
Confidence 88888876543332220 135689999999 567899999999999999993 3333333
Q ss_pred EEccccceeecc-CCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 407 LIDLMVEFTNDL-MGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 407 ~~~~~~~~~~~~-~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
...+..+..... ....+..|.+|++. +|+||++|..+++||+
T Consensus 841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 332221111000 00113346777765 5789999999999864
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=165.57 Aligned_cols=228 Identities=22% Similarity=0.305 Sum_probs=166.8
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
|||+++|...+.|||+|...++|.+.++++.....+.... |.|++++...| .||+++ . ..+...++.....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g--~l~v~~-~--~~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDG--RLYVAD-S--GGIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTS--EEEEEE-T--TCEEEEETTTTEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCC--EEEEEE-c--CceEEEecCCCcEE
Confidence 7999999889999999999999999999998766544433 99999996557 899999 3 34555576665555
Q ss_pred EEEec-----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 231 TIIST-----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 231 ~i~~~-----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.+... ....|+++++|+ .++||+++.......... .+.|++...+|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~--------------------------~g~v~~~~~~~~- 125 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGID--------------------------PGSVYRIDPDGK- 125 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGG--------------------------SEEEEEEETTSE-
T ss_pred EEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccc--------------------------ccceEEECCCCe-
Confidence 55553 567899999997 577999987653221100 046888998844
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-----eEEEeeC--CCCCceeEEEec
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-----RSTIIST--KIYWPNGLTLDI 377 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-----~~~l~~~--~l~~p~glaiD~ 377 (461)
.+.+..... |+||+++|.++.||++++. ..+|++++++... ++++... ....|.||++|
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD- 192 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD- 192 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-
T ss_pred EEEEecCcccccceEECCcchheeecccc------------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc-
Confidence 444444322 9999999999999999998 8899999997432 3445432 22369999999
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee---eCCEEEEEeC
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL---ENGMLYYSTE 441 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~lYwtd~ 441 (461)
.+|+||+++...++|.+++. +|.....+....+ .|..+++ +.+.||+|..
T Consensus 193 ~~G~l~va~~~~~~I~~~~p--~G~~~~~i~~p~~------------~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDP--DGKLLREIELPVP------------RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTS-EEEEEETTTEEEEEET--TSCEEEEEE-SSS------------SEEEEEEESTTSSEEEEEEB
T ss_pred CCCCEEEEEcCCCEEEEECC--CccEEEEEcCCCC------------CEEEEEEECCCCCEEEEEeC
Confidence 68999999999999999999 6876555543322 2566766 4578999964
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=197.88 Aligned_cols=253 Identities=35% Similarity=0.645 Sum_probs=174.7
Q ss_pred CcccCCCCCCCCCce-eCCCCceEeCCCCCeecCCCCceecCc---cee---cCCcccCceeeccCCccccCCCCeeeeC
Q psy17325 31 AECKHKFGLCSNTCH-PTPLGALCTCPPGEILSNDSVTCQDMN---ECE---QPGYCSQMCTNTKGSYICSCNEGYVLEY 103 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~-~~~~~~~C~C~~G~~l~~~~~~C~d~~---eC~---~~~~C~~~C~~~~g~~~C~C~~g~~l~~ 103 (461)
+.|...++.|.+.|. +.++.+.|.|..||.+..++ |.... ++. ....+...+ ..+. ...+.+..
T Consensus 365 ~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~------~~~~-~~~~p~~~ 435 (877)
T KOG1215|consen 365 NPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRIS------LDCS-DVSRPLEG 435 (877)
T ss_pred CcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecc------cCCC-cceEEccC
Confidence 467777889999998 45899999999999886655 53322 111 011111111 1111 00011110
Q ss_pred CCCce-eeccccceeEEEec--cccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC
Q psy17325 104 DNHTC-KAINHSAAFLIISN--RHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180 (461)
Q Consensus 104 ~~~~C-~~~~~~~~~l~~~~--~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G 180 (461)
..... .+.+.....+..+. ...|......+.. ...++..|+..|+++|+||+.+++||+|.....|.+.+++|
T Consensus 436 ~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~----~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g 511 (877)
T KOG1215|consen 436 IKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS----ECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDG 511 (877)
T ss_pred CccceEEEEEecCCEEEEEeccCCeEeeeccCCCc----cceEeccCccccCcEEEEeccCCceecccCCceeEEEEccC
Confidence 00000 01111111222222 1222222222211 22356788899999999999999999999999999999999
Q ss_pred CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCc
Q psy17325 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260 (461)
Q Consensus 181 ~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~ 260 (461)
..+.+++...+..|+.+++||..| +|||+||+..++|.|+.|||+.+..++..++.+|+||++|...+++||+|....
T Consensus 512 ~~~~vl~~~~l~~~r~~~v~p~~g--~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~ 589 (877)
T KOG1215|consen 512 SSRKVLVSKDLDLPRSIAVDPEKG--LMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLD 589 (877)
T ss_pred CceeEEEecCCCCccceeeccccC--eeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCC
Confidence 998899888888999999999999 999999987779999999999999999999999999999999999999999885
Q ss_pred eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecC
Q psy17325 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 261 ~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~ 333 (461)
. .|..++.+|..++++....+ |.++++- .+++||++..
T Consensus 590 ~---------------------------------~i~~~~~~g~~r~~~~~~~~~~p~~~~~~--~~~iyw~d~~ 629 (877)
T KOG1215|consen 590 Y---------------------------------TIESANMDGQNRRVVDSEDLPHPFGLSVF--EDYIYWTDWS 629 (877)
T ss_pred c---------------------------------ceeeeecCCCceEEeccccCCCceEEEEe--cceeEEeecc
Confidence 2 48889999999984444444 6666654 5655554433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-17 Score=179.12 Aligned_cols=222 Identities=18% Similarity=0.283 Sum_probs=150.0
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC----------------CCCCceeEEEcCCCCceEEEEe
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD----------------NITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~----------------~~~~p~~ia~d~~~g~~~ly~t 211 (461)
+..|.||++|..++.|||+|..+++|.++++.+...+++... .+..|.+|++||..+ .||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--~LyVa 700 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--KVYIA 700 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC--eEEEE
Confidence 568999999988888999999999999999887766655321 156899999999888 99999
Q ss_pred ecCCCCcEEEEecCCCCcEEEEe--------------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccce
Q psy17325 212 DWGENPRIERIGMDGSNRSTIIS--------------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST 277 (461)
Q Consensus 212 d~~~~~~I~~~~~dG~~~~~i~~--------------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~ 277 (461)
| ..+.+|++.+..+....++.. ..+..|.||++++.++.||++|...++|+..+.+...
T Consensus 701 d-~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~------ 773 (1057)
T PLN02919 701 M-AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG------ 773 (1057)
T ss_pred E-CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc------
Confidence 9 556788888875433322211 1356899999999888899999998766543321100
Q ss_pred eeeEEEEEecCCCCcceeeeEE-eCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC
Q psy17325 278 IFRKLYWIDEGGNGVPLKIGKA-NMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG 356 (461)
Q Consensus 278 ~~~~~yw~d~~~~~~~~~I~~~-~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG 356 (461)
..+.-.+....+...... ..+|......+ ..|.+|++|+ +|.||+++.. +++|.+.+.++
T Consensus 774 ----~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l--~~P~Gvavd~-dG~LYVADs~------------N~rIrviD~~t 834 (1057)
T PLN02919 774 ----SRLLAGGDPTFSDNLFKFGDHDGVGSEVLL--QHPLGVLCAK-DGQIYVADSY------------NHKIKKLDPAT 834 (1057)
T ss_pred ----EEEEEecccccCcccccccCCCCchhhhhc--cCCceeeEeC-CCcEEEEECC------------CCEEEEEECCC
Confidence 000000000000000000 00111111100 1199999997 5679999988 88888888876
Q ss_pred CCeEEEee-------------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 357 SNRSTIIS-------------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 357 ~~~~~l~~-------------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.....+.. ..+..|.||++| .+++||++|..+++|..++++
T Consensus 835 g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 835 KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CeEEEEeccCCcCCCCCcccccccCCceEEEEe-CCCCEEEEECCCCEEEEEECC
Confidence 65554431 245689999999 567899999999999999994
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=143.05 Aligned_cols=194 Identities=25% Similarity=0.339 Sum_probs=137.0
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
|.|+++|+..| .|||+| ....+|++.+.++...+.+... .|.|++++...++||+++...
T Consensus 2 ~Egp~~d~~~g--~l~~~D-~~~~~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~~~~-------------- 61 (246)
T PF08450_consen 2 GEGPVWDPRDG--RLYWVD-IPGGRIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVADSGG-------------- 61 (246)
T ss_dssp EEEEEEETTTT--EEEEEE-TTTTEEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEETTC--------------
T ss_pred CcceEEECCCC--EEEEEE-cCCCEEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEEcCc--------------
Confidence 68999999888 999999 5568999999998655443322 399999997679999999765
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC-----Ce--eeeEEEeccCCeEEEeecCceeeEEEeecCCC
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG-----QL--YEALALDLENGMLYYSTLKCTRWLFWTDWGEN 346 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~-----~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~ 346 (461)
+.+.++.....+++... .. |+++++|+ .|+||+++.. .......
T Consensus 62 ----------------------~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~------~~~~~~~ 112 (246)
T PF08450_consen 62 ----------------------IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSG------GGGASGI 112 (246)
T ss_dssp ----------------------EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEEC------CBCTTCG
T ss_pred ----------------------eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecC------CCccccc
Confidence 33346555555555543 22 99999998 4679999876 0000011
Q ss_pred --CceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCC---eEEEEEccccceeeccCCC
Q psy17325 347 --PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGR---QQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 347 --~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~---~~~~~~~~~~~~~~~~~~~ 421 (461)
++|+|.+.+|+ .+.+. ..+..|+||+++++++.||++|+..++|++++++.++. .+.++.+.....
T Consensus 113 ~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------- 183 (246)
T PF08450_consen 113 DPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP------- 183 (246)
T ss_dssp GSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------
T ss_pred cccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-------
Confidence 67999999944 44444 67999999999999999999999999999999975555 223333222211
Q ss_pred CCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 422 NGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 422 ~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
-.|-+++++ +|+||++.+.++.|.
T Consensus 184 --g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 184 --GYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp --CEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred --cCCCcceEcCCCCEEEEEcCCCEEE
Confidence 015566665 689999999887763
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-12 Score=123.17 Aligned_cols=239 Identities=19% Similarity=0.258 Sum_probs=162.2
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
+...+....||..++...+.|||+|...++|.+.++. |..+.......+ +.++.+|.. | .|..++. .+.+
T Consensus 19 ~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~--~~~~~~d~~-g--~Lv~~~~----g~~~ 89 (307)
T COG3386 19 LLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGF--SSGALIDAG-G--RLIACEH----GVRL 89 (307)
T ss_pred EeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCc--ccceeecCC-C--eEEEEcc----ccEE
Confidence 3455666788999999999999999999999999996 544444333333 777788864 5 6877762 3444
Q ss_pred EecC-CCCcEEEEec----ccccceeEEeeccCCeeEEecCCC---ceeeecccceeeeeccceeeeEEEEEecCCCCcc
Q psy17325 222 IGMD-GSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKL---DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293 (461)
Q Consensus 222 ~~~d-G~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~---~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~ 293 (461)
.+.+ |..++.+... ....||.+.+|+ .+++|+++... +.-. ..-.
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~--------------------------~~~~ 142 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSE--------------------------ERPT 142 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccc--------------------------cCCc
Confidence 4433 3332333322 456899999997 59999999872 1100 0001
Q ss_pred eeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec---C----CCeEEEeeC
Q psy17325 294 LKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD---G----SNRSTIIST 365 (461)
Q Consensus 294 ~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d---G----~~~~~l~~~ 365 (461)
+.+++++++|...+.+...-. |+||+++|.+..||++|+. ..+|+|..++ | ....+....
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d~~~g~~~~~~~~~~~~~ 210 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLDPATGPIGGRRGFVDFDE 210 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecCcccCccCCcceEEEccC
Confidence 468888886665555554233 9999999999999999998 7788888776 2 222233323
Q ss_pred CCCCceeEEEecCCCeEE-EEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee---CCEEEEEeC
Q psy17325 366 KIYWPNGLTLDIATRRVY-FADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE---NGMLYYSTE 441 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly-~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~lYwtd~ 441 (461)
.-..|.|+++| .++.|| .+-++.+.|.+++. +|.....+.-.... +..+++- .+.||+|-.
T Consensus 211 ~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~p--dG~l~~~i~lP~~~------------~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 211 EPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNP--DGKLLGEIKLPVKR------------PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCCceEEe-CCCCEEEecccCCceEEEECC--CCcEEEEEECCCCC------------CccceEeCCCcCEEEEEec
Confidence 45789999999 889999 55555569999999 68876655443222 2344443 378999987
Q ss_pred CCc
Q psy17325 442 GAE 444 (461)
Q Consensus 442 ~~~ 444 (461)
..+
T Consensus 276 ~~~ 278 (307)
T COG3386 276 RSG 278 (307)
T ss_pred CCC
Confidence 774
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-12 Score=122.73 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=158.5
Q ss_pred CccceeeeeeeecCCeEEEEeC---CCCeEEEEeCCCC--cEEEEe--cCCCCCceeEEEcCCCCceEEEEeecCCCCcE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDS---RLNRIEVCDENGT--NRIVLA--KDNITQPRGMMLDPSPGTRWLFWTDWGENPRI 219 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~---~~~~I~~~~~~G~--~~~~l~--~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I 219 (461)
....|.-|++++.++.||.++. ..+.|.....+.. ..+.+- ...-..|..|++|+..+ +||++..+ ...|
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~-~g~v 111 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYG-GGSV 111 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETT-TTEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEcc-CCeE
Confidence 4568999999999999999998 4788877765543 222221 11235799999999988 99999944 4567
Q ss_pred EEEecC--CCCcEE--EEe----------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEE
Q psy17325 220 ERIGMD--GSNRST--IIS----------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI 285 (461)
Q Consensus 220 ~~~~~d--G~~~~~--i~~----------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~ 285 (461)
....++ |..... ++. ....+|..+.+++.++.||++|...++|.
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~---------------------- 169 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY---------------------- 169 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE----------------------
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE----------------------
Confidence 666665 433222 221 12346889999999999999999987653
Q ss_pred ecCCCCcceeeeEEeCCCCc--eE---EE-EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-C
Q psy17325 286 DEGGNGVPLKIGKANMDGSN--AS---IL-VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-S 357 (461)
Q Consensus 286 d~~~~~~~~~I~~~~~~g~~--~~---~l-~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~ 357 (461)
+.+++... .. .+ +..+. |+.|+++|.++++|++... ++.|...+++. .
T Consensus 170 ------------~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~------------s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 170 ------------VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL------------SNTVSVFDYDPSD 225 (345)
T ss_dssp ------------EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT------------TTEEEEEEEETTT
T ss_pred ------------EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC------------CCcEEEEeecccC
Confidence 33333222 11 11 11222 9999999999999999877 67777777762 2
Q ss_pred -CeEEE--ee------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCC-CCeEEEEEccccceeeccCCCCCcceE
Q psy17325 358 -NRSTI--IS------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGT-GRQQVILIDLMVEFTNDLMGDNGVPAL 427 (461)
Q Consensus 358 -~~~~l--~~------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (461)
..+.+ +. ..-..|.+|++++++++||+++.+.+.|..+++|.. |....+-.-...+. .|..+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--------~Pr~~ 297 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--------FPRHF 297 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--------SEEEE
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--------CccEE
Confidence 11111 11 112379999999999999999999999999999544 44332211111111 12244
Q ss_pred EEeeeCCEEEEEeCCCceee
Q psy17325 428 ALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 428 ~l~~~~~~lYwtd~~~~~i~ 447 (461)
+++.++.+||+++++++.|.
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEecCCCeEE
Confidence 55558899999999998774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-11 Score=119.93 Aligned_cols=243 Identities=12% Similarity=0.113 Sum_probs=158.9
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCC--CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN--GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD- 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~--G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d- 225 (461)
..|..+++++.++.||++....+.|...+.+ |+....-.......|..|+++|..+ +||.+... ...|...+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~--~l~v~~~~-~~~v~v~~~~~ 111 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGR--FLFSASYN-ANCVSVSPLDK 111 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCC--EEEEEEcC-CCeEEEEEECC
Confidence 4688899999889999998888889777765 3321111111224799999999977 99999854 4566666664
Q ss_pred -CCCcEEEE-ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC-
Q psy17325 226 -GSNRSTII-STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD- 302 (461)
Q Consensus 226 -G~~~~~i~-~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~- 302 (461)
|...+.+. ......|.++++++.++.||+++...+.| .+.+++
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v----------------------------------~v~d~~~ 157 (330)
T PRK11028 112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRI----------------------------------RLFTLSD 157 (330)
T ss_pred CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEE----------------------------------EEEEECC
Confidence 43222221 12345799999999999999999887654 334333
Q ss_pred -CCce----E-EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC--CCeEEEee--------C
Q psy17325 303 -GSNA----S-ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG--SNRSTIIS--------T 365 (461)
Q Consensus 303 -g~~~----~-~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG--~~~~~l~~--------~ 365 (461)
|... . .-...+. |+.++++|.+++||+++.. .+.|...+++. ...+.+.. .
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~------------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL------------NSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC------------CCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 2111 0 0111122 9999999999999999876 55666666542 11111110 1
Q ss_pred CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCce
Q psy17325 366 KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF 445 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~ 445 (461)
.-.+|.+|++++.+++||+++...+.|..++++.++....++.....+. .+..+.+..++.+||++.+++++
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--------~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--------QPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--------cCCceEECCCCCEEEEEEccCCc
Confidence 2236678999999999999999899999999865554433332211111 12356777788999999998887
Q ss_pred eec
Q psy17325 446 LKT 448 (461)
Q Consensus 446 i~~ 448 (461)
|.+
T Consensus 298 v~v 300 (330)
T PRK11028 298 ISV 300 (330)
T ss_pred EEE
Confidence 743
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-10 Score=114.83 Aligned_cols=208 Identities=16% Similarity=0.216 Sum_probs=145.2
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCC--CCcEEE--Ee----------cCCCCCceeEEEcCCCCceEEEEee
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN--GTNRIV--LA----------KDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~--G~~~~~--l~----------~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
.-..|..+++|+.++.||+++...+.|.+.+++ |..... +. .....+|..+.++|..+ +||++|
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~--~v~v~d 162 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR--FVYVPD 162 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS--EEEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC--EEEEEe
Confidence 335788999999999999999999999888765 444332 22 12346789999999977 999999
Q ss_pred cCCCCcEEEEecCCCC--cEE---EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 213 WGENPRIERIGMDGSN--RST---IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 213 ~~~~~~I~~~~~dG~~--~~~---i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
.+. .+|...+++... ... +....-..|..|++++.++++|++....+.|.
T Consensus 163 lG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~------------------------ 217 (345)
T PF10282_consen 163 LGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS------------------------ 217 (345)
T ss_dssp TTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEE------------------------
T ss_pred cCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEE------------------------
Confidence 654 689998887654 221 21223457999999999999999998886543
Q ss_pred CCCCcceeeeEEeCC---CCceE--EEEeC------C-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec
Q psy17325 288 GGNGVPLKIGKANMD---GSNAS--ILVSG------Q-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD 355 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~---g~~~~--~l~~~------~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d 355 (461)
+.+++ |.... .+-.. . .|.+|+++|.+++||+++.+ ...|...++|
T Consensus 218 ----------v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------------~~sI~vf~~d 275 (345)
T PF10282_consen 218 ----------VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------------SNSISVFDLD 275 (345)
T ss_dssp ----------EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------------TTEEEEEEEC
T ss_pred ----------EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------------CCEEEEEEEe
Confidence 22222 21111 11110 1 28899999999999999888 7788888875
Q ss_pred CC--CeEE--EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 356 GS--NRST--IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 356 G~--~~~~--l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
.. ..+. .+.....+|.++++|+++++||+++...+.|..++.|.+...
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 43 2222 233456779999999999999999999999999988644433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=114.23 Aligned_cols=237 Identities=15% Similarity=0.195 Sum_probs=147.9
Q ss_pred CeEEEEeCCCCeEEEEeCC--CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe--cc
Q psy17325 161 GHIYWLDSRLNRIEVCDEN--GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS--TK 236 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~--G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--~~ 236 (461)
..+|+++...+.|.+.+++ |+....-.......|..|+++|... +||++.. ....|...+.++......+. ..
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~--~lyv~~~-~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR--HLYVGVR-PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC--EEEEEEC-CCCcEEEEEECCCCceEEeeeecC
Confidence 3589999989999999875 4322111112235799999999877 9999874 45677666665332222221 12
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC--CCCceEEEE--eC
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM--DGSNASILV--SG 312 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~--~g~~~~~l~--~~ 312 (461)
...|.+|++++.++.||.+....+. |.+.++ +|...+.+. ..
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~----------------------------------v~v~~~~~~g~~~~~~~~~~~ 124 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANC----------------------------------VSVSPLDKDGIPVAPIQIIEG 124 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCe----------------------------------EEEEEECCCCCCCCceeeccC
Confidence 3479999999999999999876543 333333 343222221 11
Q ss_pred Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe------EEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 313 QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR------STIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 313 ~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~------~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
.. |++++++|.++.||+++.. .++|...+++.... ..+....-..|.++++++++++||++
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 22 8999999999999998877 66777776653211 11111223569999999999999999
Q ss_pred cCCCCeEEEEEecC-CCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 386 DSKLDFIDFCNYDG-TGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 386 d~~~~~I~~~~~~g-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
+...+.|..++++. +|.. ..+... ........+...+..+.+++++.+||++++.++.|.+
T Consensus 193 ~~~~~~v~v~~~~~~~~~~-~~~~~~-~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v 254 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEI-ECVQTL-DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISV 254 (330)
T ss_pred ecCCCEEEEEEEeCCCCCE-EEEEEE-ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEE
Confidence 99999999999952 2332 222111 1111011111111124566778899999988887743
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-11 Score=128.03 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=146.5
Q ss_pred EEEeccccceeecccccCcccccceEEEcC---ccceeeeeeeecCCeEEEEeCCCCeEEEEe-CCCCc----EEEEec-
Q psy17325 118 LIISNRHSILVADLEEKGKDHRAQDIVVSG---LDLVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTN----RIVLAK- 188 (461)
Q Consensus 118 l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g---~~~p~~iavd~~~~~ly~~d~~~~~I~~~~-~~G~~----~~~l~~- 188 (461)
|++...+.|+++.-+++- ..++.-+ .++-.-||+|++.+.||++|+...+|.++. +.++. .+++..
T Consensus 378 l~VGDfNyIRRI~~dg~v-----~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 378 LIVGDFNYIRRISQDGQV-----STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred EEEccchheeeecCCCce-----EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 455555666666443322 2334333 345567999999999999999999998865 44422 222221
Q ss_pred -------------------CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe---------------
Q psy17325 189 -------------------DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS--------------- 234 (461)
Q Consensus 189 -------------------~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--------------- 234 (461)
..+..|+|||+|.. | .||++| + ..|.+++.+|--.+.+.+
T Consensus 453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~-g--~lYfaD-~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~k 526 (1899)
T KOG4659|consen 453 GEVCLPADESCGDGALAQDAQLIFPKGIAFDKM-G--NLYFAD-G--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITK 526 (1899)
T ss_pred CcCccccccccCcchhcccceeccCCceeEccC-C--cEEEec-c--cEEEEeccCceEEEeccCCCCccCccccccccc
Confidence 13567999999964 6 799999 4 478888887754433222
Q ss_pred ---cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE---
Q psy17325 235 ---TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI--- 308 (461)
Q Consensus 235 ---~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~--- 308 (461)
-.+.||..|||||-.+.||+.|... |.+++.++..+-+
T Consensus 527 l~~~~leWPT~LaV~Pmdnsl~Vld~nv------------------------------------vlrit~~~rV~Ii~Gr 570 (1899)
T KOG4659|consen 527 LVDLQLEWPTSLAVDPMDNSLLVLDTNV------------------------------------VLRITVVHRVRIILGR 570 (1899)
T ss_pred hhheeeecccceeecCCCCeEEEeecce------------------------------------EEEEccCccEEEEcCC
Confidence 2567999999999999999999753 5555555544311
Q ss_pred ----------------EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe-------
Q psy17325 309 ----------------LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII------- 363 (461)
Q Consensus 309 ----------------l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~------- 363 (461)
.....+ +++||+.+ .|.||++++. -..-++|.+..-||+ ...|.
T Consensus 571 P~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G~lyvaEsD---------~rriNrvr~~~tdg~-i~ilaGa~S~C~ 639 (1899)
T KOG4659|consen 571 PTHCDLANATSSASKLADHRTLLIQRDIAVGT-DGALYVAESD---------GRRINRVRKLSTDGT-ISILAGAKSPCS 639 (1899)
T ss_pred ccccccCCCchhhhhhhhhhhhhhhhceeecC-CceEEEEecc---------chhhhheEEeccCce-EEEecCCCCCCC
Confidence 111111 88999995 7899999876 111233444444552 12221
Q ss_pred ------------------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 364 ------------------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 364 ------------------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
...+..|.+|||. .++.||++|.++-+|..+..
T Consensus 640 C~~~~~cdcfs~~~~~At~A~lnsp~alaVs-Pdg~v~IAD~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 640 CDVAACCDCFSLRDVAATQAKLNSPYALAVS-PDGDVIIADSGNSRIRKVSA 690 (1899)
T ss_pred cccccCCccccccchhhhccccCCcceEEEC-CCCcEEEecCCchhhhhhhh
Confidence 2358889999998 67999999999988887554
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-11 Score=125.54 Aligned_cols=242 Identities=18% Similarity=0.224 Sum_probs=159.3
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe-c
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG-M 224 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~-~ 224 (461)
|-.|..+|+. ..|.||+-|. +-|.++..+|...++|-- ....+-.-||++|..| .||++| ....+|+|++ +
T Consensus 364 L~aPvala~a-~DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdg--tlyvSd-p~s~qv~rv~sl 437 (1899)
T KOG4659|consen 364 LFAPVALAYA-PDGSLIVGDF--NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDG--TLYVSD-PLSKQVWRVSSL 437 (1899)
T ss_pred eeceeeEEEc-CCCcEEEccc--hheeeecCCCceEEEEEecCCCccceeEEEecCcCc--eEEecC-CCcceEEEeccC
Confidence 3357778886 4789999887 689999999998766532 2334456799999999 999999 5567888865 3
Q ss_pred CCCC----cEEEEe--------------------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeee
Q psy17325 225 DGSN----RSTIIS--------------------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280 (461)
Q Consensus 225 dG~~----~~~i~~--------------------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~ 280 (461)
.++. .+++.. ..+..|.||||| ..+.|||+|...
T Consensus 438 ~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t~--------------------- 495 (1899)
T KOG4659|consen 438 EPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGTR--------------------- 495 (1899)
T ss_pred CccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEecccE---------------------
Confidence 3321 122222 146689999999 589999999865
Q ss_pred EEEEEecCCCCcceeeeEEeCCCCceEEE------------------EeCCe--eeeEEEeccCCeEEEeecCceeeEEE
Q psy17325 281 KLYWIDEGGNGVPLKIGKANMDGSNASIL------------------VSGQL--YEALALDLENGMLYYSTLKCTRWLFW 340 (461)
Q Consensus 281 ~~yw~d~~~~~~~~~I~~~~~~g~~~~~l------------------~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~ 340 (461)
|.+++.+|-...++ .+-.+ |..+||||..+.||+-|..
T Consensus 496 ---------------IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------- 553 (1899)
T KOG4659|consen 496 ---------------IRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------- 553 (1899)
T ss_pred ---------------EEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc-------
Confidence 33333333222221 11122 9999999999999998765
Q ss_pred eecCCCCceEEEeecCCCeEEEe-------------------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCC
Q psy17325 341 TDWGENPRIERIGMDGSNRSTII-------------------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG 401 (461)
Q Consensus 341 ~d~~~~~~I~~~~~dG~~~~~l~-------------------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g 401 (461)
.|.|+..++.-+..+. ...+.-|..||+. ..|.||++++...+|.++..-++.
T Consensus 554 -------vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~lyvaEsD~rriNrvr~~~td 625 (1899)
T KOG4659|consen 554 -------VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGALYVAESDGRRINRVRKLSTD 625 (1899)
T ss_pred -------eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCceEEEEeccchhhhheEEeccC
Confidence 6777766665442211 1234567899997 779999999988777776653222
Q ss_pred CeEEEEEccccceeecc--------CCC-------CCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 402 RQQVILIDLMVEFTNDL--------MGD-------NGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 402 ~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
.. ..++.+.+...... .+. .+..|.+|++. +|.||++|.++-+||.
T Consensus 626 g~-i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~ 687 (1899)
T KOG4659|consen 626 GT-ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRK 687 (1899)
T ss_pred ce-EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhh
Confidence 22 33333332221111 111 14457777775 5899999999999964
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-10 Score=112.61 Aligned_cols=238 Identities=17% Similarity=0.198 Sum_probs=160.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|.+++++..+..+|+++...+.+..++.. ... +.........|.++++.+... ++|.+. .....|..+++....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~--~vyv~~-~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGN--KVYVTT-GDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCC--eEEEec-CCCCeEEEEcCcccc
Confidence 689999999899999999888888777766 333 332333336799999999988 999998 556788888855433
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
....+..+. .|.++++|+.++.+|+++..... ++|.+.+........
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~--------------------------------~~vsvid~~t~~~~~ 154 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGN--------------------------------NTVSVIDAATNKVTA 154 (381)
T ss_pred eeeEeeecc-CCceEEECCCCCEEEEEecccCC--------------------------------ceEEEEeCCCCeEEE
Confidence 322222222 89999999999999999995300 245555544333222
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE-E---eeCCCCCceeEEEecCCCeEE
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST-I---ISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~-l---~~~~l~~p~glaiD~~~~~ly 383 (461)
....+. |.+++++|.+.++|+++.. .+.|...+..+..... - .......|.++++++++.++|
T Consensus 155 ~~~vG~~P~~~a~~p~g~~vyv~~~~------------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 155 TIPVGNTPTGVAVDPDGNKVYVTNSD------------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred EEecCCCcceEEECCCCCeEEEEecC------------CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence 233233 9999999999999999966 4555555544443331 0 125567899999999999999
Q ss_pred EEcCCC--CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 384 FADSKL--DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 384 ~~d~~~--~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+++... +.+..++.. ++............ . +...++++.+..+|+++...+.+
T Consensus 223 V~~~~~~~~~v~~id~~-~~~v~~~~~~~~~~-~--------~~~v~~~p~g~~~yv~~~~~~~V 277 (381)
T COG3391 223 VANDGSGSNNVLKIDTA-TGNVTATDLPVGSG-A--------PRGVAVDPAGKAAYVANSQGGTV 277 (381)
T ss_pred EEeccCCCceEEEEeCC-CceEEEeccccccC-C--------CCceeECCCCCEEEEEecCCCeE
Confidence 999988 689999982 33322211111111 1 23456667777888876665444
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-10 Score=111.54 Aligned_cols=272 Identities=15% Similarity=0.159 Sum_probs=156.7
Q ss_pred CccceeeeeeeecCCeEEEEeCC-----------C-CeEEEEeC---CCCc-EEEEecCCCCCceeEEEcCCCCceEEEE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSR-----------L-NRIEVCDE---NGTN-RIVLAKDNITQPRGMMLDPSPGTRWLFW 210 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~-----------~-~~I~~~~~---~G~~-~~~l~~~~~~~p~~ia~d~~~g~~~ly~ 210 (461)
.+..|.+|++|. .++||+++.. . ++|.+... +|.. ...++...+..|.||++.+. | ||+
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G---lyV 86 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G---VYV 86 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C---EEE
Confidence 378999999996 6889999842 2 38877753 4554 34566677888999999863 3 999
Q ss_pred eecCCCCcEEEE-ecCCC-----CcEEEEec---c----cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccce
Q psy17325 211 TDWGENPRIERI-GMDGS-----NRSTIIST---K----IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST 277 (461)
Q Consensus 211 td~~~~~~I~~~-~~dG~-----~~~~i~~~---~----~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~ 277 (461)
++ .+.|.+. +.+|. .+++++.. . ...|++|++++ .++||+++.....-....
T Consensus 87 ~~---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~----------- 151 (367)
T TIGR02604 87 AT---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTR----------- 151 (367)
T ss_pred eC---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceecc-----------
Confidence 87 3468877 44442 33445442 1 23488999997 579999887532100000
Q ss_pred eeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCcee--eEEEeecCCC-------C
Q psy17325 278 IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTR--WLFWTDWGEN-------P 347 (461)
Q Consensus 278 ~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~--~l~~~d~~~~-------~ 347 (461)
.-..+.......+.|.+.+++|+..+++..... |.||++|+ .|.||++|..... .++....+.+ +
T Consensus 152 ----~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~ 226 (367)
T TIGR02604 152 ----PGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNG 226 (367)
T ss_pred ----CCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCC
Confidence 000000000111579999999998887765433 99999998 6889998875111 1111100000 0
Q ss_pred -ceEEEe------e---------cCCCeEEEeeCCCCCceeEEEe-------cCCCeEEEEcCCCCeEEEEEecCCCCeE
Q psy17325 348 -RIERIG------M---------DGSNRSTIISTKIYWPNGLTLD-------IATRRVYFADSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 348 -~I~~~~------~---------dG~~~~~l~~~~l~~p~glaiD-------~~~~~ly~~d~~~~~I~~~~~~g~g~~~ 404 (461)
...... . .+.............|.|+++- ...+.|++++...++|.++.++.+|...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~ 306 (367)
T TIGR02604 227 RRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGF 306 (367)
T ss_pred cccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCcc
Confidence 000000 0 0000001111122368999995 3468999999999999999996555432
Q ss_pred EEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 405 VILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
.. +....+.. ......|.++++. +|.||++||....|..
T Consensus 307 ~~--~~~~~l~~---~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~ 346 (367)
T TIGR02604 307 KG--ERPEFLRS---NDTWFRPVNVTVGPDGALYVSDWYDRGIEH 346 (367)
T ss_pred Ee--ecCceEec---CCCcccccceeECCCCCEEEEEeccCcccc
Confidence 21 10111110 0011235666664 5789999977766643
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-09 Score=108.88 Aligned_cols=200 Identities=18% Similarity=0.255 Sum_probs=148.8
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMD 225 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~d 225 (461)
+...|.++++...+.++|+++...+.|.+++.........+.-+ ..|.++++++..+ ++|+++.+ .+..+..++..
T Consensus 72 g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 72 GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred CCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCC--EEEEEecccCCceEEEEeCC
Confidence 44678999999999999999999999999996655543333323 2799999999988 99999954 35788887777
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.......+..+ ..|.++++|+.+.++|.++...+. |...+..+..
T Consensus 149 t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~----------------------------------v~vi~~~~~~ 193 (381)
T COG3391 149 TNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNT----------------------------------VSVIDTSGNS 193 (381)
T ss_pred CCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCe----------------------------------EEEEeCCCcc
Confidence 54433223222 268999999999999999966643 4555544443
Q ss_pred eEE------EEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCC--CceEEEeecCCCeEEE--eeCCCCCceeEEE
Q psy17325 306 ASI------LVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGEN--PRIERIGMDGSNRSTI--ISTKIYWPNGLTL 375 (461)
Q Consensus 306 ~~~------l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~--~~I~~~~~dG~~~~~l--~~~~l~~p~glai 375 (461)
... +.....|.++++++.+.++|+++.. + ..+.+.+......... ....+ +|.++++
T Consensus 194 v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~------------~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~ 260 (381)
T COG3391 194 VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG------------SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAV 260 (381)
T ss_pred eeccccccccccCCCCceEEECCCCCEEEEEecc------------CCCceEEEEeCCCceEEEeccccccC-CCCceeE
Confidence 332 1111229999999999999999876 3 5677766655544443 22455 8999999
Q ss_pred ecCCCeEEEEcCCCCeEEEEEe
Q psy17325 376 DIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 376 D~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++.+..+|+++...+.+..++.
T Consensus 261 ~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 261 DPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred CCCCCEEEEEecCCCeEEEEeC
Confidence 9999999999999999999998
|
|
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=110.26 Aligned_cols=140 Identities=21% Similarity=0.320 Sum_probs=113.9
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
..++|.||+++..++.||++|+..+ ++.+.+.|+..+.+.....
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlG-----------------------------------L~~V~p~g~~a~~l~~~~~G 157 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLG-----------------------------------LLKVGPEGGLAELLADEAEG 157 (376)
T ss_pred ccCCcceEEeccCCCeEEEEeccee-----------------------------------eEEECCCCCcceeccccccC
Confidence 3579999999999999999999874 6778888887665554332
Q ss_pred -----eeeEEEeccCCeEEEeecCc----eeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 315 -----YEALALDLENGMLYYSTLKC----TRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 315 -----p~~iavd~~~~~lY~t~~~~----~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
.+++.||+ +|.+||||+.. ..++|-.=.+ .++|+.|.+..-+..++|+ .+|..|+||++.+++..+.+
T Consensus 158 ~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 158 KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred eeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEE
Confidence 78999998 99999999884 3466655445 5789999999988888888 99999999999999999999
Q ss_pred EcCCCCeEEEEEecCCCCeE---EEEEccccce
Q psy17325 385 ADSKLDFIDFCNYDGTGRQQ---VILIDLMVEF 414 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~~---~~~~~~~~~~ 414 (461)
++....+|.+..+ .|... .++.++.++.
T Consensus 236 ~Et~~~ri~rywi--~g~k~gt~EvFa~~LPG~ 266 (376)
T KOG1520|consen 236 AETTTARIKRYWI--KGPKAGTSEVFAEGLPGY 266 (376)
T ss_pred EeeccceeeeeEe--cCCccCchhhHhhcCCCC
Confidence 9999999999999 56554 4455545544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-08 Score=93.43 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=163.8
Q ss_pred CccceeeeeeeecCCeEEEEeCC--CCeEEEEeCCCC-cEEEEecC---CCCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSR--LNRIEVCDENGT-NRIVLAKD---NITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~-~~~~l~~~---~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
.+..|.-|+++...+.||..... .+.|.....|.. -+..++.. .-..|.-+++|+.+. +||.+..+. ..|.
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~--~vf~AnY~~-g~v~ 114 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGR--FVFVANYHS-GSVS 114 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCC--EEEEEEccC-ceEE
Confidence 45689999999999999999877 777876665543 22233321 223468999999977 999998543 4554
Q ss_pred EE--ecCCCCcEEE---Eeccc--------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 221 RI--GMDGSNRSTI---ISTKI--------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 221 ~~--~~dG~~~~~i---~~~~~--------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
+. .-+|.-...+ ...+- .++...-+++.++.|+..|.+.++|.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~------------------------ 170 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF------------------------ 170 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE------------------------
Confidence 44 4456654332 11111 12556677888999999999998753
Q ss_pred CCCCcceeeeEEeCCCCce---EEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--CeEE
Q psy17325 288 GGNGVPLKIGKANMDGSNA---SILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--NRST 361 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~g~~~---~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~~~~ 361 (461)
+++.. +|... ...+..+. |+-|++.|..+..|+...- ++.|.....++. ..+.
T Consensus 171 --------~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL------------~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 171 --------LYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL------------NSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred --------EEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEEecc------------CCEEEEEEEcCCCceEEE
Confidence 33333 33321 11122233 9999999999999998776 666766666653 1111
Q ss_pred ---Ee-----eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEE-ccccceeeccCCCCCcceEEEeee
Q psy17325 362 ---II-----STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILI-DLMVEFTNDLMGDNGVPALALDLE 432 (461)
Q Consensus 362 ---l~-----~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 432 (461)
+. .++-.+...|.|.+++..||.++.+.+.|..+.+|.+|.....+. ....+. +|..|.|+..
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~--------~PR~F~i~~~ 301 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ--------FPRDFNINPS 301 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc--------CCccceeCCC
Confidence 21 134556778999999999999999999999999987776543332 222222 1346778888
Q ss_pred CCEEEEEeCCCceee
Q psy17325 433 NGMLYYSTEGAEFLK 447 (461)
Q Consensus 433 ~~~lYwtd~~~~~i~ 447 (461)
++.|+.+.+++..|.
T Consensus 302 g~~Liaa~q~sd~i~ 316 (346)
T COG2706 302 GRFLIAANQKSDNIT 316 (346)
T ss_pred CCEEEEEccCCCcEE
Confidence 999999999998763
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-09 Score=95.07 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=118.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC--C
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG--S 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG--~ 227 (461)
.+.||++++.++.||.+......|...+++|...+.+--.++..|.||++-.. + .+..++ ....++..+..+. .
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~-~--~~vl~~-Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGN-G--RYVLSE-ERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-ST-T--EEEEEE-TTTTEEEEEEE----T
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECC-C--EEEEEE-cCCCcEEEEEEecccc
Confidence 48999999999999999999999999999999877765566788999999643 4 455555 3456788777732 2
Q ss_pred Cc--EEE--Eec-----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 228 NR--STI--IST-----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 228 ~~--~~i--~~~-----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
.. ..+ +.- +-....|||.|+.+++||++..... ..|+.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P---------------------------------~~l~~ 145 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP---------------------------------KRLYE 145 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS---------------------------------EEEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC---------------------------------hhhEE
Confidence 21 111 111 1123589999999999999865542 12344
Q ss_pred EeC--CCCceEEEEeC-----Ce----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee---
Q psy17325 299 ANM--DGSNASILVSG-----QL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS--- 364 (461)
Q Consensus 299 ~~~--~g~~~~~l~~~-----~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~--- 364 (461)
.+. .+....+.... .. |.++++||..+.||+-... +.+|...+.+|.-...+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e------------s~~l~~~d~~G~~~~~~~L~~g 213 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE------------SRLLLELDRQGRVVSSLSLDRG 213 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT------------TTEEEEE-TT--EEEEEE-STT
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC------------CCeEEEECCCCCEEEEEEeCCc
Confidence 433 22222221111 11 9999999999999998766 7888888888876554431
Q ss_pred -----CCCCCceeEEEecCCCeEEEEcCCCCeEEEE
Q psy17325 365 -----TKIYWPNGLTLDIATRRVYFADSKLDFIDFC 395 (461)
Q Consensus 365 -----~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~ 395 (461)
..+.+|-|||+| .+|+||++..- +..+++
T Consensus 214 ~~gl~~~~~QpEGIa~d-~~G~LYIvsEp-Nlfy~f 247 (248)
T PF06977_consen 214 FHGLSKDIPQPEGIAFD-PDGNLYIVSEP-NLFYRF 247 (248)
T ss_dssp GGG-SS---SEEEEEE--TT--EEEEETT-TEEEEE
T ss_pred ccCcccccCCccEEEEC-CCCCEEEEcCC-ceEEEe
Confidence 347799999999 67999998653 455554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=98.47 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=149.8
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec------CCCCCceeEEEcCC---CCceEEEEeecC----
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK------DNITQPRGMMLDPS---PGTRWLFWTDWG---- 214 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~------~~~~~p~~ia~d~~---~g~~~ly~td~~---- 214 (461)
|..|.+|++.+. +.+|+++. .++|.+.+.+|.....+.. .....+.|||+||. ++ +||++-..
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~--~lYv~~t~~~~~ 76 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNG--YLYVYYTNADED 76 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC---EEEEEEEEE-TS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCC--EEEEEEEcccCC
Confidence 467999999975 89999999 8999999988876333211 23345789999994 46 77776521
Q ss_pred ---CCCcEEEEecCCC-----CcEEEEec------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeee
Q psy17325 215 ---ENPRIERIGMDGS-----NRSTIIST------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280 (461)
Q Consensus 215 ---~~~~I~~~~~dG~-----~~~~i~~~------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~ 280 (461)
...+|.|..++.. ..++|+.. ....-.+|++++ .++||++-.....-...
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~--------------- 140 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNA--------------- 140 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGG---------------
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccc---------------
Confidence 1157888888755 12334322 234456799998 55999986544220000
Q ss_pred EEEEEecCCCCcceeeeEEeCCCC-------------ceEEEEeCCe--eeeEEEeccCCeEEEeecCce--eeEEEeec
Q psy17325 281 KLYWIDEGGNGVPLKIGKANMDGS-------------NASILVSGQL--YEALALDLENGMLYYSTLKCT--RWLFWTDW 343 (461)
Q Consensus 281 ~~yw~d~~~~~~~~~I~~~~~~g~-------------~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~--~~l~~~d~ 343 (461)
+......++|.|++++|+ ..++. ..++ |.++++||..|.||.+|.+.. ..|.+...
T Consensus 141 ------~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~-A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 141 ------QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIY-AYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp ------CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEE-EE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ------cccccccceEEEecccCcCCCCCccccCCCceEEEE-EeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc
Confidence 000011257999999987 34444 4455 999999999899999987621 23333332
Q ss_pred CCC---CceE-----------EEe-ecCCCeEEEeeCCCCCceeEEEe------cCCCeEEEEcCCCCeEEEEEecCCCC
Q psy17325 344 GEN---PRIE-----------RIG-MDGSNRSTIISTKIYWPNGLTLD------IATRRVYFADSKLDFIDFCNYDGTGR 402 (461)
Q Consensus 344 ~~~---~~I~-----------~~~-~dG~~~~~l~~~~l~~p~glaiD------~~~~~ly~~d~~~~~I~~~~~~g~g~ 402 (461)
|.+ +..+ ... ..+...-++....-..|.|+++= ...+.+++++...++|.++.++.++.
T Consensus 214 G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~ 293 (331)
T PF07995_consen 214 GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS 293 (331)
T ss_dssp T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE
T ss_pred CCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC
Confidence 211 0010 000 01111111222334578999983 13678999999999999999953333
Q ss_pred eEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCcee
Q psy17325 403 QQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i 446 (461)
. .......... ...+.+|+.. +|.||+++..++.|
T Consensus 294 ~-~~~~~~~~~~--------~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 294 V-TEEEEFLGGF--------GGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp E-EEEEEECTTS--------SS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred c-cceEEccccC--------CCCceEEEEcCCCeEEEEECCCCeE
Confidence 1 1111111111 1135677764 58999998877655
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.7e-09 Score=98.22 Aligned_cols=160 Identities=21% Similarity=0.363 Sum_probs=112.4
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~ 269 (461)
......|.+.++..+ .|||+|+ ..++|.+.+......+++... -..++++.+| ..++|..++...
T Consensus 23 ~~~~gEgP~w~~~~~--~L~w~DI-~~~~i~r~~~~~g~~~~~~~p-~~~~~~~~~d-~~g~Lv~~~~g~---------- 87 (307)
T COG3386 23 GATLGEGPVWDPDRG--ALLWVDI-LGGRIHRLDPETGKKRVFPSP-GGFSSGALID-AGGRLIACEHGV---------- 87 (307)
T ss_pred ccccccCccCcCCCC--EEEEEeC-CCCeEEEecCCcCceEEEECC-CCcccceeec-CCCeEEEEcccc----------
Confidence 334577888999988 9999995 457999999974333334333 3348888888 477777777654
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCC-CCceEEEEeCC--e----eeeEEEeccCCeEEEeecCceeeEEEe-
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD-GSNASILVSGQ--L----YEALALDLENGMLYYSTLKCTRWLFWT- 341 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~-g~~~~~l~~~~--~----p~~iavd~~~~~lY~t~~~~~~~l~~~- 341 (461)
.+..++ |..++.+.... . |+...+||. |.+|+++.. + ++
T Consensus 88 ---------------------------~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~---~--~~~ 134 (307)
T COG3386 88 ---------------------------RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMG---Y--FDL 134 (307)
T ss_pred ---------------------------EEEeccCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCC---c--ccc
Confidence 222222 33323333221 1 999999985 778888766 1 22
Q ss_pred ---ecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 342 ---DWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 342 ---d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
+-...++++|++.+|+..+.+. ..+..||||+++++++.||++|+..++|++++++
T Consensus 135 ~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 135 GKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 1113467999998766555544 6699999999999999999999999999999995
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.5e-07 Score=85.67 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=140.3
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..|.++++++.++.+|.+....+.|.+.+..+......+... ..|..++++|..+ .+|.+. .....|...++....
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~--~l~~~~-~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGK--ILYIAN-EDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCC--EEEEEc-CCCCeEEEEECCCCe
Confidence 346778888877789999888899999997754433323222 4478899999877 888876 344678888887532
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce-E
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-S 307 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~-~ 307 (461)
....+.. -..|.++++++.+..++.+...... +...+...... .
T Consensus 107 ~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~----------------------------------~~~~d~~~~~~~~ 151 (300)
T TIGR03866 107 VLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM----------------------------------AHFIDTKTYEIVD 151 (300)
T ss_pred EEeEeeC-CCCcceEEECCCCCEEEEEecCCCe----------------------------------EEEEeCCCCeEEE
Confidence 2111221 2358899999877776666543321 22222222111 1
Q ss_pred EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEEe------eCCCCCceeEEEecCCC
Q psy17325 308 ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTII------STKIYWPNGLTLDIATR 380 (461)
Q Consensus 308 ~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l~------~~~l~~p~glaiD~~~~ 380 (461)
.+.....|..+++++.+..||++... .+.|...++.... ...+- ...-..|.++++++.+.
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEI------------GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCC------------CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 12211228889999888888876443 2233333332211 11110 01223588999998888
Q ss_pred eEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 381 RVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
.+|++....++|..+++. ++.....+... .. +..++++..+.+||.+...++.|+
T Consensus 220 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~-~~----------~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAK-TYEVLDYLLVG-QR----------VWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred EEEEEcCCCCeEEEEECC-CCcEEEEEEeC-CC----------cceEEECCCCCEEEEEcCCCCeEE
Confidence 899987777889999883 45443322211 11 123455557778888876666553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=96.61 Aligned_cols=198 Identities=17% Similarity=0.242 Sum_probs=136.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCC-cEEEEe-------cCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT-NRIVLA-------KDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~-~~~~l~-------~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
.|+-+++. .++.++|+-...+.+..++..-+ .+...- ..--.+|-||+++..+| .||++| +.-.++.
T Consensus 66 ~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~gg--dL~VaD--AYlGL~~ 140 (376)
T KOG1520|consen 66 GGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGG--DLYVAD--AYLGLLK 140 (376)
T ss_pred CCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCC--eEEEEe--cceeeEE
Confidence 34444443 35667888777777766654211 111110 01125799999999998 999999 4468999
Q ss_pred EecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeE-EEEE-ecCCCCccee
Q psy17325 222 IGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRK-LYWI-DEGGNGVPLK 295 (461)
Q Consensus 222 ~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~-~yw~-d~~~~~~~~~ 295 (461)
++..|...+.+... .+.-.++|.||. ++.|||+|+....-. |. ++=. ..... ++
T Consensus 141 V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~----------------rd~~~a~l~g~~~---GR 200 (376)
T KOG1520|consen 141 VGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDR----------------RDFVFAALEGDPT---GR 200 (376)
T ss_pred ECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccch----------------hheEEeeecCCCc---cc
Confidence 99998876555443 345578999998 999999998763210 11 1111 11111 46
Q ss_pred eeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe---EEEeeCCCCCce
Q psy17325 296 IGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR---STIISTKIYWPN 371 (461)
Q Consensus 296 I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~---~~l~~~~l~~p~ 371 (461)
+.+.++..+..+++.+.-. |+|+++.|.+..+-+++.. ..+|.|..+.|... ++++..--+.|.
T Consensus 201 l~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~------------~~ri~rywi~g~k~gt~EvFa~~LPG~PD 268 (376)
T KOG1520|consen 201 LFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT------------TARIKRYWIKGPKAGTSEVFAEGLPGYPD 268 (376)
T ss_pred eEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec------------cceeeeeEecCCccCchhhHhhcCCCCCc
Confidence 7777777777777776544 9999999999999999988 88999999998876 777733556899
Q ss_pred eEEEecCCCeEEEE
Q psy17325 372 GLTLDIATRRVYFA 385 (461)
Q Consensus 372 glaiD~~~~~ly~~ 385 (461)
-|..| .+|..+++
T Consensus 269 NIR~~-~~G~fWVa 281 (376)
T KOG1520|consen 269 NIRRD-STGHFWVA 281 (376)
T ss_pred ceeEC-CCCCEEEE
Confidence 99998 67776665
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-10 Score=75.03 Aligned_cols=41 Identities=46% Similarity=1.007 Sum_probs=37.5
Q ss_pred eEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEec
Q psy17325 337 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377 (461)
Q Consensus 337 ~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~ 377 (461)
.|||+|++..++|++++|||+++++++..++.+|.|||||+
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 67888888777999999999999999999999999999984
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-08 Score=89.14 Aligned_cols=202 Identities=17% Similarity=0.209 Sum_probs=117.0
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccc
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~ 268 (461)
+-..++.||+++|..+ .||... ...+.|+..+++|...+.+-..+..-|.||++- .++++.+++.....+
T Consensus 19 g~~~e~SGLTy~pd~~--tLfaV~-d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L------ 88 (248)
T PF06977_consen 19 GILDELSGLTYNPDTG--TLFAVQ-DEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRL------ 88 (248)
T ss_dssp T--S-EEEEEEETTTT--EEEEEE-TTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEE------
T ss_pred CccCCccccEEcCCCC--eEEEEE-CCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcE------
Confidence 3345699999999988 898776 667899999999987777766678889999995 456666677655443
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeC--CCCce--E---EE---Ee--CCe-eeeEEEeccCCeEEEeecCce
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM--DGSNA--S---IL---VS--GQL-YEALALDLENGMLYYSTLKCT 335 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~--~g~~~--~---~l---~~--~~~-p~~iavd~~~~~lY~t~~~~~ 335 (461)
....+ +++.. . .+ +. .+. .+||+.|+.++.||++...
T Consensus 89 ----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-- 138 (248)
T PF06977_consen 89 ----------------------------YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-- 138 (248)
T ss_dssp ----------------------------EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--
T ss_pred ----------------------------EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--
Confidence 22222 11111 1 01 11 111 7899999999999988654
Q ss_pred eeEEEeecCCCC-ceEEEee--cCCCeEEEe-------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 336 RWLFWTDWGENP-RIERIGM--DGSNRSTII-------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 336 ~~l~~~d~~~~~-~I~~~~~--dG~~~~~l~-------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
.+ +|+..+. .+....+.. ...+..|.+|++|+.+++||+......+|..++. +|....
T Consensus 139 ----------~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--~G~~~~ 206 (248)
T PF06977_consen 139 ----------KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--QGRVVS 206 (248)
T ss_dssp ----------SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T--T--EEE
T ss_pred ----------CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC--CCCEEE
Confidence 33 3555554 222222221 1246679999999999999999999999999998 787644
Q ss_pred EEEc--cccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 406 ILID--LMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 406 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
.+.- +..++. ..+++|-+|+++ +|.||++.+-+-..+
T Consensus 207 ~~~L~~g~~gl~-----~~~~QpEGIa~d~~G~LYIvsEpNlfy~ 246 (248)
T PF06977_consen 207 SLSLDRGFHGLS-----KDIPQPEGIAFDPDGNLYIVSEPNLFYR 246 (248)
T ss_dssp EEE-STTGGG-S-----S---SEEEEEE-TT--EEEEETTTEEEE
T ss_pred EEEeCCcccCcc-----cccCCccEEEECCCCCEEEEcCCceEEE
Confidence 3322 222222 123456666665 589999998775444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-07 Score=87.89 Aligned_cols=251 Identities=15% Similarity=0.172 Sum_probs=142.7
Q ss_pred cCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------CCCcEEEEecCC
Q psy17325 159 IGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG--------ENPRIERIGMDG 226 (461)
Q Consensus 159 ~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~--------~~~~I~~~~~dG 226 (461)
...++|++|.. .++|.++|.+.....-.+..+ ..|+++ +.|..+ .||++... ....|..++...
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGS--FFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCC--EEEEEeccccccccCCCCCEEEEEECcc
Confidence 36789999988 489999998776554444444 469997 999877 99999831 346777777664
Q ss_pred CCc-EEEEe-c-----ccccceeEEeeccCCeeEEecCC-Cceeeecccceeeeecccee--eeEEEEEecCCCCcceee
Q psy17325 227 SNR-STIIS-T-----KIYWPNGLTLDIATRRVYFADSK-LDFIDCKSLEIKTNVNYSTI--FRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 227 ~~~-~~i~~-~-----~~~~P~glavD~~~~~ly~~d~~-~~~i~~~~~~~~~~v~~~~~--~~~~yw~d~~~~~~~~~I 296 (461)
... ..|.. . ....|..+++.+.++.||+++.. ...+..++...++-+....+ ...+|-+.....
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~------ 160 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF------ 160 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCcc------
Confidence 332 22221 1 13356699999999999999866 66676666655444321111 123333322221
Q ss_pred eEEeCCCCceEE--------------EEeC---Ce-eeeEEEec-cCCeEEEeecCceeeEEEeecCCCCceEEEeecCC
Q psy17325 297 GKANMDGSNASI--------------LVSG---QL-YEALALDL-ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS 357 (461)
Q Consensus 297 ~~~~~~g~~~~~--------------l~~~---~~-p~~iavd~-~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~ 357 (461)
+..-.||+...+ ++.. .+ .+. .+.+ .++.+|+|. .+.|+.+++.+.
T Consensus 161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~--------------eG~V~~id~~~~ 225 (352)
T TIGR02658 161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTY--------------TGKIFQIDLSSG 225 (352)
T ss_pred EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEec--------------CCeEEEEecCCC
Confidence 111122222221 1111 00 111 2233 233333332 257777776554
Q ss_pred CeEEEe-----eCC----CCCcee---EEEecCCCeEEE-EcCC--------CCeEEEEEecCCCCeEEEEEccccceee
Q psy17325 358 NRSTII-----STK----IYWPNG---LTLDIATRRVYF-ADSK--------LDFIDFCNYDGTGRQQVILIDLMVEFTN 416 (461)
Q Consensus 358 ~~~~l~-----~~~----l~~p~g---laiD~~~~~ly~-~d~~--------~~~I~~~~~~g~g~~~~~~~~~~~~~~~ 416 (461)
...... ... -=.|.| +++++.+++||+ +... .+.|..+|. .++.....+..+ ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~-~t~kvi~~i~vG-~~--- 300 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA-KTGKRLRKIELG-HE--- 300 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC-CCCeEEEEEeCC-Cc---
Confidence 333221 111 114666 999999999999 4322 268999998 244433333222 11
Q ss_pred ccCCCCCcceEEEeeeCC-EEEEEeCCCcee
Q psy17325 417 DLMGDNGVPALALDLENG-MLYYSTEGAEFL 446 (461)
Q Consensus 417 ~~~~~~~~~~~~l~~~~~-~lYwtd~~~~~i 446 (461)
+.+++++.++. .||.|++.++.|
T Consensus 301 -------~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 301 -------IDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred -------eeeEEECCCCCeEEEEeCCCCCcE
Confidence 23677778888 999999887754
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.3e-07 Score=89.67 Aligned_cols=183 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEe------c-CCCCCceeEEEcCCC----CceEEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA------K-DNITQPRGMMLDPSP----GTRWLFW 210 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~------~-~~~~~p~~ia~d~~~----g~~~ly~ 210 (461)
.++..+|..|.+|++.+ .+++|++....++|.+++.++...+.+. . ....-+.+||++|.- ..++||+
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 35778999999999987 5689999987899999987654433221 1 133557899999763 2227888
Q ss_pred eec-----C---CCCcEEEEecCCC-----CcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 211 TDW-----G---ENPRIERIGMDGS-----NRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 211 td~-----~---~~~~I~~~~~dG~-----~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
+-. . ...+|.|..++.. ..++|+.. ....-..|++++ .++||++-.....-....... .
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~-~-- 177 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFL-P-- 177 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccC-c--
Confidence 731 1 2468999988632 23444432 112344689987 467999765442100000000 0
Q ss_pred ccceeeeEEEEEec----CCCCcceeeeEEeCCCCc----------eEEEEeCCe--eeeEEEeccCCeEEEeecC
Q psy17325 274 NYSTIFRKLYWIDE----GGNGVPLKIGKANMDGSN----------ASILVSGQL--YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 274 ~~~~~~~~~yw~d~----~~~~~~~~I~~~~~~g~~----------~~~l~~~~~--p~~iavd~~~~~lY~t~~~ 333 (461)
..-+.+-+.+. ......++|.|+++||+. +..+...++ |.+|++|| .+.||.++.+
T Consensus 178 ---~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 178 ---NQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred ---chhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 00000000000 000122689999999973 233555555 99999999 7999999876
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=71.10 Aligned_cols=41 Identities=46% Similarity=1.007 Sum_probs=38.1
Q ss_pred EEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeec
Q psy17325 207 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 247 (461)
Q Consensus 207 ~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~ 247 (461)
+|||+|++..++|.+++|||+++++++...+.+|.||||||
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 89999976656999999999999999999999999999996
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-08 Score=96.96 Aligned_cols=164 Identities=21% Similarity=0.262 Sum_probs=109.1
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCC-----------CCcEEEEec---CCCC-cEEEEecccccceeEEeeccCCeeEE
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGE-----------NPRIERIGM---DGSN-RSTIISTKIYWPNGLTLDIATRRVYF 254 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~-----------~~~I~~~~~---dG~~-~~~i~~~~~~~P~glavD~~~~~ly~ 254 (461)
.+.+|++|++|+. | .||+++... ..+|.+..- ||.. ...++.+++..|.||++.. ++ ||+
T Consensus 12 ~~~~P~~ia~d~~-G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV 86 (367)
T TIGR02604 12 LLRNPIAVCFDER-G--RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV 86 (367)
T ss_pred ccCCCceeeECCC-C--CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE
Confidence 4789999999987 5 699998411 137777764 4543 3356666788999999985 44 999
Q ss_pred ecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE-eCCCC-----ceEEEEeC--------Ce-eeeEE
Q psy17325 255 ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA-NMDGS-----NASILVSG--------QL-YEALA 319 (461)
Q Consensus 255 ~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~-~~~g~-----~~~~l~~~--------~~-p~~ia 319 (461)
++... |.+. +.+|. .+++++.. .. +++++
T Consensus 87 ~~~~~------------------------------------i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~ 130 (367)
T TIGR02604 87 ATPPD------------------------------------ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLA 130 (367)
T ss_pred eCCCe------------------------------------EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCce
Confidence 87542 2322 22221 23344331 11 78999
Q ss_pred EeccCCeEEEeecCceeeEEEeec-------CCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 320 LDLENGMLYYSTLKCTRWLFWTDW-------GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~~l~~~d~-------~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
++| .|+||++.....+.-.-... ...+.|+|.+.+|+..+++. ..+..|.||++|+ .++||++|......
T Consensus 131 ~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~-~G~l~~tdn~~~~~ 207 (367)
T TIGR02604 131 WGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDS-WGDVFFCDNDDPPL 207 (367)
T ss_pred ECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-cCcCCCccceECC-CCCEEEEccCCCce
Confidence 998 57899987741110000000 12368999999999888776 8899999999995 79999999866655
Q ss_pred EEEEe
Q psy17325 393 DFCNY 397 (461)
Q Consensus 393 ~~~~~ 397 (461)
.+++.
T Consensus 208 ~~i~~ 212 (367)
T TIGR02604 208 CRVTP 212 (367)
T ss_pred eEEcc
Confidence 55543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.5e-06 Score=80.57 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=114.5
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P 240 (461)
+++|++....+.|.+.+++.......+... ..|++++++|..+ .||.+. .....|...++.+......+.. ...|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~--~l~~~~-~~~~~v~~~d~~~~~~~~~~~~-~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGK--LLYVCA-SDSDTIQVIDLATGEVIGTLPS-GPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCC--EEEEEE-CCCCeEEEEECCCCcEEEeccC-CCCc
Confidence 367888888899999997644433333322 4588999999866 888887 4456788888775433222222 2357
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEE
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALA 319 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~ia 319 (461)
..+++++.++.||.+..... .|...++........+.... |.+++
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~----------------------------------~l~~~d~~~~~~~~~~~~~~~~~~~~ 121 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDN----------------------------------LVTVIDIETRKVLAEIPVGVEPEGMA 121 (300)
T ss_pred cEEEECCCCCEEEEEcCCCC----------------------------------eEEEEECCCCeEEeEeeCCCCcceEE
Confidence 78899988888888765442 34555554332211222223 88999
Q ss_pred EeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++|.+..++.+... ...++| .++......... ..-..|..+++++.+..||++-...+.|..+++
T Consensus 122 ~~~dg~~l~~~~~~-~~~~~~-----------~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 122 VSPDGKIVVNTSET-TNMAHF-----------IDTKTYEIVDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred ECCCCCEEEEEecC-CCeEEE-----------EeCCCCeEEEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 99877766665443 112222 222221111111 112357889999887888887666788999998
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-07 Score=80.07 Aligned_cols=240 Identities=15% Similarity=0.191 Sum_probs=147.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|..+|.+. .+.+++++...+.|-+.|.. |+..+.-+..+ ..|++|.++|..+ .+++| ... .|.|++.....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~G-a~Phgiv~gpdg~---~Witd-~~~-aI~R~dpkt~e 135 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSG-ASPHGIVVGPDGS---AWITD-TGL-AIGRLDPKTLE 135 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCC-CCCceEEECCCCC---eeEec-Ccc-eeEEecCcccc
Confidence 466677774 67899999999999999965 55555555544 6899999999855 89999 444 88887764333
Q ss_pred cEEEEec---ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 229 RSTIIST---KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 229 ~~~i~~~---~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.+.+-.. .-..-+-..+|. .++|+|+....- -.|.++.-..
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~-----------------------------------yGrLdPa~~~ 179 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGA-----------------------------------YGRLDPARNV 179 (353)
T ss_pred eEEeecccccCCCcccceeeCC-CccEEEeecccc-----------------------------------ceecCcccCc
Confidence 3333221 111234567885 678888765320 1122222222
Q ss_pred eEEEEeCCe--eeeEEEeccCCeEEEeecC---------------------------------ceeeEEEeecCCCCceE
Q psy17325 306 ASILVSGQL--YEALALDLENGMLYYSTLK---------------------------------CTRWLFWTDWGENPRIE 350 (461)
Q Consensus 306 ~~~l~~~~~--p~~iavd~~~~~lY~t~~~---------------------------------~~~~l~~~d~~~~~~I~ 350 (461)
.++.-.... |+||.+.| +|.+|++... ..+.++-++|+ +++++
T Consensus 180 i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg-~g~l~ 257 (353)
T COG4257 180 ISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG-TGSLH 257 (353)
T ss_pred eeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccC-Cceee
Confidence 222211111 66666665 4556665322 12455555665 77788
Q ss_pred EEeecCCCeEEE-eeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEE
Q psy17325 351 RIGMDGSNRSTI-ISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALAL 429 (461)
Q Consensus 351 ~~~~dG~~~~~l-~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (461)
|++..-+.-..- +-..-..|..+-|| ..++++..|+..+.|.|+|. .-.. ..++-...... ..+.|
T Consensus 258 rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~agai~rfdp--eta~-ftv~p~pr~n~---------gn~ql 324 (353)
T COG4257 258 RFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDP--ETAR-FTVLPIPRPNS---------GNIQL 324 (353)
T ss_pred EeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccCceeecCc--ccce-EEEecCCCCCC---------Cceec
Confidence 887655543322 22344578999999 88999999999999999998 2222 22222221111 14566
Q ss_pred eeeCCEEEEEeCCCceee
Q psy17325 430 DLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 430 ~~~~~~lYwtd~~~~~i~ 447 (461)
.-..|.|+.++.+...++
T Consensus 325 ~gr~ge~W~~e~gvd~lv 342 (353)
T COG4257 325 DGRPGELWFTEAGVDALV 342 (353)
T ss_pred cCCCCceeecccCcceeE
Confidence 667789999999887664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-06 Score=80.11 Aligned_cols=237 Identities=15% Similarity=0.194 Sum_probs=157.2
Q ss_pred eEEEEeCC---CCeEEEEeCCCCc---EEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCC-CcEEEE
Q psy17325 162 HIYWLDSR---LNRIEVCDENGTN---RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGS-NRSTII 233 (461)
Q Consensus 162 ~ly~~d~~---~~~I~~~~~~G~~---~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~-~~~~i~ 233 (461)
++|+.... .+.|.+.+++... ........+.+|.-|++++..+ .||..... ....|.....|.. .+-+++
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~--~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR--HLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCC--EEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 45555544 6678888777433 2222334568899999999977 99988632 3578888887764 444444
Q ss_pred ec---ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE--
Q psy17325 234 ST---KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI-- 308 (461)
Q Consensus 234 ~~---~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~-- 308 (461)
.. .-..|.-+++|..++.||.+....+.|. ++....+|.-..+
T Consensus 82 n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~--------------------------------v~p~~~dG~l~~~v~ 129 (346)
T COG2706 82 NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS--------------------------------VYPLQADGSLQPVVQ 129 (346)
T ss_pred eccccCCCCCeEEEECCCCCEEEEEEccCceEE--------------------------------EEEcccCCcccccee
Confidence 43 2234699999999999999999887653 3333334443222
Q ss_pred -EEeCCe----------eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEE---EeeCCCCCceeE
Q psy17325 309 -LVSGQL----------YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRST---IISTKIYWPNGL 373 (461)
Q Consensus 309 -l~~~~~----------p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~---l~~~~l~~p~gl 373 (461)
+...+. ++...++|.+++|...|.+ .-+|...++ ||..... .+ ..-.-|.-|
T Consensus 130 ~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi 196 (346)
T COG2706 130 VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEV-KPGAGPRHI 196 (346)
T ss_pred eeecCCCCCCccccCCccceeeeCCCCCEEEEeecC------------CceEEEEEcccCcccccccccc-CCCCCcceE
Confidence 111111 5677889998888888877 556665555 4432211 22 445568999
Q ss_pred EEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 374 aiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
++-+..+..|++..-+++|.....+..+..... +....-++.++.|...-..+.|+.++..||.++.+.+.|
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~-lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI 268 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE-LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI 268 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE-eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 999999999999999999999999654233222 223344555666666555677778899999999999877
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-07 Score=88.76 Aligned_cols=221 Identities=23% Similarity=0.278 Sum_probs=127.7
Q ss_pred cCccceeeeeeee---cCCeEEEEeCCC--------CeEEEEeCCCC-----cEEEEec------CCCCCceeEEEcCCC
Q psy17325 146 SGLDLVEGLAYDW---IGGHIYWLDSRL--------NRIEVCDENGT-----NRIVLAK------DNITQPRGMMLDPSP 203 (461)
Q Consensus 146 ~g~~~p~~iavd~---~~~~ly~~d~~~--------~~I~~~~~~G~-----~~~~l~~------~~~~~p~~ia~d~~~ 203 (461)
.+....-|+|+++ .++.||++-+.. .+|.+..++.. ..++++. .......+|+++|.
T Consensus 46 ~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD- 124 (331)
T PF07995_consen 46 DGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD- 124 (331)
T ss_dssp STTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-
T ss_pred cccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCC-
Confidence 3455678899998 357888887743 47887776544 1233322 23455788999995
Q ss_pred CceEEEEee--cC----------CCCcEEEEecCCCC------------cEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 204 GTRWLFWTD--WG----------ENPRIERIGMDGSN------------RSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 204 g~~~ly~td--~~----------~~~~I~~~~~dG~~------------~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
| +||++- .+ ...+|.|++.+|+. ...+...+++.|.+|++|+.+++||.+|...
T Consensus 125 G--~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 125 G--KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp S--EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred C--cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 6 899983 11 13789999999972 2346677899999999999889999999766
Q ss_pred ceeeecccceeeeeccceeeeEEEEEecCCC-CcceeeeEE----------eCCCCc--eEEEEeCCe-eeeEEEeccCC
Q psy17325 260 DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN-GVPLKIGKA----------NMDGSN--ASILVSGQL-YEALALDLENG 325 (461)
Q Consensus 260 ~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~-~~~~~I~~~----------~~~g~~--~~~l~~~~~-p~~iavd~~~~ 325 (461)
+..+ .|.++..+.+ |.+..-... ...... ....+.... |.|+++-....
T Consensus 203 ~~~d-----------------ein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~ 265 (331)
T PF07995_consen 203 DGWD-----------------EINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSA 265 (331)
T ss_dssp SSSE-----------------EEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSS
T ss_pred CCCc-----------------EEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCcc
Confidence 4432 3444444433 332111000 011111 111122222 77777652211
Q ss_pred eEEEeecCceeeEEEeecCCCCceEEEeecCCC----eEEEeeCCCC-CceeEEEecCCCeEEEEcCCCCeEEE
Q psy17325 326 MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN----RSTIISTKIY-WPNGLTLDIATRRVYFADSKLDFIDF 394 (461)
Q Consensus 326 ~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~----~~~l~~~~l~-~p~glaiD~~~~~ly~~d~~~~~I~~ 394 (461)
| - .-.+-+|+.+++ ..+|.+..++... .+.++ .... .|.+|+++ .+|.||+++...++|+|
T Consensus 266 --f-p--~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~-pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 266 --F-P--EYRGDLFVADYG-GGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQG-PDGALYVSDDSDGKIYR 331 (331)
T ss_dssp --S-G--GGTTEEEEEETT-TTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEE-TTSEEEEEE-TTTTEEE
T ss_pred --C-c--cccCcEEEecCC-CCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEc-CCCeEEEEECCCCeEeC
Confidence 1 0 013445566664 8899999987432 22334 4555 79999999 56999999888899886
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-05 Score=78.01 Aligned_cols=247 Identities=14% Similarity=0.108 Sum_probs=143.5
Q ss_pred EEcCccceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCCCc-EEEEecC-C-----CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENGTN-RIVLAKD-N-----ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~~-~~~l~~~-~-----~~~p~~ia~d~~~g~~~ 207 (461)
+..| ..|.++ +.+.++.||++.+ ..+.|.++|..... ...+..+ . ...|..+++.|... +
T Consensus 43 i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk--~ 118 (352)
T TIGR02658 43 TDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK--T 118 (352)
T ss_pred EEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC--E
Confidence 3444 368886 8888999999999 89999999976544 3333221 1 23455999999977 9
Q ss_pred EEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeec-ccc-eeee--e-c--------
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK-SLE-IKTN--V-N-------- 274 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~-~~~-~~~~--v-~-------- 274 (461)
||++++.....+..+++.......-+... ..+..+........+.+.|...-.+..- .++ ..++ + +
T Consensus 119 l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~ 197 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLIN 197 (352)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcccccc
Confidence 99998765678888888754432212110 0111111111222222233222110000 000 0011 1 0
Q ss_pred cc---eeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe-----C-----Ce-eee---EEEeccCCeEEEeecCceee
Q psy17325 275 YS---TIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS-----G-----QL-YEA---LALDLENGMLYYSTLKCTRW 337 (461)
Q Consensus 275 ~~---~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~-----~-----~~-p~~---iavd~~~~~lY~t~~~~~~~ 337 (461)
+- ......+|+.... .|+.+++.+........ . +. |.| +++++.+++||++..+ .
T Consensus 198 rP~~~~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~---~ 269 (352)
T TIGR02658 198 HPAYSNKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ---R 269 (352)
T ss_pred CCceEcCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC---C
Confidence 00 1123555655553 58888876654332211 0 12 444 9999999999995433 1
Q ss_pred EEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC-eEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR-RVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 338 l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~-~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
-.|+.......|...++....+..-+ .--..|.+|++.++++ +||.++...+.|..+|.. ++....
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i-~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~-t~k~i~ 336 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKI-ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE-TGKELS 336 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEE-eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc-CCeEEe
Confidence 23665555667777776444333333 2345799999999999 999999999999999982 454433
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-05 Score=81.36 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=147.4
Q ss_pred eecCCeEEEEeC-C--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEE
Q psy17325 157 DWIGGHIYWLDS-R--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTI 232 (461)
Q Consensus 157 d~~~~~ly~~d~-~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i 232 (461)
.+.++.+|++.. + ..+|.+++.||...+++.... .-......|... +.+|++... ..+.|+..++.+..++.+
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~-~~i~y~s~~~~~~~Iyv~dl~tg~~~~l 228 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQ-TAFYYTSYGERKPTLYKYNLYTGKKEKI 228 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCC-cEEEEEEccCCCCEEEEEECCCCcEEEE
Confidence 345788999873 3 568999999999988776653 223456666643 137776644 358999999987766666
Q ss_pred EecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC
Q psy17325 233 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312 (461)
Q Consensus 233 ~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~ 312 (461)
... -......++.+.+++|.++....+. ..|+..++++...+.+...
T Consensus 229 t~~-~g~~~~~~~SPDG~~la~~~~~~g~--------------------------------~~Iy~~dl~~g~~~~LT~~ 275 (419)
T PRK04043 229 ASS-QGMLVVSDVSKDGSKLLLTMAPKGQ--------------------------------PDIYLYDTNTKTLTQITNY 275 (419)
T ss_pred ecC-CCcEEeeEECCCCCEEEEEEccCCC--------------------------------cEEEEEECCCCcEEEcccC
Confidence 532 1122234566667778776543321 3588888877765555433
Q ss_pred Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--
Q psy17325 313 QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL-- 389 (461)
Q Consensus 313 ~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~-- 389 (461)
.. -......|.++.|||+. +.+..+.|++++++|...+.+....... .++++++++|.++-...
T Consensus 276 ~~~d~~p~~SPDG~~I~F~S----------dr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 276 PGIDVNGNFVEDDKRIVFVS----------DRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CCccCccEECCCCCEEEEEE----------CCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCc
Confidence 21 12235777777776653 3345678999999988776555333222 37888888887764432
Q ss_pred ------CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCce--e-ecceeEEeeecc
Q psy17325 390 ------DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF--L-KTPLFCITRNYF 458 (461)
Q Consensus 390 ------~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~--i-~~~~~~~~~~~~ 458 (461)
..|..++++ +...+.+... +.. .....++++..|+++....+. + .+.+.+..+..+
T Consensus 343 ~~~~~~~~I~v~d~~--~g~~~~LT~~--~~~---------~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 343 EFGKNTFNLYLISTN--SDYIRRLTAN--GVN---------QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ccCCCCcEEEEEECC--CCCeEECCCC--CCc---------CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 478999983 3333333322 111 124677888888777654322 3 567766555544
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.8e-06 Score=73.94 Aligned_cols=211 Identities=19% Similarity=0.218 Sum_probs=121.9
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE-EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~-~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
+|..+|-..+.|||+|...+.|.+.+....... .-+.... -.|.++ |..|+...|..-.+. +....+.||....
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~il-pv~~~~q~~~v~~G~--kf~i~nwd~~~~~ 92 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFIL-PVEGGPQEFAVGCGS--KFVIVNWDGVSES 92 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEE-EecCCCceEEEeecc--eEEEEEcccccce
Confidence 677788889999999999888887665443322 2122110 122222 222322355444332 4445566665543
Q ss_pred EEEeccc---------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec-CCCCcceeeeEEe
Q psy17325 231 TIISTKI---------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE-GGNGVPLKIGKAN 300 (461)
Q Consensus 231 ~i~~~~~---------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~-~~~~~~~~I~~~~ 300 (461)
.++...+ .+-+.=-+|+.++ -|. -...+. .+. ... .+.++ ..
T Consensus 93 a~v~~t~~ev~~d~kknR~NDgkvdP~Gr-yy~-GtMad~-----------------------~~~le~~--~g~Ly-~~ 144 (310)
T KOG4499|consen 93 AKVYRTLFEVQPDRKKNRLNDGKVDPDGR-YYG-GTMADF-----------------------GDDLEPI--GGELY-SW 144 (310)
T ss_pred eeeeeeccccCchHHhcccccCccCCCCc-eee-eeeccc-----------------------ccccccc--ccEEE-Ee
Confidence 3332211 1234445666433 342 111100 000 000 02233 44
Q ss_pred CCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEe--ec---CCCeEEEee------CCCC
Q psy17325 301 MDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG--MD---GSNRSTIIS------TKIY 368 (461)
Q Consensus 301 ~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~--~d---G~~~~~l~~------~~l~ 368 (461)
+.|...+.+...-. ++||+-|.....+|++|+. +-.|...+ .. -+++++|+. ..-.
T Consensus 145 ~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl------------n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~ 212 (310)
T KOG4499|consen 145 LAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSL------------NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL 212 (310)
T ss_pred ccCCCceeeehhccCCccccccccCcEEEEEccC------------ceEEeeeecCCCcccccCcceeEEeccCCCcCCC
Confidence 55555666655434 9999999999999999987 66664444 32 256777653 1344
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEc
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~ 409 (461)
.|.|++|| .+|+||++-...++|.++++. +|.....+.-
T Consensus 213 ~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~-tGK~L~eikl 251 (310)
T KOG4499|consen 213 EPDGMTID-TEGNLYVATFNGGTVQKVDPT-TGKILLEIKL 251 (310)
T ss_pred CCCcceEc-cCCcEEEEEecCcEEEEECCC-CCcEEEEEEc
Confidence 69999999 699999999999999999994 6776554443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-05 Score=78.89 Aligned_cols=224 Identities=12% Similarity=0.091 Sum_probs=133.5
Q ss_pred CCeEEEEeCCC----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEEEEe
Q psy17325 160 GGHIYWLDSRL----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~i~~ 234 (461)
++-.|++.... .+|.+++.+|...+.+.... ......++.|... +|+|+.. .....|+..++++...+.+..
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~~p~wSPDG~--~La~~s~~~g~~~L~~~dl~tg~~~~lt~ 259 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSP-EPLMSPAWSPDGR--KLAYVSFENRKAEIFVQDIYTQVREKVTS 259 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCC-CcccCceECCCCC--EEEEEEecCCCcEEEEEECCCCCeEEecC
Confidence 45556665432 37888999998877665533 2334567888765 7777642 334689999998766554432
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
. -......++.+.+++|+++....+. ..|++.++++...+.+.....
T Consensus 260 ~-~g~~~~~~wSPDG~~La~~~~~~g~--------------------------------~~Iy~~dl~tg~~~~lt~~~~ 306 (448)
T PRK04792 260 F-PGINGAPRFSPDGKKLALVLSKDGQ--------------------------------PEIYVVDIATKALTRITRHRA 306 (448)
T ss_pred C-CCCcCCeeECCCCCEEEEEEeCCCC--------------------------------eEEEEEECCCCCeEECccCCC
Confidence 2 1122356778888888876433221 247777777666555443322
Q ss_pred -eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--Ce
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL--DF 391 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~--~~ 391 (461)
....++.|.++.|+++. +.+....|+++++++...+.+. ....+..+.++.++++.||++.... ..
T Consensus 307 ~~~~p~wSpDG~~I~f~s----------~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 307 IDTEPSWHPDGKSLIFTS----------ERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred CccceEECCCCCEEEEEE----------CCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceE
Confidence 45567777777776653 2233568999998766655554 2223344568888888998875533 47
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
|+.++++ +.....+... ... . ..++++++.+|+++....
T Consensus 376 I~~~dl~--~g~~~~lt~~--~~d-------~--~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 376 IARQDLE--TGAMQVLTST--RLD-------E--SPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred EEEEECC--CCCeEEccCC--CCC-------C--CceECCCCCEEEEEEecC
Confidence 8888883 3333333221 111 0 114566666666655444
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=71.55 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=59.5
Q ss_pred eeEEEeccCCeEEEeecCce----eeEEE-eecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 316 EALALDLENGMLYYSTLKCT----RWLFW-TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~----~~l~~-~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
++++|+..+|.|||||+... .+++- .+-..++++.+.++.....++++ .+|..|+||++.+++..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc
Confidence 47899988899999998711 01000 01134689999999999888888 88999999999999999999999999
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
+|.+..+
T Consensus 80 Ri~rywl 86 (89)
T PF03088_consen 80 RILRYWL 86 (89)
T ss_dssp EEEEEES
T ss_pred eEEEEEE
Confidence 9999999
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=98.55 E-value=5e-08 Score=60.84 Aligned_cols=33 Identities=55% Similarity=1.097 Sum_probs=27.2
Q ss_pred cCCcccCceeeccCCccccCCCCeeeeCCCCce
Q psy17325 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 76 ~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
.+++|+|+|.+++++|+|+|++||.|..|+++|
T Consensus 4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 4 NNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp GGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 367899999999999999999999999888877
|
... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.2e-05 Score=76.64 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=132.9
Q ss_pred ecCCeEEEEeCCC-----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEE
Q psy17325 158 WIGGHIYWLDSRL-----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRST 231 (461)
Q Consensus 158 ~~~~~ly~~d~~~-----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~ 231 (461)
+.++-+|++.... .+|.+++.+|...+.+.... ......++.|... +|+++.. ...+.|++.++++...+.
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~--~la~~s~~~~~~~l~~~~l~~g~~~~ 237 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGK--RIAYVSFEQKRPRIFVQNLDTGRREQ 237 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCC--EEEEEEcCCCCCEEEEEECCCCCEEE
Confidence 3456667665432 26889999998776665433 2345678888755 7755542 234789999998766655
Q ss_pred EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe
Q psy17325 232 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS 311 (461)
Q Consensus 232 i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~ 311 (461)
+.... ......++.+.+++|+++-...+. ..|++.++++...+.+..
T Consensus 238 l~~~~-g~~~~~~~SpDG~~la~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 238 ITNFE-GLNGAPAWSPDGSKLAFVLSKDGN--------------------------------PEIYVMDLASRQLSRVTN 284 (430)
T ss_pred ccCCC-CCcCCeEECCCCCEEEEEEccCCC--------------------------------ceEEEEECCCCCeEEccc
Confidence 43221 122346777777788765433221 247777777766554443
Q ss_pred CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC-
Q psy17325 312 GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL- 389 (461)
Q Consensus 312 ~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~- 389 (461)
... ....++.|.++.||++. +......|++.++++...+.+. .........++.++++.|+++....
T Consensus 285 ~~~~~~~~~~spDg~~i~f~s----------~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 285 HPAIDTEPFWGKDGRTLYFTS----------DRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEE----------CCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCC
Confidence 222 34456667677666542 2233567998888776655544 2222333467788888998886433
Q ss_pred -CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 390 -DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 390 -~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
..|..++++ +...+.+.... .. ....++.++..|+++....+
T Consensus 354 ~~~l~~~dl~--tg~~~~lt~~~--~~---------~~p~~spdg~~i~~~~~~~g 396 (430)
T PRK00178 354 NFHVAAQDLQ--RGSVRILTDTS--LD---------ESPSVAPNGTMLIYATRQQG 396 (430)
T ss_pred ceEEEEEECC--CCCEEEccCCC--CC---------CCceECCCCCEEEEEEecCC
Confidence 368888983 33334333221 11 11256667777777665543
|
|
| >PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-08 Score=60.87 Aligned_cols=36 Identities=44% Similarity=0.913 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|..+++.|++.|++.+++|.|.|++||.|..|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 566788999999999999999999999999998887
|
... |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=75.12 Aligned_cols=212 Identities=18% Similarity=0.245 Sum_probs=115.3
Q ss_pred ceeeeeeeecCCeEEEEeCCC------------CeEEEEeCCCCcE--EEEecCCC----CCceeEEEcCCCC---ceEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRL------------NRIEVCDENGTNR--IVLAKDNI----TQPRGMMLDPSPG---TRWL 208 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~------------~~I~~~~~~G~~~--~~l~~~~~----~~p~~ia~d~~~g---~~~l 208 (461)
++.++.+| ..++|++.|++. -+|...|+..... +..+...+ .....|++|...+ +.++
T Consensus 2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 35678888 478899999773 3788888765542 22233222 2355789998542 1399
Q ss_pred EEeecCCCCcEEEEecCCCCcEEEEecccccce--eEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 209 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPN--GLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 209 y~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~--glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
|++|. ....|...++.......+... ...|. ...+...+.
T Consensus 81 YItD~-~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~------------------------------------ 122 (287)
T PF03022_consen 81 YITDS-GGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGE------------------------------------ 122 (287)
T ss_dssp EEEET-TTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTE------------------------------------
T ss_pred EEeCC-CcCcEEEEEccCCcEEEEecC-CcceeccccceeccCc------------------------------------
Confidence 99994 456888888764332223322 22222 111111111
Q ss_pred cCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEec---cCCeEEEeecCceeeEEEeecCCCCceEEEee----cCC--
Q psy17325 287 EGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL---ENGMLYYSTLKCTRWLFWTDWGENPRIERIGM----DGS-- 357 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~---~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~----dG~-- 357 (461)
.....+| ..||++.| .++.|||.-.. +.+++++.. +.+
T Consensus 123 ----------~~~~~dg-----------~~gial~~~~~d~r~LYf~~ls------------s~~ly~v~T~~L~~~~~~ 169 (287)
T PF03022_consen 123 ----------SFQWPDG-----------IFGIALSPISPDGRWLYFHPLS------------SRKLYRVPTSVLRDPSLS 169 (287)
T ss_dssp ----------EEEETTS-----------EEEEEE-TTSTTS-EEEEEETT-------------SEEEEEEHHHHCSTT--
T ss_pred ----------eEecCCC-----------ccccccCCCCCCccEEEEEeCC------------CCcEEEEEHHHhhCcccc
Confidence 1111222 45677765 55678887655 455666652 221
Q ss_pred -------CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCC----CeEEEEEccccceeeccCCCCCcce
Q psy17325 358 -------NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG----RQQVILIDLMVEFTNDLMGDNGVPA 426 (461)
Q Consensus 358 -------~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (461)
..+.+. .......|+++| .+|.||+++...+.|.+.+. ++ .+..++......+. .|
T Consensus 170 ~~~~~~~~v~~lG-~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~--~~~~~~~~~~~l~~d~~~l~---------~p 236 (287)
T PF03022_consen 170 DAQALASQVQDLG-DKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDP--DGPYTPENFEILAQDPRTLQ---------WP 236 (287)
T ss_dssp HHH-HHHT-EEEE-E---SECEEEEE-TTTEEEEEECCCTEEEEEET--TTSB-GCCEEEEEE-CC-GS---------SE
T ss_pred ccccccccceecc-ccCCCCceEEEC-CCCcEEEecCCCCeEEEEeC--CCCcCccchheeEEcCceee---------cc
Confidence 223333 223567899999 59999999999999999999 45 23333333332222 36
Q ss_pred EEEeeeC---CEEEEEeCCCcee
Q psy17325 427 LALDLEN---GMLYYSTEGAEFL 446 (461)
Q Consensus 427 ~~l~~~~---~~lYwtd~~~~~i 446 (461)
-++++.+ ++||+....-+++
T Consensus 237 d~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 237 DGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp EEEEE-T--TS-EEEEE-S--SS
T ss_pred ceeeeccccCceEEEEECcchHh
Confidence 7788777 9999987665544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-05 Score=79.76 Aligned_cols=183 Identities=19% Similarity=0.220 Sum_probs=111.9
Q ss_pred EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE------Ee-cccccceeEEeecc------CC
Q psy17325 184 IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI------IS-TKIYWPNGLTLDIA------TR 250 (461)
Q Consensus 184 ~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i------~~-~~~~~P~glavD~~------~~ 250 (461)
..++..++..|++|++.|. | .||+++ ....+|.+++.++...+.+ +. .+...+.|||+++. ++
T Consensus 22 ~~~va~GL~~Pw~maflPD-G--~llVtE-R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~ 97 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPD-N--QLWVTE-RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNP 97 (454)
T ss_pred EEEEECCCCCceEEEEcCC-C--eEEEEE-ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCc
Confidence 3445567899999999996 6 799998 3346898887655433222 11 13566899999854 45
Q ss_pred eeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-----ceEEEEeCCe------eeeEE
Q psy17325 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-----NASILVSGQL------YEALA 319 (461)
Q Consensus 251 ~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-----~~~~l~~~~~------p~~ia 319 (461)
.||++-+.... ........+|.|..++.. ..++|+.... -..|+
T Consensus 98 ~lYvsyt~~~~-------------------------~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~ 152 (454)
T TIGR03606 98 YVYISYTYKNG-------------------------DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLV 152 (454)
T ss_pred EEEEEEeccCC-------------------------CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEE
Confidence 67776432110 000000035777766521 2344544221 45789
Q ss_pred EeccCCeEEEeecCcee-e----E--------EEe------ecC-CCCceEEEeecCCC----------eEEEeeCCCCC
Q psy17325 320 LDLENGMLYYSTLKCTR-W----L--------FWT------DWG-ENPRIERIGMDGSN----------RSTIISTKIYW 369 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~-~----l--------~~~------d~~-~~~~I~~~~~dG~~----------~~~l~~~~l~~ 369 (461)
++|. |+||++.-.... . . -+. |.. -.++|.|++.||+- +..|.+.++.+
T Consensus 153 FgPD-G~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RN 231 (454)
T TIGR03606 153 FGPD-GKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRN 231 (454)
T ss_pred ECCC-CcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccc
Confidence 9984 689998654100 0 0 000 111 24689999999973 23455589999
Q ss_pred ceeEEEecCCCeEEEEcCCC---CeEEEEEe
Q psy17325 370 PNGLTLDIATRRVYFADSKL---DFIDFCNY 397 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~---~~I~~~~~ 397 (461)
|.||++|+ +++||.+|-+- ..|.++..
T Consensus 232 p~Gla~dp-~G~Lw~~e~Gp~~~DEiN~I~~ 261 (454)
T TIGR03606 232 PQGLAFTP-DGTLYASEQGPNSDDELNIIVK 261 (454)
T ss_pred cceeEECC-CCCEEEEecCCCCCcEEEEecc
Confidence 99999997 89999998765 34555543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-05 Score=71.83 Aligned_cols=196 Identities=12% Similarity=0.173 Sum_probs=128.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
...++++++.++.||.+-...-.|.-.+++|...+++.-..+..|.+|++-.. | ..-.+| ....+++....+-...
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n--~fvi~d-ER~~~l~~~~vd~~t~ 162 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-N--QFVIVD-ERDRALYLFTVDADTT 162 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-C--EEEEEe-hhcceEEEEEEcCCcc
Confidence 46789999999999998888888999999999988877777889999999753 2 222334 2335666666653322
Q ss_pred EEEEec----------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 230 STIIST----------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 230 ~~i~~~----------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
...... .-..-.|||-|+..++||++-..... .||=++.+.. .+.+.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~-------------------~I~~~~~~~~----~l~~~ 219 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPI-------------------GIFEVTQSPS----SLSVH 219 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCc-------------------EEEEEecCCc----ccccc
Confidence 111110 12345799999999999999876532 2232222221 11111
Q ss_pred eCCCC--ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe--------eCCCCC
Q psy17325 300 NMDGS--NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII--------STKIYW 369 (461)
Q Consensus 300 ~~~g~--~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~--------~~~l~~ 369 (461)
-..+. .+...+.. ..|+.+|+.++.|++-... +.++...+.+|.-+..+. ..++.+
T Consensus 220 ~~~~~~~~~~~f~~D--vSgl~~~~~~~~LLVLS~E------------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipq 285 (316)
T COG3204 220 ASLDPTADRDLFVLD--VSGLEFNAITNSLLVLSDE------------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQ 285 (316)
T ss_pred cccCcccccceEeec--cccceecCCCCcEEEEecC------------CceEEEEecCCCeeeeEEeccCCCCCcccCCC
Confidence 11111 11111111 6788999999988886555 677888888887655442 357889
Q ss_pred ceeEEEecCCCeEEEEcC
Q psy17325 370 PNGLTLDIATRRVYFADS 387 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~ 387 (461)
|.|||.| ++|.||++..
T Consensus 286 aEGiamD-d~g~lYIvSE 302 (316)
T COG3204 286 AEGIAMD-DDGNLYIVSE 302 (316)
T ss_pred cceeEEC-CCCCEEEEec
Confidence 9999999 8899998743
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00018 Score=73.15 Aligned_cols=225 Identities=13% Similarity=0.156 Sum_probs=135.2
Q ss_pred cCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEEEE
Q psy17325 159 IGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRSTII 233 (461)
Q Consensus 159 ~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~i~ 233 (461)
.++-+|++... ..+|.+++.+|...+.+.... ......++.|... .|.++.. .....|+..++++...+.+.
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~--~la~~s~~~g~~~i~i~dl~~G~~~~l~ 239 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQVA 239 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC-CceeeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCCeEEcc
Confidence 45566776543 237999999999877776543 3355788888755 6655432 33478999999876655544
Q ss_pred ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC
Q psy17325 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ 313 (461)
Q Consensus 234 ~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~ 313 (461)
.. -.....+++.+.+++|+++....+. ..|+..++++...+.+....
T Consensus 240 ~~-~~~~~~~~~SPDG~~La~~~~~~g~--------------------------------~~I~~~d~~tg~~~~lt~~~ 286 (429)
T PRK03629 240 SF-PRHNGAPAFSPDGSKLAFALSKTGS--------------------------------LNLYVMDLASGQIRQVTDGR 286 (429)
T ss_pred CC-CCCcCCeEECCCCCEEEEEEcCCCC--------------------------------cEEEEEECCCCCEEEccCCC
Confidence 22 1223357888888888887443221 23666777665555444332
Q ss_pred e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CC
Q psy17325 314 L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LD 390 (461)
Q Consensus 314 ~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~ 390 (461)
. ....+..|.++.|+++. +.+....|+++++++...+.+. .........++.++++.|+++... ..
T Consensus 287 ~~~~~~~wSPDG~~I~f~s----------~~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 287 SNNTEPTWFPDSQNLAYTS----------DQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CCcCceEECCCCCEEEEEe----------CCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 2 45567777777665442 2233568999999887666654 333344567788788888776443 34
Q ss_pred eEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 391 FIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 391 ~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
.|+.++++ +|.. ..+.... .. ....++.++.+|+++....
T Consensus 356 ~I~~~dl~-~g~~-~~Lt~~~--~~---------~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 356 HIAKQDLA-TGGV-QVLTDTF--LD---------ETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred eEEEEECC-CCCe-EEeCCCC--CC---------CCceECCCCCEEEEEEcCC
Confidence 68888883 3433 3333211 00 1235666777776665543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00017 Score=73.06 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=132.0
Q ss_pred CCeEEEEeCC---CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC-CCcEEEEecCCCCcEEEEec
Q psy17325 160 GGHIYWLDSR---LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE-NPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 160 ~~~ly~~d~~---~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~-~~~I~~~~~dG~~~~~i~~~ 235 (461)
++.+|+...+ ...|.+.+.+|...+.+.... ......++.|... +|+|+.... ...|+..++.+...+.+...
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~~~~~ 232 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADYDGANPQTITRSR-EPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREKVASF 232 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC-CceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEEeecC
Confidence 4445555442 446888999888777766533 2244566777755 888876432 36799888876544433321
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
-.....+++.+.++.|+++....+. ..|+..++++...+.+.....
T Consensus 233 -~~~~~~~~~spDg~~l~~~~~~~~~--------------------------------~~i~~~d~~~~~~~~l~~~~~~ 279 (417)
T TIGR02800 233 -PGMNGAPAFSPDGSKLAVSLSKDGN--------------------------------PDIYVMDLDGKQLTRLTNGPGI 279 (417)
T ss_pred -CCCccceEECCCCCEEEEEECCCCC--------------------------------ccEEEEECCCCCEEECCCCCCC
Confidence 1233456777777788776443221 246777776655444433222
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--CeE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL--DFI 392 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~--~~I 392 (461)
....++.|.+..|+++. +.+....|+.+++++...+.+. ........+++.+.++.|+++.... .+|
T Consensus 280 ~~~~~~s~dg~~l~~~s----------~~~g~~~iy~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTS----------DRGGSPQIYMMDADGGEVRRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred CCCEEECCCCCEEEEEE----------CCCCCceEEEEECCCCCEEEee-cCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence 23445666666665543 2233567999888877665554 3445566778888888888886543 478
Q ss_pred EEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 393 DFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 393 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
..++++ +...+.+.+... . ...++++++++|+++....+
T Consensus 349 ~~~d~~--~~~~~~l~~~~~-~----------~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 349 AVMDLD--GGGERVLTDTGL-D----------ESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EEEeCC--CCCeEEccCCCC-C----------CCceECCCCCEEEEEEeCCC
Confidence 888883 333333332111 1 11255666777777666553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-05 Score=69.62 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=131.5
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeE-EecCCCceeeeccccee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY-FADSKLDFIDCKSLEIK 270 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly-~~d~~~~~i~~~~~~~~ 270 (461)
.+..+|+++|..+ .||.+- +..+.|..++++|....++-...+..|.+|+.= ++..| ++|.....+..
T Consensus 86 ~nvS~LTynp~~r--tLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~------ 154 (316)
T COG3204 86 ANVSSLTYNPDTR--TLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYL------ 154 (316)
T ss_pred ccccceeeCCCcc--eEEEec-CCCceEEEEecCCceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEE------
Confidence 4588999999988 999876 667899999999999888888889999999875 45555 45555543321
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
+-.|..+.-+.-......+...... +. -+|+|.||.++.||++-... .-+|
T Consensus 155 ------------~~vd~~t~~~~~~~~~i~L~~~~k~-----N~GfEGlA~d~~~~~l~~aKEr~-----------P~~I 206 (316)
T COG3204 155 ------------FTVDADTTVISAKVQKIPLGTTNKK-----NKGFEGLAWDPVDHRLFVAKERN-----------PIGI 206 (316)
T ss_pred ------------EEEcCCccEEeccceEEeccccCCC-----CcCceeeecCCCCceEEEEEccC-----------CcEE
Confidence 1111111000000001111111100 11 68999999999999886551 2245
Q ss_pred EEEeecCCCeEEEee----C----CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCC
Q psy17325 350 ERIGMDGSNRSTIIS----T----KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~----~----~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 421 (461)
+..++.-+...+-+. . -+..-.|+.+|..++.|++-.-....+..++++|+-.....+..+..++..++
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~di--- 283 (316)
T COG3204 207 FEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDI--- 283 (316)
T ss_pred EEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccC---
Confidence 555533222111110 0 13456799999999999998778889999999433333344555555565433
Q ss_pred CCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 422 NGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 422 ~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
+++-+|+.+ +|.||++.+-+-..|.
T Consensus 284 --pqaEGiamDd~g~lYIvSEPnlfy~F 309 (316)
T COG3204 284 --PQAEGIAMDDDGNLYIVSEPNLFYRF 309 (316)
T ss_pred --CCcceeEECCCCCEEEEecCCcceec
Confidence 455566665 5899999887765553
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00028 Score=71.93 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=116.4
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCCCcEEEEecccccceeEEeeccC
Q psy17325 171 NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 249 (461)
Q Consensus 171 ~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~ 249 (461)
.+|.+.+.+|...+.+.... ......++.|... .|+++. ......|+..++.+..++.+... -......++.+.+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g~~~~~~~SPDG 257 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRELVGNF-PGMTFAPRFSPDG 257 (435)
T ss_pred eEEEEECCCCCCcEEEecCC-CCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEEEeecC-CCcccCcEECCCC
Confidence 48999999999877765432 2355677888754 665554 23447899999987665544322 1223456777777
Q ss_pred CeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEE
Q psy17325 250 RRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLY 328 (461)
Q Consensus 250 ~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY 328 (461)
++|+++-...+. ..|++.++++...+.+..... ....++.|.+..|+
T Consensus 258 ~~la~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~ 305 (435)
T PRK05137 258 RKVVMSLSQGGN--------------------------------TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIV 305 (435)
T ss_pred CEEEEEEecCCC--------------------------------ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEE
Confidence 788766433221 247777777666555443322 44566777777665
Q ss_pred EeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CCeEEEEEecCCCCeEEE
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~~I~~~~~~g~g~~~~~ 406 (461)
++. +......|+..+++|...+.+... -..-...++.+++++|+++... ...|..+++ +|.....
T Consensus 306 f~s----------~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~--~~~~~~~ 372 (435)
T PRK05137 306 FES----------DRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP--DGSGERI 372 (435)
T ss_pred EEE----------CCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEEC--CCCceEe
Confidence 542 333356899999988877666522 2223446787788888887543 347888888 4444343
Q ss_pred E
Q psy17325 407 L 407 (461)
Q Consensus 407 ~ 407 (461)
+
T Consensus 373 l 373 (435)
T PRK05137 373 L 373 (435)
T ss_pred c
Confidence 3
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00013 Score=74.42 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=118.1
Q ss_pred CCeEEEEeCC-----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEEE
Q psy17325 160 GGHIYWLDSR-----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTII 233 (461)
Q Consensus 160 ~~~ly~~d~~-----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i~ 233 (461)
++-.|+.... ..+|.+.+.+|.....+.... ......++.|... .|+++... ....|++.++++..++.+.
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~-~~v~~p~wSpDg~--~la~~s~~~~~~~l~~~dl~~g~~~~l~ 244 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA-EPILSPAWSPDGK--KLAYVSFERGRSAIYVQDLATGQRELVA 244 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC-CccccccCCCCCC--EEEEEecCCCCcEEEEEECCCCCEEEec
Confidence 4445655432 236888999998777665432 2344667888755 77766533 3468999999876665553
Q ss_pred ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC
Q psy17325 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ 313 (461)
Q Consensus 234 ~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~ 313 (461)
.. -......++.+.+++|+++-...+. ..|++.++++...+.+....
T Consensus 245 ~~-~g~~~~~~~SpDG~~l~~~~s~~g~--------------------------------~~Iy~~d~~~g~~~~lt~~~ 291 (433)
T PRK04922 245 SF-RGINGAPSFSPDGRRLALTLSRDGN--------------------------------PEIYVMDLGSRQLTRLTNHF 291 (433)
T ss_pred cC-CCCccCceECCCCCEEEEEEeCCCC--------------------------------ceEEEEECCCCCeEECccCC
Confidence 22 1123356788878888776432211 24777777766555444322
Q ss_pred e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CC
Q psy17325 314 L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LD 390 (461)
Q Consensus 314 ~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~ 390 (461)
. ....++.|.++.|+++. +......|+..++++...+.+. ..-.....+++.++++.|+++... ..
T Consensus 292 ~~~~~~~~spDG~~l~f~s----------d~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 292 GIDTEPTWAPDGKSIYFTS----------DRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CCccceEECCCCCEEEEEE----------CCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCce
Confidence 2 34567777777666543 2233467999888776655554 222345568888888899887543 23
Q ss_pred eEEEEEec
Q psy17325 391 FIDFCNYD 398 (461)
Q Consensus 391 ~I~~~~~~ 398 (461)
.|..++++
T Consensus 361 ~I~v~d~~ 368 (433)
T PRK04922 361 RIAVMDLS 368 (433)
T ss_pred eEEEEECC
Confidence 68888983
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00023 Score=72.37 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=117.7
Q ss_pred cCCeEEEEeCC-CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCCCcEEEEecc
Q psy17325 159 IGGHIYWLDSR-LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGSNRSTIISTK 236 (461)
Q Consensus 159 ~~~~ly~~d~~-~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~~~~~i~~~~ 236 (461)
.+.-.|++... ..+|.+++.+|...+.+.... ......++.|... .|+++.. ...+.|+..++++..++.+...
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~--~la~~s~~~~~~~I~~~dl~~g~~~~l~~~- 238 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGT--KLAYVSFESKKPVVYVHDLATGRRRVVANF- 238 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCC--EEEEEEccCCCcEEEEEECCCCCEEEeecC-
Confidence 35666776543 457999999998876665432 2344667888755 6766542 3347899999987665544322
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-e
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-Y 315 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p 315 (461)
-......++.+.+++|+++-...+. ..|++.+++++..+.+..... .
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~lt~~~~~~ 286 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGN--------------------------------SQIYTVNADGSGLRRLTQSSGID 286 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCC--------------------------------ceEEEEECCCCCcEECCCCCCCC
Confidence 1233467788888888775433221 246777776665544433221 3
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC--CeEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL--DFID 393 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~--~~I~ 393 (461)
...++.|.+..|+++ ++.+....|+..++++...+.+.... ......++.++++.|+++.... ..|.
T Consensus 287 ~~~~wSpDG~~l~f~----------s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~ 355 (427)
T PRK02889 287 TEPFFSPDGRSIYFT----------SDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLY 355 (427)
T ss_pred cCeEEcCCCCEEEEE----------ecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEE
Confidence 345677777766654 23334567888888776655444222 2334567887888888775433 3688
Q ss_pred EEEec
Q psy17325 394 FCNYD 398 (461)
Q Consensus 394 ~~~~~ 398 (461)
..+++
T Consensus 356 v~d~~ 360 (427)
T PRK02889 356 VQDLA 360 (427)
T ss_pred EEECC
Confidence 88883
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=57.56 Aligned_cols=38 Identities=39% Similarity=0.702 Sum_probs=34.5
Q ss_pred EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecC
Q psy17325 362 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDG 399 (461)
Q Consensus 362 l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g 399 (461)
++...+..|+|||+|+.+++|||+|...+.|++++++|
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 44578999999999999999999999999999999943
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00038 Score=69.04 Aligned_cols=252 Identities=12% Similarity=0.106 Sum_probs=119.2
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
+..+-.-+.++++.+.++.+|+++. .+.|.++|+.......-+..+ ..|+++++.+... ++|.+.+. .+.+..++
T Consensus 32 i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~--~~~v~n~~-~~~v~v~D 106 (369)
T PF02239_consen 32 IPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGK--YVYVANYE-PGTVSVID 106 (369)
T ss_dssp EE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTT--EEEEEEEE-TTEEEEEE
T ss_pred EcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-CCcceEEEcCCCC--EEEEEecC-CCceeEec
Confidence 3444333566777777889999975 689999998665533333333 4699999998877 99999843 45777766
Q ss_pred cCCCCcEEEEec-cc------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 224 MDGSNRSTIIST-KI------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 224 ~dG~~~~~i~~~-~~------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
.........+.. .. .++.+|.-.+.....+++-...+ +|
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~----------------------------------~I 152 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG----------------------------------EI 152 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT----------------------------------EE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC----------------------------------eE
Confidence 554333222222 11 12345555443333333334443 45
Q ss_pred eEEeCCCCceE--EEEeCCe-eeeEEEeccCCeEEEeecC----------ceeeE------------------------E
Q psy17325 297 GKANMDGSNAS--ILVSGQL-YEALALDLENGMLYYSTLK----------CTRWL------------------------F 339 (461)
Q Consensus 297 ~~~~~~g~~~~--~l~~~~~-p~~iavd~~~~~lY~t~~~----------~~~~l------------------------~ 339 (461)
...+....... ..+..+. |++..+||.++++|.+... +..++ +
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 55554433211 1222222 8888999888888875322 11111 2
Q ss_pred EeecCC-CCceEEEee------cCCCeEEEee-CCCCCceeEEEecCCCeEEEE---cCCCCeEEEEEecCCCCeEEEEE
Q psy17325 340 WTDWGE-NPRIERIGM------DGSNRSTIIS-TKIYWPNGLTLDIATRRVYFA---DSKLDFIDFCNYDGTGRQQVILI 408 (461)
Q Consensus 340 ~~d~~~-~~~I~~~~~------dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~---d~~~~~I~~~~~~g~g~~~~~~~ 408 (461)
|.-.+. ...|--... +-...+++.. ...+.|..+...+.+.+||+. ....+.|..+|. .-.....-.
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~--~tl~~~~~i 310 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDK--KTLKVVKTI 310 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEEC--CGTEEEE-H
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEEC--cCcceeEEE
Confidence 322221 111111111 1111111111 123456777887777777776 466789999999 333322111
Q ss_pred ccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 409 DLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
....+.. ...+..+.++..+|++.|..+
T Consensus 311 ~~~~~~~--------~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 311 TPGPGKR--------VVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp HHHHT----------EEEEEE-TTSSEEEEEEE--T
T ss_pred eccCCCc--------EeccEECCCCCEEEEEEecCC
Confidence 1112210 013456667778888888876
|
... |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00054 Score=63.85 Aligned_cols=230 Identities=17% Similarity=0.157 Sum_probs=138.7
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-----CCcEEEEec----C---CCCCceeEEEcCCCC------
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-----GTNRIVLAK----D---NITQPRGMMLDPSPG------ 204 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-----G~~~~~l~~----~---~~~~p~~ia~d~~~g------ 204 (461)
.+.+.|..|.||++.+ ++.++++|.+++.....+.+ |.....++. . ....|.|+++....+
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 3557788999999986 66899999999999988887 444222222 1 224699999985543
Q ss_pred -----ceEEEEeecCCCCcEEEEecC--CC---CcEEEEecc--cccceeEEeecc--CCeeEEecCCCceeeeccccee
Q psy17325 205 -----TRWLFWTDWGENPRIERIGMD--GS---NRSTIISTK--IYWPNGLTLDIA--TRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 205 -----~~~ly~td~~~~~~I~~~~~d--G~---~~~~i~~~~--~~~P~glavD~~--~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
.++||.++ ...|...+.. -+ ...+++... -.-=.||||-.. ...||-+|-...+|++-+.
T Consensus 96 g~~~~a~Fif~tE---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~--- 169 (336)
T TIGR03118 96 GITGPSRFLFVTE---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG--- 169 (336)
T ss_pred CcccceeEEEEeC---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC---
Confidence 22466655 2345444322 11 111223221 223457888643 6789999987766543111
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeec-C-CCC
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDW-G-ENP 347 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~-~-~~~ 347 (461)
.-.+..++|.....-+..+. |.+|.- .+++||+|-.....-- -.|. | ..+
T Consensus 170 ------------------------~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~-~d~v~G~G~G 222 (336)
T TIGR03118 170 ------------------------SFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADR-NDEVAGAGLG 222 (336)
T ss_pred ------------------------ccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcc-cccccCCCcc
Confidence 11112233332222111112 777765 4899999743300000 0011 1 135
Q ss_pred ceEEEeecCCCeEEEee-CCCCCceeEEEec-----CCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 348 RIERIGMDGSNRSTIIS-TKIYWPNGLTLDI-----ATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~-----~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
-|...+++|...+-+.+ ..|..|-||++-+ ..+.|.+-..+.++|..+|.+ +|...-.+
T Consensus 223 ~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~-sG~~~g~L 287 (336)
T TIGR03118 223 YVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ-SGAQLGQL 287 (336)
T ss_pred eEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC-CCceeeee
Confidence 69999999998887764 4699999999954 358999999999999999984 56654333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.7e-07 Score=49.95 Aligned_cols=24 Identities=46% Similarity=1.037 Sum_probs=18.5
Q ss_pred CceEeCCCCCeecCCCCceecCcc
Q psy17325 50 GALCTCPPGEILSNDSVTCQDMNE 73 (461)
Q Consensus 50 ~~~C~C~~G~~l~~~~~~C~d~~e 73 (461)
||.|.|++||.+..++++|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 477888888887777788888775
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0014 Score=64.98 Aligned_cols=186 Identities=12% Similarity=0.133 Sum_probs=108.7
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P 240 (461)
+.+|+++...+++.++|.+......-+.....-+.++++.+..+ ++|++. . ...|..+++.-.....-+.. -..|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~-r-dg~vsviD~~~~~~v~~i~~-G~~~ 80 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR--YLYVAN-R-DGTVSVIDLATGKVVATIKV-GGNP 80 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS--EEEEEE-T-TSEEEEEETTSSSEEEEEE--SSEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC--EEEEEc-C-CCeEEEEECCcccEEEEEec-CCCc
Confidence 44568899999999999776554433433212245677788766 999998 3 36899999875543333333 3379
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC-CCceEEEEeCCe-----
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD-GSNASILVSGQL----- 314 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~-g~~~~~l~~~~~----- 314 (461)
.|+++.+.++.||.+....+.+. +.+.. .+..+.+-....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~----------------------------------v~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVS----------------------------------VIDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEE----------------------------------EEETTT--EEEEEE--EE-TTTS
T ss_pred ceEEEcCCCCEEEEEecCCCcee----------------------------------Eeccccccceeeccccccccccc
Confidence 99999999999999987665432 22211 111122211111
Q ss_pred ---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 315 ---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS-NRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 315 ---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~-~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
+.+|...+.+....++-.. .++|...+.... ...+-....-..|.+..+|+...++|.+-...+
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd------------~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn 194 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKD------------TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSN 194 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETT------------TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGT
T ss_pred CCCceeEEecCCCCEEEEEEcc------------CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccc
Confidence 3355555544433333333 678887775443 322222234567999999988888888878888
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
.|..++.
T Consensus 195 ~i~viD~ 201 (369)
T PF02239_consen 195 KIAVIDT 201 (369)
T ss_dssp EEEEEET
T ss_pred eeEEEee
Confidence 9999998
|
... |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.5e-06 Score=54.90 Aligned_cols=40 Identities=48% Similarity=0.891 Sum_probs=36.6
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN 182 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~ 182 (461)
++..++..|.|+|+||..+.|||+|...+.|.+++++|..
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 4566888999999999999999999999999999999964
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.5e-05 Score=71.70 Aligned_cols=182 Identities=21% Similarity=0.269 Sum_probs=95.5
Q ss_pred cceeeeeeeecC-----CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 149 DLVEGLAYDWIG-----GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 149 ~~p~~iavd~~~-----~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
.....++||... +.+|++|.....|.+.++.......+.... .. .+|..+ .|..+ + ...-.
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~-~~-----~~p~~~---~~~i~-g----~~~~~ 126 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS-FS-----PDPDAG---PFTIG-G----ESFQW 126 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG-CT-----TS-SSE---EEEET-T----EEEEE
T ss_pred cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC-cc-----eecccc---ceecc-C----ceEec
Confidence 345678888743 589999999999999997654444443322 11 122211 11111 1 11111
Q ss_pred cCCCCcEEEEecccccceeEEeec---cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEe
Q psy17325 224 MDGSNRSTIISTKIYWPNGLTLDI---ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN 300 (461)
Q Consensus 224 ~dG~~~~~i~~~~~~~P~glavD~---~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~ 300 (461)
.+| ..|+++.+ .++.|||.--....++++. ...-- -.......
T Consensus 127 ~dg-------------~~gial~~~~~d~r~LYf~~lss~~ly~v~--------------------T~~L~-~~~~~~~~ 172 (287)
T PF03022_consen 127 PDG-------------IFGIALSPISPDGRWLYFHPLSSRKLYRVP--------------------TSVLR-DPSLSDAQ 172 (287)
T ss_dssp TTS-------------EEEEEE-TTSTTS-EEEEEETT-SEEEEEE--------------------HHHHC-STT--HHH
T ss_pred CCC-------------ccccccCCCCCCccEEEEEeCCCCcEEEEE--------------------HHHhh-Cccccccc
Confidence 222 34566644 4567888876654433321 10000 00000000
Q ss_pred CCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC----CCeEEEe-eCC-CCCceeE
Q psy17325 301 MDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG----SNRSTII-STK-IYWPNGL 373 (461)
Q Consensus 301 ~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG----~~~~~l~-~~~-l~~p~gl 373 (461)
.-....+.+...+. ..|+++|+ .|.||+++.. .+.|.+.+.++ .+..+++ +.. +.||.+|
T Consensus 173 ~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~------------~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 173 ALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVE------------QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp -HHHT-EEEEE---SECEEEEET-TTEEEEEECC------------CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred cccccceeccccCCCCceEEECC-CCcEEEecCC------------CCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence 00112233333222 67999997 9999999988 88899998888 3444554 345 9999999
Q ss_pred EEec-CCCeEEEEcCCCCe
Q psy17325 374 TLDI-ATRRVYFADSKLDF 391 (461)
Q Consensus 374 aiD~-~~~~ly~~d~~~~~ 391 (461)
+++. .++.||+.-.+..+
T Consensus 240 ~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 240 KIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp EE-T--TS-EEEEE-S--S
T ss_pred eeccccCceEEEEECcchH
Confidence 9983 27999998655444
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00026 Score=69.48 Aligned_cols=222 Identities=17% Similarity=0.200 Sum_probs=126.4
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCc----EEEEec----CCCCCceeEEEcCCCCceEEEEeecC
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTN----RIVLAK----DNITQPRGMMLDPSPGTRWLFWTDWG 214 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~----~~~l~~----~~~~~p~~ia~d~~~g~~~ly~td~~ 214 (461)
...++..+.+++. ..+.+|+... +.+..++ |.. ..+++. .....-+.|+++|. | +||++- +
T Consensus 126 fa~~~~~~~~~a~--~~~~~~~~n~----~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pD-G--~Lyvs~-G 195 (399)
T COG2133 126 FAQGRLVYFGISE--PGGGLYVANR----VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPD-G--KLYVTT-G 195 (399)
T ss_pred ccccceeeeEEEe--ecCCceEEEE----EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCC-C--cEEEEe-C
Confidence 3455666766665 4667776544 3333333 311 122222 22455778999997 5 799984 3
Q ss_pred CC-------------CcEEEEecCCCCc-------EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeec
Q psy17325 215 EN-------------PRIERIGMDGSNR-------STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN 274 (461)
Q Consensus 215 ~~-------------~~I~~~~~dG~~~-------~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~ 274 (461)
++ .+|.+...+|... ..+...++..|.||++++.++.||.++...+.+. -.+--..+-
T Consensus 196 ~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~--~~Deln~i~ 273 (399)
T COG2133 196 SNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALR--GPDELNSIR 273 (399)
T ss_pred CCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCccc--Ccccccccc
Confidence 22 4455544443321 3466778999999999999999999999885541 000000000
Q ss_pred cceeee--EEEEEecCCCCcceeeeEEeCCCCceEEEEe------CCe-eeeEEEeccC------CeEEEeecCceeeEE
Q psy17325 275 YSTIFR--KLYWIDEGGNGVPLKIGKANMDGSNASILVS------GQL-YEALALDLEN------GMLYYSTLKCTRWLF 339 (461)
Q Consensus 275 ~~~~~~--~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~------~~~-p~~iavd~~~------~~lY~t~~~~~~~l~ 339 (461)
....|. ..||-..-+. +...+++....+.. ... |.||++-.-+ +.||++..+
T Consensus 274 ~G~nYGWP~~~~G~~~~g-------~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hg------ 340 (399)
T COG2133 274 PGKNYGWPYAYFGQNYDG-------RAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHG------ 340 (399)
T ss_pred cCCccCCceeccCcccCc-------cccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeec------
Confidence 012232 4455322221 12222333222221 122 7888876221 577777665
Q ss_pred EeecCCCCceEEEeecCCC---eEEEeeC-CCCCceeEEEecCCCeEEEEcCC-CCeEEEEEe
Q psy17325 340 WTDWGENPRIERIGMDGSN---RSTIIST-KIYWPNGLTLDIATRRVYFADSK-LDFIDFCNY 397 (461)
Q Consensus 340 ~~d~~~~~~I~~~~~dG~~---~~~l~~~-~l~~p~glaiD~~~~~ly~~d~~-~~~I~~~~~ 397 (461)
+-.+.+.+.+|.. .+.++.. .-..|.+++++ .++.||++|-. .++|+|+..
T Consensus 341 ------sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 341 ------SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred ------ceeEEEeccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeecCCCCeEEEecC
Confidence 3367778888883 3334432 22589999998 67888887666 669999987
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00097 Score=68.17 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=125.1
Q ss_pred eeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCCc
Q psy17325 153 GLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSNR 229 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~~ 229 (461)
..++.+.++.|+|+... ..+|.+.++++...+.+.... ......++.|... .|+++ +...+..|+.+++++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGK--KLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCC--EEEEEEeCCCCeEEEEEECCCCCe
Confidence 45667777888877543 346999998876655553321 1223578888765 77765 323346799999987765
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.+... .......++.+.++.|+++....+. ..|++.++++...+.+
T Consensus 299 ~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~--------------------------------~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 299 TRITRH-RAIDTEPSWHPDGKSLIFTSERGGK--------------------------------PQIYRVNLASGKVSRL 345 (448)
T ss_pred EECccC-CCCccceEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCEEEE
Confidence 544332 2234456677777788776433221 2577777776554444
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
..... ..+.++.|.++.||++... +...+|++.++++...+.+..... ....++.++++.|+++...
T Consensus 346 t~~g~~~~~~~~SpDG~~l~~~~~~----------~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 346 TFEGEQNLGGSITPDGRSMIMVNRT----------NGKFNIARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ecCCCCCcCeeECCCCCEEEEEEec----------CCceEEEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEec
Confidence 32222 4456788888888776433 123468888888876665542222 1233677788888886543
Q ss_pred C--CeEEEEEecCCCCeEEEE
Q psy17325 389 L--DFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 389 ~--~~I~~~~~~g~g~~~~~~ 407 (461)
. ..|+.++. +|.....+
T Consensus 414 ~g~~~l~~~~~--~G~~~~~l 432 (448)
T PRK04792 414 QGKQVLAAVSI--DGRFKARL 432 (448)
T ss_pred CCceEEEEEEC--CCCceEEC
Confidence 3 35788888 67665444
|
|
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-06 Score=94.64 Aligned_cols=71 Identities=37% Similarity=0.859 Sum_probs=59.0
Q ss_pred CCCC--CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee--cCcceecCCccc--CceeeccCCccccCCCC
Q psy17325 25 GPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ--DMNECEQPGYCS--QMCTNTKGSYICSCNEG 98 (461)
Q Consensus 25 ~~~C--~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~--d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g 98 (461)
|.+| +..+|..+++.-..+|....++|.|.|+.||. |.+|+ .++||. ...|. ..|.|.+|+|.|-|.+|
T Consensus 3896 G~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyT----G~~Ce~~Gi~eCs-~n~C~~gg~C~n~~gsf~CncT~g 3970 (4289)
T KOG1219|consen 3896 GNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYT----GKRCEARGISECS-KNVCGTGGQCINIPGSFHCNCTPG 3970 (4289)
T ss_pred CcccccccccccCCCCCCCCEEEecCCCeeEeCCCCcc----Cceeecccccccc-cccccCCceeeccCCceEeccChh
Confidence 3577 45789888866678899999999999999995 78897 378995 44674 59999999999999999
Q ss_pred ee
Q psy17325 99 YV 100 (461)
Q Consensus 99 ~~ 100 (461)
|.
T Consensus 3971 ~~ 3972 (4289)
T KOG1219|consen 3971 IL 3972 (4289)
T ss_pred Hh
Confidence 95
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0015 Score=66.47 Aligned_cols=191 Identities=15% Similarity=0.200 Sum_probs=117.2
Q ss_pred CCeEEEEeCCC----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEEEe
Q psy17325 160 GGHIYWLDSRL----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i~~ 234 (461)
++-.|++.... .+|.+.+.+|.....+.... ......++.|... +|.++... ..+.|+..++.+...+.+..
T Consensus 169 ~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~--~la~~s~~~~~~~i~i~dl~tg~~~~l~~ 245 (429)
T PRK01742 169 TRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGS--KLAYVSFENKKSQLVVHDLRSGARKVVAS 245 (429)
T ss_pred CEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-CccccceEcCCCC--EEEEEEecCCCcEEEEEeCCCCceEEEec
Confidence 44457766432 58999999998876665432 3356778888755 67666433 34689999988765544432
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
. -..-..+++.+.+++|+++-...+. ..|+..++++...+.+.....
T Consensus 246 ~-~g~~~~~~wSPDG~~La~~~~~~g~--------------------------------~~Iy~~d~~~~~~~~lt~~~~ 292 (429)
T PRK01742 246 F-RGHNGAPAFSPDGSRLAFASSKDGV--------------------------------LNIYVMGANGGTPSQLTSGAG 292 (429)
T ss_pred C-CCccCceeECCCCCEEEEEEecCCc--------------------------------EEEEEEECCCCCeEeeccCCC
Confidence 2 1122356778777888876433222 236777776665555443322
Q ss_pred -eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
....++.|.+..|+++. +.....+|+..+.++...+.+- .. . ..+++.++++.|+++.. ..|.
T Consensus 293 ~~~~~~wSpDG~~i~f~s----------~~~g~~~I~~~~~~~~~~~~l~-~~-~--~~~~~SpDG~~ia~~~~--~~i~ 356 (429)
T PRK01742 293 NNTEPSWSPDGQSILFTS----------DRSGSPQVYRMSASGGGASLVG-GR-G--YSAQISADGKTLVMING--DNVV 356 (429)
T ss_pred CcCCEEECCCCCEEEEEE----------CCCCCceEEEEECCCCCeEEec-CC-C--CCccCCCCCCEEEEEcC--CCEE
Confidence 55677888777666542 2233568888888777655442 22 1 23567777888888754 5677
Q ss_pred EEEecCCCCe
Q psy17325 394 FCNYDGTGRQ 403 (461)
Q Consensus 394 ~~~~~g~g~~ 403 (461)
.+++. +|..
T Consensus 357 ~~Dl~-~g~~ 365 (429)
T PRK01742 357 KQDLT-SGST 365 (429)
T ss_pred EEECC-CCCe
Confidence 78883 4544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0025 Score=64.99 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=125.8
Q ss_pred eeeeeeeecCCeEEEEeC--CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDS--RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~ 227 (461)
....++.+.++.|+++.. +...|.+.++.+...+.+.... ....+.++.|... .|+++ +...+..|+.+++++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGR--KVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCC--EEEEEEecCCCceEEEEECCCC
Confidence 344566666777776653 3468999998877665554321 2234667888755 66554 3334578999999887
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
..+.+... .......++.+.+++|+++....+. ..|++.+++|...+
T Consensus 281 ~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~--------------------------------~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 281 TTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGS--------------------------------PQLYVMNADGSNPR 327 (435)
T ss_pred ceEEccCC-CCccCceeEcCCCCEEEEEECCCCC--------------------------------CeEEEEECCCCCeE
Confidence 66554332 2223445667767777765432211 25777888877665
Q ss_pred EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 308 ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 308 ~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
.+..... ....++.|.++.|+++... +...+|...+++|...+.+. .. .....+++.++++.||++-
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~----------~~~~~i~~~d~~~~~~~~lt-~~-~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQG----------GGQFSIGVMKPDGSGERILT-SG-FLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcC----------CCceEEEEEECCCCceEecc-CC-CCCCCCeECCCCCEEEEEE
Confidence 5543322 3446677888877765432 12346888888877665554 22 2356678888888888863
Q ss_pred CCC-----CeEEEEEecCCCCeEEE
Q psy17325 387 SKL-----DFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 387 ~~~-----~~I~~~~~~g~g~~~~~ 406 (461)
... ..++.+++ +|.....
T Consensus 396 ~~~~~~~~~~L~~~dl--~g~~~~~ 418 (435)
T PRK05137 396 QTPGSGGAPKLYTVDL--TGRNERE 418 (435)
T ss_pred ccCCCCCcceEEEEEC--CCCceEE
Confidence 322 47999999 5555443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0019 Score=65.89 Aligned_cols=206 Identities=14% Similarity=0.103 Sum_probs=125.2
Q ss_pred eeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCC
Q psy17325 152 EGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSN 228 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~ 228 (461)
..+++.+.++.|+++... ...|.+.++++...+.+.... .....+++.|... +|+++ +...+..|+..++++..
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~--~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGR--RLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCC--EEEEEEeCCCCceEEEEECCCCC
Confidence 445666677788887643 346999999877665554321 1234678888765 77665 32334689999998766
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
.+.+... .......++.+.++.|+++....+. ..|++.++++...+.
T Consensus 284 ~~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~--------------------------------~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 284 LTRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGR--------------------------------PQIYRVAASGGSAER 330 (433)
T ss_pred eEECccC-CCCccceEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCeEE
Confidence 5544322 2223456777777777766432211 247777776655444
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
+..... ...+++.|.++.|+++... +....|+..++++...+.+. .. ......++.+++..|+++..
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~----------~~~~~I~v~d~~~g~~~~Lt-~~-~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGS----------GGQYRIAVMDLSTGSVRTLT-PG-SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECC----------CCceeEEEEECCCCCeEECC-CC-CCCCCceECCCCCEEEEEEe
Confidence 433222 4567888888888775432 11336888888776655443 22 12345578777788887644
Q ss_pred --CCCeEEEEEecCCCCeEEEE
Q psy17325 388 --KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 --~~~~I~~~~~~g~g~~~~~~ 407 (461)
+...|+.+++ +|.....+
T Consensus 399 ~~g~~~L~~~~~--~g~~~~~l 418 (433)
T PRK04922 399 EGGRGVLAAVST--DGRVRQRL 418 (433)
T ss_pred cCCceEEEEEEC--CCCceEEc
Confidence 3457888888 56554433
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=61.07 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=57.5
Q ss_pred eeEEeeccCCeeEEecCCCceeee--c--ccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-e
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDC--K--SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-Y 315 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~--~--~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p 315 (461)
++|+|+..++.|||+|+....-.. + -++.+. .+++.+.++.....++++.+-. |
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~---------------------~GRll~ydp~t~~~~vl~~~L~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRP---------------------TGRLLRYDPSTKETTVLLDGLYFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT------------------------EEEEEEETTTTEEEEEEEEESSE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCC---------------------CcCEEEEECCCCeEEEehhCCCcc
Confidence 478999877999999986521000 0 001111 1689999999888888887533 9
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS 357 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~ 357 (461)
+||++.+.+..|.+++.. ..||.|..+.|.
T Consensus 60 NGVals~d~~~vlv~Et~------------~~Ri~rywl~Gp 89 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETG------------RYRILRYWLKGP 89 (89)
T ss_dssp EEEEE-TTSSEEEEEEGG------------GTEEEEEESSST
T ss_pred CeEEEcCCCCEEEEEecc------------CceEEEEEEeCC
Confidence 999999999999999998 889999998873
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.004 Score=62.91 Aligned_cols=208 Identities=8% Similarity=0.053 Sum_probs=126.6
Q ss_pred eeeeecCCe-EEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCCc
Q psy17325 154 LAYDWIGGH-IYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSNR 229 (461)
Q Consensus 154 iavd~~~~~-ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~~ 229 (461)
.++.+.++. +|++... ...|.+.++.+...+.+.... ......++.|... +|.++ +...+..|+.+++++...
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGS--KLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCC--EEEEEEccCCCcEEEEEECCCCcE
Confidence 445555664 7765543 567999999887777665421 1223355777654 66554 334458999999988766
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.|..... .-....+.+.+++|||+....+. ..|++.++++...+.+
T Consensus 270 ~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~--------------------------------~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 270 TQITNYPG-IDVNGNFVEDDKRIVFVSDRLGY--------------------------------PNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEcccCCC-ccCccEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCeEeC
Confidence 55543221 11223567777888877654322 3588888887776554
Q ss_pred EeCCeeeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC-
Q psy17325 310 VSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS- 387 (461)
Q Consensus 310 ~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~- 387 (461)
...+.. ..+++|.++.|.++..... .+++ ....|+.+++++...+.|..... -...++.++++.|+++..
T Consensus 317 t~~g~~-~~~~SPDG~~Ia~~~~~~~-----~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 317 VFHGKN-NSSVSTYKNYIVYSSRETN-----NEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ccCCCc-CceECCCCCEEEEEEcCCC-----cccCCCCcEEEEEECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEcc
Confidence 433222 2378888887776643300 0011 12579999998887776653322 224678878888888743
Q ss_pred -CCCeEEEEEecCCCCeEEEE
Q psy17325 388 -KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 -~~~~I~~~~~~g~g~~~~~~ 407 (461)
+...+..+++ +|.....+
T Consensus 389 ~~~~~L~~~~l--~g~~~~~l 407 (419)
T PRK04043 389 GNQSALGIIRL--NYNKSFLF 407 (419)
T ss_pred CCcEEEEEEec--CCCeeEEe
Confidence 3346889999 67665544
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.3e-06 Score=55.29 Aligned_cols=39 Identities=51% Similarity=1.129 Sum_probs=31.6
Q ss_pred cCcceec-CCccc--CceeeccCCccccCCCCeeeeCCCCce
Q psy17325 70 DMNECEQ-PGYCS--QMCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 70 d~~eC~~-~~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
||+||.. ...|. +.|+|+.|+|.|.|++||.+..++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 6899984 34686 699999999999999999976665554
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0061 Score=62.01 Aligned_cols=207 Identities=8% Similarity=0.062 Sum_probs=126.0
Q ss_pred eeeeeeeecCCeEEEEeC--CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDS--RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~dG~ 227 (461)
....++.+.++.|.++.. +...|.+.++++...+.+.... .....+++.|... +|+++.. .....|+.+++++.
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~--~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCC--EEEEEEcCCCCcEEEEEECCCC
Confidence 445677777777766542 3457888898876655554321 2234578999866 8887642 23357999999876
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
..+.+... -......++.+.++.|+++-...+. ..|++.++++...+
T Consensus 278 ~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~--------------------------------~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 278 QIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGR--------------------------------PQVYKVNINGGAPQ 324 (429)
T ss_pred CEEEccCC-CCCcCceEECCCCCEEEEEeCCCCC--------------------------------ceEEEEECCCCCeE
Confidence 65555432 2234566777777777655432211 25777888776655
Q ss_pred EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 308 ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 308 ~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
.+..... ....++.|.++.|+++... +....|+..++++...+.+. ... .-...++.+++..|+++.
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~----------~g~~~I~~~dl~~g~~~~Lt-~~~-~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSN----------GGQQHIAKQDLATGGVQVLT-DTF-LDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEcc----------CCCceEEEEECCCCCeEEeC-CCC-CCCCceECCCCCEEEEEE
Confidence 5543322 4567788888877765432 11345777888776665554 221 112456777788888875
Q ss_pred CC--CCeEEEEEecCCCCeEEEE
Q psy17325 387 SK--LDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 387 ~~--~~~I~~~~~~g~g~~~~~~ 407 (461)
.. ...++.+++ +|.....+
T Consensus 393 ~~~~~~~l~~~~~--~G~~~~~l 413 (429)
T PRK03629 393 SQGMGSVLNLVST--DGRFKARL 413 (429)
T ss_pred cCCCceEEEEEEC--CCCCeEEC
Confidence 43 335778888 67665444
|
|
| >PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.8e-06 Score=54.99 Aligned_cols=40 Identities=40% Similarity=0.810 Sum_probs=32.5
Q ss_pred CCCcccCCCCCCC--CCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 29 DLAECKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 29 ~~~~C~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|++||...+..|. ..|+|+.|+|.|.|++||....++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 4688988777786 579999999999999999865555554
|
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0058 Score=62.03 Aligned_cols=194 Identities=11% Similarity=0.078 Sum_probs=110.5
Q ss_pred CCeEEEEeCC-------CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCce-EEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 160 GGHIYWLDSR-------LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTR-WLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 160 ~~~ly~~d~~-------~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~-~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
+.-+|+.... ..+|.+++.+|...+.+....- .-..-+..|...+. ++|++.....+.|+..+++|...+.
T Consensus 147 ~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~-~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~ 225 (428)
T PRK01029 147 GKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHS-LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK 225 (428)
T ss_pred CEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCC-CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE
Confidence 4445665432 3479999999998777654321 11223566664311 3456764556899999999887766
Q ss_pred EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE--eCCC---Cce
Q psy17325 232 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA--NMDG---SNA 306 (461)
Q Consensus 232 i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~--~~~g---~~~ 306 (461)
+... -......++.+.+++|.|+-...+. ..|+.. ++++ ...
T Consensus 226 lt~~-~g~~~~p~wSPDG~~Laf~s~~~g~--------------------------------~di~~~~~~~~~g~~g~~ 272 (428)
T PRK01029 226 ILAL-QGNQLMPTFSPRKKLLAFISDRYGN--------------------------------PDLFIQSFSLETGAIGKP 272 (428)
T ss_pred eecC-CCCccceEECCCCCEEEEEECCCCC--------------------------------cceeEEEeecccCCCCcc
Confidence 6542 2223456778888888876543211 112322 2221 222
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--CeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--NRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
+.+..... ....++.|.+..|+++. +......|+.+++++. ..+.+. .........++.+++++|
T Consensus 273 ~~lt~~~~~~~~~p~wSPDG~~Laf~s----------~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 273 RRLLNEAFGTQGNPSFSPDGTRLVFVS----------NKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eEeecCCCCCcCCeEECCCCCEEEEEE----------CCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEE
Confidence 33332221 34567888777666543 2223567888887643 233332 332344567788888888
Q ss_pred EEEcCC--CCeEEEEEec
Q psy17325 383 YFADSK--LDFIDFCNYD 398 (461)
Q Consensus 383 y~~d~~--~~~I~~~~~~ 398 (461)
+++... ...|..++++
T Consensus 342 af~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLA 359 (428)
T ss_pred EEEEcCCCCcEEEEEECC
Confidence 886432 3578899983
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0035 Score=57.51 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=136.2
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeC-CCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDE-NGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~-~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+|.+|.+++ .+..+++|.+. .|.+.+. .+...+.-+. ....+-...++|+. | .|+++.. ..---|.+..
T Consensus 104 a~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~-G--~lWFt~q--~G~yGrLdPa 176 (353)
T COG4257 104 ASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW-G--NLWFTGQ--IGAYGRLDPA 176 (353)
T ss_pred CCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCC-c--cEEEeec--cccceecCcc
Confidence 4789999986 67889999987 8998886 4433332222 12234556789987 5 5888862 1111232222
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce--eeee----------cccee--eeEEEEEecCCCC
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI--KTNV----------NYSTI--FRKLYWIDEGGNG 291 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~--~~~v----------~~~~~--~~~~yw~d~~~~~ 291 (461)
-...++.-...-..|.||.+-+ ++.||++....+.|-.++-.. -+.| -+.|. -+.++-|+++.
T Consensus 177 ~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~-- 253 (353)
T COG4257 177 RNVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-- 253 (353)
T ss_pred cCceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCC--
Confidence 2222333333445799999986 788999877666654442100 0000 00011 12444455555
Q ss_pred cceeeeEEeCCCCc-eEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCC
Q psy17325 292 VPLKIGKANMDGSN-ASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY 368 (461)
Q Consensus 292 ~~~~I~~~~~~g~~-~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~ 368 (461)
+.+++.++.-+. ++--+.... |+.|-|| ..++++.+|.. .+.|.|.+..-...+++. ..-.
T Consensus 254 --g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~------------agai~rfdpeta~ftv~p-~pr~ 317 (353)
T COG4257 254 --GSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEAD------------AGAIGRFDPETARFTVLP-IPRP 317 (353)
T ss_pred --ceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccc------------cCceeecCcccceEEEec-CCCC
Confidence 467777665443 222121111 8889999 56666666655 788999988777777776 4455
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++.-+.+|...+.|+.++.+...+.++..
T Consensus 318 n~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 318 NSGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred CCCceeccCCCCceeecccCcceeEEEEe
Confidence 66778999889999999998887776654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.004 Score=63.26 Aligned_cols=205 Identities=14% Similarity=0.116 Sum_probs=122.2
Q ss_pred eeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEecCCCCc
Q psy17325 153 GLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGMDGSNR 229 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~dG~~~ 229 (461)
..++.+.++.|+++... ...|.+.++++.....+.... ......++.|... .|+++ +......|+.+++++...
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~~ 276 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGR--TLAVALSRDGNSQIYTVNADGSGL 276 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC--EEEEEEccCCCceEEEEECCCCCc
Confidence 45666667777776543 346999998877665554221 2345678888866 77664 423447899999987765
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.+... .......++.+.+++|+++....+. ..|++.++++...+.+
T Consensus 277 ~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~--------------------------------~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 277 RRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGA--------------------------------PQIYRMPASGGAAQRV 323 (427)
T ss_pred EECCCC-CCCCcCeEEcCCCCEEEEEecCCCC--------------------------------cEEEEEECCCCceEEE
Confidence 554332 2223345677777777765432211 2467777666554444
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC-
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS- 387 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~- 387 (461)
..... ....++.|.++.|+++... +....|+..++++...+.+... ......++.+++..|+++-.
T Consensus 324 t~~g~~~~~~~~SpDG~~Ia~~s~~----------~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 324 TFTGSYNTSPRISPDGKLLAYISRV----------GGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ecCCCCcCceEECCCCCEEEEEEcc----------CCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEec
Confidence 32222 3346778878877765432 1123688888776665555422 22345688878888888643
Q ss_pred -CCCeEEEEEecCCCCeEEEE
Q psy17325 388 -KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 -~~~~I~~~~~~g~g~~~~~~ 407 (461)
+...++.+++ +|..+..+
T Consensus 392 ~g~~~l~~~~~--~g~~~~~l 410 (427)
T PRK02889 392 GGRSVLAAVSS--DGRIKQRL 410 (427)
T ss_pred CCCEEEEEEEC--CCCceEEe
Confidence 3345778888 56654444
|
|
| >cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.7e-06 Score=52.46 Aligned_cols=24 Identities=46% Similarity=1.020 Sum_probs=22.4
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+..++|||..||+||+||.
T Consensus 10 ~~~Ci~~~~~CDg~~DC~dgsDE~ 33 (35)
T cd00112 10 NGRCIPSSWVCDGEDDCGDGSDEE 33 (35)
T ss_pred CCCeeCHHHcCCCccCCCCCcccc
Confidence 578999999999999999999994
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0082 Score=61.07 Aligned_cols=205 Identities=13% Similarity=0.085 Sum_probs=122.0
Q ss_pred eeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCCC
Q psy17325 152 EGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGSN 228 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~~ 228 (461)
...++.+.++.|+++... ...|.+.++++...+.+.... ......++.|... +|+++- ......|+..++++..
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~--~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGS--KLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCC--EEEEEEccCCCceEEEEECCCCC
Confidence 445666677788666533 347999999876665554322 1233577888755 776653 2334689999998876
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
.+.+... .......++.+.+++||++....+. ..|++.++++...+.
T Consensus 279 ~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~--------------------------------~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 279 LSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGK--------------------------------PQIYKVNVNGGRAER 325 (430)
T ss_pred eEEcccC-CCCcCCeEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCEEE
Confidence 5544332 2223345666667777766432211 247777776555444
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
+..... ....++.|.++.|+++... .....|+..++++...+.+... ......++.+++..|+++..
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~----------~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQ----------DGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEcc----------CCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEe
Confidence 432222 3345677888888776543 1123588888887766655422 12234478778888888754
Q ss_pred C--CCeEEEEEecCCCCeEEE
Q psy17325 388 K--LDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 388 ~--~~~I~~~~~~g~g~~~~~ 406 (461)
. ...|+.+++ +|.....
T Consensus 394 ~~g~~~l~~~~~--~g~~~~~ 412 (430)
T PRK00178 394 QQGRGVLMLVSI--NGRVRLP 412 (430)
T ss_pred cCCceEEEEEEC--CCCceEE
Confidence 3 356888888 5655433
|
|
| >PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.3e-06 Score=53.32 Aligned_cols=26 Identities=46% Similarity=1.137 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+..++|||..||.||+|| ..|
T Consensus 12 ~~~CI~~~~~CDg~~DC~dgsDE-~~C 37 (37)
T PF00057_consen 12 NGQCIPKSWVCDGIPDCPDGSDE-QNC 37 (37)
T ss_dssp TSSEEEGGGTTSSSCSSSSSTTT-SSH
T ss_pred CCCEEChHHcCCCCCCCCCCccc-ccC
Confidence 56799999999999999999999 444
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A .... |
| >PF12662 cEGF: Complement Clr-like EGF-like | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.8e-06 Score=46.94 Aligned_cols=24 Identities=46% Similarity=1.018 Sum_probs=22.2
Q ss_pred CccccCCCCeeeeCCCCceeeccc
Q psy17325 90 SYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 90 ~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
+|.|.|++||++..++++|.+|+|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 589999999999999999999875
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0044 Score=57.93 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=115.3
Q ss_pred ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-----CCCcEEEEec-------ccccceeEEeeccCCeeEE
Q psy17325 187 AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-----GSNRSTIIST-------KIYWPNGLTLDIATRRVYF 254 (461)
Q Consensus 187 ~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-----G~~~~~i~~~-------~~~~P~glavD~~~~~ly~ 254 (461)
....+.+|+||++-|. + .++++| .........+.+ |.....++.- ....|.|+++...... -+
T Consensus 18 tDp~L~N~WGia~~p~-~--~~WVad-ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F-~v 92 (336)
T TIGR03118 18 VDPGLRNAWGLSYRPG-G--PFWVAN-TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF-VV 92 (336)
T ss_pred cCccccccceeEecCC-C--CEEEec-CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce-EE
Confidence 4456789999999995 4 577888 444455555554 4333323221 2357999999854331 12
Q ss_pred ecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC--CCC---ceEEEEeCCe----eeeEEEecc--
Q psy17325 255 ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM--DGS---NASILVSGQL----YEALALDLE-- 323 (461)
Q Consensus 255 ~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~--~g~---~~~~l~~~~~----p~~iavd~~-- 323 (461)
+..... ..-+.||-++.+. |.--++ +-+ ...+++.... -.|+|+-..
T Consensus 93 t~~g~~----------------~~a~Fif~tEdGT------isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~ 150 (336)
T TIGR03118 93 SGEGIT----------------GPSRFLFVTEDGT------LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGG 150 (336)
T ss_pred cCCCcc----------------cceeEEEEeCCce------EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCC
Confidence 221110 0011244444433 433332 222 1223333221 677887754
Q ss_pred CCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe-----e---CCCCCceeEEEecCCCeEEEEc---------
Q psy17325 324 NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII-----S---TKIYWPNGLTLDIATRRVYFAD--------- 386 (461)
Q Consensus 324 ~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~-----~---~~l~~p~glaiD~~~~~ly~~d--------- 386 (461)
..+||-+|.. +++|... |++..++.+ + ..-.-|.+|.- .+++|||+-
T Consensus 151 ~~~LYaadF~------------~g~IDVF--d~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d 214 (336)
T TIGR03118 151 GDYLYAANFR------------QGRIDVF--KGSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRND 214 (336)
T ss_pred CceEEEeccC------------CCceEEe--cCccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccc
Confidence 4566666655 7777765 333332221 1 22335788877 789999983
Q ss_pred ----CCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee-----eCCEEEEEeCCCceee
Q psy17325 387 ----SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL-----ENGMLYYSTEGAEFLK 447 (461)
Q Consensus 387 ----~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~lYwtd~~~~~i~ 447 (461)
++.+.|..+++ +|...+.+.+... +. -+.++++++ +.+.|.+-+-++++|-
T Consensus 215 ~v~G~G~G~VdvFd~--~G~l~~r~as~g~-LN-------aPWG~a~APa~FG~~sg~lLVGNFGDG~In 274 (336)
T TIGR03118 215 EVAGAGLGYVNVFTL--NGQLLRRVASSGR-LN-------APWGLAIAPESFGSLSGALLVGNFGDGTIN 274 (336)
T ss_pred cccCCCcceEEEEcC--CCcEEEEeccCCc-cc-------CCceeeeChhhhCCCCCCeEEeecCCceeE
Confidence 34578999999 7877665544322 21 123445543 4588999998888774
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.014 Score=59.04 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=119.7
Q ss_pred eeeeeecCCeEEEEeCCC--CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCCCc
Q psy17325 153 GLAYDWIGGHIYWLDSRL--NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGSNR 229 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~--~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~~~ 229 (461)
..++.+.++.|+++.... ..|.+.++.+.....+.... ....++++.|... .|+++. ......|+..++++...
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGS--KLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCC--EEEEEECCCCCccEEEEECCCCCE
Confidence 445666677888876543 57888998765544443221 2345678888755 777653 23346899999987655
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+.+... .......++.+.+++|+++...... ..|++.++++...+.+
T Consensus 271 ~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~--------------------------------~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 271 TRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGS--------------------------------PQIYMMDADGGEVRRL 317 (417)
T ss_pred EECCCC-CCCCCCEEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCEEEe
Confidence 444322 1122234555666777765433211 2477777776655444
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
..... ...+++.|.++.|+++... +...+|+..++++...+.+... ......++.++++.|+++...
T Consensus 318 ~~~~~~~~~~~~spdg~~i~~~~~~----------~~~~~i~~~d~~~~~~~~l~~~--~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 318 TFRGGYNASPSWSPDGDLIAFVHRE----------GGGFNIAVMDLDGGGERVLTDT--GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred ecCCCCccCeEECCCCCEEEEEEcc----------CCceEEEEEeCCCCCeEEccCC--CCCCCceECCCCCEEEEEEeC
Confidence 43322 5567788888877776543 1134678888877555544422 123445677778888887554
Q ss_pred C--CeEEEEEecCCCCeEE
Q psy17325 389 L--DFIDFCNYDGTGRQQV 405 (461)
Q Consensus 389 ~--~~I~~~~~~g~g~~~~ 405 (461)
. ..++.++. +|....
T Consensus 386 ~~~~~l~~~~~--~g~~~~ 402 (417)
T TIGR02800 386 GGRGVLGLVST--DGRFRA 402 (417)
T ss_pred CCcEEEEEEEC--CCceee
Confidence 3 34666666 565543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0026 Score=56.94 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=57.6
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCC-C--CeEEEEEccccceeeccCCCCCcceEEE
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGT-G--RQQVILIDLMVEFTNDLMGDNGVPALAL 429 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (461)
.+-|...+.+. ..+.-|+||+.|.+.+..|++|+.+..|...+.|-. | .++.++.+.....+ ....++.+++|
T Consensus 144 ~~~~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---~e~~~PDGm~I 219 (310)
T KOG4499|consen 144 WLAGHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---FESLEPDGMTI 219 (310)
T ss_pred eccCCCceeee-hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC---cCCCCCCcceE
Confidence 34444455544 778889999999999999999999999977775422 2 34444443222111 01112335555
Q ss_pred eeeCCEEEEEeCCCcee
Q psy17325 430 DLENGMLYYSTEGAEFL 446 (461)
Q Consensus 430 ~~~~~~lYwtd~~~~~i 446 (461)
+. +|.||++.++.++|
T Consensus 220 D~-eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 220 DT-EGNLYVATFNGGTV 235 (310)
T ss_pred cc-CCcEEEEEecCcEE
Confidence 33 68999999998876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.036 Score=56.31 Aligned_cols=205 Identities=9% Similarity=0.057 Sum_probs=115.1
Q ss_pred eeeecCCe---EEEEeCC-CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe-ecCCCCcEEEEec--CC-
Q psy17325 155 AYDWIGGH---IYWLDSR-LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT-DWGENPRIERIGM--DG- 226 (461)
Q Consensus 155 avd~~~~~---ly~~d~~-~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t-d~~~~~~I~~~~~--dG- 226 (461)
++.+.++. +|++... ...|.+.+++|...+.+.... ......++.|... +|.++ +...+..|+...+ ++
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSPDG~--~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSPRKK--LLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECCCCC--EEEEEECCCCCcceeEEEeecccC
Confidence 44444443 3455432 457999999988766665422 2234567888755 66554 3223356666533 32
Q ss_pred --CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 227 --SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 227 --~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
...+.+...........++.+.+++|+++....+. ..|++.++++.
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~--------------------------------~~ly~~~~~~~ 315 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR--------------------------------PRIYIMQIDPE 315 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC--------------------------------ceEEEEECccc
Confidence 22233433222233456778777777776433221 24666666532
Q ss_pred --ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 305 --NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 305 --~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
..+.+..... ....+..|.++.|+++... .....|+..++++...+.+. .........++.++++.
T Consensus 316 g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~----------~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 316 GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI----------KGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLH 384 (428)
T ss_pred ccceEEeccCCCCccceeECCCCCEEEEEEcC----------CCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCE
Confidence 2333322212 3456778888877765432 12357888888887777665 33334566788777788
Q ss_pred EEEEcC--CCCeEEEEEecCCCCeEEEE
Q psy17325 382 VYFADS--KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 382 ly~~d~--~~~~I~~~~~~g~g~~~~~~ 407 (461)
|+++-. +...|+.+++ +|.....+
T Consensus 385 L~f~~~~~g~~~L~~vdl--~~g~~~~L 410 (428)
T PRK01029 385 LVYSAGNSNESELYLISL--ITKKTRKI 410 (428)
T ss_pred EEEEECCCCCceEEEEEC--CCCCEEEe
Confidence 887633 3467999999 44443333
|
|
| >smart00192 LDLa Low-density lipoprotein receptor domain class A | Back alignment and domain information |
|---|
Probab=97.68 E-value=1.9e-05 Score=48.56 Aligned_cols=23 Identities=52% Similarity=1.151 Sum_probs=21.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADE 24 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de 24 (461)
++.||+..++|||..||+||+||
T Consensus 11 ~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 11 NGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCEECchhhCCCcCcCcCCCCC
Confidence 57899999999999999999997
|
Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00017 Score=42.50 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=25.2
Q ss_pred CCCceeEEEecCCCeEEEEcCCCCeEEEE
Q psy17325 367 IYWPNGLTLDIATRRVYFADSKLDFIDFC 395 (461)
Q Consensus 367 l~~p~glaiD~~~~~ly~~d~~~~~I~~~ 395 (461)
+..|.||++| .+|.||++|.+.++|..+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4689999999 999999999999998764
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0094 Score=61.67 Aligned_cols=172 Identities=9% Similarity=0.126 Sum_probs=98.7
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEc--CCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLD--PSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d--~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~ 235 (461)
.++.||+-|..+.||-|++++-.....++. .+.....|+.+. |.++ ++|-.. . +++-+.
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~--yv~~~~---e---~~~Plp---------- 201 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTG--YVFCNG---E---FRIPLP---------- 201 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCcc--EEEeCc---c---cccccC----------
Confidence 377899999999999999999877665554 344556777776 6666 766532 1 111111
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE---EeC
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL---VSG 312 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l---~~~ 312 (461)
+.++.|+-++... +.+.+.+.+ ..+++ .-.
T Consensus 202 -----------nDGk~l~~~~ey~----------------------------------~~vSvID~e--tmeV~~qV~Vd 234 (635)
T PRK02888 202 -----------NDGKDLDDPKKYR----------------------------------SLFTAVDAE--TMEVAWQVMVD 234 (635)
T ss_pred -----------CCCCEeeccccee----------------------------------EEEEEEECc--cceEEEEEEeC
Confidence 1112222221111 112222111 11221 112
Q ss_pred CeeeeEEEeccCCeEEEeecC-------------ceeeEEEeecCC--------------CCceEEEeecCCC-----eE
Q psy17325 313 QLYEALALDLENGMLYYSTLK-------------CTRWLFWTDWGE--------------NPRIERIGMDGSN-----RS 360 (461)
Q Consensus 313 ~~p~~iavd~~~~~lY~t~~~-------------~~~~l~~~d~~~--------------~~~I~~~~~dG~~-----~~ 360 (461)
+.|+.+++++.++.+|+|... ...++...+|.. .++|-. +|+.. ..
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~V--ID~~t~~~~~~~ 312 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPV--VDGRKAANAGSA 312 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEE--EECCccccCCcc
Confidence 238888888888888887522 122444444421 112222 23333 22
Q ss_pred EEe-eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 361 TII-STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 361 ~l~-~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++. -.--..|.|++++++++++|++....+.+..+++
T Consensus 313 v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 313 LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 221 1345689999999999999999999999999999
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.091 Score=48.52 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=103.7
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI 232 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i 232 (461)
.+.+.+.++ .+++-...+.|.+.+.+.......+......+..+++.+.. .++++. .....|...++........
T Consensus 56 ~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 56 DVAASADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG---RILSSS-SRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred EEEECCCCC-EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC---CEEEEe-cCCCeEEEEECCCcEEEEE
Confidence 444444333 44444557889999887643322233332457888998873 355554 3346777777763222222
Q ss_pred EecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC-CceEEEEe
Q psy17325 233 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SNASILVS 311 (461)
Q Consensus 233 ~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~~~~l~~ 311 (461)
+......+..+++++.+..|+.+. ..+ .|...++.. .....+..
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~-~~~----------------------------------~i~i~d~~~~~~~~~~~~ 175 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSS-QDG----------------------------------TIKLWDLRTGKCVATLTG 175 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEc-CCC----------------------------------cEEEEEccccccceeEec
Confidence 222234577888887655555443 221 244444442 22222222
Q ss_pred CC-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 312 GQ-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 312 ~~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
.. .+..+++.+.+..|+.+.. .+.|...++............-..+..+++++. +.++++-...+
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~ 241 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSS-------------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDG 241 (289)
T ss_pred CccccceEEECCCcCEEEEecC-------------CCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCCC
Confidence 22 1778888877666665543 344555555432222222122336778888755 66666655678
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
.|...++
T Consensus 242 ~i~i~~~ 248 (289)
T cd00200 242 TIRVWDL 248 (289)
T ss_pred cEEEEEc
Confidence 8888888
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.07 Score=54.27 Aligned_cols=201 Identities=11% Similarity=0.146 Sum_probs=115.2
Q ss_pred eeeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEee-cCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD-WGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td-~~~~~~I~~~~~dG~ 227 (461)
...+++.+.++.|.++... ...|.+.++.+...+.+.... ..-..+++.|... +|+++- ......|+.+++++.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCC--EEEEEEecCCcEEEEEEECCCC
Confidence 4556777777788776543 347999998776554443211 1233578888765 777763 233357899998876
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
..+.+... .......++.+.+++|+++....+. ..|+..+.++...+
T Consensus 283 ~~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~--------------------------------~~I~~~~~~~~~~~ 329 (429)
T PRK01742 283 TPSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGS--------------------------------PQVYRMSASGGGAS 329 (429)
T ss_pred CeEeeccC-CCCcCCEEECCCCCEEEEEECCCCC--------------------------------ceEEEEECCCCCeE
Confidence 65555332 2234567778777777776433221 24666666665544
Q ss_pred EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 308 ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 308 ~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
.+ .... ...++.|.++.|+++.. ..|.+.++.+...+.+. ... .-..+++.+++..|+++..
T Consensus 330 ~l-~~~~-~~~~~SpDG~~ia~~~~--------------~~i~~~Dl~~g~~~~lt-~~~-~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 330 LV-GGRG-YSAQISADGKTLVMING--------------DNVVKQDLTSGSTEVLS-STF-LDESPSISPNGIMIIYSST 391 (429)
T ss_pred Ee-cCCC-CCccCCCCCCEEEEEcC--------------CCEEEEECCCCCeEEec-CCC-CCCCceECCCCCEEEEEEc
Confidence 43 2111 33567777777766532 24555665544433333 221 2245678877778888744
Q ss_pred CC--CeEEEEEecCCCCeEEEE
Q psy17325 388 KL--DFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 ~~--~~I~~~~~~g~g~~~~~~ 407 (461)
.. ..++.++. +|...+.+
T Consensus 392 ~g~~~~l~~~~~--~G~~~~~l 411 (429)
T PRK01742 392 QGLGKVLQLVSA--DGRFKARL 411 (429)
T ss_pred CCCceEEEEEEC--CCCceEEc
Confidence 22 23444566 56655544
|
|
| >KOG1219|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=81.83 Aligned_cols=76 Identities=29% Similarity=0.790 Sum_probs=58.8
Q ss_pred CCCC--CCcccCCCCCCCCCceeCC-CCceEeCCCCCeecCCCCcee-cCcceecCCcc--cCceeeccCCccccCCCCe
Q psy17325 26 PGCD--LAECKHKFGLCSNTCHPTP-LGALCTCPPGEILSNDSVTCQ-DMNECEQPGYC--SQMCTNTKGSYICSCNEGY 99 (461)
Q Consensus 26 ~~C~--~~~C~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C--~~~C~~~~g~~~C~C~~g~ 99 (461)
++|- .+.|..++++-...|...+ ++|.|.|++.|. |++|+ +++.|. ..+| ...|....++|.|.|+.||
T Consensus 3858 pgC~l~~d~C~~npCqhgG~C~~~~~ggy~CkCpsqys----G~~CEi~~epC~-snPC~~GgtCip~~n~f~CnC~~gy 3932 (4289)
T KOG1219|consen 3858 PGCSLLTDPCNDNPCQHGGTCISQPKGGYKCKCPSQYS----GNHCEIDLEPCA-SNPCLTGGTCIPFYNGFLCNCPNGY 3932 (4289)
T ss_pred ccccccccccccCcccCCCEecCCCCCceEEeCccccc----Cccccccccccc-CCCCCCCCEEEecCCCeeEeCCCCc
Confidence 3562 3678877755566798776 789999999995 78997 677886 4456 4589999999999999999
Q ss_pred eeeCCCCceee
Q psy17325 100 VLEYDNHTCKA 110 (461)
Q Consensus 100 ~l~~~~~~C~~ 110 (461)
.++.|..
T Consensus 3933 ----TG~~Ce~ 3939 (4289)
T KOG1219|consen 3933 ----TGKRCEA 3939 (4289)
T ss_pred ----cCceeec
Confidence 4666754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.11 Score=47.84 Aligned_cols=193 Identities=11% Similarity=0.104 Sum_probs=103.1
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
...+++.+.++.|+ +-...+.|.+.+.+.................+.+.+... .|+.+. ....|...++......
T Consensus 12 i~~~~~~~~~~~l~-~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~--~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 12 VTCVAFSPDGKLLA-TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLASGS--SDKTIRLWDLETGECV 86 (289)
T ss_pred EEEEEEcCCCCEEE-EeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCC--EEEEEc--CCCeEEEEEcCcccce
Confidence 44556655444444 334467888888765543333322222334788887755 666654 3467777777753332
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
..+......+..+++.+. ++++++....+ .|...++........+
T Consensus 87 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~----------------------------------~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPD-GRILSSSSRDK----------------------------------TIKVWDVETGKCLTTL 131 (289)
T ss_pred EEEeccCCcEEEEEEcCC-CCEEEEecCCC----------------------------------eEEEEECCCcEEEEEe
Confidence 222222335677777765 44544444332 3444444422222222
Q ss_pred eCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 311 SGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 311 ~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
.... +..+++++.+..|+.+. . .+.|...++............-.....+++.+.+..|+.+..
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~-~------------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 197 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSS-Q------------DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS- 197 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEc-C------------CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-
Confidence 2111 77888888755555443 1 334555555422222222233345778888866667777755
Q ss_pred CCeEEEEEe
Q psy17325 389 LDFIDFCNY 397 (461)
Q Consensus 389 ~~~I~~~~~ 397 (461)
.+.|...++
T Consensus 198 ~~~i~i~d~ 206 (289)
T cd00200 198 DGTIKLWDL 206 (289)
T ss_pred CCcEEEEEC
Confidence 678888888
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.038 Score=54.54 Aligned_cols=274 Identities=17% Similarity=0.156 Sum_probs=133.8
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-------EEEecCCCCCceeEEEcCCC---CceEEEEeec
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-------IVLAKDNITQPRGMMLDPSP---GTRWLFWTDW 213 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-------~~l~~~~~~~p~~ia~d~~~---g~~~ly~td~ 213 (461)
+..||.+|.+++..+.+ .+.++....+.+..+...+... .++... -..-.++++++.- ...++|++-.
T Consensus 62 ~a~gLe~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~-~~Gll~~al~~~fa~~~~~~~~~a~~ 139 (399)
T COG2133 62 VAQGLEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRG-QGGLLDIALSPDFAQGRLVYFGISEP 139 (399)
T ss_pred ccccccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEecc-CCCccceEecccccccceeeeEEEee
Confidence 45678888888888766 6777766657666555333221 111111 1112233333221 1112222221
Q ss_pred CCC----CcEEEEecC-CCC----cEEEEec----ccccceeEEeeccCCeeEEecCCCceeeec-ccceeeeeccceee
Q psy17325 214 GEN----PRIERIGMD-GSN----RSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCK-SLEIKTNVNYSTIF 279 (461)
Q Consensus 214 ~~~----~~I~~~~~d-G~~----~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~-~~~~~~~v~~~~~~ 279 (461)
... .++.++.++ |.. ..+|+.. ...+-.-|++++.+ +||++-.....-... +.. ..-
T Consensus 140 ~~~~~~~n~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~--------~~~ 210 (399)
T COG2133 140 GGGLYVANRVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNV--------SLA 210 (399)
T ss_pred cCCceEEEEEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCC-cEEEEeCCCCCcccccCcc--------ccc
Confidence 111 345555555 311 2333332 23445569999866 999986655111100 000 000
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCc-----------------ee--eEE
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKC-----------------TR--WLF 339 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~-----------------~~--~l~ 339 (461)
.++. .... ..+...+.++...++.....- |.|++++|.+|.||.++.+. .+ +.|
T Consensus 211 Gk~~--r~~~----a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~ 284 (399)
T COG2133 211 GKVL--RIDR----AGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAY 284 (399)
T ss_pred ccee--eecc----CcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceec
Confidence 0000 0000 124445555666555444333 99999999999999999872 11 333
Q ss_pred EeecCCCCceEEEeecCCCeEEEee-----CCCCCceeEEEecCC--------CeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 340 WTDWGENPRIERIGMDGSNRSTIIS-----TKIYWPNGLTLDIAT--------RRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 340 ~~d~~~~~~I~~~~~dG~~~~~l~~-----~~l~~p~glaiD~~~--------~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
|-.- ..++. .+++.....+.. ..---|.||++ .+ +.||++.-+.-.+.+.++ +|..+.+
T Consensus 285 ~G~~-~~g~~---~~~~~~~~~~~~p~~~~~~h~ApsGmaF--y~G~~fP~~r~~lfV~~hgsw~~~~~~~--~g~~~~~ 356 (399)
T COG2133 285 FGQN-YDGRA---IPDGTVVAGAIQPVYTWAPHIAPSGMAF--YTGDLFPAYRGDLFVGAHGSWPVLRLRP--DGNYKVV 356 (399)
T ss_pred cCcc-cCccc---cCCCcccccccCCceeeccccccceeEE--ecCCcCccccCcEEEEeecceeEEEecc--CCCcceE
Confidence 3110 11111 122322222221 22235789999 43 689999887777888888 5653333
Q ss_pred EEccccceeeccCCCCCcceEEEeee-CCEEEEEeCC-Ccee-ecc
Q psy17325 407 LIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEG-AEFL-KTP 449 (461)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~-~~~i-~~~ 449 (461)
+...... +. .-.|.++++. +|.||+++.. +++| |+.
T Consensus 357 ~~~fl~~---d~----~gR~~dV~v~~DGallv~~D~~~g~i~Rv~ 395 (399)
T COG2133 357 LTGFLSG---DL----GGRPRDVAVAPDGALLVLTDQGDGRILRVS 395 (399)
T ss_pred EEEEEec---CC----CCcccceEECCCCeEEEeecCCCCeEEEec
Confidence 3221111 00 0125666554 5788887776 5555 553
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.12 Score=48.94 Aligned_cols=68 Identities=9% Similarity=0.195 Sum_probs=50.5
Q ss_pred CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEE
Q psy17325 358 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLY 437 (461)
Q Consensus 358 ~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lY 437 (461)
.-++++ +++..|.+--. .+++||++|++.+.|.+++++ +|....+..- ++. |.+|++.++.+|
T Consensus 194 s~evl~-~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~-~G~~e~Va~v--pG~-----------~rGL~f~G~llv 256 (335)
T TIGR03032 194 SGEVVA-SGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQ-AGKFQPVAFL--PGF-----------TRGLAFAGDFAF 256 (335)
T ss_pred CCCEEE-cCccCCcCCcE--eCCeEEEEECCCCEEEEEcCC-CCcEEEEEEC--CCC-----------CcccceeCCEEE
Confidence 335555 88999999988 899999999999999999993 4777555332 222 467777777888
Q ss_pred EEeCC
Q psy17325 438 YSTEG 442 (461)
Q Consensus 438 wtd~~ 442 (461)
+.=++
T Consensus 257 VgmSk 261 (335)
T TIGR03032 257 VGLSK 261 (335)
T ss_pred EEecc
Confidence 75443
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=38.70 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=24.4
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEE
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEV 175 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~ 175 (461)
|..|.|||+| ..++||++|.++++|.+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 4579999999 79999999999999976
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG4260|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00048 Score=62.34 Aligned_cols=49 Identities=41% Similarity=0.839 Sum_probs=40.3
Q ss_pred ceE-eCCCCCeecCCCCceecCcceecC-Ccc--cCceeeccCCccccCCCCeee
Q psy17325 51 ALC-TCPPGEILSNDSVTCQDMNECEQP-GYC--SQMCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 51 ~~C-~C~~G~~l~~~~~~C~d~~eC~~~-~~C--~~~C~~~~g~~~C~C~~g~~l 101 (461)
..| .|..||.+. ...|.|+|||... ..| +++|+|+.|+|.|.+.+||+.
T Consensus 217 k~C~kCkkGW~ld--e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 217 KGCSKCKKGWKLD--EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred CChhhhcccceec--ccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 345 699999874 6789999999844 456 469999999999999999965
|
|
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00099 Score=72.70 Aligned_cols=76 Identities=29% Similarity=0.701 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCC--CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecC---cceecCCccc--Cceeecc-
Q psy17325 17 DCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM---NECEQPGYCS--QMCTNTK- 88 (461)
Q Consensus 17 dC~dg~de~~~C--~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~---~eC~~~~~C~--~~C~~~~- 88 (461)
.|+.|+-. ..| ++++|-.+++.-...|....++|+|.|.+||. |.+|+-. -.| -++.|. ..|++..
T Consensus 1225 rCPpGFTg-d~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~t----GehCEvs~~agrC-vpGvC~nggtC~~~~n 1298 (2531)
T KOG4289|consen 1225 RCPPGFTG-DYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFT----GEHCEVSARAGRC-VPGVCKNGGTCVNLLN 1298 (2531)
T ss_pred eCCCCCCc-ccccchhHhhhcCCCCCCCceEEecCceeEEecCCcc----ccceeeecccCcc-ccceecCCCEEeecCC
Confidence 48988855 578 47899888766667899999999999999995 7888732 234 356674 4888765
Q ss_pred CCccccCCCC
Q psy17325 89 GSYICSCNEG 98 (461)
Q Consensus 89 g~~~C~C~~g 98 (461)
|++.|.|+.|
T Consensus 1299 ggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1299 GGFCCHCPYG 1308 (2531)
T ss_pred CceeccCCCc
Confidence 7889999998
|
|
| >KOG4260|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00032 Score=63.39 Aligned_cols=76 Identities=32% Similarity=0.729 Sum_probs=56.0
Q ss_pred CCCCCC--CCCCCC-CCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCceecCcceec-CCcc---cCceeec
Q psy17325 17 DCPNGA--DEGPGC-DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ-PGYC---SQMCTNT 87 (461)
Q Consensus 17 dC~dg~--de~~~C-~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~-~~~C---~~~C~~~ 87 (461)
.|..|. || ..| |++||...+..|.. .|+|+.++|.|.+.+||.. ++++|.- ...| ...|.|+
T Consensus 221 kCkkGW~lde-~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni 291 (350)
T KOG4260|consen 221 KCKKGWKLDE-EGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNI 291 (350)
T ss_pred hhcccceecc-cccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccC
Confidence 455554 45 356 89999987777864 6999999999999999963 2556642 1233 2478999
Q ss_pred cCCccccCCCCeee
Q psy17325 88 KGSYICSCNEGYVL 101 (461)
Q Consensus 88 ~g~~~C~C~~g~~l 101 (461)
.++|.|.|+.++..
T Consensus 292 ~~~~r~v~f~~~~~ 305 (350)
T KOG4260|consen 292 DGQYRCVCFSGLII 305 (350)
T ss_pred CccEEEEeccccee
Confidence 99999999998753
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.41 Score=44.55 Aligned_cols=196 Identities=18% Similarity=0.168 Sum_probs=109.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCC--eEEEEeCCCCcE-EE-EecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLN--RIEVCDENGTNR-IV-LAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~--~I~~~~~~G~~~-~~-l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..+|+.++ ..+.||-+-...+ +|.+.++..... .. -+... .-..||++-. + .||.--|.+ ......+.+
T Consensus 46 FTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~--d--~l~qLTWk~-~~~f~yd~~ 118 (264)
T PF05096_consen 46 FTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILG--D--KLYQLTWKE-GTGFVYDPN 118 (264)
T ss_dssp EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEET--T--EEEEEESSS-SEEEEEETT
T ss_pred cCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEEC--C--EEEEEEecC-CeEEEEccc
Confidence 45778774 2678998887766 578888775442 22 22222 2377899873 4 899888865 466666766
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.-....-+.- .....||+-| ++.|+.+|... .||+.|.....+.++|.+. .+|..
T Consensus 119 tl~~~~~~~y-~~EGWGLt~d--g~~Li~SDGS~---------------------~L~~~dP~~f~~~~~i~V~-~~g~p 173 (264)
T PF05096_consen 119 TLKKIGTFPY-PGEGWGLTSD--GKRLIMSDGSS---------------------RLYFLDPETFKEVRTIQVT-DNGRP 173 (264)
T ss_dssp TTEEEEEEE--SSS--EEEEC--SSCEEEE-SSS---------------------EEEEE-TTT-SEEEEEE-E-ETTEE
T ss_pred cceEEEEEec-CCcceEEEcC--CCEEEEECCcc---------------------ceEEECCcccceEEEEEEE-ECCEE
Confidence 4322111111 1345689976 78899999865 4666666554333344332 12211
Q ss_pred eEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-C--------------CCCCc
Q psy17325 306 ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-T--------------KIYWP 370 (461)
Q Consensus 306 ~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~--------------~l~~p 370 (461)
..- .+- +...+|.||=.-.. +..|.+.++.-....-.++ + ...--
T Consensus 174 v~~------LNE--LE~i~G~IyANVW~------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 174 VSN------LNE--LEYINGKIYANVWQ------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp ---------EEE--EEEETTEEEEEETT------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred CCC------cEe--EEEEcCEEEEEeCC------------CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 111 112 23346666543322 5677777764443333321 0 12336
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+|||.|+.++++|++-..=.+++.+.+
T Consensus 234 NGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp EEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred EeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 899999999999999877788888877
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00062 Score=62.73 Aligned_cols=43 Identities=40% Similarity=0.855 Sum_probs=36.7
Q ss_pred CCCceecCccee-cCCcccCceeeccCCccccCCCCeeeeCCCC
Q psy17325 64 DSVTCQDMNECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNH 106 (461)
Q Consensus 64 ~~~~C~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~ 106 (461)
.+..|.++++|. .+..|.+.|.++.|+|.|.|++||.+..+++
T Consensus 180 ~~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 356899999997 3457999999999999999999999877654
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.29 Score=48.14 Aligned_cols=127 Identities=24% Similarity=0.454 Sum_probs=71.5
Q ss_pred CCCCCceeEEE--cCCCCceEEEEeecCCCCcEEEEec--CCCCc--EEEEec--ccccceeEEeeccCCeeEEecCCCc
Q psy17325 189 DNITQPRGMML--DPSPGTRWLFWTDWGENPRIERIGM--DGSNR--STIIST--KIYWPNGLTLDIATRRVYFADSKLD 260 (461)
Q Consensus 189 ~~~~~p~~ia~--d~~~g~~~ly~td~~~~~~I~~~~~--dG~~~--~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~ 260 (461)
..+..|.|+++ ++..|+-+.|+.+ ....+....+ ++... ..++.. --..|.|+++|...+.||+++...+
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G 230 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG 230 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE
T ss_pred cccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccE
Confidence 35567899998 4566733455555 2344555444 34432 223322 1247999999999999999998863
Q ss_pred eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC--CC-ceEEEEe---CCe---eeeEEEec---cCCeEE
Q psy17325 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD--GS-NASILVS---GQL---YEALALDL---ENGMLY 328 (461)
Q Consensus 261 ~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~--g~-~~~~l~~---~~~---p~~iavd~---~~~~lY 328 (461)
|++...+ +. .++.+.. ..+ .+||++=. ..|+|.
T Consensus 231 -----------------------------------IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 231 -----------------------------------IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp -----------------------------------EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEE
T ss_pred -----------------------------------EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEE
Confidence 5665554 33 3444422 123 88999843 346888
Q ss_pred EeecCceeeEEEeecCCCCceEEE
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
+|+.+...|..|--.+.+.-+-++
T Consensus 276 vSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEcCCCCeEEEEecCCCCcccceE
Confidence 888886677777655544334444
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.39 Score=48.58 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=112.7
Q ss_pred eeeeeeecCCeEEEEeC----CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CC-CcEEEEecC
Q psy17325 152 EGLAYDWIGGHIYWLDS----RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-EN-PRIERIGMD 225 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~----~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~-~~I~~~~~d 225 (461)
.|+...+.+..+|++.. ...++...+.||.....+..... ....-+.-+... .+.+..+. .. ++|+..+++
T Consensus 150 t~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~-~~~~p~ws~~~~--~~~y~~f~~~~~~~i~~~~l~ 226 (425)
T COG0823 150 TGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGS-LILTPAWSPDGK--KLAYVSFELGGCPRIYYLDLN 226 (425)
T ss_pred cCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCc-ceeccccCcCCC--ceEEEEEecCCCceEEEEecc
Confidence 34444555666776655 45678888888887766654321 111112222222 33333322 22 679999999
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
...+..++... ..-...++-+.+++|.++-...+. ..|+..+++++.
T Consensus 227 ~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~--------------------------------~~iy~~dl~~~~ 273 (425)
T COG0823 227 TGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGS--------------------------------PDIYLMDLDGKN 273 (425)
T ss_pred CCccceeeccC-CccCCccCCCCCCEEEEEECCCCC--------------------------------ccEEEEcCCCCc
Confidence 88777777631 222334556667777776655543 358888888887
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
...+..... -..=.+.|.+.+|+++ +|.+..+.|++++++|+..+-+. .......--.+.+++++|-+
T Consensus 274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~----------Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 274 LPRLTNGFGINTSPSWSPDGSKIVFT----------SDRGGRPQIYLYDLEGSQVTRLT-FSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred ceecccCCccccCccCCCCCCEEEEE----------eCCCCCcceEEECCCCCceeEee-ccCCCCcCccCCCCCCEEEE
Confidence 544333221 1223455666666654 56667889999999999886665 33333333344545555555
Q ss_pred EcCCCCe--EEEEEe
Q psy17325 385 ADSKLDF--IDFCNY 397 (461)
Q Consensus 385 ~d~~~~~--I~~~~~ 397 (461)
.....+. |...++
T Consensus 343 ~~~~~g~~~i~~~~~ 357 (425)
T COG0823 343 ESSSGGQWDIDKNDL 357 (425)
T ss_pred EeccCCceeeEEecc
Confidence 4432233 555555
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.54 Score=43.79 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=80.6
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..-||+++- ++.||..-...+..++.+++.-....-+.- .....||+-|.. .|+.|| ++ .+|+..+...-.
T Consensus 90 ~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~----~Li~SD-GS-~~L~~~dP~~f~ 160 (264)
T PF05096_consen 90 YFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSDGK----RLIMSD-GS-SRLYFLDPETFK 160 (264)
T ss_dssp --EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEECSS----CEEEE--SS-SEEEEE-TTT-S
T ss_pred ccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEcCCC----EEEEEC-Cc-cceEEECCcccc
Confidence 356888884 889999999999999999875433222221 246899998743 799999 54 588877765322
Q ss_pred c-EEEEecccccceeE--EeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 229 R-STIISTKIYWPNGL--TLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 229 ~-~~i~~~~~~~P~gl--avD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
. ..+--..-..|... .+.+.++.||---..++ .|.+.++....
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td----------------------------------~I~~Idp~tG~ 206 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD----------------------------------RIVRIDPETGK 206 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEETTEEEEEETTSS----------------------------------EEEEEETTT-B
T ss_pred eEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC----------------------------------eEEEEeCCCCe
Confidence 2 22211111122211 22334566554333332 46666665444
Q ss_pred eEEEEe-----------------CCeeeeEEEeccCCeEEEeecC
Q psy17325 306 ASILVS-----------------GQLYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 306 ~~~l~~-----------------~~~p~~iavd~~~~~lY~t~~~ 333 (461)
+.-.+. ..+.+|||.||..+.||+|-..
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 443331 1127899999999999998766
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.72 Score=44.16 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=76.8
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
++.--+..+..+|||+. +..|.+-+.+..|.+.|+.......-+.+.+...+++++.+..- +||-+- ....|...
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp--YlFs~g--edk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP--YLFSAG--EDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc--eEEEec--CCCeeEEE
Confidence 34445668889999974 78888999999999999876665555666677899999999877 888653 55778887
Q ss_pred ecCCCCcEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 223 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
+|.-.....-....+.....|++.|.-+. .++-...
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldv-l~t~grD 256 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDV-LVTGGRD 256 (460)
T ss_pred echhhhhHHHhccccceeEEEecccccee-EEecCCc
Confidence 77642211112224556677888875444 4444443
|
|
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0044 Score=39.37 Aligned_cols=35 Identities=40% Similarity=0.851 Sum_probs=24.4
Q ss_pred CCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCce
Q psy17325 30 LAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 30 ~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
+++|... ..|.+ .|.+..++|.|.|++||. ++..|
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 4566542 34654 799999999999999986 34555
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.32 E-value=1 Score=44.38 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=63.8
Q ss_pred eeeEEE--eccCCeEEEeecCceeeEEEeecCCCCceEEEee--cCCC--eEEEe--eCCCCCceeEEEecCCCeEEEEc
Q psy17325 315 YEALAL--DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM--DGSN--RSTII--STKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 315 p~~iav--d~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~--dG~~--~~~l~--~~~l~~p~glaiD~~~~~ly~~d 386 (461)
|+|+.+ ++..|.+|.--.. ..+.++...+ ++.. .-.++ ..--.+|.|+++|...++||+++
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~-----------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgE 226 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNG-----------KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGE 226 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEE-----------TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEE
T ss_pred ceeeEEeecCCCCcEEEEEec-----------CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEec
Confidence 888886 4556666643221 1344544444 2322 12222 12234899999999999999999
Q ss_pred CCCCeEEEEEecCCCCe-EEEEEc-cccceeeccCCCCCcceEEEeee---CCEEEEEeCCCceee
Q psy17325 387 SKLDFIDFCNYDGTGRQ-QVILID-LMVEFTNDLMGDNGVPALALDLE---NGMLYYSTEGAEFLK 447 (461)
Q Consensus 387 ~~~~~I~~~~~~g~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~~lYwtd~~~~~i~ 447 (461)
.. .-|++++.+.++.. ++.+.. ...++..+ .++++|-.. .++|.+++++++.+.
T Consensus 227 E~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aD------vEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 227 ED-VGIWRYDAEPEGGNDRTLVASADGDGLVAD------VEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp TT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-------EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred Cc-cEEEEEecCCCCCCcceeeecccccccccC------ccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 87 48999998755433 333322 12223322 346677432 369999999998663
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0035 Score=57.72 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=34.3
Q ss_pred CCC-CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCC
Q psy17325 26 PGC-DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSV 66 (461)
Q Consensus 26 ~~C-~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~ 66 (461)
..| +.++|...+..|.+.|.+.+++|.|.|++||.+..+++
T Consensus 182 ~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 182 KICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 357 56789877788999999999999999999998766543
|
Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.012 Score=44.81 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=35.7
Q ss_pred cCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 355 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 355 dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
||++.++++ +++..|+||++|+..+.||+++...+.|.....
T Consensus 42 d~~~~~~va-~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 42 DGKEVKVVA-SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eCCEeEEee-ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 455555555 899999999999999999999999999988776
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.38 Score=50.20 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=46.4
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC---------CeEEEee--CCCCCceeEEEecCCCeEE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS---------NRSTIIS--TKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~---------~~~~l~~--~~l~~p~glaiD~~~~~ly 383 (461)
|+|++++|.+.++|++... ++.+...+..-- -+.+++. .--..|...++| ..|+.|
T Consensus 323 PHGV~vSPDGkylyVankl------------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFD-g~G~ay 389 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKL------------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFD-GRGNAY 389 (635)
T ss_pred ccceEECCCCCEEEEeCCC------------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEEC-CCCCEE
Confidence 9999999999999998766 444444443221 1223331 123359999998 557899
Q ss_pred EEcCCCCeEEEEEe
Q psy17325 384 FADSKLDFIDFCNY 397 (461)
Q Consensus 384 ~~d~~~~~I~~~~~ 397 (461)
.+=.-...|.+.++
T Consensus 390 tslf~dsqv~kwn~ 403 (635)
T PRK02888 390 TTLFLDSQIVKWNI 403 (635)
T ss_pred EeEeecceeEEEeh
Confidence 87555567777776
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.12 E-value=1 Score=42.90 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred ceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE--------EEecCCCCCceeEEEcCCCCceEEEEee
Q psy17325 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI--------VLAKDNITQPRGMMLDPSPGTRWLFWTD 212 (461)
Q Consensus 141 ~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~--------~l~~~~~~~p~~ia~d~~~g~~~ly~td 212 (461)
+....+|--....||+ ..+.++++++.-.-+...+.+-+... .+..++-=+-.|||++- | +--|+|-
T Consensus 95 r~~~~TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~--g-~p~yVTa 169 (335)
T TIGR03032 95 RASYVTGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD--G-EPRYVTA 169 (335)
T ss_pred eeeeeccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC--C-eEEEEEE
Confidence 3333444334444566 57889999988777777776665532 22333334577999963 2 2567776
Q ss_pred cCCC--CcEEEEecC-CCCc-----EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEE
Q psy17325 213 WGEN--PRIERIGMD-GSNR-----STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYW 284 (461)
Q Consensus 213 ~~~~--~~I~~~~~d-G~~~-----~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw 284 (461)
.+.. ..-+|-... |... ..++.+++..|.+--. ..++||+.|...
T Consensus 170 ~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgt------------------------- 222 (335)
T TIGR03032 170 LSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGR------------------------- 222 (335)
T ss_pred eeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCC-------------------------
Confidence 4332 222332221 1111 0122234545554433 356666666665
Q ss_pred EecCCCCcceeeeEEeCCCCceEEEEeC-CeeeeEEEeccCCeEEEeecC
Q psy17325 285 IDEGGNGVPLKIGKANMDGSNASILVSG-QLYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 285 ~d~~~~~~~~~I~~~~~~g~~~~~l~~~-~~p~~iavd~~~~~lY~t~~~ 333 (461)
+++.+.+++....+++..- +.|+||+.. ++.++++-+.
T Consensus 223 ---------Gev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 223 ---------GELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred ---------CEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 5688888874444444443 349999988 8888887654
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >smart00179 EGF_CA Calcium-binding EGF-like domain | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.004 Score=39.56 Aligned_cols=35 Identities=43% Similarity=1.063 Sum_probs=26.1
Q ss_pred CcceecCCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 71 MNECEQPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 71 ~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
+++|.....|.+ .|.+..++|.|.|++||. ++..|
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 566753346754 899999999999999996 34544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.08 E-value=1.5 Score=42.40 Aligned_cols=265 Identities=16% Similarity=0.168 Sum_probs=121.9
Q ss_pred CeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec----CCC----CcEEEEecCCCC
Q psy17325 161 GHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW----GEN----PRIERIGMDGSN 228 (461)
Q Consensus 161 ~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~----~~~----~~I~~~~~dG~~ 228 (461)
.++|+.|.. .+++.++|.+.....-.+..++ -..+++.|..+ .+|.++. +.. ..|...+.....
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk--~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~ 78 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF--LGNVALSPDGK--TIYVAETFYSRGTRGERTDVVEIWDTQTLS 78 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES--SEEEEE-TTSS--EEEEEEEEEEETTEEEEEEEEEEEETTTTE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeeccc--CCceeECCCCC--EEEEEEEEEeccccccceeEEEEEecCcCc
Confidence 456666642 3466666655544444444443 23477888877 8987751 111 233333433322
Q ss_pred c--EEEEecc-----cccceeEEeeccCCeeEEecCCC-ceeeecccceeeeecccee--eeEEEEEecCCC-Cc--cee
Q psy17325 229 R--STIISTK-----IYWPNGLTLDIATRRVYFADSKL-DFIDCKSLEIKTNVNYSTI--FRKLYWIDEGGN-GV--PLK 295 (461)
Q Consensus 229 ~--~~i~~~~-----~~~P~glavD~~~~~ly~~d~~~-~~i~~~~~~~~~~v~~~~~--~~~~yw~d~~~~-~~--~~~ 295 (461)
. +..+... +..++-+++-..++.+|+.+..- ..+.++++..++-+.-..+ --.+|-+..... .+ -++
T Consensus 79 ~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 79 PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGS 158 (342)
T ss_dssp EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSC
T ss_pred ccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCc
Confidence 1 2222221 23566778877789999877543 3445555544443311100 003443332211 00 024
Q ss_pred eeEEeCCCCceEEEEeCCe------e--eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCC-
Q psy17325 296 IGKANMDGSNASILVSGQL------Y--EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK- 366 (461)
Q Consensus 296 I~~~~~~g~~~~~l~~~~~------p--~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~- 366 (461)
+..+.+|-........... | ..=+++..++.+||... ++.|+.+++.|...+..-.-.
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy-------------~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY-------------EGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT-------------TSEEEEEEETTSSEEEEEEEES
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec-------------CCEEEEEeccCCcccccCcccc
Confidence 5555555222221111111 1 01112223344444322 678999999888765543111
Q ss_pred -------CCC-cee---EEEecCCCeEEEEc----CC-----CCeEEEEEecCCCCeEEEEEccccce-eeccCCCCCcc
Q psy17325 367 -------IYW-PNG---LTLDIATRRVYFAD----SK-----LDFIDFCNYDGTGRQQVILIDLMVEF-TNDLMGDNGVP 425 (461)
Q Consensus 367 -------l~~-p~g---laiD~~~~~ly~~d----~~-----~~~I~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~~~~~ 425 (461)
-.| |.| +|++...++||+.= .+ ...|+.+|+ .-..++.-....... +..+.-+ ..
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~--~t~krv~Ri~l~~~~~Si~Vsqd--~~ 301 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL--KTHKRVARIPLEHPIDSIAVSQD--DK 301 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET--TTTEEEEEEEEEEEESEEEEESS--SS
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC--CCCeEEEEEeCCCccceEEEccC--CC
Confidence 122 544 89998999999861 11 126888888 344333222211111 1111111 12
Q ss_pred eEEEee--eCCEEEEEeCCCcee
Q psy17325 426 ALALDL--ENGMLYYSTEGAEFL 446 (461)
Q Consensus 426 ~~~l~~--~~~~lYwtd~~~~~i 446 (461)
|+-++. .++.||+-|..++..
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--E
T ss_pred cEEEEEcCCCCeEEEEeCcCCcE
Confidence 444443 456888888888755
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4289|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0054 Score=67.27 Aligned_cols=48 Identities=33% Similarity=0.950 Sum_probs=39.9
Q ss_pred CCCceEeCCCCCeecCCCCcee-cCcceecCCccc--CceeeccCCccccCCCCee
Q psy17325 48 PLGALCTCPPGEILSNDSVTCQ-DMNECEQPGYCS--QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 48 ~~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~ 100 (461)
.++..|.||+||. +..|+ .+++| ..+.|. ..|....|+|.|.|.+||.
T Consensus 1219 vnglrCrCPpGFT----gd~CeTeiDlC-Ys~pC~nng~C~srEggYtCeCrpg~t 1269 (2531)
T KOG4289|consen 1219 VNGLRCRCPPGFT----GDYCETEIDLC-YSGPCGNNGRCRSREGGYTCECRPGFT 1269 (2531)
T ss_pred cCceeEeCCCCCC----cccccchhHhh-hcCCCCCCCceEEecCceeEEecCCcc
Confidence 4789999999996 55886 57888 456785 4899999999999999994
|
|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0049 Score=38.54 Aligned_cols=34 Identities=38% Similarity=0.693 Sum_probs=21.3
Q ss_pred ccCCCCCCC--CCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 33 CKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 33 C~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|..++..|. ..|.++++++.|.|++||.. ++..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 344455564 36888899999999999973 45444
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.8 Score=41.81 Aligned_cols=124 Identities=14% Similarity=0.242 Sum_probs=81.8
Q ss_pred CCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCccee
Q psy17325 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295 (461)
Q Consensus 216 ~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~ 295 (461)
...+...+.+|...+.+. ..+.....+++++.++.+.+++... .
T Consensus 381 gD~l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vvaNdr~-----------------------------------e 424 (668)
T COG4946 381 GDKLGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVANDRF-----------------------------------E 424 (668)
T ss_pred CceEEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEEcCce-----------------------------------E
Confidence 357777778877655444 4577788889988777777776543 5
Q ss_pred eeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeE
Q psy17325 296 IGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL 373 (461)
Q Consensus 296 I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~gl 373 (461)
|++.+++..+.+++-.... ..++++.|..+.+=++=.. + |+ ...|..++|+|...-.+. +...+-.+=
T Consensus 425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~--g--y~-----tq~Iklydm~~~Kiy~vT-T~ta~DfsP 494 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE--G--YY-----TQSIKLYDMDGGKIYDVT-TPTAYDFSP 494 (668)
T ss_pred EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc--c--ee-----eeeEEEEecCCCeEEEec-CCcccccCc
Confidence 7888888777777665433 6677777766644333221 1 11 346888899886544443 444445556
Q ss_pred EEecCCCeEEEE
Q psy17325 374 TLDIATRRVYFA 385 (461)
Q Consensus 374 aiD~~~~~ly~~ 385 (461)
|+|+++..||+.
T Consensus 495 aFD~d~ryLYfL 506 (668)
T COG4946 495 AFDPDGRYLYFL 506 (668)
T ss_pred ccCCCCcEEEEE
Confidence 899999999996
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.7 Score=43.19 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=88.4
Q ss_pred EEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEE
Q psy17325 165 WLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 244 (461)
Q Consensus 165 ~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~gla 244 (461)
+.+...+.+.+.+.+|.....+ ..++.+..++++++... ++-++. .+..|+.++++..+.+.+-.+.-....+++
T Consensus 376 igt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK--~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~ 450 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGK--KVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFD 450 (668)
T ss_pred EeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCc--EEEEEc--CceEEEEEEecCCCeeEecccccceeEEEE
Confidence 3334445778888887765544 35678899999998755 666665 567899999998888777766666677888
Q ss_pred eeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEecc
Q psy17325 245 LDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLE 323 (461)
Q Consensus 245 vD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~ 323 (461)
+.+.++.|-.+=...-.. ..|...+++|...--+..... -.+-|+||.
T Consensus 451 ~~~nsr~iAYafP~gy~t-------------------------------q~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYT-------------------------------QSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred EcCCceeEEEecCcceee-------------------------------eeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence 887777665544422111 347777888765444443332 556689999
Q ss_pred CCeEEEee
Q psy17325 324 NGMLYYST 331 (461)
Q Consensus 324 ~~~lY~t~ 331 (461)
+++||+-.
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99999743
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.3 Score=43.21 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=93.2
Q ss_pred CCceeEEEcCCCCceEEEEeecCC---CCcEEEEecCCCC----cEEEEe-----cc--------cccceeEEeeccCCe
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGE---NPRIERIGMDGSN----RSTIIS-----TK--------IYWPNGLTLDIATRR 251 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~---~~~I~~~~~dG~~----~~~i~~-----~~--------~~~P~glavD~~~~~ 251 (461)
..-+||++++..+ +++-++|.+. ..++++..++... ...+.. .. ..-+.||++ ...+.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence 4467888887544 2444556443 2457777766411 111111 10 115668899 56888
Q ss_pred eEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE-EeC----------Ce-----e
Q psy17325 252 VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL-VSG----------QL-----Y 315 (461)
Q Consensus 252 ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l-~~~----------~~-----p 315 (461)
+||++..... .+....|.+.+.+|...+.+ +.. .. .
T Consensus 98 ~~is~E~~~~----------------------------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~ 149 (326)
T PF13449_consen 98 FWISSEGGRT----------------------------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGF 149 (326)
T ss_pred EEEEeCCccC----------------------------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCe
Confidence 8888877610 01113577777777664433 111 11 8
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecC-------CCCceEEEeec--CCCeEEEe--eC------CCCCceeEEEecC
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWG-------ENPRIERIGMD--GSNRSTII--ST------KIYWPNGLTLDIA 378 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~-------~~~~I~~~~~d--G~~~~~l~--~~------~l~~p~glaiD~~ 378 (461)
++||+.|.++.||.+... -.+.|-. ...+|.+.+.. |.....++ .. ....+..|+.- .
T Consensus 150 E~la~~~dG~~l~~~~E~----~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~ 224 (326)
T PF13449_consen 150 EGLAVSPDGRTLFAAMES----PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-P 224 (326)
T ss_pred EEEEECCCCCEEEEEECc----cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-C
Confidence 899999988878887554 1111211 12456666654 32222221 11 23445555543 6
Q ss_pred CCeEEEEcCC-------CCeEEEEEec
Q psy17325 379 TRRVYFADSK-------LDFIDFCNYD 398 (461)
Q Consensus 379 ~~~ly~~d~~-------~~~I~~~~~~ 398 (461)
+++|++.+.. ..+|+.+++.
T Consensus 225 d~~lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 225 DGRLLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred CCcEEEEEccCCCCccceEEEEEEEcc
Confidence 6778888665 4578888873
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.3 Score=39.28 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=72.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
-.-+|||+.+|++||-..-..+|+-. .++.+++ +++--.+| .||+.+.....+++....-++...
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE~s--------a~vvgdf-----VV~GCy~g--~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIECS--------AIVVGDF-----VVLGCYSG--GLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceeeee--------eEEECCE-----EEEEEccC--cEEEEEecchhheeeeeehhhhcc
Confidence 34478999999999976655555432 1222222 67777778 899999665567776544433211
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
.-..|+.++.||...... ++|-.|..+. +.|++.+-.|+.
T Consensus 98 -----------~a~~d~~~glIycgshd~---------------------~~yalD~~~~---~cVykskcgG~~----- 137 (354)
T KOG4649|consen 98 -----------RAQCDFDGGLIYCGSHDG---------------------NFYALDPKTY---GCVYKSKCGGGT----- 137 (354)
T ss_pred -----------ceEEcCCCceEEEecCCC---------------------cEEEeccccc---ceEEecccCCce-----
Confidence 123466677777665543 3444444443 356665554442
Q ss_pred eCCeeeeEEEeccCCeEEEeecC
Q psy17325 311 SGQLYEALALDLENGMLYYSTLK 333 (461)
Q Consensus 311 ~~~~p~~iavd~~~~~lY~t~~~ 333 (461)
-.+-++++-.+.||++...
T Consensus 138 ----f~sP~i~~g~~sly~a~t~ 156 (354)
T KOG4649|consen 138 ----FVSPVIAPGDGSLYAAITA 156 (354)
T ss_pred ----eccceecCCCceEEEEecc
Confidence 1233567777888887664
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.5 Score=37.78 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=24.9
Q ss_pred CCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 366 KIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+..-++|||.|+..+++|++-..-..+.-+.+
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred ccccccceeecCcCCeEEEecCcCceeEEEEe
Confidence 45568999999999999999665556666655
|
|
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.032 Score=34.44 Aligned_cols=24 Identities=54% Similarity=1.025 Sum_probs=18.9
Q ss_pred CCCCC-CceeCCCCceEeCCCCCee
Q psy17325 38 GLCSN-TCHPTPLGALCTCPPGEIL 61 (461)
Q Consensus 38 ~~C~~-~C~~~~~~~~C~C~~G~~l 61 (461)
..|.+ .|.+..++|.|.|++||.+
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 45665 6888888899999999864
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.2 Score=46.28 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred eeeEEEeccCCeEEEeecCceeeEE-Eee------cCCCCceEEEeecCC-------CeEEEe-----------------
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLF-WTD------WGENPRIERIGMDGS-------NRSTII----------------- 363 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~-~~d------~~~~~~I~~~~~dG~-------~~~~l~----------------- 363 (461)
|++|+++|.++.||++-+.....+- =.+ ....+.|+|...++. ....++
T Consensus 352 pEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~ 431 (524)
T PF05787_consen 352 PEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCD 431 (524)
T ss_pred ccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCccc
Confidence 9999999999999998766221000 000 012356888877654 222222
Q ss_pred eCCCCCceeEEEecCCCeEEEE-cCCCC
Q psy17325 364 STKIYWPNGLTLDIATRRVYFA-DSKLD 390 (461)
Q Consensus 364 ~~~l~~p~glaiD~~~~~ly~~-d~~~~ 390 (461)
...+..|.+|++|+ .++||++ |....
T Consensus 432 ~~~f~sPDNL~~d~-~G~LwI~eD~~~~ 458 (524)
T PF05787_consen 432 DNGFASPDNLAFDP-DGNLWIQEDGGGS 458 (524)
T ss_pred CCCcCCCCceEECC-CCCEEEEeCCCCC
Confidence 12377899999995 6778776 44443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.60 E-value=4.7 Score=39.06 Aligned_cols=198 Identities=15% Similarity=0.199 Sum_probs=100.2
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCC---------CCeEEEEeCCCCc--EEEEecCC-----CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSR---------LNRIEVCDENGTN--RIVLAKDN-----ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~---------~~~I~~~~~~G~~--~~~l~~~~-----~~~p~~ia~d~~~g~~~ 207 (461)
+..|+. ..+++.+.++.+|.++.- ++-|.+.|...-. .++.+... ...+.-+++-...+ +
T Consensus 33 i~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk--~ 108 (342)
T PF06433_consen 33 IDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK--F 108 (342)
T ss_dssp EEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS--E
T ss_pred eecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc--E
Confidence 444443 236677778888877632 2345566655543 23334422 24566778877766 9
Q ss_pred EEEeecCCCCcEEEEecCCCCcEEEEecccccceeEE-eeccCCeeEEecCCCceeeecccc----ee--e-ee---ccc
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT-LDIATRRVYFADSKLDFIDCKSLE----IK--T-NV---NYS 276 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~gla-vD~~~~~ly~~d~~~~~i~~~~~~----~~--~-~v---~~~ 276 (461)
||+.++.....|..+++.......-+.. |-..- +-..+++.+ +-=..+.+..+.++ .. . .+ .-+
T Consensus 109 ~~V~N~TPa~SVtVVDl~~~kvv~ei~~----PGC~~iyP~~~~~F~-~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d 183 (342)
T PF06433_consen 109 LYVQNFTPATSVTVVDLAAKKVVGEIDT----PGCWLIYPSGNRGFS-MLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD 183 (342)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEEG----TSEEEEEEEETTEEE-EEETTSCEEEEEETSTSSEEEEEEEESSTTTS
T ss_pred EEEEccCCCCeEEEEECCCCceeeeecC----CCEEEEEecCCCceE-EEecCCceEEEEECCCCCEeEeeccccCCCCc
Confidence 9999988778999999987544322221 21111 111122211 11111222222111 10 0 01 001
Q ss_pred eee---------eEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC----------e-ee---eEEEeccCCeEEEeecC
Q psy17325 277 TIF---------RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ----------L-YE---ALALDLENGMLYYSTLK 333 (461)
Q Consensus 277 ~~~---------~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~----------~-p~---~iavd~~~~~lY~t~~~ 333 (461)
.+| ..+||+.-.. .|+.+++.|...+....-. . |- .+|+++..++||+-...
T Consensus 184 p~f~~~~~~~~~~~~~F~Sy~G-----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 184 PLFEHPAYSRDGGRLYFVSYEG-----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp -B-S--EEETTTTEEEEEBTTS-----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred ccccccceECCCCeEEEEecCC-----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 111 1567765555 5888888888765543321 1 54 48999999999996432
Q ss_pred --------ceeeEEEeecCCCCceEEEeec
Q psy17325 334 --------CTRWLFWTDWGENPRIERIGMD 355 (461)
Q Consensus 334 --------~~~~l~~~d~~~~~~I~~~~~d 355 (461)
....+|..|.....+|.|..+.
T Consensus 259 g~~gsHKdpgteVWv~D~~t~krv~Ri~l~ 288 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTHKRVARIPLE 288 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCccCCceEEEEEECCCCeEEEEEeCC
Confidence 1234444455555555555554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.16 E-value=3.6 Score=40.58 Aligned_cols=165 Identities=13% Similarity=0.170 Sum_probs=76.9
Q ss_pred CceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEE
Q psy17325 204 GTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLY 283 (461)
Q Consensus 204 g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~y 283 (461)
|+++||.++...+..++.++++....+.|....-....|..+.+.++.||+.....
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~------------------------ 102 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR------------------------ 102 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTT------------------------
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCC------------------------
Confidence 45588888876678999999998776666553222223555556677776543222
Q ss_pred EEecCCCCcceeeeEEeCCCCceEEEEeCCe---eeeEE-EeccCCeEEE-eecCceeeEEEeec---------CCCCce
Q psy17325 284 WIDEGGNGVPLKIGKANMDGSNASILVSGQL---YEALA-LDLENGMLYY-STLKCTRWLFWTDW---------GENPRI 349 (461)
Q Consensus 284 w~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~---p~~ia-vd~~~~~lY~-t~~~~~~~l~~~d~---------~~~~~I 349 (461)
.+.+++++....++|..-.. ..+-. ++. .+.+++ .......+.--++| ....+|
T Consensus 103 -----------~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 103 -----------SLRRVDLDTLEERVVYEVPDDWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp -----------EEEEEETTT--EEEEEE--TTEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred -----------eEEEEECCcCcEEEEEECCcccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 36777877776666665432 33333 343 333332 21110111111222 124579
Q ss_pred EEEeecCCCeEEEeeCCCCCceeEEEecCCCe-EEEEcC-----CCCeEEEEEecCCCCeEEEE
Q psy17325 350 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRR-VYFADS-----KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~-ly~~d~-----~~~~I~~~~~~g~g~~~~~~ 407 (461)
.++++.+.+.+++. ..-.|-.-+-..+.+.. |-++.. -..+|+.++. +|.+...+
T Consensus 171 ~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--dg~~~~~v 231 (386)
T PF14583_consen 171 FTIDLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--DGSNVKKV 231 (386)
T ss_dssp EEEETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--TS---EES
T ss_pred EEEECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--CCCcceee
Confidence 99999988888887 34344444555444433 334422 2458899998 45544433
|
|
| >PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.033 Score=34.81 Aligned_cols=30 Identities=50% Similarity=1.050 Sum_probs=20.4
Q ss_pred CCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 77 PGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 77 ~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
++.|+. .|.+++++|.|.|.+||.. ++..|
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 346753 8999999999999999963 45544
|
; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A. |
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.094 Score=32.62 Aligned_cols=29 Identities=38% Similarity=0.803 Sum_probs=20.5
Q ss_pred CcccCCCCCC--CCCceeCCCCceEeCCCCCe
Q psy17325 31 AECKHKFGLC--SNTCHPTPLGALCTCPPGEI 60 (461)
Q Consensus 31 ~~C~~~~~~C--~~~C~~~~~~~~C~C~~G~~ 60 (461)
++|... ..| ...|.+..++|.|.|++||.
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred ccCCCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 455431 235 34688888999999999985
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.71 Score=47.97 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=47.6
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCCC-------------------eEEEEeCCCC-------cEEE-Eec---------
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRLN-------------------RIEVCDENGT-------NRIV-LAK--------- 188 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~~-------------------~I~~~~~~G~-------~~~~-l~~--------- 188 (461)
.+.+.+||++++++.++.+|++-++.+ +|.+..+++. .-.. +..
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 457899999999999999999975544 8988887765 2222 222
Q ss_pred -------CCCCCceeEEEcCCCCceEEEEe-e
Q psy17325 189 -------DNITQPRGMMLDPSPGTRWLFWT-D 212 (461)
Q Consensus 189 -------~~~~~p~~ia~d~~~g~~~ly~t-d 212 (461)
..+..|..|++|+..+ ||+. |
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~---LwI~eD 454 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN---LWIQED 454 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC---EEEEeC
Confidence 2367899999999744 5554 5
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.38 E-value=7.2 Score=36.80 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=37.5
Q ss_pred CCCCceeE---EEecCCCeEEEEcCCCCeEEEEEec-CCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeC
Q psy17325 366 KIYWPNGL---TLDIATRRVYFADSKLDFIDFCNYD-GTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTE 441 (461)
Q Consensus 366 ~l~~p~gl---aiD~~~~~ly~~d~~~~~I~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~ 441 (461)
+-..|.++ .+ .+++.|++|...+- -.++.. ..+.. + .+... . ...+..+|...++++|++|-
T Consensus 253 et~~p~~~s~v~V--s~~~~Yvadga~gl-~~idisnp~spf--l-~ss~~-----t---~g~~a~gi~ay~~y~yiadk 318 (370)
T COG5276 253 ETSNPVSISTVPV--SGEYAYVADGAKGL-PIIDISNPPSPF--L-SSSLD-----T---AGYQAAGIRAYGNYNYIADK 318 (370)
T ss_pred ccCCcccccceec--ccceeeeeccccCc-eeEeccCCCCCc--h-hcccc-----C---CCccccceEEecCeeEeccC
Confidence 44445554 66 89999999875432 222220 01211 1 11110 0 11235689999999999998
Q ss_pred CCcee
Q psy17325 442 GAEFL 446 (461)
Q Consensus 442 ~~~~i 446 (461)
+++.+
T Consensus 319 n~g~v 323 (370)
T COG5276 319 NTGAV 323 (370)
T ss_pred CceEE
Confidence 87665
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=7.4 Score=36.72 Aligned_cols=221 Identities=10% Similarity=0.080 Sum_probs=109.4
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEec-C--CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAK-D--NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~--~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~ 235 (461)
.++-.|++|..++ ..+++.......+|.. . .-.....+++-. + +-|++.|.. .+..++..-....+++..
T Consensus 137 sGn~aYVadlddg-fLivdvsdpssP~lagrya~~~~d~~~v~ISG--n--~AYvA~~d~--GL~ivDVSnp~sPvli~~ 209 (370)
T COG5276 137 SGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPGGDTHDVAISG--N--YAYVAWRDG--GLTIVDVSNPHSPVLIGS 209 (370)
T ss_pred cCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCCCCceeEEEec--C--eEEEEEeCC--CeEEEEccCCCCCeEEEE
Confidence 4778999998544 3445544333333322 1 111224566642 3 788887654 344444443333334433
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
.-..|.--.+-...++.|.++...+ +...+.++...-.++..-.
T Consensus 210 ~n~g~g~~sv~vsdnr~y~vvy~eg-----------------------------------vlivd~s~~ssp~~~gsyet 254 (370)
T COG5276 210 YNTGPGTYSVSVSDNRAYLVVYDEG-----------------------------------VLIVDVSGPSSPTVFGSYET 254 (370)
T ss_pred EecCCceEEEEecCCeeEEEEcccc-----------------------------------eEEEecCCCCCceEeecccc
Confidence 2223333344445677787776653 4445556655444443222
Q ss_pred --eeeE-EEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 315 --YEAL-ALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 315 --p~~i-avd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
|.++ .+-..+.+.|+++... .-+.|--.+..+.....-..+.-.+..||.. .++.+|++|..++.
T Consensus 255 ~~p~~~s~v~Vs~~~~Yvadga~----------gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~ 322 (370)
T COG5276 255 SNPVSISTVPVSGEYAYVADGAK----------GLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGA 322 (370)
T ss_pred CCcccccceecccceeeeecccc----------CceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceE
Confidence 5554 1223367788876540 0122222222222222112234446778888 89999999988765
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
|.-+..- .--. ... +.... -..-++.+..+.+|.+|++.+..
T Consensus 323 vV~~s~~-s~m~---~~~---g~~ti------~~s~~v~~~~q~~y~~d~~~gl~ 364 (370)
T COG5276 323 VVDASPP-SMMD---KRP---GRPTI------GQSCDVSVDTQIIYSTDYNGGLS 364 (370)
T ss_pred EEeCCCh-hhcc---ccc---CcceE------eeecceEEEeeEEEEeecCCCEE
Confidence 5432220 0000 000 00000 01234555656999999988754
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.27 Score=37.48 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCCCceEEEEeCCe-eeeEEEeccCCeEEEeecC
Q psy17325 301 MDGSNASILVSGQL-YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 301 ~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~ 333 (461)
.+|+..+++...-. |+||+++|.++.||+++..
T Consensus 41 yd~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 41 YDGKEVKVVASGFSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred EeCCEeEEeeccCCCCceEEEcCCCCEEEEEecc
Confidence 45666666665433 9999999999999999887
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >smart00181 EGF Epidermal growth factor-like domain | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.082 Score=32.52 Aligned_cols=24 Identities=58% Similarity=1.161 Sum_probs=20.3
Q ss_pred CcccC-ceeeccCCccccCCCCeee
Q psy17325 78 GYCSQ-MCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 78 ~~C~~-~C~~~~g~~~C~C~~g~~l 101 (461)
..|.+ .|.+..++|.|.|++||..
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 45666 8999999999999999965
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.56 E-value=1.5 Score=42.79 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred CceeEEEecCCCeEEEEcCCC------CeEEEEEecCCCCeEEEEEcccccee------eccCCCCCcceEEEeeeCCEE
Q psy17325 369 WPNGLTLDIATRRVYFADSKL------DFIDFCNYDGTGRQQVILIDLMVEFT------NDLMGDNGVPALALDLENGML 436 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~------~~I~~~~~~g~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~l 436 (461)
.+-||++ ..++.+||++.+. .+|.+++. +|.....+.- ...+. .....-.+.+++++..++..|
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~--~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l 161 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDL--DGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTL 161 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECC--CCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEE
Confidence 4568999 5899999999999 99999999 5665433311 11110 112222356678888887778
Q ss_pred EEEeCCC
Q psy17325 437 YYSTEGA 443 (461)
Q Consensus 437 Ywtd~~~ 443 (461)
|..-+..
T Consensus 162 ~~~~E~~ 168 (326)
T PF13449_consen 162 FAAMESP 168 (326)
T ss_pred EEEECcc
Confidence 8876555
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=92.54 E-value=16 Score=38.73 Aligned_cols=196 Identities=14% Similarity=0.049 Sum_probs=111.8
Q ss_pred cCCeEEEEeCCCCeEEEEeC-CCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccc
Q psy17325 159 IGGHIYWLDSRLNRIEVCDE-NGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI 237 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~-~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~ 237 (461)
..++..++-+-+|++...|+ .....+++......+-.-+|+||.+- .++..+ .+.-.|+..++......-+++..-
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe--lV~AG~-~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE--LVCAGA-QDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC--EEEeec-cceEEEEEEEeecCeeeehhcCCC
Confidence 34555556666666666664 34555566555556777899999855 555444 455789988887544444444433
Q ss_pred ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC--ceEEEEeCCee
Q psy17325 238 YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS--NASILVSGQLY 315 (461)
Q Consensus 238 ~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~--~~~~l~~~~~p 315 (461)
+-..+|++++.+..|+=..... +|.+-+.=++ ..+++-.....
T Consensus 479 gPVs~l~f~~~~~~LaS~SWDk-----------------------------------TVRiW~if~s~~~vEtl~i~sdv 523 (893)
T KOG0291|consen 479 GPVSGLSFSPDGSLLASGSWDK-----------------------------------TVRIWDIFSSSGTVETLEIRSDV 523 (893)
T ss_pred CcceeeEEccccCeEEeccccc-----------------------------------eEEEEEeeccCceeeeEeeccce
Confidence 4456899999888777555443 2333222222 33443332236
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-------CeE-EEeeC---CCCCceeEEEecCCCeEEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS-------NRS-TIIST---KIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~-------~~~-~l~~~---~l~~p~glaiD~~~~~ly~ 384 (461)
-++++-|.++.|-++... +.+-||-- ...+++..+||. ... .+... .-+.-..|.+. .+|....
T Consensus 524 l~vsfrPdG~elaVaTld-gqItf~d~---~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS-aDG~~Il 598 (893)
T KOG0291|consen 524 LAVSFRPDGKELAVATLD-GQITFFDI---KEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS-ADGKCIL 598 (893)
T ss_pred eEEEEcCCCCeEEEEEec-ceEEEEEh---hhceeeccccchhhccccccccceeehhhcccCCceEEEEEc-CCCCEEE
Confidence 677888888888887765 45556543 223444444442 111 12211 22233456665 4566666
Q ss_pred EcCCCCeEEEEEe
Q psy17325 385 ADSKLDFIDFCNY 397 (461)
Q Consensus 385 ~d~~~~~I~~~~~ 397 (461)
+-...+.|-.++.
T Consensus 599 AgG~sn~iCiY~v 611 (893)
T KOG0291|consen 599 AGGESNSICIYDV 611 (893)
T ss_pred ecCCcccEEEEEC
Confidence 6666666766666
|
|
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.055 Score=32.82 Aligned_cols=18 Identities=50% Similarity=1.064 Sum_probs=15.2
Q ss_pred CceeCC-CCceEeCCCCCe
Q psy17325 43 TCHPTP-LGALCTCPPGEI 60 (461)
Q Consensus 43 ~C~~~~-~~~~C~C~~G~~ 60 (461)
.|+... ++|.|.|++||.
T Consensus 11 ~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 11 TCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp EEEEESTSEEEEEEBTTEE
T ss_pred EEEeCCCCCEEeECCCCCc
Confidence 688888 888999999985
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.78 Score=29.22 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=29.1
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEc
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLD 200 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d 200 (461)
.++.||+++...+.|.++++.......-+..+ ..|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 36789999999999999997544433223332 569998874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.11 Score=32.36 Aligned_cols=30 Identities=47% Similarity=1.049 Sum_probs=22.1
Q ss_pred CcceecCCcc--cCceeeccCCccccCCCCee
Q psy17325 71 MNECEQPGYC--SQMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 71 ~~eC~~~~~C--~~~C~~~~g~~~C~C~~g~~ 100 (461)
+++|.....| .+.|.+..++|.|.|+.||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4556432456 35799999999999999985
|
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. |
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=92.20 E-value=10 Score=35.46 Aligned_cols=194 Identities=10% Similarity=0.092 Sum_probs=118.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
...++++. ..++.+++-+.++.+...|+.+...+..+.+.-...-++|+.+.+. . .++- .....|...+.-|...
T Consensus 65 ~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~--q-ivSG-SrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 65 FVSDVVLS-SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR--Q-IVSG-SRDKTIKLWNTLGVCK 139 (315)
T ss_pred EecceEEc-cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc--e-eecC-CCcceeeeeeecccEE
Confidence 34556665 3567777778888999999988655555554445678999998866 4 4444 2336777777777666
Q ss_pred EEEEecc-cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 230 STIISTK-IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 230 ~~i~~~~-~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
-++.... -.+.+-+.+.|.+...|++...-+ +.+.+-++++-..+.
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D---------------------------------ktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWD---------------------------------KTVKVWNLRNCQLRT 186 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCC---------------------------------ceEEEEccCCcchhh
Confidence 6665554 568888999988777777766554 346666777665443
Q ss_pred EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 309 LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 309 l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
-+...- .+.+++.|++- |.-+ -|..+.++--+++-+....-. ....-.+.|++ .-++.+.+-
T Consensus 187 ~~~gh~~~v~t~~vSpDGs-lcas------------Ggkdg~~~LwdL~~~k~lysl-~a~~~v~sl~f--spnrywL~~ 250 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGS-LCAS------------GGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCF--SPNRYWLCA 250 (315)
T ss_pred ccccccccEEEEEECCCCC-EEec------------CCCCceEEEEEccCCceeEec-cCCCeEeeEEe--cCCceeEee
Confidence 332222 77888887543 4332 123556666666543332222 34445667777 334444443
Q ss_pred CCCCeEEEEEe
Q psy17325 387 SKLDFIDFCNY 397 (461)
Q Consensus 387 ~~~~~I~~~~~ 397 (461)
+....|...++
T Consensus 251 at~~sIkIwdl 261 (315)
T KOG0279|consen 251 ATATSIKIWDL 261 (315)
T ss_pred ccCCceEEEec
Confidence 44445666666
|
|
| >COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.96 E-value=8.6 Score=35.49 Aligned_cols=91 Identities=16% Similarity=0.294 Sum_probs=52.6
Q ss_pred eCCCCeEEEEeCCCCc--EEEE------ecCCCCCceeEEE--cCCCCceEEEEeecCCCCcEEEEec----CCCCcEEE
Q psy17325 167 DSRLNRIEVCDENGTN--RIVL------AKDNITQPRGMML--DPSPGTRWLFWTDWGENPRIERIGM----DGSNRSTI 232 (461)
Q Consensus 167 d~~~~~I~~~~~~G~~--~~~l------~~~~~~~p~~ia~--d~~~g~~~ly~td~~~~~~I~~~~~----dG~~~~~i 232 (461)
|...+.|.....++.. .+.+ ...++..|.|+++ ++.+|.=++|+++ ...-|....+ +|..+..+
T Consensus 120 dR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~--~qG~~~Qy~l~d~gnGkv~~k~ 197 (364)
T COG4247 120 DRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR--RQGDIAQYKLIDQGNGKVGTKL 197 (364)
T ss_pred cccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec--CCCceeEEEEEecCCceEccee
Confidence 3345556555544433 2222 2345678999999 5565644566665 2245555554 23333333
Q ss_pred Eec-c-cccceeEEeeccCCeeEEecCCC
Q psy17325 233 IST-K-IYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 233 ~~~-~-~~~P~glavD~~~~~ly~~d~~~ 259 (461)
+.. . -.+-.|+..|-..+.||+++..-
T Consensus 198 vR~fk~~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 198 VRQFKIPTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred eEeeecCCcccceeeccccceEEEeeccc
Confidence 332 1 12457999999999999998764
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=91.86 E-value=20 Score=38.16 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=77.2
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
+.....+++.+ .+.+..|-..+++|.+.+.....+.+-..+.-....++.+... ...+..++|||+
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-------------g~~llssSLDGt 415 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-------------GNVLLSSSLDGT 415 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEec-------------CCEEEEeecCCe
Confidence 34455677764 4556677788888888888777766665543333333333332 235566667776
Q ss_pred Cc----------EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 228 NR----------STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 228 ~~----------~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
.| +++....-.+-.-+|+|+.+..+...+... -.|+
T Consensus 416 VRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~----------------------------------F~If 461 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS----------------------------------FEIF 461 (893)
T ss_pred EEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce----------------------------------EEEE
Confidence 54 333333333556799998655554444333 2466
Q ss_pred EEeCCCCceEEEEeCCe--eeeEEEeccCCeEE
Q psy17325 298 KANMDGSNASILVSGQL--YEALALDLENGMLY 328 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY 328 (461)
+..+..+...-++.+.. ..+|+++|.+..|+
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEccccCeEE
Confidence 65554333333333333 78899999877665
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.81 E-value=16 Score=37.02 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=68.2
Q ss_pred eEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCe
Q psy17325 172 RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 251 (461)
Q Consensus 172 ~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ 251 (461)
+|.+.+++...+..++... ..-...++-|... ..+|..+-..+..|+.++++|+....+... ...-..=.+-+.+++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~-~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ 295 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGS-KLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSK 295 (425)
T ss_pred eEEEEeccCCccceeeccC-CccCCccCCCCCC-EEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCE
Confidence 5777777766666665522 1222334555533 234444434458999999999886554322 111112234555677
Q ss_pred eEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEe
Q psy17325 252 VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYS 330 (461)
Q Consensus 252 ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t 330 (461)
|+++....++ ..|++.+++|...+.+..... ...-.+.|.+++|-+.
T Consensus 296 ivf~Sdr~G~--------------------------------p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 296 IVFTSDRGGR--------------------------------PQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred EEEEeCCCCC--------------------------------cceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEE
Confidence 7766444432 468999999988755544332 2233445555554443
|
|
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.2 Score=30.56 Aligned_cols=20 Identities=45% Similarity=0.838 Sum_probs=16.2
Q ss_pred CCceeCCCCceEeCCCCCee
Q psy17325 42 NTCHPTPLGALCTCPPGEIL 61 (461)
Q Consensus 42 ~~C~~~~~~~~C~C~~G~~l 61 (461)
..|.+.++++.|.|+.||..
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CEEecCCCCeEeECCCCCcc
Confidence 46888888899999999863
|
|
| >PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.14 Score=44.36 Aligned_cols=64 Identities=28% Similarity=0.685 Sum_probs=43.7
Q ss_pred ceeCCCCceEeCCCCCeecCCCCceecCcceec----CCcccC--ceeecc-----CCccccCCCCeeeeCCCCceee
Q psy17325 44 CHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ----PGYCSQ--MCTNTK-----GSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 44 C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~----~~~C~~--~C~~~~-----g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
...+.+.|.|.|.+||.+. ...+|+...+|.. ...|.. .|.+.+ ..|.|.|.+||.+..+ .|++
T Consensus 13 LiQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCvp 87 (197)
T PF06247_consen 13 LIQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCVP 87 (197)
T ss_dssp EEEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEEE
T ss_pred EEEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEch
Confidence 5667888999999999885 4679999999963 235754 787665 5789999999998743 4643
|
Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=91.02 E-value=22 Score=37.17 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=28.4
Q ss_pred eeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEe
Q psy17325 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 154 iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~t 211 (461)
+++|...+.|||--.+-.- ..+..+ ...++..-.=+|||..+| .+-|.
T Consensus 239 ~s~D~~~~lvy~~tGnp~p-----~~~~~r---~gdnl~~~s~vAld~~TG--~~~W~ 286 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSP-----WNSHLR---PGDNLYTSSIVARDPDTG--KIKWH 286 (527)
T ss_pred eeEcCCCCeEEEeCCCCCC-----CCCCCC---CCCCccceeEEEEccccC--CEEEe
Confidence 5888888888886543111 122221 112233345589999999 88776
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1217|consensus | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.8 Score=46.86 Aligned_cols=60 Identities=35% Similarity=0.728 Sum_probs=38.7
Q ss_pred CCceeCCCCceEeCCCCCeecCCCCceecCcceecCCccc--CceeeccCCccccCCCCeeee
Q psy17325 42 NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCS--QMCTNTKGSYICSCNEGYVLE 102 (461)
Q Consensus 42 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~l~ 102 (461)
..|.+..+++.|.|++||..... ..|.++++|.....|. ..|.+..+.|.|.|++||...
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~ 304 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGR 304 (487)
T ss_pred CcccccCCceeeeCCCCcccccc-ceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCC
Confidence 34666666677777777754221 3566777776432254 378888777888888888644
|
|
| >PF12999 PRKCSH-like: Glucosidase II beta subunit-like | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.13 Score=44.67 Aligned_cols=20 Identities=35% Similarity=0.851 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy17325 6 VNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 6 i~~~~~Cd~~~dC~dg~de~ 25 (461)
|+.+.+.|++.||+|||||.
T Consensus 48 I~~~~iNDdyCDC~DGSDEP 67 (176)
T PF12999_consen 48 IPFSQINDDYCDCPDGSDEP 67 (176)
T ss_pred ecHHHccCcceeCCCCCCcc
Confidence 67788899999999999994
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=29 Score=36.90 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=95.6
Q ss_pred ceeeeeeeecCCeEEEEe-------CCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------
Q psy17325 150 LVEGLAYDWIGGHIYWLD-------SRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-------- 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d-------~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-------- 214 (461)
.+...++.+.++.+.++. ....+|.+.+..|..+...-...+..| .++|..+ .|++..-+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~P---sWspDG~--~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRP---SWSLDAD--AVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCc---eECCCCC--ceEEEecCcceEEEec
Confidence 456677777777766655 223478888876665443322233344 5777644 55554212
Q ss_pred --CCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCc
Q psy17325 215 --ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGV 292 (461)
Q Consensus 215 --~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~ 292 (461)
....|+...+++..... .--..+..|++.+.+.+|.+.-. ++++.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~--g~v~V---------------------------- 472 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG--GKVYL---------------------------- 472 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC--CEEEE----------------------------
Confidence 22455555555543322 11124778888888888877553 22221
Q ss_pred ceeeeEEeCCCCceEEE----EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCC
Q psy17325 293 PLKIGKANMDGSNASIL----VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI 367 (461)
Q Consensus 293 ~~~I~~~~~~g~~~~~l----~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l 367 (461)
..|.+ .-+|. .++. +...+ .....++ |.... . |+....+....++++.+||...+.+...++
T Consensus 473 -a~Vvr-~~~G~-~~l~~~~~l~~~l~~~~~~l~-------W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~ 539 (591)
T PRK13616 473 -AVVEQ-TEDGQ-YALTNPREVGPGLGDTAVSLD-------WRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNL 539 (591)
T ss_pred -EEEEe-CCCCc-eeecccEEeecccCCccccce-------EecCC--E-EEEEecCCCCceEEEecCCccccccCCCCc
Confidence 11222 22333 2220 11111 0112233 33322 1 222222345669999999998776443444
Q ss_pred CCceeEEEecCCCeEEEEcCCC
Q psy17325 368 YWPNGLTLDIATRRVYFADSKL 389 (461)
Q Consensus 368 ~~p~glaiD~~~~~ly~~d~~~ 389 (461)
..| ..+|....+.||++|...
T Consensus 540 ~~~-v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 540 SAP-VVAVAASPSTVYVTDARA 560 (591)
T ss_pred cCc-eEEEecCCceEEEEcCCc
Confidence 433 355544557899998754
|
|
| >KOG1217|consensus | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.1 Score=45.69 Aligned_cols=102 Identities=37% Similarity=0.688 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCCCCC--CcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCC-----CceecC-----------
Q psy17325 12 CDGKTDCPNGADEGPGCDL--AECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDS-----VTCQDM----------- 71 (461)
Q Consensus 12 Cd~~~dC~dg~de~~~C~~--~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~-----~~C~d~----------- 71 (461)
+.-...|..|+.. ..|.. ++|......|.+ .|.+..++|.|.|++||...... ..|.+.
T Consensus 150 ~~~~c~C~~g~~~-~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~ 228 (487)
T KOG1217|consen 150 GPFRCSCTEGYEG-EPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARG 228 (487)
T ss_pred CceeeeeCCCccc-ccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCC
Confidence 3444567777654 34432 578755655654 69999999999999999754322 234332
Q ss_pred ccee-cCCccc---CceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 72 NECE-QPGYCS---QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 72 ~eC~-~~~~C~---~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
..|. ....|. ..|.+..+++.|.|++||....- ..|.+++++.
T Consensus 229 ~~c~~~~~~~~~~~~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~ 275 (487)
T KOG1217|consen 229 PECEVSIVECASGDGTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCA 275 (487)
T ss_pred CCcccccccccCCCCcccccCCceeeeCCCCcccccc-ceeeeccccC
Confidence 2222 111232 67888999999999999976531 2344444443
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=88.80 E-value=30 Score=35.30 Aligned_cols=209 Identities=10% Similarity=0.105 Sum_probs=106.2
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCCcEEEEecccccceeEEeecc
Q psy17325 170 LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIA 248 (461)
Q Consensus 170 ~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~~~~i~~~~~~~P~glavD~~ 248 (461)
.+.|...+++-.....++.+......+|++.+.+. +||-.+ ....|..-+.. |..-+......-....+|+...
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~Sgs--yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~- 373 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGS--YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE- 373 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeec--cCceEEEEecCCccccccccccccceEEEEeecC-
Confidence 45555555443334444555556788899998866 888665 23455554443 3332222222334567777763
Q ss_pred CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC--CCceEEEEeCCe-eeeEEEeccCC
Q psy17325 249 TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD--GSNASILVSGQL-YEALALDLENG 325 (461)
Q Consensus 249 ~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~--g~~~~~l~~~~~-p~~iavd~~~~ 325 (461)
.+.||-.-.. + ++.+..+. |-....++..+. |.++|+.+.++
T Consensus 374 ~~~~~t~g~D-d----------------------------------~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~ 418 (603)
T KOG0318|consen 374 SGELFTIGWD-D----------------------------------TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG 418 (603)
T ss_pred CCcEEEEecC-C----------------------------------eEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence 3555533222 1 23444332 222233333344 99999998777
Q ss_pred eEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 326 MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 326 ~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
.+.++-.. .|.-.. +......+ .-...|.++|+.+....+-+- ...++|....+.|+.....
T Consensus 419 ~avv~~~~--------------~iv~l~--~~~~~~~~-~~~y~~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 419 TAVVACIS--------------DIVLLQ--DQTKVSSI-PIGYESSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred EEEEEecC--------------cEEEEe--cCCcceee-ccccccceEEEcCCCCEEEEe-cccceEEEEEecCCcccce
Confidence 66665433 121111 00011111 233468999998665555554 4456788888844332222
Q ss_pred -EEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 406 -ILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 406 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+..+...... .++.++++.+|-.+|....++
T Consensus 481 ~~~~~h~a~iT----------~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 481 AKLLEHRAAIT----------DVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred eeeecccCCce----------EEEECCCCcEEEEeccCCcEE
Confidence 2222111111 344555566676677666655
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=88.29 E-value=21 Score=39.12 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEE-ecCCCCCceeEEEcCCCCceEEEE-eecCC---CCcEEEEecC--CCCcEEE
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVL-AKDNITQPRGMMLDPSPGTRWLFW-TDWGE---NPRIERIGMD--GSNRSTI 232 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l-~~~~~~~p~~ia~d~~~g~~~ly~-td~~~---~~~I~~~~~d--G~~~~~i 232 (461)
++-+|+.+. .++|.++|.+|...+++ +.... ....-++-|... +|-+ +.+.. .+.|++-+|+ |+....|
T Consensus 319 tkiAfv~~~-~~~L~~~D~dG~n~~~ve~~~~~-~i~sP~~SPDG~--~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl 394 (912)
T TIGR02171 319 AKLAFRNDV-TGNLAYIDYTKGASRAVEIEDTI-SVYHPDISPDGK--KVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL 394 (912)
T ss_pred eeEEEEEcC-CCeEEEEecCCCCceEEEecCCC-ceecCcCCCCCC--EEEEEEeecCCCCCceEEEEehhccCCCceEe
Confidence 566788774 35999999999887776 44321 112234556544 5444 54333 5779988887 4444444
Q ss_pred EecccccceeEEee-ccCCeeEEecCCCce
Q psy17325 233 ISTKIYWPNGLTLD-IATRRVYFADSKLDF 261 (461)
Q Consensus 233 ~~~~~~~P~glavD-~~~~~ly~~d~~~~~ 261 (461)
-.++..-|.==.+. -.+--+|++|..++.
T Consensus 395 ~ve~aaiprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 395 PVENAAIPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred ecccccccceEecCCCCeEEEEEcCCCCCc
Confidence 44444445433332 112346888877643
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.35 Score=29.37 Aligned_cols=20 Identities=50% Similarity=1.006 Sum_probs=17.2
Q ss_pred CceeeccCCccccCCCCeee
Q psy17325 82 QMCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 82 ~~C~~~~g~~~C~C~~g~~l 101 (461)
..|.+..++|.|.|+.||..
T Consensus 12 ~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 12 GTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CEEecCCCCeEeECCCCCcc
Confidence 57888889999999999853
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.41 E-value=21 Score=32.05 Aligned_cols=110 Identities=18% Similarity=0.056 Sum_probs=57.6
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEE--EeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER--IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~--~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
.||+-| +.+|.-+|.. .+|+|-|-..-..+.+ +..+|.-.. .-+-|.. .+|.||--=+.+.+|.
T Consensus 134 WgLt~d--~~~LimsdGs--atL~frdP~tfa~~~~v~VT~~g~pv~--------~LNELE~--VdG~lyANVw~t~~I~ 199 (262)
T COG3823 134 WGLTSD--DKNLIMSDGS--ATLQFRDPKTFAELDTVQVTDDGVPVS--------KLNELEW--VDGELYANVWQTTRIA 199 (262)
T ss_pred eeeecC--CcceEeeCCc--eEEEecCHHHhhhcceEEEEECCeecc--------cccceee--eccEEEEeeeeecceE
Confidence 345444 5556555543 5677765442222222 223443222 2233443 6788887778889999
Q ss_pred EEEecCCCCeEEEEEccccceeeccCCC--CCcceEEEeeeCCEEEEEe
Q psy17325 394 FCNYDGTGRQQVILIDLMVEFTNDLMGD--NGVPALALDLENGMLYYST 440 (461)
Q Consensus 394 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~lYwtd 440 (461)
|++.+ +|+....+.-+.-.......+. +...++|-....+++|+|-
T Consensus 200 rI~p~-sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPD-SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCC-CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 99995 7776544432111111111122 2334555555677999984
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.77 E-value=47 Score=35.32 Aligned_cols=200 Identities=11% Similarity=0.045 Sum_probs=100.2
Q ss_pred CCceeEEEcCCCCceEEEEeec------CCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeec
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDW------GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~------~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~ 265 (461)
..+...++.|... .+.++.. .....|+.+...|..+. +.... .-..-.+++.++.|+++......
T Consensus 350 ~~vsspaiSpdG~--~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~-lt~g~--~~t~PsWspDG~~lw~v~dg~~~---- 420 (591)
T PRK13616 350 GNITSAALSRSGR--QVAAVVTLGRGAPDPASSLWVGPLGGVAVQ-VLEGH--SLTRPSWSLDADAVWVVVDGNTV---- 420 (591)
T ss_pred cCcccceECCCCC--EEEEEEeecCCCCCcceEEEEEeCCCccee-eecCC--CCCCceECCCCCceEEEecCcce----
Confidence 4577888988754 5444431 12357888887665533 33221 12334467766777776433211
Q ss_pred ccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCC
Q psy17325 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGE 345 (461)
Q Consensus 266 ~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~ 345 (461)
.|-.+.... +.|++..+++...+. .....+..+.+.|.+.+|.+.-.
T Consensus 421 ----------------~~v~~~~~~---gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~------------- 467 (591)
T PRK13616 421 ----------------VRVIRDPAT---GQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG------------- 467 (591)
T ss_pred ----------------EEEeccCCC---ceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC-------------
Confidence 111111111 356666666654332 11111677777777777665432
Q ss_pred CCceEEE---eecCCCeEE-----EeeCCCCC-ceeEEEecCCCeEEEEcCC-CCeEEEEEecCCCCeEEEEEcccccee
Q psy17325 346 NPRIERI---GMDGSNRST-----IISTKIYW-PNGLTLDIATRRVYFADSK-LDFIDFCNYDGTGRQQVILIDLMVEFT 415 (461)
Q Consensus 346 ~~~I~~~---~~dG~~~~~-----l~~~~l~~-p~glaiD~~~~~ly~~d~~-~~~I~~~~~~g~g~~~~~~~~~~~~~~ 415 (461)
++|+.+ ..++...+. +. ..+.. +..++.- .++.|++.-.. ...++++.+| |.....+.. ..+.
T Consensus 468 -g~v~Va~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vD--G~~~~~~~~--~n~~ 540 (591)
T PRK13616 468 -GKVYLAVVEQTEDGQYALTNPREVG-PGLGDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLD--GSNSDALPS--RNLS 540 (591)
T ss_pred -CEEEEEEEEeCCCCceeecccEEee-cccCCccccceEe-cCCEEEEEecCCCCceEEEecC--CccccccCC--CCcc
Confidence 244442 222222222 22 34443 4555553 45567765333 3458888994 554332111 1111
Q ss_pred eccCCCCCcceEEEeeeCCEEEEEeCCCceeecc
Q psy17325 416 NDLMGDNGVPALALDLENGMLYYSTEGAEFLKTP 449 (461)
Q Consensus 416 ~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~~ 449 (461)
.+..+|+-..+.||++|... .++.+
T Consensus 541 --------~~v~~vaa~~~~iyv~~~~g-~~~l~ 565 (591)
T PRK13616 541 --------APVVAVAASPSTVYVTDARA-VLQLP 565 (591)
T ss_pred --------CceEEEecCCceEEEEcCCc-eEEec
Confidence 22456777777899997544 44444
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.74 E-value=34 Score=33.66 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=46.1
Q ss_pred eeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc-eeEEEecCCCeEEEEcC----CCCeEEEEEecCC-CCeEEEE
Q psy17325 336 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP-NGLTLDIATRRVYFADS----KLDFIDFCNYDGT-GRQQVIL 407 (461)
Q Consensus 336 ~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p-~glaiD~~~~~ly~~d~----~~~~I~~~~~~g~-g~~~~~~ 407 (461)
.+++.++...-.+|+..+.+|...+.|. .+--.. .-+.+|..++.||++-. ....++++++ + +...+.+
T Consensus 249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~--~~~~~~~~L 323 (353)
T PF00930_consen 249 EFLWISERDGYRHLYLYDLDGGKPRQLT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL--DSGGEPKCL 323 (353)
T ss_dssp EEEEEEETTSSEEEEEEETTSSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET--TETTEEEES
T ss_pred EEEEEEEcCCCcEEEEEcccccceeccc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe--CCCCCeEec
Confidence 4555666434568999999998866544 222223 34788989999999844 4568999999 5 5554433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet | Back alignment and domain information |
|---|
Probab=86.35 E-value=0.85 Score=27.66 Aligned_cols=23 Identities=39% Similarity=1.011 Sum_probs=14.1
Q ss_pred CCCCceeCCCCceEeCCCCCeecC
Q psy17325 40 CSNTCHPTPLGALCTCPPGEILSN 63 (461)
Q Consensus 40 C~~~C~~~~~~~~C~C~~G~~l~~ 63 (461)
|...|..... ..|.||.||.+..
T Consensus 8 CpA~CDpn~~-~~C~CPeGyIlde 30 (34)
T PF09064_consen 8 CPADCDPNSP-GQCFCPEGYILDE 30 (34)
T ss_pred CCCccCCCCC-CceeCCCceEecC
Confidence 4444543222 4799999998744
|
Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=86.15 E-value=50 Score=35.00 Aligned_cols=192 Identities=10% Similarity=0.063 Sum_probs=107.1
Q ss_pred eEEEcCCCCceEEEEeecCCC------CcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce
Q psy17325 196 GMMLDPSPGTRWLFWTDWGEN------PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269 (461)
Q Consensus 196 ~ia~d~~~g~~~ly~td~~~~------~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~ 269 (461)
++++- +| +||++- |.+ ..+++.+........+..-.. .=.++++-..++.||..-...+.-.
T Consensus 327 ~~~~~--~~--~lYv~G-G~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-~R~~~~v~~l~g~iYavGG~dg~~~------ 394 (571)
T KOG4441|consen 327 GVAVL--NG--KLYVVG-GYDSGSDRLSSVERYDPRTNQWTPVAPMNT-KRSDFGVAVLDGKLYAVGGFDGEKS------ 394 (571)
T ss_pred cEEEE--CC--EEEEEc-cccCCCcccceEEEecCCCCceeccCCccC-ccccceeEEECCEEEEEeccccccc------
Confidence 44443 45 899885 333 455666665544433221111 1123444556788887765442211
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecC-CCC
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENP 347 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~ 347 (461)
...|++.++....-+.+..... -.+.++-..+|+||..-.. .... .-.
T Consensus 395 -----------------------l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~-------~~~~~~l~ 444 (571)
T KOG4441|consen 395 -----------------------LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG-------DGSSNCLN 444 (571)
T ss_pred -----------------------cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc-------CCCccccc
Confidence 1357888777776665554333 3455666679999987442 0000 124
Q ss_pred ceEEEeecCCCeEEEee-CCCCCceeEEEecCCCeEEEEcCC-----CCeEEEEEecCCCCeEEEEEccccceeeccCCC
Q psy17325 348 RIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSK-----LDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~d~~-----~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 421 (461)
.+++.+.....-+.+.. ..-..-.|+++ .+++||++-.. ...|++.++ .......+........
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp--~~~~W~~v~~m~~~rs------ 514 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDP--ETNQWTMVAPMTSPRS------ 514 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcC--CCCceeEcccCccccc------
Confidence 67777776655554431 11222345666 89999998432 345888888 4544444432222222
Q ss_pred CCcceEEEeeeCCEEEEEeCCC
Q psy17325 422 NGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 422 ~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
..++++.++.||+.-.-.
T Consensus 515 ----~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 515 ----AVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred ----cccEEEECCEEEEEeccc
Confidence 567889999999986544
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.72 E-value=3.1 Score=26.32 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=24.3
Q ss_pred ccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEe
Q psy17325 322 LENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLD 376 (461)
Q Consensus 322 ~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD 376 (461)
|.+++||+++.. .+.|...+........-+ .-...|.+|+++
T Consensus 1 pd~~~lyv~~~~------------~~~v~~id~~~~~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG------------SNTVSVIDTATNKVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC------------CCEEEEEECCCCeEEEEE-ECCCCCceEEeC
Confidence 346677777665 667776665332222222 224678888873
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins | Back alignment and domain information |
|---|
Probab=85.38 E-value=0.47 Score=28.69 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=17.8
Q ss_pred cccC--ceeecc-CCccccCCCCee
Q psy17325 79 YCSQ--MCTNTK-GSYICSCNEGYV 100 (461)
Q Consensus 79 ~C~~--~C~~~~-g~~~C~C~~g~~ 100 (461)
.|.+ .|.+.. ++|.|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 4543 788888 999999999985
|
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.90 E-value=42 Score=33.02 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=47.3
Q ss_pred eeeeEEeCCCCceEEEEeCCe-e-eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeCCCCCc
Q psy17325 294 LKIGKANMDGSNASILVSGQL-Y-EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWP 370 (461)
Q Consensus 294 ~~I~~~~~~g~~~~~l~~~~~-p-~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~~l~~p 370 (461)
..|+..+.+|...+.|..+.. . .-+.+|+.++.||++-.. +......|++++++ |...+-|. .....-
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~--------~~p~~r~lY~v~~~~~~~~~~LT-~~~~~~ 330 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG--------DNPGERHLYRVSLDSGGEPKCLT-CEDGDH 330 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS--------GGTTSBEEEEEETTETTEEEESS-TTSSTT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC--------CCCCceEEEEEEeCCCCCeEecc-CCCCCc
Confidence 467778888777554444433 3 457899999999987654 11234579999999 66655544 322222
Q ss_pred eeEEEecCCC
Q psy17325 371 NGLTLDIATR 380 (461)
Q Consensus 371 ~glaiD~~~~ 380 (461)
..+++.+..+
T Consensus 331 ~~~~~Spdg~ 340 (353)
T PF00930_consen 331 YSASFSPDGK 340 (353)
T ss_dssp EEEEE-TTSS
T ss_pred eEEEECCCCC
Confidence 4667764433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=46 Score=33.23 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
.+++||+.+. .+.|..++.+ +|...-.......+.. ....+.+++||+.+.....+
T Consensus 334 ~~g~l~v~~~-~G~l~~ld~~-tG~~~~~~~~~~~~~~-----------s~P~~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 334 YNGYLVVGDS-EGYLHWINRE-DGRFVAQQKVDSSGFL-----------SEPVVADDKLLIQARDGTVY 389 (394)
T ss_pred ECCEEEEEeC-CCEEEEEECC-CCCEEEEEEcCCCcce-----------eCCEEECCEEEEEeCCceEE
Confidence 5789999865 4688888884 6654322211111111 12234688999997655443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.63 E-value=56 Score=32.77 Aligned_cols=197 Identities=10% Similarity=0.071 Sum_probs=94.4
Q ss_pred eeeeeecCCeEEEE-eC-CC--CeEEEEeCCCCcE-EEEecCCCCCceeEEEcCCCCceEEEEeecCC---------CCc
Q psy17325 153 GLAYDWIGGHIYWL-DS-RL--NRIEVCDENGTNR-IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE---------NPR 218 (461)
Q Consensus 153 ~iavd~~~~~ly~~-d~-~~--~~I~~~~~~G~~~-~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~---------~~~ 218 (461)
+.++.+.++.+-++ +. ++ -.|.+.++..... ...+.. ....+++.-+... .+|++.+.. ..+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSS--EEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCC--EEEEEEeCcccccccCCCCcE
Confidence 34454555554443 22 22 2477778755422 211111 1233477776644 788887544 345
Q ss_pred EEEEecCCCCcE--EEEeccccc---ceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcc
Q psy17325 219 IERIGMDGSNRS--TIISTKIYW---PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293 (461)
Q Consensus 219 I~~~~~dG~~~~--~i~~~~~~~---P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~ 293 (461)
|++..+...... .|... -.. -.++.+...++.|++.-..... .
T Consensus 204 v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~------------------------------ 251 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTS-E------------------------------ 251 (414)
T ss_dssp EEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSS-E------------------------------
T ss_pred EEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcccc-C------------------------------
Confidence 777777644332 34332 222 3366666666666654333211 0
Q ss_pred eeeeEEeCCCC-----ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCe---E-EEe
Q psy17325 294 LKIGKANMDGS-----NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNR---S-TII 363 (461)
Q Consensus 294 ~~I~~~~~~g~-----~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~---~-~l~ 363 (461)
..++..+++.. ..+.+........-.++..++.+|+ .|+.+ .+.+|.+++++.... . +++
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi----------~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~ 321 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI----------LTNDDAPNGRLVAVDLADPSPAEWWTVLI 321 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE----------EE-TT-TT-EEEEEETTSTSGGGEEEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE----------eeCCCCCCcEEEEecccccccccceeEEc
Confidence 23555555543 2233332111111112222444443 34443 567899999876652 3 454
Q ss_pred eCC-CCCceeEEEecCCCeEEEEcC--CCCeEEEEEe
Q psy17325 364 STK-IYWPNGLTLDIATRRVYFADS--KLDFIDFCNY 397 (461)
Q Consensus 364 ~~~-l~~p~glaiD~~~~~ly~~d~--~~~~I~~~~~ 397 (461)
... -..-.++.+ .+++|++... ...+|..+++
T Consensus 322 ~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 322 PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp --SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 222 124556666 6788887643 3457888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=82.18 E-value=58 Score=32.66 Aligned_cols=194 Identities=13% Similarity=0.135 Sum_probs=97.6
Q ss_pred cceeeeeeeecCC-eEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGG-HIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~-~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.....+++-+... ++..+-...|+|...++++.. ...+.- ..|.+. |.. .|++.. ....+|+..++|
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~---f~~hs~---~Vs---~l~F~P-~n~s~i~ssSyD 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL---FTPHSG---PVS---GLKFSP-ANTSQIYSSSYD 256 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE---eccCCc---ccc---ceEecC-CChhheeeeccC
Confidence 4566778877655 677777778999999987322 221111 111111 112 255554 233577777777
Q ss_pred CCCcEEEEe---------c--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 226 GSNRSTIIS---------T--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 226 G~~~~~i~~---------~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
|+-|-.=+. . .-.+-.++.+...++.+|+.+... . .
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~--------------------------------f 303 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-N--------------------------------F 303 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-c--------------------------------e
Confidence 765522111 1 122344555555566666665543 1 1
Q ss_pred eeeEEeCCCCceEEEE-eCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEe-ecCCCeEEEee--CCCCCc
Q psy17325 295 KIGKANMDGSNASILV-SGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG-MDGSNRSTIIS--TKIYWP 370 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~-~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~-~dG~~~~~l~~--~~l~~p 370 (461)
.+.-...+|+..+.+. ......+|++.|....+.-|-+. ....+|+-+. |.++-. .++. ..-...
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~----------D~T~kIWD~R~l~~K~s-p~lst~~HrrsV 372 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL----------DQTAKIWDLRQLRGKAS-PFLSTLPHRRSV 372 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc----------CcceeeeehhhhcCCCC-cceeccccccee
Confidence 1222344455332222 11127888888887765554332 1234555553 444332 1221 122234
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+...+.+.++.|. +....+.|..++.
T Consensus 373 ~sAyFSPs~gtl~-TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 373 NSAYFSPSGGTLL-TTCQDNEIRVFDS 398 (498)
T ss_pred eeeEEcCCCCceE-eeccCCceEEeec
Confidence 5566677777744 4444566666655
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=81.53 E-value=4.7 Score=40.34 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=36.5
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccc-cce-----eeccCC---CCCcceEEEeeeCCEEEEE
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM-VEF-----TNDLMG---DNGVPALALDLENGMLYYS 439 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~-~~~-----~~~~~~---~~~~~~~~l~~~~~~lYwt 439 (461)
-+..|.|..++..||++.+..+.|+..|+. +-.+.+.+.... .+. ...+.| .+.++-+.|+.++.+||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDIS-DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDIS-DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-S-STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecC-CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 467788888999999999999999999993 333433332211 000 000000 0134557789999999999
Q ss_pred eC
Q psy17325 440 TE 441 (461)
Q Consensus 440 d~ 441 (461)
++
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 75
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=81.48 E-value=50 Score=31.40 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=100.5
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEe-CCCCcEEEEecCCCCCceeEE-EcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCD-ENGTNRIVLAKDNITQPRGMM-LDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~-~~G~~~~~l~~~~~~~p~~ia-~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
..+..|.++. +|....+-+.++.|+..+ ++|+...++-.... -+.-+. .+..+- .|+=+. ..+..|.-.++.-
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skky-G~~~~~Fth~~~~--~i~sSt-k~d~tIryLsl~d 89 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-GVDLACFTHHSNT--VIHSST-KEDDTIRYLSLHD 89 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccc-cccEEEEecCCce--EEEccC-CCCCceEEEEeec
Confidence 3567777775 444555566677888888 56666666544321 111111 122222 333222 2335666666554
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
..........-...+.|.+-|.+ ..|.+-+... +|..-++.-...
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~----------------------------------tvrLWDlR~~~c 134 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDK----------------------------------TVRLWDLRVKKC 134 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCC-CeEEecccCC----------------------------------eEEeeEecCCCC
Confidence 33323333334457788888765 5565555442 355555555555
Q ss_pred EEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee---cCCCeEEE-ee-CCCCCceeEEEecCCCe
Q psy17325 307 SILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM---DGSNRSTI-IS-TKIYWPNGLTLDIATRR 381 (461)
Q Consensus 307 ~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~---dG~~~~~l-~~-~~l~~p~glaiD~~~~~ 381 (461)
..++....+.-.|+|| +|.++-+-.+ +..|.-.++ |..-.+++ +. .....=++|.+.+.++.
T Consensus 135 qg~l~~~~~pi~AfDp-~GLifA~~~~------------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~ 201 (311)
T KOG1446|consen 135 QGLLNLSGRPIAAFDP-EGLIFALANG------------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS 201 (311)
T ss_pred ceEEecCCCcceeECC-CCcEEEEecC------------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence 6665544466678897 4544433222 225555543 22222222 21 23444566777655555
Q ss_pred EEEEcCCCCeEEEEEecCCCCe
Q psy17325 382 VYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
|.++. ..+.|..++. -+|..
T Consensus 202 iLlsT-~~s~~~~lDA-f~G~~ 221 (311)
T KOG1446|consen 202 ILLST-NASFIYLLDA-FDGTV 221 (311)
T ss_pred EEEEe-CCCcEEEEEc-cCCcE
Confidence 55553 3345555554 24553
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=81.46 E-value=89 Score=34.31 Aligned_cols=96 Identities=7% Similarity=0.117 Sum_probs=65.2
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
+.|+++.+ ++-||++-..+-.|.+.+........-+.+.++-.|.+.+++..- +|.=+ .+...|..-++...+-.
T Consensus 54 VRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP--WIlSA--SDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 54 VRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP--WILSA--SDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred cceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc--eEEEc--cCCCeEEEEeccCCceE
Confidence 46777764 778999888888999999887665544556777889999998755 44422 34567877777765554
Q ss_pred EEEecccccceeEEeeccCCe
Q psy17325 231 TIISTKIYWPNGLTLDIATRR 251 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ 251 (461)
.++...-.....-.+.+.++.
T Consensus 129 avltGHnHYVMcAqFhptEDl 149 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTEDL 149 (1202)
T ss_pred EEEecCceEEEeeccCCccce
Confidence 455544445566666664443
|
|
| >PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A | Back alignment and domain information |
|---|
Probab=81.25 E-value=0.76 Score=21.65 Aligned_cols=9 Identities=56% Similarity=1.427 Sum_probs=5.3
Q ss_pred eEeCCCCCe
Q psy17325 52 LCTCPPGEI 60 (461)
Q Consensus 52 ~C~C~~G~~ 60 (461)
.|.|++||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 367777774
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=80.58 E-value=51 Score=30.95 Aligned_cols=202 Identities=9% Similarity=0.024 Sum_probs=115.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE-----EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI-----VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~-----~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.+.++++-.....+|.+-+.+..|.+.+++..... ..+.+.-....++++-+... +++=.. -...+...++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~s--wD~~lrlWDl 92 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSAS--WDGTLRLWDL 92 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEecc--ccceEEEEEe
Confidence 45566666667788888888888888887755321 12223223467788887654 444333 3356777788
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
.+...+..+-....-..++||++.+..|. +-+... +|..-+.-|.
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSrDk----------------------------------Tiklwnt~g~ 137 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSRDK----------------------------------TIKLWNTLGV 137 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceee-cCCCcc----------------------------------eeeeeeeccc
Confidence 76544434433445678899997666553 222221 2333333333
Q ss_pred ceEEEEeCC-e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 305 NASILVSGQ-L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 305 ~~~~l~~~~-~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
-.-++.... . ..-+.+.|.+...|+...+ ....+..-++++-..+.-....-+.-+-+++. .+|.
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s-----------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGs 205 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS-----------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGS 205 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-----------CCceEEEEccCCcchhhccccccccEEEEEEC-CCCC
Confidence 333333322 1 4455566665555544333 12234344566554443332556677888897 5677
Q ss_pred EEEEcCCCCeEEEEEecCCCCe
Q psy17325 382 VYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
|.-.-.+.+.+.-.+++ .|++
T Consensus 206 lcasGgkdg~~~LwdL~-~~k~ 226 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLN-EGKN 226 (315)
T ss_pred EEecCCCCceEEEEEcc-CCce
Confidence 77777778888888885 5655
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=80.05 E-value=67 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.6
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
+..+++ .+++||+.+. .+.+..++.. +|..
T Consensus 287 ~~~~~~--~~~~vy~~~~-~g~l~ald~~-tG~~ 316 (394)
T PRK11138 287 VNDFAV--DGGRIYLVDQ-NDRVYALDTR-GGVE 316 (394)
T ss_pred ccCcEE--ECCEEEEEcC-CCeEEEEECC-CCcE
Confidence 444556 5789999864 5788888883 5543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 461 | ||||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 4e-46 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 5e-42 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 6e-41 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 1e-05 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 3e-40 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 3e-39 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 2e-38 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-37 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 2e-25 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 3e-37 | ||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 2e-25 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 8e-37 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 3e-25 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 9e-37 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 3e-25 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 2e-24 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 5e-17 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 3e-24 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 6e-17 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 3e-24 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 5e-17 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 5e-22 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 7e-13 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 1e-18 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 7e-12 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 3e-06 | ||
| 1hz8_A | 82 | Solution Structure And Backbone Dynamics Of A Conca | 3e-09 | ||
| 2w2m_E | 107 | Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = | 1e-08 | ||
| 3bps_E | 83 | Pcsk9:egf-a Complex Length = 83 | 2e-08 | ||
| 2w2n_E | 107 | Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr | 3e-08 | ||
| 1hj7_A | 80 | Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Ep | 3e-08 | ||
| 3gcw_E | 83 | Pcsk9:egfa(H306y) Length = 83 | 5e-08 | ||
| 1dx5_I | 118 | Crystal Structure Of The Thrombin-Thrombomodulin Co | 3e-06 | ||
| 1z6c_A | 87 | Solution Structure Of An Egf Pair (Egf34) From Vita | 5e-05 | ||
| 3h5c_B | 317 | X-Ray Structure Of Protein Z-Protein Z Inhibitor Co | 3e-04 | ||
| 1apq_A | 53 | Structure Of The Egf-Like Module Of Human C1r, Nmr, | 8e-04 |
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor Length = 82 | Back alignment and structure |
|
| >pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = 107 | Back alignment and structure |
|
| >pdb|3BPS|E Chain E, Pcsk9:egf-a Complex Length = 83 | Back alignment and structure |
|
| >pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr Length = 107 | Back alignment and structure |
|
| >pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal Growth Factor-Like Domains, 20 Structures Length = 80 | Back alignment and structure |
|
| >pdb|3GCW|E Chain E, Pcsk9:egfa(H306y) Length = 83 | Back alignment and structure |
|
| >pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 118 | Back alignment and structure |
|
| >pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K- Dependent Protein S Length = 87 | Back alignment and structure |
|
| >pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317 | Back alignment and structure |
|
| >pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19 Structures Length = 53 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 236 bits (602), Expect = 6e-70
Identities = 100/415 (24%), Positives = 168/415 (40%), Gaps = 93/415 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 285 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 344
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN---------- 112
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+
Sbjct: 345 AQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 403
Query: 113 -------------------------------HSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+ + ++ I L+
Sbjct: 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 463
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
++ + +GLA DWI +IYW DS L + V D G R L ++N ++PR +++DP
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 524 VHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG--QLYEALA 319
I +++G N ++ +L +
Sbjct: 582 ISS----------------------------------IDVNGGNRKTILEDEKRLAHPFS 607
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 374
L + ++ WTD N I + +++ + P +
Sbjct: 608 LAVFEDKVF-----------WTDI-INEAIFSANRLTGSDVNLLAENLLSPEDMV 650
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 3e-45
Identities = 89/451 (19%), Positives = 155/451 (34%), Gaps = 107/451 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNT--------------CHPTPL 49
C++ + CDG DC + +DE C +A C+ CS+ C
Sbjct: 205 ECIHSSWRCDGGPDCKDKSDEE-NCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSD 263
Query: 50 GALCT------------CPPGEILSNDSV----------------TCQDMNECEQPGYCS 81
C C GE ++ D V C + G CS
Sbjct: 264 EVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 323
Query: 82 QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+C + K Y C C +G+ L C+ I+ S L +
Sbjct: 324 HVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQ--------LCVNLEGGYKC 374
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
A +G Y + + + + + L + + LD
Sbjct: 375 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN---LRNVVALDT 431
Query: 202 SPGTRWLFWTDWGENPRIERIGMDG----SNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
+ ++W+D I +D S+ T+IS I P+GL +D +Y+ DS
Sbjct: 432 EVASNRIYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 490
Query: 258 KLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE- 316
L + A+ G L +
Sbjct: 491 VLG----------------------------------TVSVADTKGVKRKTLFRENGSKP 516
Query: 317 -ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
A+ +D +G +++WTDWG +I++ G++G + ++++ I WPNG+TL
Sbjct: 517 RAIVVDPVHG-----------FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 565
Query: 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406
D+ + R+Y+ DSKL I + +G R+ ++
Sbjct: 566 DLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN-TCHPTPL--GALCTCPPGE 59
+RC+ CDG+ DC NG+DE GC C C + C + C G
Sbjct: 77 NRCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 135
Query: 60 ILSN--------DSVTCQDMNECEQPGYCSQM--CTNTKGSYICSCNEGYVLEYDNHTC 108
++ S C Q C C + + C YV + D+ C
Sbjct: 136 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 194
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 9e-05
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 21/119 (17%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNT--------------CHPTPL 49
+C++ VCD DC +G+DE C + C C+++ C
Sbjct: 117 KCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 175
Query: 50 GALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C + DS C G C S+ C + D C
Sbjct: 176 EWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIH------SSWRCDGGPDCKDKSDEENC 228
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-04
Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNT---CHPTPL---------- 49
+C++ VCDG +C +G+DE C CK C C P
Sbjct: 35 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDN 94
Query: 50 GALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGY 99
G+ P + S D C D + C GS SC
Sbjct: 95 GSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT 144
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 229 bits (584), Expect = 5e-68
Identities = 99/415 (23%), Positives = 167/415 (40%), Gaps = 93/415 (22%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ L KVC+ DC + +DE C EC G CS+ C+ +G C CP G L
Sbjct: 267 ECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV 326
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI----------- 111
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CKA+
Sbjct: 327 AQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 385
Query: 112 ------------------------------NHSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+ + ++ I L+
Sbjct: 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 445
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
++ + +GLA DWI +IYW DS L + V D G R L ++ ++PR +++DP
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261
G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 506 VHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563
Query: 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG--QLYEALA 319
I +++G N ++ +L +
Sbjct: 564 ISS----------------------------------IDVNGGNRKTILEDEKRLAHPFS 589
Query: 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 374
L + ++ WTD N I + +++ + P +
Sbjct: 590 LAVFEDKVF-----------WTDI-INEAIFSANRLTGSDVNLLAENLLSPEDMV 632
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 165 bits (418), Expect = 9e-45
Identities = 88/451 (19%), Positives = 162/451 (35%), Gaps = 107/451 (23%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN--------------------- 42
C++ + CDG DC + +DE C +A C+ CS+
Sbjct: 187 ECIHSSWRCDGGPDCKDKSDEEN-CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSD 245
Query: 43 --TCHPTPLGA---LCTCPPGEILSNDSV----------------TCQDMNECEQPGYCS 81
C L C GE ++ D V C + G CS
Sbjct: 246 EVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 305
Query: 82 QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQ 141
+C + K Y C C +G+ L C+ I+ + E G + +
Sbjct: 306 HVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQ-----DPDTCSQLCVNLEGGYKCQCE 359
Query: 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP 201
+ A ++++ + R D + ++ N+ + LD
Sbjct: 360 EGFQLDPHTKACKAVG-SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV-----VALDT 413
Query: 202 SPGTRWLFWTDWGENPRIERIGMDGSNRST----IISTKIYWPNGLTLDIATRRVYFADS 257
+ ++W+D + I +D ++ + +IS I P+GL +D +Y+ DS
Sbjct: 414 EVASNRIYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 472
Query: 258 KLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE- 316
L + A+ G L Q +
Sbjct: 473 VLG----------------------------------TVSVADTKGVKRKTLFREQGSKP 498
Query: 317 -ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
A+ +D +G +++WTDWG +I++ G++G + ++++ I WPNG+TL
Sbjct: 499 RAIVVDPVHG-----------FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 547
Query: 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406
D+ + R+Y+ DSKL I + +G R+ ++
Sbjct: 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 28/118 (23%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN-TCHPTPLG--ALCTCPPGEI 60
RC+ CDG+ DC NG+DE GC C C + C + C G
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSD 118
Query: 61 -LSNDSVTCQDMNECEQPGYCSQM---------CTNTKGSYICSCNEGYVLEYDNHTC 108
S +TC + C C + + C YV + D+ C
Sbjct: 119 EASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
C+ CD DC +G+DE P + F S+ C C GE +
Sbjct: 137 STCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFE----FHCLSGECIH 190
Query: 63 NDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEG 98
+ C +C+ T C++G
Sbjct: 191 SSWR-CDGGPDCKDKSDEENCAVATCRPDEFQCSDG 225
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 216 bits (550), Expect = 4e-66
Identities = 106/396 (26%), Positives = 153/396 (38%), Gaps = 99/396 (25%)
Query: 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTK 88
C G C+ C CTC G L+ D TCQD+NEC + GYCSQ CTN++
Sbjct: 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 89 GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGL 148
G++ C C GY L D +CKA+ L +
Sbjct: 62 GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI----------------------- 98
Query: 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWL 208
+ + + + LD +
Sbjct: 99 -------------RQVLPHRSEYTLLLNN---------------LENAIALDFHHRRELV 130
Query: 209 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268
FW+D RI R ++GSN ++ST + P GL +D ++Y+ DS
Sbjct: 131 FWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS-------- 181
Query: 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGM 326
+I AN+DG++ +L+ L + A+AL G
Sbjct: 182 --------------------------RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG- 214
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D
Sbjct: 215 ----------TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264
Query: 387 SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDN 422
+K I+ N DG+ R+ VI L F + D+
Sbjct: 265 AKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDS 300
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 6e-61
Identities = 93/358 (25%), Positives = 140/358 (39%), Gaps = 56/358 (15%)
Query: 17 DCPNG---ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73
C G ++G C + G CS C + C C G L D +C+ +
Sbjct: 27 TCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP 86
Query: 74 CEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA-INHSAAFLIISNRHSILVADLE 132
+ +++ + + F IL A+L
Sbjct: 87 EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146
Query: 133 EKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
+++V +GL+ GLA DW+ +YW DS +RIEV + +G +R VL ++
Sbjct: 147 GSNV----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLE 202
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
+PR + L P G ++WTDWG PRIE MDGS R I T ++WPNGLT+D A RR+
Sbjct: 203 KPRAIALHPMEG--TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM 260
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+ D+K I+ AN+DGS+ ++S
Sbjct: 261 YWVDAKHHVIER----------------------------------ANLDGSHRKAVISQ 286
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370
L A+ + LY WTDW I II K+++P
Sbjct: 287 GLPHPFAITVFEDSLY-----------WTDW-HTKSINSANKFTGKNQEIIRNKLHFP 332
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 65.9 bits (160), Expect = 7e-12
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 334 CTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393
+FW+D RI R ++GSN ++ST + P GL +D ++Y+ DS I+
Sbjct: 126 RRELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIE 184
Query: 394 FCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYS 439
N DG R+ ++ L A+AL G +Y++
Sbjct: 185 VANLDGAHRKVLLWQSL-----------EKPRAIALHPMEGTIYWT 219
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 60 ILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
L + G C+ +C + +Y C+C G+ ++H C
Sbjct: 337 TLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 384
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 210 bits (535), Expect = 1e-63
Identities = 75/373 (20%), Positives = 138/373 (36%), Gaps = 55/373 (14%)
Query: 18 CPNG---ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
CP+G + D+ EC+ CS C G C C G L + C+ +
Sbjct: 25 CPDGFQLVAQRRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 83
Query: 75 EQPGY-CSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEE 133
+ + L + + + ++ I L+
Sbjct: 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143
Query: 134 KGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ 193
++ + +GLA DWI +IYW DS L + V D G R L ++N ++
Sbjct: 144 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 203
Query: 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 253
PR +++DP G +++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y
Sbjct: 204 PRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 261
Query: 254 FADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG- 312
+ DSKL I +++G N ++
Sbjct: 262 WVDSKLHSISS----------------------------------IDVNGGNRKTILEDE 287
Query: 313 -QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPN 371
+L +L + ++ WTD N I + +++ + P
Sbjct: 288 KRLAHPFSLAVFEDKVF-----------WTDI-INEAIFSANRLTGSDVNLLAENLLSPE 335
Query: 372 GLTLDIATRRVYF 384
+ L +
Sbjct: 336 DMVLFHNLTQPRG 348
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 4e-63
Identities = 90/410 (21%), Positives = 153/410 (37%), Gaps = 107/410 (26%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC G CS+ C+ +G C CP G L C+D++EC+ P CSQ+C N +G Y
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 92 ICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLV 151
C C EG+ L+ CKA S A+L +NRH + L+ ++
Sbjct: 61 KCQCEEGFQLDPHTKACKA-VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV----- 114
Query: 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211
L + IYW D I + +
Sbjct: 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAH----------------------------- 145
Query: 212 DWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271
S+ T+IS I P+GL +D +Y+ DS L
Sbjct: 146 -------------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG----------- 181
Query: 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYY 329
+ A+ G L + A+ +D +G
Sbjct: 182 -----------------------TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG---- 214
Query: 330 STLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL 389
+++WTDWG +I++ G++G + ++++ I WPNG+TLD+ + R+Y+ DSKL
Sbjct: 215 -------FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267
Query: 390 DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYS 439
I + +G R+ ++ + + +L + ++++
Sbjct: 268 HSISSIDVNGGNRKTILEDEKRL-----------AHPFSLAVFEDKVFWT 306
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 56 PPGEILSNDSVTCQDMNECEQP----GYCSQMC------TNTKGSYICSCNEGYVLEYDN 105
P +L ++ + +N CE+ G C +C + C+C +G +L D
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 393
Query: 106 HTC 108
+C
Sbjct: 394 RSC 396
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 195 bits (496), Expect = 1e-58
Identities = 101/337 (29%), Positives = 143/337 (42%), Gaps = 87/337 (25%)
Query: 72 NECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADL 131
NEC + GYCSQ CTN++G++ C C GY L D +CKA+ L+ +NR I
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEP-VLLFANRIDIRQVLP 60
Query: 132 EEKGK---------------DHRA-----------------------QDIVVSGLDLVEG 153
HR +++V +GL+ G
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 120
Query: 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW 213
LA DW+ +YW DS +RIEV + +G +R VL ++ +PR + L P G ++WTDW
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--TIYWTDW 178
Query: 214 GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273
G PRIE MDGS R I T ++WPNGLT+D A RR+Y+ D+K I+
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER--------- 229
Query: 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLK 333
AN+DGS+ ++S L A+ + LY
Sbjct: 230 -------------------------ANLDGSHRKAVISQGLPHPFAITVFEDSLY----- 259
Query: 334 CTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370
WTDW I II K+++P
Sbjct: 260 ------WTDWHTK-SINSANKFTGKNQEIIRNKLHFP 289
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 2e-12
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 335 TRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDF 394
+FW+D RI R ++GSN ++ST + P GL +D ++Y+ DS I+
Sbjct: 84 RELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEV 142
Query: 395 CNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
N DG R+ ++ L A+AL G +Y++ G
Sbjct: 143 ANLDGAHRKVLLWQSL-----------EKPRAIALHPMEGTIYWTDWG 179
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 73 ECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+ G C+ +C + +Y C+C G+ ++H C
Sbjct: 307 CGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHAC 341
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 5e-56
Identities = 66/256 (25%), Positives = 97/256 (37%), Gaps = 55/256 (21%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ SI A L I+ L EG+A D +G I+W DS+L+RIEV +G
Sbjct: 55 ISEPSIGRASLHGGEP----TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYW 239
T R VL + PRG++ DP G L+WTDW +NP+IE MDG+NR + +
Sbjct: 111 TQRRVLFDTGLVNPRGIVTDPVRG--NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL 168
Query: 240 PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299
PNGLT D + ++ + D+ +
Sbjct: 169 PNGLTFDAFSSQLCWVDAGTH----------------------------------RAECL 194
Query: 300 NMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSN 358
N ++ G L A+ LY +TDW N + + +
Sbjct: 195 NPAQPGRRKVLEG-LQYPFAVTSYGKNLY-----------YTDWKTN-SVIAMDLAISKE 241
Query: 359 RSTIISTKIYWPNGLT 374
T K G+T
Sbjct: 242 MDTFHPHKQTRLYGIT 257
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-50
Identities = 62/296 (20%), Positives = 102/296 (34%), Gaps = 53/296 (17%)
Query: 115 AAFLIISNRHSILVADLEEK-GKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRI 173
L+ + I LE K A+ + ++ GLA+D + +YW D I
Sbjct: 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 174 EVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTII 233
+G + + ++ P G+ LD R +FWTD + RIE MDG+ R +
Sbjct: 61 GRASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLD-RIEVAKMDGTQRRVLF 117
Query: 234 STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293
T + P G+ D LYW D +
Sbjct: 118 DTGLVNPRGIVTDPVR------------------------------GNLYWTDWNRDNP- 146
Query: 294 LKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351
KI ++MDG+N IL L L D + L W D G + R E
Sbjct: 147 -KIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC-----------WVDAGTH-RAEC 193
Query: 352 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407
+ R ++ + +P +T + +Y+ D K + + + +
Sbjct: 194 LNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 2e-19
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 30/160 (18%)
Query: 295 KIGKANMDGSNASILVSGQLYE-------ALALDLENGMLYYSTLKCTRWLFWTDWGENP 347
KI + ++ + + LA D + ++Y WTD P
Sbjct: 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVY-----------WTDIS-EP 58
Query: 348 RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407
I R + G +TII + P G+ LD R +++ DS+LD I+ DGT R+ +
Sbjct: 59 SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD 118
Query: 408 IDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447
L + D G LY++ + K
Sbjct: 119 TGL-----------VNPRGIVTDPVRGNLYWTDWNRDNPK 147
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 3e-50
Identities = 102/430 (23%), Positives = 165/430 (38%), Gaps = 111/430 (25%)
Query: 106 HTCKAINHSAAFLIISNRHSILVADLEEKGKD---------------------------- 137
H +H A L+ +NR + + D ++
Sbjct: 1 HHHHH-HHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV 59
Query: 138 -------------HRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI 184
Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R
Sbjct: 60 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119
Query: 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT 244
VL + QPR + LDPS + +++WTDWGE P+IER GMDGS+R II+++IYWPNGLT
Sbjct: 120 VLFWQELDQPRAIALDPS--SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 177
Query: 245 LDIATRRVYFADSKLDFIDCKSLE-------IKTNVNYS---TIFR-KLYWIDEGGNGVP 293
LD +++Y+AD+KL+FI +L+ +K ++ + T+F LYW D +
Sbjct: 178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHS-- 235
Query: 294 LKIGKANMDGSNASILVSGQLYEALALDLENGMLY------------------------- 328
I N + ++ + + +
Sbjct: 236 --ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP 293
Query: 329 -YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII---------------STKIYWPNG 372
Y T + + + R+ + I
Sbjct: 294 FYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
Query: 373 LTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE 432
+ D +Y+ D ++ I DG+G Q V+ + +A+D
Sbjct: 354 IDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI-----------AHPDGIAVDWV 402
Query: 433 NGMLYYSTEG 442
LY++ G
Sbjct: 403 ARNLYWTDTG 412
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 162 bits (410), Expect = 5e-44
Identities = 82/332 (24%), Positives = 137/332 (41%), Gaps = 57/332 (17%)
Query: 38 GLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNE 97
G CS+ C +P+ C + + + ++ + S
Sbjct: 280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFT 339
Query: 98 GYVLEYDN-HTCKAI----NHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVE 152
VL+ ++ AI + +I + ++ G Q +V + + +
Sbjct: 340 DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----QFVVTAQIAHPD 395
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTD 212
G+A DW+ ++YW D+ +RIEV NGT R +L +++ +PR ++LDP G +++WTD
Sbjct: 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVG--YMYWTD 453
Query: 213 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272
WGE P+IER +DGS+R +++T + WPNGL LD ++Y+ D+K D
Sbjct: 454 WGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD------------ 501
Query: 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTL 332
KI N DG+ +LV ++ L +Y
Sbjct: 502 ----------------------KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVY---- 535
Query: 333 KCTRWLFWTDWGENPRIERIGMDGSNRSTIIS 364
WTDW IER+ + R II
Sbjct: 536 -------WTDWQRR-SIERVHKRSAEREVIID 559
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 5e-38
Identities = 78/353 (22%), Positives = 133/353 (37%), Gaps = 95/353 (26%)
Query: 72 NECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADL 131
G CS +C + C ++ + + + L+++ R + L
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333
Query: 132 EEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNI 191
+ D + + + + YD + G+IYW D
Sbjct: 334 D--TPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD----------------------- 368
Query: 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR 251
E I R +DGS +++ +I P+G+ +D R
Sbjct: 369 -----------------------EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARN 405
Query: 252 VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS 311
+Y+ D+ D +I ++G+ IL+S
Sbjct: 406 LYWTDTGTD----------------------------------RIEVTRLNGTMRKILIS 431
Query: 312 GQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 369
L E A+ LD G +++WTDWGE P+IER +DGS+R +++T + W
Sbjct: 432 EDLEEPRAIVLDPMVG-----------YMYWTDWGEIPKIERAALDGSDRVVLVNTSLGW 480
Query: 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDN 422
PNGL LD ++Y+ D+K D I+ N DGTGR+ ++ + F L+GD
Sbjct: 481 PNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDY 533
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 93.7 bits (232), Expect = 1e-20
Identities = 64/343 (18%), Positives = 118/343 (34%), Gaps = 54/343 (15%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ + I ++L+ G + +A V L L +YW D + I C++
Sbjct: 190 AKLNFIHKSNLD--GTNRQAV--VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYT 243
Query: 181 TNRIVLAKDNITQPRG---------------MMLDPSPGTRWLFWTDWGENPRIE-RIGM 224
+ +I P +D + + + G+
Sbjct: 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGV 303
Query: 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN--YSTIFRKL 282
L RR+ I + +I+ + Y + +
Sbjct: 304 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYI 363
Query: 283 YWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENGMLYYSTLKCTRWLFW 340
YW D+ I ++ +DGS + +V+ Q+ + +A+D LY W
Sbjct: 364 YWTDDEVR----AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLY-----------W 408
Query: 341 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS-KLDFIDFCNYDG 399
TD G + RIE ++G+ R +IS + P + LD +Y+ D ++ I+ DG
Sbjct: 409 TDTGTD-RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG 467
Query: 400 TGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ R ++ L NG LALD + G +Y+
Sbjct: 468 SDRVVLV--------NTSLGWPNG---LALDYDEGKIYWGDAK 499
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 1e-06
Identities = 14/67 (20%), Positives = 21/67 (31%)
Query: 42 NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVL 101
+ + G +N E+ G CS +C C+C G+ L
Sbjct: 550 RSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFEL 609
Query: 102 EYDNHTC 108
D TC
Sbjct: 610 ISDMKTC 616
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 5e-04
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 38 GLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
G CS+ C P G C CP G L +D TC
Sbjct: 586 GGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 8e-49
Identities = 93/298 (31%), Positives = 132/298 (44%), Gaps = 89/298 (29%)
Query: 114 SAAFLIISNRHSILVADLEEKGKD------------------------------------ 137
SA L+ +NR + + D ++
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 138 -----HRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNIT 192
Q++VVSGL +GLA DW+G +YW DS NRIEV + +G+ R VL +
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 252
QPR + LDPS + +++WTDWGE P+IER GMDGS+R II+++IYWPNGLTLD +++
Sbjct: 123 QPRAIALDPS--SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312
Y+AD+KL+FI +N+DG+N +V G
Sbjct: 181 YWADAKLNFIHK----------------------------------SNLDGTNRQAVVKG 206
Query: 313 QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370
L AL L +LY WTDW + I I + I+ P
Sbjct: 207 SLPHPFALTLFEDILY-----------WTDWSTH-SILACNKYTGEGLREIHSDIFSP 252
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 7e-19
Identities = 43/241 (17%), Positives = 83/241 (34%), Gaps = 65/241 (26%)
Query: 207 WLFWTDWGENPRIERIGM-DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265
L + + + + + +G +TI+ + + + +Y++D +
Sbjct: 6 LLLYANRRD---LRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE----- 57
Query: 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-SILVSGQLY--EALALDL 322
I + + + + +V L + LA D
Sbjct: 58 -----------------------------AIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
LY WTD N RIE +DGS R + ++ P + LD ++ +
Sbjct: 89 LGEKLY-----------WTDSETN-RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM 136
Query: 383 YFAD-SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTE 441
Y+ D ++ I+ DG+ R +I +++ NG L LD E LY++
Sbjct: 137 YWTDWGEVPKIERAGMDGSSRFIII--------NSEIYWPNG---LTLDYEEQKLYWADA 185
Query: 442 G 442
Sbjct: 186 K 186
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 4e-05
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 56 PPGEILSNDSVTCQDMNECEQPGYCSQMCTNT--KGSYICSCNEGYVLEYDNHTCKAIN 112
S G CS +C + K Y C+C G L + TCK N
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 5e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 38 GLCSNTCHPTPL--GALCTCPPGEILSNDSVTCQDMNECEQP 77
G CS+ C +P+ C CP G L + TC+D N
Sbjct: 275 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 2e-48
Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 117 FLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVC 176
+ ++ I L+ ++ + +GLA DWI +IYW DS L + V
Sbjct: 45 YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104
Query: 177 DENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTK 236
D G R L ++N ++PR +++DP G +++WTDWG +I++ G++G + ++++
Sbjct: 105 DTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162
Query: 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296
I WPNG+TLD+ + R+Y+ DSKL I
Sbjct: 163 IQWPNGITLDLLSGRLYWVDSKLH----------------------------------SI 188
Query: 297 GKANMDGSNASILVSGQLYEA--LALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI-G 353
+++G N ++ + A +L + ++ WTD I
Sbjct: 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF-----------WTDIINE-AIFSANR 236
Query: 354 MDGSNRSTIIST 365
+ GS+ + +
Sbjct: 237 LTGSDVNLLAEN 248
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 4e-43
Identities = 60/326 (18%), Positives = 110/326 (33%), Gaps = 105/326 (32%)
Query: 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEV 175
A+L +NRH + L D ++ L V L + IYW D I
Sbjct: 2 AYLFFTNRHEVRKMTL-----DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICS 56
Query: 176 CDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235
+ + S+ T+IS
Sbjct: 57 TQLDRAH------------------------------------------GVSSYDTVISR 74
Query: 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295
I P+GL +D +Y+ DS L
Sbjct: 75 DIQAPDGLAVDWIHSNIYWTDSVLG----------------------------------T 100
Query: 296 IGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353
+ A+ G L + A+ +D +G +++WTDWG +I++ G
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHG-----------FMYWTDWGTPAKIKKGG 149
Query: 354 MDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVE 413
++G + ++++ I WPNG+TLD+ + R+Y+ DSKL I + +G R+ ++ +
Sbjct: 150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE---- 205
Query: 414 FTNDLMGDNGVPALALDLENGMLYYS 439
+L + ++++
Sbjct: 206 -------KRLAHPFSLAVFEDKVFWT 224
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 5e-16
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 295 KIGKANMDGSNASILVSGQLY-EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353
++ K +D S + L+ AL ++ + +Y W+D + I
Sbjct: 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY-----------WSDLSQR-MICSTQ 58
Query: 354 MDGSNRST----IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409
+D ++ + +IS I P+GL +D +Y+ DS L + + G R+ + +
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
Query: 410 LMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+ A+ +D +G +Y++ G
Sbjct: 119 G-----------SKPRAIVVDPVHGFMYWTDWG 140
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 56 PPGEILSNDSVTCQDMNECEQP----GYCSQMCTNT------KGSYICSCNEGYVLEYDN 105
P +L ++ + +N CE+ G C +C + C+C +G +L D
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 106 HTC 108
+C
Sbjct: 312 RSC 314
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-47
Identities = 74/374 (19%), Positives = 131/374 (35%), Gaps = 66/374 (17%)
Query: 12 CDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGAL-CTCPPGEILSNDSVTCQD 70
EC G CS+ C P+G C CP L+ D+ TC
Sbjct: 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306
Query: 71 MNECE---QPGYCSQMCTNTKGSY-----ICSCNEGYVLEYDNHTCKAINHSAAFLIISN 122
Q ++M + + S I S ++YD + + I S
Sbjct: 307 PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQL------YWIDSR 360
Query: 123 RHSILVADLEEKGKDHRAQDIVVS--GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
++ I A + V S L+ D +IYW N I V +G
Sbjct: 361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYW 239
+ V+ K +PR ++++P ++++T+ +P+IER +DG+ R + + +
Sbjct: 421 RSVGVVLKGEQDRPRAVVVNPE--KGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSK 478
Query: 240 PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299
P L LD ++++ADS L +I +
Sbjct: 479 PIALALDSRLGKLFWADSDLR----------------------------------RIESS 504
Query: 300 NMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR 359
++ G+N +L + + + L + LY W D + IE+I M G
Sbjct: 505 DLSGANRIVLEDSNILQPVGLTVFENWLY-----------WIDKQQQ-MIEKIDMTGREG 552
Query: 360 STIISTKIYWPNGL 373
T + +I + +
Sbjct: 553 RTKVQARIAQLSDI 566
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 3e-47
Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 64/369 (17%)
Query: 122 NRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT 181
+ +I A + + +V GLD EG+A DW+G ++YW D+ NRIEV +G
Sbjct: 57 SLKTISRAFMNGSAL----EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112
Query: 182 NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPN 241
+R VL ++ PR + LDP+ +++WT+WG P+I+R MDGS R+T++ + N
Sbjct: 113 HRQVLVWKDLDSPRALALDPA--EGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRAN 169
Query: 242 GLTLDIATRRVYFADSKLDFIDCKSLE------IKTNVNYS---TIFRK-LYWIDEGGNG 291
GLT+D A RR+Y+ D + I+ ++ I ++ + T ++ +YW D
Sbjct: 170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRR- 228
Query: 292 VPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTR--------------- 336
I +AN ++ G L + + + + +C
Sbjct: 229 ---SIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVG 285
Query: 337 ---------------------WLFWTDWGENPRIERIGMDGSNRSTII--STKIYWPNGL 373
+ + + I R+ +D II + +
Sbjct: 286 GFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAI 345
Query: 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLEN 433
D +++Y+ DS+ + I DG+ V++ + + L++D+ +
Sbjct: 346 DYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSV-----PSQNLEIQPYDLSIDIYS 400
Query: 434 GMLYYSTEG 442
+Y++ E
Sbjct: 401 RYIYWTCEA 409
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 151 bits (381), Expect = 5e-40
Identities = 70/381 (18%), Positives = 128/381 (33%), Gaps = 107/381 (28%)
Query: 53 CTCPPGEILSNDSVTCQDMNECEQP-GYCSQMCTNT-KGSYICSCNEGYVLEYDNHTCKA 110
+IL S NEC G+CS +C G ++C C Y L DN TC A
Sbjct: 247 HLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306
Query: 111 INHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL 170
F S + +I ++ + + + L V + YD + +YW+DSR
Sbjct: 307 PTTFLLF---SQKSAINRMVID--EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR- 360
Query: 171 NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230
I + DGS
Sbjct: 361 ---------------------------------------------QNMIRKAQEDGSQGF 375
Query: 231 TIISTKI------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYW 284
T++ + + P L++DI +R +Y+ +
Sbjct: 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN------------------------ 411
Query: 285 IDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTD 342
I +DG + +++ G+ A+ ++ E G +Y +T+
Sbjct: 412 ----------VINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMY-----------FTN 450
Query: 343 WG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG 401
+P+IER +DG+ R + + + P L LD ++++ADS L I+ + G
Sbjct: 451 LQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510
Query: 402 RQQVILIDLMVEFTNDLMGDN 422
R + +++ + +
Sbjct: 511 RIVLEDSNILQPVGLTVFENW 531
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 5e-38
Identities = 78/297 (26%), Positives = 108/297 (36%), Gaps = 55/297 (18%)
Query: 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEV 175
AFL+ S R I LE ++ I ++G+ L +D IYW D L I
Sbjct: 7 AFLLFSRRADIRRISLE---TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 176 CDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235
NG+ + + + P GM +D + L+W D G N RIE +DG +R ++
Sbjct: 64 AFMNGSALEHVVEFGLDYPEGMAVDWL--GKNLYWADTGTN-RIEVSKLDGQHRQVLVWK 120
Query: 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295
+ P L LD A +YW + GG K
Sbjct: 121 DLDSPRALALDPAE------------------------------GFMYWTEWGGKP---K 147
Query: 296 IGKANMDGSNASILVSG-QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM 354
I +A MDGS + LV L +D LY WTD N IE M
Sbjct: 148 IDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLY-----------WTDLDTN-LIESSNM 195
Query: 355 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM 411
G NR I + P GLT +Y+ D I+ N + +I L
Sbjct: 196 LGLNREVIADD-LPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQNRTIIQGHLD 249
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 51/332 (15%)
Query: 135 GKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQP 194
D + +V + GL D+ +YW D N IE + G NR V+A D++ P
Sbjct: 152 AMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA-DDLPHP 210
Query: 195 RGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 254
G+ +++WTDW IER TII + + + + ++R+ +
Sbjct: 211 FGLTQYQ----DYIYWTDWS-RRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGW 265
Query: 255 ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL------------KIGKANMD 302
+ C L + V ++ N I + +D
Sbjct: 266 NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVID 325
Query: 303 GSNASILV----SGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN 358
+ ++ S + A+ D + LY W D I + DGS
Sbjct: 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLY-----------WIDS-RQNMIRKAQEDGSQ 373
Query: 359 RSTIISTKI------YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMV 412
T++ + + P L++DI +R +Y+ + I+ DG V+ +
Sbjct: 374 GFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQ-- 431
Query: 413 EFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444
+ A+ ++ E G +Y++
Sbjct: 432 ---------DRPRAVVVNPEKGYMYFTNLQER 454
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 95.3 bits (236), Expect = 4e-21
Identities = 58/352 (16%), Positives = 111/352 (31%), Gaps = 69/352 (19%)
Query: 121 SNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180
+ + I +++ G + ++ L GL +IYW D IE ++
Sbjct: 185 LDTNLIESSNML--GLNRE---VIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTS 237
Query: 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240
+ + ++ +++ + W E + P
Sbjct: 238 GQNRTIIQGHLDYVMDILVF-----HSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCP 292
Query: 241 NGLTLDIATRRVYFADSKLDFIDC--------------------KSLEIKTNVNYSTIFR 280
+L+ R + L F SL ++Y + +
Sbjct: 293 AHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDK 352
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--------YEALALDLENGMLYYSTL 332
+LYWID N I KA DGS +V + L++D+ + +Y
Sbjct: 353 QLYWIDSRQN----MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIY---- 404
Query: 333 KCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF- 391
WT N I +DG + ++ + P + ++ +YF + +
Sbjct: 405 -------WTCEATN-VINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP 456
Query: 392 -IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
I+ DGT R+ + + L LALD G L+++
Sbjct: 457 KIERAALDGTEREVLF--------FSGLSKPIA---LALDSRLGKLFWADSD 497
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 337 WLFWTDWGENPRIERIGMDGSNRSTII-STKIYWPNGLTLDIATRRVYFADSKLDFIDFC 395
+L ++ + I RI ++ +N + I T + + L D+ R+Y+ D L I
Sbjct: 8 FLLFSRRAD---IRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRA 64
Query: 396 NYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+G+ + V+ L + +A+D LY++ G
Sbjct: 65 FMNGSALEHVVEFGL-----------DYPEGMAVDWLGKNLYWADTG 100
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 8e-33
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG--CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEIL 61
+ D P + EC G CS C+ +G C CP G L
Sbjct: 5 HHHH----PMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQL 60
Query: 62 SNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
C+D++EC+ P CSQ+C N +G Y C C EG+ L+ CK
Sbjct: 61 VAQR-RCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 107
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-24
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 32 ECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGS 90
EC K +C C P C CP G + S +C+D++EC + C+Q+C N G
Sbjct: 5 ECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNYPGG 63
Query: 91 YICSCN--EGYVLEYDNHTCKAIN 112
Y C C+ +G+ L D +C+ ++
Sbjct: 64 YTCYCDGKKGFKLAQDQKSCEVVS 87
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-12
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 69 QDMNEC-EQPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+D++EC +P C + +C N G + C C EGY + +C+ I+
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDID 46
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 6e-23
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 5 CVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C L C G P + C C P A C CP G IL +
Sbjct: 16 CQPLD-QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEGYIL-D 72
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDN-HTC 108
D C D++ECE G+CS +C N G++ C C L C
Sbjct: 73 DGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 69 QDMNECEQPGYCSQMCTN-TKGSYICSCNEGYVL-EYDNHTCKAIN 112
+ ++ C + C C + SY+C C EG+ ++ H C+
Sbjct: 2 EPVDPCFRAN-CEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFC 46
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 2e-21
Identities = 29/264 (10%), Positives = 76/264 (28%), Gaps = 43/264 (16%)
Query: 160 GGHIYWLDSRL-NRIEVCDENGTNRIVLAKDNITQ--PRGMML---DPSPGTRWLFWTDW 213
G +++ ++ R+ + +G+N L+ D + +
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFS 84
Query: 214 GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF--------IDCK 265
+ + RI +G + + + + +Y+ ID +
Sbjct: 85 YDRNSLCRIKRNGHGSTVLDPDPCIYA-----SLIGNYIYYLHYDTQTATSLYRIRIDGE 139
Query: 266 SLEIKTNVNYSTIF---RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL 322
+ N T R Y+ + ++ + + + ++ Y+ + LD
Sbjct: 140 EKKKIKNHYLFTCNTSDRYFYYNNPKNG----QLYRYDTASQSEALFYDCNCYKPVVLD- 194
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
+++ D + I + ++ N + I N +
Sbjct: 195 ------------DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIF 238
Query: 383 YFADSKLDFIDFCNYDGTGRQQVI 406
Y + DGTG +++
Sbjct: 239 YQRGGDNPALCVVKNDGTGFKELA 262
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 1e-18
Identities = 41/326 (12%), Positives = 97/326 (29%), Gaps = 57/326 (17%)
Query: 96 NEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGK----DHRAQDIVVSGLDLV 151
N G E D F ++ + +++ + A I +
Sbjct: 17 NAGLFCESDGEVF--------FSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVY 68
Query: 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWT 211
+ + N + NG VL D + S ++++
Sbjct: 69 YVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-------CIYASLIGNYIYYL 121
Query: 212 DWGENP--RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-----DC 264
+ + RI +DG + I + ++ T + + R Y+ + K +
Sbjct: 122 HYDTQTATSLYRIRIDGEEKKKIKNHYLF-----TCNTSDRYFYYNNPKNGQLYRYDTAS 176
Query: 265 KSLEIKTNVNYSTIF----RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALAL 320
+S + + N +Y++D + I N++ N +L +
Sbjct: 177 QSEALFYDCNCYKPVVLDDTNVYYMDVNRDN---AIVHVNINNPNPVVLTEANIEHYNVY 233
Query: 321 DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 380
+F+ G+NP + + DG+ + + +++ ++
Sbjct: 234 G--------------SLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCN-----INVTSQ 274
Query: 381 RVYFADSKLDFIDFCNYDGTGRQQVI 406
VYF D + + + +
Sbjct: 275 YVYFTDFVSNKEYCTSTQNPDTIKAL 300
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 6e-07
Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 58/239 (24%)
Query: 207 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKS 266
+F+++ +N R+ + +DGSN + + + ++ VY+ + I ++
Sbjct: 27 EVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKNYVYYVRNNNQKITSQT 81
Query: 267 LEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGM 326
+ + + +G +++L + L
Sbjct: 82 FFSYDRNS---------------------LCRIKRNGHGSTVLDPDP---CIYASLIGNY 117
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
+YY + + RI +DG + I + ++ T + + R Y+ +
Sbjct: 118 IYYLH--------YDTQTAT-SLYRIRIDGEEKKKIKNHYLF-----TCNTSDRYFYYNN 163
Query: 387 SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF 445
K + + + + L++ +YY +
Sbjct: 164 PKNGQLYRYDTASQSEALFYDCNC---------------YKPVVLDDTNVYYMDVNRDN 207
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-20
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 18 CPNG---ADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
G + C L + + + LC G + +V +D++EC
Sbjct: 66 NEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDEC 125
Query: 75 EQ-PGYCS-QMCTNTKGSYICSCNEGYVLEYDNHTC 108
++ PG C C NT GS+ C C GY L D C
Sbjct: 126 QELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-18
Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSY 91
EC S C TP +C CPP L+ V C D Y G
Sbjct: 5 ECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--NCYLDIRPRGDNGDT 62
Query: 92 ICSCNEGYVLEYDNHTC 108
CS G + + C
Sbjct: 63 ACSNEIGVGVSKASCCC 79
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 8e-18
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 7/100 (7%)
Query: 17 DCPNG---ADEGPGC-DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
DCP GC D C+ G +S S C
Sbjct: 27 DCPPDFELNPTRVGCVDTRSGNCY---LDIRPRGDNGDTACSNEIGVGVSKASCCCSLGK 83
Query: 73 ECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
P ++ +C EG+ + I+
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDID 123
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 70 DMNECEQPGY-CSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
D+NEC P S C NT GSYIC C + L C
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTR 45
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-19
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 32 ECKHKFGLCSN-TCHPTPLGALCTCPPG-EILSNDSVTCQDMNECEQ-PGYC-SQMCTNT 87
EC+ LC C TP C C G E C D++EC++ P C +C NT
Sbjct: 5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNT 64
Query: 88 KGSYICSCNEGYVLEYDNHTC 108
+GSY C C G+ L + C
Sbjct: 65 EGSYRCECPPGHQLSPNISAC 85
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-17
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQP-GYCSQMCTNT 87
D+ ECK C T C CP G IL C D +EC + C N
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTCKNV 61
Query: 88 KGSYICSCNEGYVLEYDNHTCK 109
G + C+C EG+ TC+
Sbjct: 62 IGGFECTCEEGFEP-GPMMTCE 82
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-12
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 67 TCQDMNECEQPGYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+ DM+EC++P C C NT GSY C C GY+L + C +
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTD 45
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 3 DRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62
+ V DG+ + ++C G + T C G
Sbjct: 45 IKGTCWQTVIDGRCEININ----GATLKSQCCSSLG-AAWGSPCTLCQVDPICGKGYSR- 98
Query: 63 NDSVTCQDMNECEQ-PGYCS-QMCTNTKGSYICSCNEGYVLEYDNHTC 108
C+D++ECE PG C +C NT+GS+ C C G L+ C
Sbjct: 99 IKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
D++ECE + +C N+ GS+IC C+ L+ C
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETI 45
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 13/97 (13%), Positives = 21/97 (21%), Gaps = 25/97 (25%)
Query: 40 CSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE-QPGYCSQMC-------------- 84
+ C +P +C C L C + + C
Sbjct: 13 INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCC 72
Query: 85 ---------TNTKGSYICSCNEGYVLEYDNHTCKAIN 112
T C +GY C+ I+
Sbjct: 73 SSLGAAWGSPCTLCQVDPICGKGYSR-IKGTQCEDID 108
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-14
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 38/241 (15%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G +++ ++ N+I + G + + + P G+ P+ G +++T+ RI
Sbjct: 68 GEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GD--IWFTEMN-GNRIG 123
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-----DCKSLEIKTNVNY 275
RI DG R + K +P+ +TL + ++F +++ + I E K
Sbjct: 124 RITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPA 182
Query: 276 STIFR-------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENGM 326
S L++++ GN KIG+ G + A+
Sbjct: 183 SGPVGITKGNDDALWFVEIIGN----KIGRITTSGEITEFKIPTPNARPHAITAG-AGID 237
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
L++ T+WG N +I R+ + I K P+G+ D ++FA
Sbjct: 238 LWF-----------TEWGAN-KIGRLTSNNIIEEYPIQIKSAEPHGICFD--GETIWFAM 283
Query: 387 S 387
Sbjct: 284 E 284
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 37/285 (12%), Positives = 76/285 (26%), Gaps = 67/285 (23%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G ++ + N I + +G + + + G +++T+ +I
Sbjct: 26 GKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSD-GE--VWFTENA-ANKIG 81
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280
RI G + + P G+T ++F +
Sbjct: 82 RITKKGIIKEYTLPNPDSAPYGITEG-PNGDIWFTEM----------------------- 117
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWL 338
+IG+ DG + + + L + L++
Sbjct: 118 --------NGN---RIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWF--------- 156
Query: 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398
T+ N I RI G I T P G+T ++F +
Sbjct: 157 --TENQNN-AIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEI----------- 201
Query: 399 GTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443
+ I + + A+ L+++ GA
Sbjct: 202 IGNKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGA 245
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 2e-14
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 70 DMNECEQP---------GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
D++EC C +C N G Y CSC GY L+ D H+C+A
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 47/241 (19%), Positives = 91/241 (37%), Gaps = 37/241 (15%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G I++ ++ N+I + G + P G+ + G W T RI
Sbjct: 73 GDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWF--TQLN-GDRIG 128
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI-----DCKSLEIKTNVNY 275
++ DG+ + K +P +TL + ++F +++ + I K E N
Sbjct: 129 KLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNA 187
Query: 276 STIFR-------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLENGM 326
+ L++++ GN KIG+ G + + A+ +N
Sbjct: 188 AAPVGITSGNDGALWFVEIMGN----KIGRITTTGEISEYDIPTPNARPHAITAG-KNSE 242
Query: 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386
+++ T+WG N +I RI D + + + T+ P+G+T V+FA
Sbjct: 243 IWF-----------TEWGAN-QIGRITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFAL 289
Query: 387 S 387
Sbjct: 290 K 290
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 9e-13
Identities = 38/301 (12%), Positives = 92/301 (30%), Gaps = 57/301 (18%)
Query: 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220
G +++ + N+I D++G + + +++ G +++T+ G N +I
Sbjct: 31 GKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-GD--IWFTENGAN-KIG 86
Query: 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280
++ G + P G+T ++F D I ++ +
Sbjct: 87 KLSKKGGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRI----GKLTADGTIYEYDL 141
Query: 281 ----------------KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDL 322
L++ + N IG+ G + +
Sbjct: 142 PNKGSYPAFITLGSDNALWFTENQNN----SIGRITNTGKLEEYPLPTNAAAPVGITSG- 196
Query: 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382
+G L++ + N +I RI G I T P+ +T +
Sbjct: 197 NDGALWF-----------VEIMGN-KIGRITTTGEISEYDIPTPNARPHAITAG-KNSEI 243
Query: 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442
+F + G + I D ++ + + ++G ++++ +
Sbjct: 244 WFTEW-----------GANQIGRITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFALKC 291
Query: 443 A 443
Sbjct: 292 K 292
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 1e-13
Identities = 33/131 (25%), Positives = 43/131 (32%), Gaps = 28/131 (21%)
Query: 5 CVNLTKVCDGKTDCPNG--------ADEGPGC-DLAECKHKFGLC---SNTCHPTPLGAL 52
CVN C C G C D+ EC + + C T
Sbjct: 15 CVN-ATACR----CNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYD 69
Query: 53 CTCPPG--------EILSNDSVTCQDMNECEQ-PGYC--SQMCTNTKGSYICSCNEGYVL 101
C C PG + TCQD++EC C S +C NT GSY C C G+
Sbjct: 70 CVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Query: 102 EYDNHTCKAIN 112
+ +
Sbjct: 130 RHGIPNNQKDT 140
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 23 DEGPGC-DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75
+ C D+ EC C + C T C C PG + Q CE
Sbjct: 88 ESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 64.7 bits (156), Expect = 2e-12
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 28 CDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS-NDSVTCQDMNECEQ---PGYCSQM 83
C C + G C A C+C G + + D C E +++
Sbjct: 94 CQYXNC-GESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEV 152
Query: 84 CTNTKGSYICSCNEGYVLEYDNHTCKAINH 113
C N +G Y C C EG+ + + + C +H
Sbjct: 153 CXNVEGVYXCQCMEGFTFDXEXNVCLGPHH 182
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 51.6 bits (122), Expect = 7e-08
Identities = 20/107 (18%), Positives = 26/107 (24%), Gaps = 3/107 (2%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
+ C + C N C C G L D+
Sbjct: 36 LSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95
Query: 73 E--CEQPGYCSQMCTNTKGSYICSCNEGYVLE-YDNHTCKAINHSAA 116
C + G C + S CSC G V D C +A
Sbjct: 96 YXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETAC 142
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 46.2 bits (108), Expect = 4e-06
Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 40 CSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNEC----------EQPGYCSQMCTNTK 88
C N C C G + +++ TC++ NEC E
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSEN-TCEEXNECXXETLGXACGEFGQCIENPDPAQV 71
Query: 89 GSYICSCNEGYVLEYDNHTCKAIN 112
Y C C EGY L D
Sbjct: 72 NMYXCGCIEGYTLXEDTCVLDVCQ 95
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186 | Back alignment and structure |
|---|
Score = 43.9 bits (102), Expect = 3e-05
Identities = 8/64 (12%), Positives = 12/64 (18%)
Query: 13 DGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
G P C+ + C C C G + C +
Sbjct: 122 IGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPH 181
Query: 73 ECEQ 76
Sbjct: 182 HHHH 185
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 46/244 (18%), Positives = 91/244 (37%), Gaps = 57/244 (23%)
Query: 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGT 205
+GL +GLA D G +Y D + + N+ VL D + P G+ +D G
Sbjct: 64 NGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVDTQ-GA 120
Query: 206 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCK 265
++ D G N R+ ++ ++ + T + P+G+ +D + VY D+
Sbjct: 121 --VYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT-------- 168
Query: 266 SLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLY--EALALDLE 323
N ++ K + +N +L + +A+D E
Sbjct: 169 -----------------------DNN---RVVKLEAESNNQVVLPFTDITAPWGIAVD-E 201
Query: 324 NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 383
G +Y + + N ++ ++ + + + T + P + +D + R VY
Sbjct: 202 AGTVYVT-----------EHNTN-QVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVY 248
Query: 384 FADS 387
AD
Sbjct: 249 VADR 252
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 99 YVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDW 158
YV + N+ + + + + +GL+ +G+A D
Sbjct: 122 YVADRGNNRVVKLAAGSKTQTV----------------------LPFTGLNDPDGVAVD- 158
Query: 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPR 218
G++Y D+ NR+ + N++VL +IT P G+ +D + GT ++ T+ N +
Sbjct: 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GT--VYVTEHNTN-Q 214
Query: 219 IERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257
+ ++ + + + T + P + +D + R VY AD
Sbjct: 215 VVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADR 252
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 7e-08
Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 47/257 (18%)
Query: 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 253
P G+ +D + G ++ T G R+ ++ + + + +Y P GL +D VY
Sbjct: 26 PSGVAVDSA-GN--VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVY 81
Query: 254 FADSKLDFIDCKSLEIKTNVNYSTIFR-----------KLYWIDEGGNGVPLKIGKANMD 302
D + + V +Y D G N ++ K
Sbjct: 82 VTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNN----RVVKLAAG 137
Query: 303 GSNASILVSGQLYE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS 360
++L L + +A+D +G +Y TD N R+ ++ + +N+
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVD-NSGNVYV-----------TDTD-NNRVVKLEAESNNQV 184
Query: 361 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMG 420
+ T I P G+ +D VY + T + +L G
Sbjct: 185 VLPFTDITAPWGIAVD-EAGTVYVTEH-----------NTNQVVKLLAGSTTSTVLPFTG 232
Query: 421 DNGVPALALDLENGMLY 437
N A+A+D + +Y
Sbjct: 233 LNTPLAVAVD-SDRTVY 248
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 18/67 (26%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 43 TCHPTPLGALCTCPPGEILSNDSVTCQDMNECE-QPGYCSQMCTNTKGSYICSCNEGYVL 101
TC C C G C G C+ C G CSC GY L
Sbjct: 27 TCIDGIGSFSCDCRSGWEGRFCQ-REVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL 85
Query: 102 EYDNHTC 108
D C
Sbjct: 86 GDDLLQC 92
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 17 DCPNGADEGPGC----DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72
DC +G EG C C G C++ C C+C PG L +D + C
Sbjct: 38 DCRSGW-EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 96
Query: 73 E--CEQPGYC 80
+ C +P
Sbjct: 97 KFPCGRPWKR 106
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-10
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 67 TCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C N G C Q C + S +CSC GY L + C
Sbjct: 3 LCSLDN-----GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 43
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 7e-07
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
C G C CH +C+C G L+++ C
Sbjct: 3 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-10
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111
C N G C Q C + CSC GYVL D+ +C +
Sbjct: 1 CSLDN-----GGCDQFCREERSEVRCSCAHGYVLGDDSKSCVST 39
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-06
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
C G C C C+C G +L +DS +C
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-09
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 11 VCDGKTDCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
+ D +E D +C+ C CTC G N C
Sbjct: 22 AREVFEDSDKT-NEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN----C 76
Query: 69 Q-DMNEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+ + G C Q C + S +CSC GY L + C
Sbjct: 77 ELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 18 CPNGADEGPGCDLA---ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE- 73
C G EG C+L C G C CH +C+C G L+++ C
Sbjct: 67 CLEGF-EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 125
Query: 74 -CEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C + + + + + G D+ T K +
Sbjct: 126 PCGKQT----LERRKRSVAQATSSSGEA--PDSITWKPYD 159
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 9/101 (8%)
Query: 12 CDGKTDCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69
+ + +E D +C+ L C C C G N C+
Sbjct: 29 REVFENTEKT-NEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKN----CE 83
Query: 70 -DMNECEQPGYCSQMCTNTKGS-YICSCNEGYVLEYDNHTC 108
D + G C Q C S +CSC GY L D +C
Sbjct: 84 LDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-08
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 68 CQDMNECE-QPGYCSQMCTNTKGS-YICSCNEGYVLEYDNHTCKAI 111
D C + G C Q C++ G+ C C+EGY L D +C
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 47
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69 | Back alignment and structure |
|---|
Score = 37.1 bits (86), Expect = 6e-04
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 29 DLAECKHKFGLCSNTCHPTPLG-ALCTCPPGEILSNDSVTCQDMNEC 74
D C ++ G C C C C G L D V+C E
Sbjct: 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 11 VCDGKTDCPNGADEGPGC--DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSV 66
+ D +E D +C+ C N C CTC G +
Sbjct: 22 AREVFEDSDKT-NEFWNKYKDGDQCET--SPCQNQGKCKDGLGEYTCTCLEGF----EGK 74
Query: 67 TCQ-DMNEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C+ + G C Q C + S +CSC GY L + C
Sbjct: 75 NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 39 LCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ-DMNEC--EQPGYCSQMCTNTKGSYIC 93
C + +C + G CTC PG + C+ NEC E+ C C + SY C
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESYTC 67
Query: 94 SCNEGYVLEYDNHTC 108
SC +GY L D+ C
Sbjct: 68 SCAQGYRLGEDHKQC 82
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-07
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 67 TCQDMNECEQPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAI 111
TC N G C Q C N+ +CSC EGY L + +C+
Sbjct: 1 TCNIKN-----GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 41
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 17 DCPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ-DMNE 73
D +C +C +C C P N C+ ++
Sbjct: 32 KDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRN----CETHKDD 87
Query: 74 CE----QPGYCSQMCTNTKGS-YICSCNEGYVLEYDNHTC 108
+ G C Q C++ G+ C C+EGY L D +C
Sbjct: 88 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-06
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 65 SVTCQDMNECEQP--GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
D+NEC CS C N G Y CSC Y L D C
Sbjct: 111 YYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 27 GCDLAECKHKFGL-CSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
D+ EC + CS+ C+ G C+CPP L +D C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 80 CSQMCTNTKGS-YICSCNEGYVLEYDNHTCKAI 111
C Q C++ G+ C C+EGY L D +C
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 4e-06
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 65 SVTCQDMNECEQP----GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
+D++EC+ C C N G + CSC GYVL + TC +
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 9e-06
Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 10/142 (7%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
+C++ VCDG DC NG DE C L + C
Sbjct: 68 QCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCFD--------HCTKRRPEHM 118
Query: 64 DSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
S + D A +H
Sbjct: 119 TLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFA-DHRLTIHPPEED 177
Query: 124 HSILVADLEEKGKDHRAQDIVV 145
LV + + D IV
Sbjct: 178 GLGLVGEFDGYNFDRFVGHIVH 199
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 9e-06
Identities = 31/259 (11%), Positives = 69/259 (26%), Gaps = 46/259 (17%)
Query: 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFW 210
+E LA G I+ + + I +G +I + + G+ G
Sbjct: 34 LENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVEG--KVSGLAFTS-NGDLVATG 89
Query: 211 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270
+ P + + DG+ + + + NG+T + + ADS I
Sbjct: 90 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWL------ 142
Query: 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYS 330
++ ++ + +G L
Sbjct: 143 --IDVVQPSGSIWLEHPMLARSNSESVFPAANG--------------LKRF--------- 177
Query: 331 TLKCTRWLFWTDWGENPRIERIGMD--GSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388
+L+ ++ + + RI +D I + + D +Y A
Sbjct: 178 ----GNFLYVSNTEKM-LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHI 231
Query: 389 LDFIDFCNYDGTGRQQVIL 407
+ + +I
Sbjct: 232 YNSVV--RIAPDRSTTIIA 248
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 23/77 (29%)
Query: 41 SNTCHPTPLGALCT-----------CPPGEILSNDSVTCQDMNECE------QPGYCSQM 83
SN C P GA C+ CP G + C+D++EC
Sbjct: 8 SNPCFP---GAQCSSFPDGSWSCGFCPVG--FLGNGTHCEDLDECALVPDICFSTSKVPR 62
Query: 84 CTNTKGSYIC-SCNEGY 99
C NT+ + C C Y
Sbjct: 63 CVNTQPGFHCLPCPPRY 79
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 4e-05
Identities = 23/145 (15%), Positives = 37/145 (25%), Gaps = 14/145 (9%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSN 63
C++ CDG+ DC +G+DE P C ++ C N
Sbjct: 67 ECIHDLLFCDGEKDCRDGSDEDP----ETCSLNITHVGSSYTGLATWTSC------EDLN 116
Query: 64 DSVTCQDMNECEQPGYCSQMC-TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISN 122
+ + + SY ++ V L
Sbjct: 117 PDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLK 176
Query: 123 RHS---ILVADLEEKGKDHRAQDIV 144
S ++ D DH IV
Sbjct: 177 GQSEGYGVICDFNLGDDDHADCKIV 201
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 42/325 (12%), Positives = 85/325 (26%), Gaps = 88/325 (27%)
Query: 99 YVLEYDNHTCKAINHSAAFLI------ISNRHSILVADLE--------EKGKDHRAQDIV 144
+ +H + + F+ +ILV D K + +
Sbjct: 38 VIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLS 97
Query: 145 VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA----------KDNITQP 194
+ G+ + D L+++ D + +L +++ QP
Sbjct: 98 IDT------------DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145
Query: 195 RGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS---------NRSTIISTKIYWPNGLTL 245
+ ++PS G +F +D N RI + G + S+ + P+ L L
Sbjct: 146 TDVAVEPSTGA--VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLAL 203
Query: 246 DIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305
++ AD + I C +I A+ +
Sbjct: 204 VPHLDQLCVADRENGRIQC--------------------FKTDTKEFVREIKHASFGRNV 243
Query: 306 ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST 365
+I NG Y+ D + + +
Sbjct: 244 FAI----SYIPGFLFA-VNGKPYFG-----------DQE-PVQGFVMNFSSGEIIDVFKP 286
Query: 366 ---KIYWPNGLTLDIATRRVYFADS 387
P+ + VY D+
Sbjct: 287 VRKHFDMPHDIVAS-EDGTVYIGDA 310
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 39/339 (11%), Positives = 82/339 (24%), Gaps = 66/339 (19%)
Query: 85 TNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDI- 143
T G+ + + + C + H+ L G+ H + I
Sbjct: 110 TTFLGTMYDGNTKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLV----GEQHPTRLID 165
Query: 144 --------VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIE----VCDENGTNRIVLAKDNI 191
V SGL V + + + + + N + +++
Sbjct: 166 FEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKG 225
Query: 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI-ISTKIYWPNGLTLDIATR 250
G P G L++ W ++ R + + W + +
Sbjct: 226 QNCNGAETHPING--ELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282
Query: 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI-- 308
Y +I ++++ ++ T +I G G + G A +
Sbjct: 283 YAYIVVVNQHYI------LRSDYDWKTKRLTTPYIVCGQQGAK---DWVDGVGKKARMHA 333
Query: 309 ---LVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII-- 363
+ + Y+ D N I + G +T
Sbjct: 334 PRQGTFVKNPAYKGSS-DEYDFYFC-----------DRE-NHCIRILTPQG-RVTTFAGR 379
Query: 364 ---------------STKIYWPNGLTLDIATRRVYFADS 387
+ P G+ D + D
Sbjct: 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR 418
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-05
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 5 CVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSND 64
V +T CD C+ + G+C C P LG+ C C + +
Sbjct: 426 IVQVTFDCDCACQAQ-AEPNSHRCNNGNGTFECGVCR--CGPGWLGSQCECSEEDYRPSQ 482
Query: 65 SVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
C CSQ G C C+ + C
Sbjct: 483 QDECSPREG---QPVCSQRGECLCGQ--CVCHSSDFGKITGKYC 521
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 72 NEC--EQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNR 123
NEC E+ C C + SY CSC +GY L D+ C + A ++ S +
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 56
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 3e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSNTCHPTP 48
CV +CDG DC +GADE A C + + T
Sbjct: 21 VCVPERWLCDGDKDCADGADE-SIA--AGCLYNSTGSGSGSGSTE 62
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 3e-04
Identities = 54/360 (15%), Positives = 108/360 (30%), Gaps = 102/360 (28%)
Query: 130 DLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRI--EVCDENGTNRIVLA 187
D E ++ +DI+ + ++ + D + + E D I+++
Sbjct: 8 DFETGEHQYQYKDIL---SVFEDAFVDNFDCKDV--QDMPKSILSKEEIDH-----IIMS 57
Query: 188 KDNITQPRGMMLDPSPGTRWLFWT--DWGENPRIERI--GMDGSNRSTIISTKIYWPNGL 243
KD ++ T LFWT E +++ + N ++S
Sbjct: 58 KDAVSG-----------TLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 244 TLD----IATRRVYFADSKLDFIDCKSLEIKTNVN----YSTIFRKLYWIDEGGNGVPLK 295
++ I R + D+++ F K NV+ Y + + L + N V +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQV-F-------AKYNVSRLQPYLKLRQALLELRPAKN-VLID 156
Query: 296 IGKANMDGSNASILVSGQLYEALALDLENGMLYYSTL-KCTR------------------ 336
G + GS + + + +++ L C
Sbjct: 157 -G---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 337 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL-TLD------------------I 377
W +D N ++ RI + ++ +K Y N L L +
Sbjct: 213 WTSRSDHSSNIKL-RIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 378 ATRRVYFADSKL-DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGML 436
TR ++ DF+ + L + T D + + LD L
Sbjct: 271 TTR-----FKQVTDFL-----SAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQDL 318
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 7e-04
Identities = 61/399 (15%), Positives = 115/399 (28%), Gaps = 120/399 (30%)
Query: 100 VLE--YDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYD 157
VL + A N S L+ + R + L H + D L E +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306
Query: 158 WIGGHIYWLDSRLNRI--EVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE 215
+ +LD R + EV TN L+ I + W W +
Sbjct: 307 ----LLKYLDCRPQDLPREVLT---TNPRRLSI--I----AESIRDGL-ATWDNW----K 348
Query: 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI-KTNVN 274
+ +++ +TII + + L+ A R F L + + +
Sbjct: 349 HVNCDKL-------TTIIESSL-----NVLEPAEYRKMF----------DRLSVFPPSAH 386
Query: 275 YSTIFRKLYWIDEGGNGVPLKIGK------ANMDGSNASILVSGQLYEALALDLEN---- 324
TI L W D + V + + K ++I + +Y L + LEN
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYAL 445
Query: 325 --GML-YYSTLKCTRWLFWTDWGENPRIER------IG--MDGSNRSTIIS--TKIYWPN 371
++ +Y+ K + P IG + ++ ++
Sbjct: 446 HRSIVDHYNIPKT-----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497
Query: 372 GLTLDIATRRVYFADSKL---------------DFIDFCNYDGTGRQQVILIDLMVE-FT 415
LD F + K+ Y + + D E
Sbjct: 498 ---LDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFY----KPYICDNDPKYERLV 545
Query: 416 NDLM------GDNGVPA-------LALDLENGMLYYSTE 441
N ++ +N + + +AL E+ ++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 41/277 (14%), Positives = 88/277 (31%), Gaps = 35/277 (12%)
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP--------SPG 204
G + +++ ++ + + D T + + R + P
Sbjct: 93 GATINNTTQTLWFGNTVNSAVTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDA 151
Query: 205 TRWLFWTDWGENPRIERIGMDGSNRSTIISTKI--YWPNGLTLDIATRRVYFA--DSKLD 260
T ++ + G+ I + DG N + + GL LD +R+Y D +L
Sbjct: 152 TNTVYISGIGKESVIWVV--DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELI 209
Query: 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI--LVSGQLYEAL 318
ID +I + ++ ++I+ + + + + + +G + +
Sbjct: 210 TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269
Query: 319 ALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTI--ISTKIYWPNGLTLD 376
A +L+ + T ++ I D + + T + PN L L
Sbjct: 270 AAPESLAVLFNPA---RNEAYVTHRQAG-KVSVI--DAKSYKVVKTFDTPTH-PNSLALS 322
Query: 377 IATRRVYFA---DSKLDFIDFCNYDGTGRQQVILIDL 410
+ +Y + S T VI I L
Sbjct: 323 ADGKTLYVSVKQKSTKQQEA------TQPDDVIRIAL 353
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 4e-04
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CDLAECKHKFGLCSNTCHPTPLG---------ALC 53
C++ VCDG DC N DE P CD + K + L
Sbjct: 66 ECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITA 125
Query: 54 TCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113
+ + + +E E+ G N KG Y + +L + +
Sbjct: 126 SKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYY-NFASRRLILLPTDDHDDHLAV 184
Query: 114 SAAFLIISNRH 124
+F N
Sbjct: 185 VCSFNRGDNER 195
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
Score = 37.0 bits (86), Expect = 4e-04
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
+C+ C+G DC N ADE
Sbjct: 19 KCLPQLLHCNGVDDCGNQADE 39
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 4e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN 42
+C++ VCD DC +G+DE C + C C++
Sbjct: 14 KCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNS 51
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 161 GHIYWLDSRLNRIEVCDENGT-----NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE 215
I D+ +RI++ D+ G + P + + + G + T+
Sbjct: 41 NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV--TERSP 98
Query: 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 258
+I+ G +T + P G+T+D R+ + K
Sbjct: 99 THQIQIYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECK 140
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 7e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPGCDLAEC 33
RC+ ++ CD DC + +DE C C
Sbjct: 16 RCIPISWTCDLDDDCGDRSDESASCAYPTC 45
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 7e-04
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 28 CDLAECKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQP-----GYC 80
C + CS C G C C + + C ++ G
Sbjct: 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVKGRI 60
Query: 81 SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113
+ + + YV+ + AI+
Sbjct: 61 FVGSSQVPVVFENTDLHSYVVMNHGRSYTAIST 93
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 100.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.97 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.96 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.92 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.92 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.92 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.91 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.89 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.84 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.84 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.84 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.83 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.82 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.8 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.8 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.78 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.78 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.77 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.77 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.76 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.74 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.74 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.72 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.69 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.63 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.63 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.63 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.62 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.6 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.58 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.58 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.55 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.55 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.54 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.53 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.52 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.52 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.5 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 99.49 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.49 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.47 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.46 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.45 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.42 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.41 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.41 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.41 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.38 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 99.37 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.36 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.36 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 99.35 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.34 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.33 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.31 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.3 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.3 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.28 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.27 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 99.23 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.21 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.21 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.21 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.2 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.17 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 99.15 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.15 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.11 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.1 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.06 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.06 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 99.05 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.01 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 99.0 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 99.0 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 98.99 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.98 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.98 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.97 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.95 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 98.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.93 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.92 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 98.92 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 98.92 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.89 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.89 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.85 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.84 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.84 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.83 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 98.82 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.81 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.81 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 98.74 | |
| 1dx5_I | 118 | Thrombomodulin; serine proteinase, EGF-like domain | 98.74 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.73 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.73 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.73 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 98.72 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.71 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.69 | |
| 1kli_L | 69 | Factor VIIA; extrinsic coagulation pathway, serine | 98.68 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.68 | |
| 1yo8_A | 634 | Thrombospondin-2; EGF, Ca(2+)-binding domains, lec | 98.66 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.66 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.62 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 98.62 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.6 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.59 | |
| 2jkh_L | 55 | Factor X light chain; plasma, calcium, zymogen, se | 98.57 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.57 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 98.57 | |
| 1uzk_A | 162 | Fibrillin-1; glycoprotein, extra-cellular matrix, | 98.57 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 98.56 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.55 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.52 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.52 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.51 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.51 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.51 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.5 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.45 | |
| 1kig_L | 51 | Factor XA; glycoprotein, serine protease, plasma, | 98.43 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.41 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.38 | |
| 2vj3_A | 135 | Neurogenic locus notch homolog protein 1; transcri | 98.37 | |
| 2bz6_L | 53 | Blood coagulation factor VIIA; serine protease, en | 98.36 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 98.33 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 98.29 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.29 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 98.25 | |
| 2bou_A | 143 | EGF-like module containing mucin-like hormone rece | 98.24 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.23 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.22 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 98.17 | |
| 2wph_E | 59 | Coagulation factor IXA light chain; serine proteas | 98.15 | |
| 3dpr_E | 39 | LDL-receptor class A 3; human rhinovirus, VLDL-rec | 98.13 | |
| 1apq_A | 53 | Complement protease C1R; EGF, calcium binding, ser | 98.12 | |
| 1z1y_A | 186 | Ookinete surface protein PVS25; four EGF-like doma | 98.1 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.07 | |
| 1k7b_A | 47 | Subgroup A ROUS sarcoma virus receptor PG800 and P | 98.06 | |
| 1ajj_A | 37 | LR5, low-density lipoprotein receptor; LDL recepto | 98.05 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 98.04 | |
| 1cr8_A | 42 | Protein (LOW density lipoprotein receptor related | 98.03 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.01 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.99 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.98 | |
| 3a7q_B | 44 | Low-density lipoprotein receptor-related protein; | 97.95 | |
| 1jrf_A | 47 | TVA LDL-A module, subgroup A ROUS sarcoma virus re | 97.93 | |
| 1d2l_A | 45 | Lipoprotein receptor related protein; ligand bindi | 97.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.92 | |
| 2knx_A | 50 | Prolow-density lipoprotein receptor-related prote; | 97.92 | |
| 2jm4_A | 43 | Relaxin receptor 1; LDL-A module, RXFP1 receptor, | 97.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.91 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.89 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.87 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.87 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.85 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 97.85 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.83 | |
| 4d90_A | 143 | EGF-like repeat and discoidin I-like domain-conta | 97.81 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.81 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.79 | |
| 2m0p_A | 52 | Low-density lipoprotein receptor-related protein; | 97.78 | |
| 2kny_A | 80 | LRP-1, linker, APO-E; lipoprotein receptor, ligand | 97.75 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.7 | |
| 1x7a_L | 146 | Coagulation factor IX, light chain; inhibition, bl | 97.69 | |
| 1emn_A | 82 | Fibrillin; extracellular matrix, calcium-binding, | 97.69 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.67 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.65 | |
| 1lmj_A | 86 | Fibrillin 1; EGF, calcium, microfibril, neonatal, | 97.63 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.62 | |
| 2i1p_A | 48 | Low-density lipoprotein receptor-related protein 2 | 97.61 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.59 | |
| 1j8e_A | 44 | Low-density lipoprotein receptor-related protein 1 | 97.59 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.54 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.53 | |
| 2w2n_E | 107 | LDL receptor, low-density lipoprotein receptor; hy | 97.53 | |
| 1aut_L | 114 | Activated protein C; serine proteinase, plasma cal | 97.52 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.5 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.49 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.48 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.47 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.45 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.44 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.43 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 97.43 | |
| 1z6c_A | 87 | Vitamin K-dependent protein S; EGF module, blood c | 97.42 | |
| 3h5c_B | 317 | Vitamin K-dependent protein Z; protein Z-protein Z | 97.39 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.38 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.37 | |
| 2gtl_O | 215 | Extracellular hemoglobin linker L3 subunit; anneli | 97.37 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.36 | |
| 1nfu_B | 195 | Coagulation factor XA, light chain; hydrolase; HET | 97.35 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.34 | |
| 2vh0_B | 134 | Activated factor XA light chain; serine protease, | 97.33 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 97.33 | |
| 2gtl_N | 220 | Extracellular hemoglobin linker L2 subunit; anneli | 97.32 | |
| 3f1s_B | 283 | Vitamin K-dependent protein Z; PZ, ZPI, complex, s | 97.31 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.3 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.3 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.25 | |
| 2w86_A | 147 | Fibrillin-1, fibrillin1; phosphoprotein, EGF-like | 97.23 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.22 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.19 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.18 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.17 | |
| 2fyj_A | 82 | Low-density lipoprotein receptor-related protein 1 | 97.14 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.13 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.12 | |
| 2c4f_L | 142 | Coagulation factor VII precursor; blood coagulatio | 97.1 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 97.09 | |
| 1szb_A | 170 | Mannose binding lectin-associated serine protease- | 97.08 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.05 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.04 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.0 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.97 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 96.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.95 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 96.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.91 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.89 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 96.88 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 96.86 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.86 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 96.85 | |
| 2gtl_M | 217 | Hemoglobin linker chain L1; annelid erythrocruorin | 96.8 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 96.77 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.76 | |
| 2fcw_B | 80 | LDL receptor, low-density lipoprotein receptor; pr | 96.75 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.74 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.73 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.66 | |
| 1gl4_A | 285 | Nidogen-1, entactin; immunoglobulin-like domain, e | 96.65 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.63 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 96.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.58 | |
| 2kl7_A | 71 | Fibulin-4; secreted, calcium, disease mutation, di | 96.57 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.55 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.51 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.49 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.46 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.45 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.4 | |
| 1nzi_A | 159 | Complement C1S component; calcium, innate immunity | 96.36 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.34 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.33 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.33 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.32 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.22 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.19 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.19 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.18 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.17 | |
| 1tpg_A | 91 | T-plasminogen activator F1-G; plasminogen activati | 96.16 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 96.14 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.14 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.06 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.04 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.99 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.93 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 95.87 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 95.83 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.75 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.74 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.65 | |
| 2xrc_A | 565 | Human complement factor I; immune system, hydrolas | 95.6 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 95.58 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 95.57 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 95.56 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 95.47 | |
| 3ojy_A | 554 | Complement component C8 alpha chain; macpf, lipoca | 95.46 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 95.4 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 95.28 | |
| 3ojy_B | 537 | Complement component C8 beta chain; macpf, lipocal | 95.26 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.26 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.15 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 95.13 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 95.12 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 94.86 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 94.8 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 94.77 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 94.72 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 94.69 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.68 | |
| 1edm_B | 39 | Factor IX; epidermal growth factor, EGF, calcium- | 94.66 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 94.66 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.48 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.34 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.28 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.28 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.25 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 94.09 | |
| 1n1i_A | 105 | Merozoite surface protein-1; MSP1, malaria, surfac | 94.01 | |
| 3a0f_A | 763 | Xyloglucanase; beta-propeller, hydrolase; 2.50A {G | 93.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 93.88 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 93.86 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 93.81 | |
| 2k2s_B | 61 | Micronemal protein 6; microneme protein complex, c | 93.63 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 93.58 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 93.53 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 93.45 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 93.45 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 93.39 | |
| 1egf_A | 53 | Epidermal growth factor; NMR {Mus musculus} SCOP: | 93.35 | |
| 1ob1_C | 99 | Major merozoite surface protein; immune system, im | 93.12 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 92.91 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 92.72 | |
| 3u7u_G | 55 | Neuregulin 1; signaling protein, transferase-trans | 92.72 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 92.71 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 92.68 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 92.67 | |
| 2ygq_A | 324 | WIF-1, WNT inhibitory factor 1; signaling protein, | 92.65 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 92.64 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 92.57 | |
| 2gy5_A | 423 | Angiopoietin-1 receptor; ligand-binding domain, tr | 92.55 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 92.45 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 92.44 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 92.43 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 92.35 | |
| 2vj2_A | 169 | Jagged-1; signalling, polymorphism, glycoprotein, | 92.33 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 92.21 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 91.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 91.69 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 91.48 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 91.17 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.07 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 90.92 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 90.69 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 90.45 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 90.44 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 90.29 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 90.04 | |
| 3cfw_A | 164 | L-selectin; EGF, cell adhesion, EGF-like domain, g | 90.01 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 89.94 | |
| 3ca7_A | 52 | Protein spitz; argos, EGF, developmental protein, | 89.26 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 89.26 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 88.88 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 88.69 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 88.57 | |
| 1nt0_A | 286 | MAsp2, mannose-binding protein associated serine p | 88.33 | |
| 1k36_A | 46 | Epiregulin; EGF-like fold, hormone/growth factor c | 87.92 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 87.86 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 87.49 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 87.15 | |
| 3t5o_A | 913 | Complement component C6; macpf, MAC, membrane atta | 86.97 | |
| 4fbr_A | 267 | Lectin, myxobacterial hemagglutinin; beta-barrel, | 86.68 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 86.55 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 86.26 | |
| 3dem_A | 278 | Complement factor MAsp-3; complement system, innat | 85.85 | |
| 1q4g_A | 553 | Prostaglandin G/H synthase 1; cyclooxygenase, non- | 85.83 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 84.18 | |
| 3nt1_A | 587 | Prostaglandin-endoperoxide synthase 2; prostagland | 83.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 82.88 | |
| 3dem_A | 278 | Complement factor MAsp-3; complement system, innat | 82.74 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 82.35 | |
| 1nt0_A | 286 | MAsp2, mannose-binding protein associated serine p | 81.74 | |
| 1g1s_A | 162 | P-selectin; selectin, lectin, EGF, sulphated, SLEX | 81.41 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 81.08 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 80.94 | |
| 1hae_A | 63 | Heregulin-alpha; growth factor; NMR {Homo sapiens} | 80.77 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 80.65 | |
| 1a3p_A | 45 | Epidermal growth factor; disulfide connectivities, | 80.58 | |
| 1nql_B | 53 | Epidermal growth factor; cell surface receptor, ty | 80.35 |
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-54 Score=461.78 Aligned_cols=350 Identities=28% Similarity=0.529 Sum_probs=308.0
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcc
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYC 80 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~-~C~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C 80 (461)
+|+||+..++|++..+|+||+||.. .|+.++|..++..|.+.|.+++++|.|.|++||.+ .++..|++++||..+..|
T Consensus 283 ~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dideC~~~~~C 361 (791)
T 3m0c_C 283 SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTC 361 (791)
T ss_dssp TSCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCCCSSSSSC
T ss_pred CCcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcccCCCCCC
Confidence 5789999999999999999999954 48899999888899999999999999999999988 678999999999877889
Q ss_pred cCceeeccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecC
Q psy17325 81 SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIG 160 (461)
Q Consensus 81 ~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~ 160 (461)
++.|.|+.|+|.|.|++||.+..++++|+++++ .++|++++...|+++++++..+ ..+..++..|.+|++|+..
T Consensus 362 ~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~-~p~Ll~an~~~Ir~i~l~~~~~-----~~l~~~~~~~~gl~~d~~~ 435 (791)
T 3m0c_C 362 SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGS-IAYLFFTNRHEVRKMTLDRSEY-----TSLIPNLRNVVALDTEVAS 435 (791)
T ss_dssp TTTCCBCSSCBCCCCCSSEECCSSCCCCEETTS-CCEEEEECBSSEEEECTTSCCC-----EEEECSCSSEEEEEEETTT
T ss_pred CCeeecCCCCceeecCCCCEeCCCCceeeeccc-ccccccccccceeEeeccCCcc-----eeeecCCCceEEEeecccC
Confidence 999999999999999999999999999999876 4578899999999998876543 3356788999999999999
Q ss_pred CeEEEEeCCCCeEEEEeCCCC----cEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGT----NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTK 236 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~----~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~ 236 (461)
++|||+|...++|++++++|. ...+++...+..|.|||+|+..+ .|||+| ....+|++++++|+.+++++...
T Consensus 436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~--~LY~tD-~~~~~I~v~~ldG~~~~~l~~~~ 512 (791)
T 3m0c_C 436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS--NIYWTD-SVLGTVSVADTKGVKRKTLFREN 512 (791)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT--EEEEEE-TTTTEEEEEETTSSSEEEEEECT
T ss_pred CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC--cEEEEe-cCCCeEEEEeCCCCeEEEEEeCC
Confidence 999999999999999999984 44667777888999999999988 999999 55679999999999999999888
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-- 314 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-- 314 (461)
+..|.|||||+..++|||+|.... ++|++++++|+.+++++...+
T Consensus 513 l~~P~gIaVDp~~g~LYwtD~g~~---------------------------------~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 513 GSKPRAIVVDPVHGFMYWTDWGTP---------------------------------AKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp TCCEEEEEEETTTTEEEEEECSSS---------------------------------CEEEEEETTSCCEEEEECSSCSC
T ss_pred CCCcceEEEecCCCCEEEecCCCC---------------------------------CeEEEEecCCCceEEEEeCCCCC
Confidence 999999999999999999987542 369999999999999998776
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeC--CCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~--~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
|+|||||+.+++|||+|.. .++|++++++|+.+++++.. .+.+|.||++ .+++|||+|+.+++|
T Consensus 560 P~GLavD~~~~~LYwaD~~------------~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I 625 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSK------------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAI 625 (791)
T ss_dssp EEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEE
T ss_pred ceEEEEecCCCeEEEEeCC------------CCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEE
Confidence 9999999999999998887 88999999999999999864 4677888888 678999999999999
Q ss_pred EEEEecCCCCeEEEEEc
Q psy17325 393 DFCNYDGTGRQQVILID 409 (461)
Q Consensus 393 ~~~~~~g~g~~~~~~~~ 409 (461)
.+++.. +|..+.++..
T Consensus 626 ~~~dk~-tG~~~~~l~~ 641 (791)
T 3m0c_C 626 FSANRL-TGSDVNLLAE 641 (791)
T ss_dssp EEEETT-TCCCCEEEEC
T ss_pred EEEeCC-CCcceEEeec
Confidence 999962 6766666543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=415.16 Aligned_cols=324 Identities=30% Similarity=0.540 Sum_probs=239.4
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcccCceeeccCCccccCCCCeeeeCCCCce
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
+++||..+++.|.+.|.+..++|.|.|++||.+..++.+|++++||..++.|++.|.|++++|.|.|++||.+..++++|
T Consensus 2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C 81 (386)
T 3v65_B 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSC 81 (386)
T ss_dssp --------------------------------------------------CCTTEEC-----CCEECCTTEEECTTSSCE
T ss_pred CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcccCcCCCCCCCCeEEECCCceEcCCCCeE
Confidence 35789888899999999889999999999999988899999999998667899999999999999999999999999999
Q ss_pred eeccccceeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec
Q psy17325 109 KAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK 188 (461)
Q Consensus 109 ~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~ 188 (461)
+++++ .+++++++.+.|+++++++... ..+..++..|.++++|+..+.|||+|...++|.+++++|...+.++.
T Consensus 82 ~~~~~-~~~l~~~~~~~I~~i~~~~~~~-----~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 82 KALGP-EPVLLFANRIDIRQVLPHRSEY-----TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp EECSS-CCEEEEECBSCEEEECTTSCCC-----EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CCccc-cceeEeecCccceeeccCCCcE-----EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 98876 7789999999999998876543 34567889999999999999999999999999999999998888888
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccc
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~ 268 (461)
..+..|.|||+|+..+ .|||+|. ...+|++++++|+.+++++...+..|.|||+|+.+++|||+|....
T Consensus 156 ~~~~~p~glavd~~~g--~lY~~d~-~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~-------- 224 (386)
T 3v65_B 156 TGLESPGGLAVDWVHD--KLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-------- 224 (386)
T ss_dssp SSCSCCCCEEEETTTT--EEEEEET-TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS--------
T ss_pred CCCCCccEEEEEeCCC--eEEEEcC-CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC--------
Confidence 7888999999999988 9999994 4579999999999999888888899999999999999999987651
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCC
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGEN 346 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~ 346 (461)
++|++++++|+.+++++...+ |+|||+|+.+++|||+|.. .
T Consensus 225 -------------------------~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~------------~ 267 (386)
T 3v65_B 225 -------------------------PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK------------H 267 (386)
T ss_dssp -------------------------CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT------------T
T ss_pred -------------------------CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC------------C
Confidence 369999999999999887666 9999999999999999888 8
Q ss_pred CceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEc
Q psy17325 347 PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 347 ~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~ 409 (461)
++|++++++|+.+++++...+.+|.||++ .+++|||+|+..++|.+++.. +|....++..
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~-~G~~~~~i~~ 327 (386)
T 3v65_B 268 HVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKF-TGKNQEIIRN 327 (386)
T ss_dssp TEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETT-TCCSCEEEEC
T ss_pred CEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCCCeEEEEECC-CCcceEEEcc
Confidence 89999999999999888778999999999 578999999999999999941 6776665543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=411.05 Aligned_cols=333 Identities=27% Similarity=0.492 Sum_probs=288.7
Q ss_pred CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
+||..+++.|.+.|.+++++|.|.|++||.+ .++..|++++||..+..|++.|.|+.++|.|.|++||.+..++++|++
T Consensus 1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dideC~~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~ 79 (400)
T 3p5b_L 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA 79 (400)
T ss_dssp CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCCCSTTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCC
T ss_pred CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCcccCchhhhccCCCCCccCCCccceeeeccccccccccccceee
Confidence 4788888899999999999999999999998 678999999999877889999999999999999999999999999988
Q ss_pred ccccceeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC----CcEEEE
Q psy17325 111 INHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG----TNRIVL 186 (461)
Q Consensus 111 ~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G----~~~~~l 186 (461)
+++ .+++++++++.|+++++++..+ ..+..++..|.+|++|+..+.|||+|...++|.+++++| .....+
T Consensus 80 ~~~-~~~ll~~~~~~I~~i~l~~~~~-----~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 80 VGS-IAYLFFTNRHEVRKMTLDRSEY-----TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp STT-SCEEEEEETTEEEEECTTSCSC-----EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE
T ss_pred ccc-cceeEEeccceeEEEccCCcce-----eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE
Confidence 754 6789999999999999876543 235678899999999999999999999999999999998 446677
Q ss_pred ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecc
Q psy17325 187 AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKS 266 (461)
Q Consensus 187 ~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~ 266 (461)
+...+..|.|||+|+..+ .|||+| ....+|.+++++|..+++++...+..|.+||||+..++|||+|....
T Consensus 154 ~~~~~~~p~glavD~~~~--~lY~~d-~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~------ 224 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHS--NIYWTD-SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------ 224 (400)
T ss_dssp ECSSCSCEEEEEEETTTT--EEEEEE-TTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS------
T ss_pred EeCCCCCcccEEEEecCC--ceEEEE-CCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC------
Confidence 777788999999999888 999999 55679999999999999999888999999999999999999986532
Q ss_pred cceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecC
Q psy17325 267 LEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWG 344 (461)
Q Consensus 267 ~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~ 344 (461)
++|++++++|+.+++++...+ |+|||+|+.+++|||+|..
T Consensus 225 ---------------------------~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~----------- 266 (400)
T 3p5b_L 225 ---------------------------AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK----------- 266 (400)
T ss_dssp ---------------------------CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-----------
T ss_pred ---------------------------CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC-----------
Confidence 369999999999999988766 9999999999999999888
Q ss_pred CCCceEEEeecCCCeEEEeeC--CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCC
Q psy17325 345 ENPRIERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDN 422 (461)
Q Consensus 345 ~~~~I~~~~~dG~~~~~l~~~--~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~ 422 (461)
..+|++++++|+.+++++.. .+.+|.||++ .+++|||+|+..++|.+++.. +|....++....
T Consensus 267 -~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~-~G~~~~~i~~~~----------- 331 (400)
T 3p5b_L 267 -LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL-TGSDVNLLAENL----------- 331 (400)
T ss_dssp -TTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS-SCCCCEEEECSC-----------
T ss_pred -CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC-CCCceEEEecCC-----------
Confidence 88999999999999998853 5889999999 578999999999999999942 677665554322
Q ss_pred CcceEEEeeeC
Q psy17325 423 GVPALALDLEN 433 (461)
Q Consensus 423 ~~~~~~l~~~~ 433 (461)
..|.+|+++.
T Consensus 332 -~~p~~i~v~~ 341 (400)
T 3p5b_L 332 -LSPEDMVLFH 341 (400)
T ss_dssp -SCEEEEEEES
T ss_pred -CCCceEEEEe
Confidence 2367777764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=432.95 Aligned_cols=348 Identities=29% Similarity=0.532 Sum_probs=299.9
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcc
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGP-GCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYC 80 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~-~C~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C 80 (461)
+++||+..++|++..+|++|+||.. .|+++||..++..|.+.|.+++++|.|.|++||.+ .+++.|++++||..++.|
T Consensus 265 ~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~dideC~~~~~C 343 (699)
T 1n7d_A 265 SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTC 343 (699)
T ss_dssp TSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCCCCCCCSSSSSC
T ss_pred CCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccCCCCcEEeCCCCeEc-CCCCcccCccccCCCCcc
Confidence 5789999999999999999999863 68999999888899999999999999999999988 678999999999877889
Q ss_pred cCceeeccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecC
Q psy17325 81 SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIG 160 (461)
Q Consensus 81 ~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~ 160 (461)
++.|.|+.++|.|.|++||.+..++++|+++. ..+++++++.+.|+++++.+..+. .+..++..|.+|++|+..
T Consensus 344 ~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~-~~~~ll~~~~~~I~~id~~~~~~~-----~~~~~~~~p~gla~d~~~ 417 (699)
T 1n7d_A 344 SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG-SIAYLFFTNRHEVRKMTLDRSEYT-----SLIPNLRNVVALDTEVAS 417 (699)
T ss_dssp TTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCS-SCCCBCCCCTTC-CEECTTSCCEE-----CCSCCCTTCCCCEEETTT
T ss_pred ccccccCCCCeeeeeecccccCCCCCcccccc-cceeEEecCccceEEEeCCCCcce-----eeeccCcceEEEcccccc
Confidence 99999999999999999999998999998874 356788899999999887654432 234567889999999999
Q ss_pred CeEEEEeCCCCeEEEEeCCC----CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecc
Q psy17325 161 GHIYWLDSRLNRIEVCDENG----TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTK 236 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G----~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~ 236 (461)
+.|||+|...++|.+++++| .....++...+..|.|||+|+..+ .|||+| ....+|.+++++|..+++++...
T Consensus 418 ~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g--~LY~tD-~~~~~I~v~d~dg~~~~~l~~~~ 494 (699)
T 1n7d_A 418 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS--NIYWTD-SVLGTVSVADTKGVKRKTLFREQ 494 (699)
T ss_dssp TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS--BCEECC-TTTSCEEEEBSSSCCEEEECCCS
T ss_pred CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC--cEEEEe-ccCCeEEEEecCCCceEEEEeCC
Confidence 99999999999999999997 455556656677899999999888 999999 45679999999999988888877
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-- 314 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-- 314 (461)
+..|.|||||+..++|||+|.... ++|+++.++|+.+++++...+
T Consensus 495 ~~~P~giavDp~~g~ly~td~~~~---------------------------------~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 495 GSKPRAIVVDPVHGFMYWTDWGTP---------------------------------AKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp SCCCCCEECCSSSSCCEECCCSSS---------------------------------CCEEBCCSSSCCCCEESCSSCSS
T ss_pred CCCcceEEEccCCCcEEEcccCCC---------------------------------CeEEEEeCCCCCeeEEEeCCCCC
Confidence 889999999999999999996541 358999999999888876666
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee--CCCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS--TKIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~--~~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
|+|||+|+.+++|||+|.. .++|++++++|+.+++++. ..+.+|.||++| .++|||+|+..++|
T Consensus 542 PnGlavd~~~~~LY~aD~~------------~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~~lywtd~~~~~V 607 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSK------------LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 607 (699)
T ss_dssp CCCEEECTTTCCEEEEETT------------TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--TTEEEEECSTTTCE
T ss_pred ccEEEEeccCCEEEEEecC------------CCeEEEEccCCCceEEEEecCCcCCCceEeEEE--CCEEEEEeCCCCeE
Confidence 9999999999999999887 8899999999999998874 357899999996 56999999999999
Q ss_pred EEEEecCCCCeEEEE
Q psy17325 393 DFCNYDGTGRQQVIL 407 (461)
Q Consensus 393 ~~~~~~g~g~~~~~~ 407 (461)
.+++.. +|....++
T Consensus 608 ~~~d~~-~G~~~~~i 621 (699)
T 1n7d_A 608 FSANRL-TGSDVNLL 621 (699)
T ss_dssp EEEETT-TEEEEECC
T ss_pred EEEEcc-CCCceEEe
Confidence 999973 56654444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=395.37 Aligned_cols=287 Identities=41% Similarity=0.812 Sum_probs=248.1
Q ss_pred ceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 141 ~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
+.++..++..|+|||+||.+++|||+|...++|.+++++|+.+++++...+..|++||+||..| +||||||+..++|+
T Consensus 76 ~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g--~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 76 QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--FMYWTDWGEVPKIE 153 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTT--EEEEEECSSSCEEE
T ss_pred EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCC--eEEEeccCCCCEEE
Confidence 4567778899999999999999999999999999999999999999888889999999999999 99999998789999
Q ss_pred EEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce--eee--------------------------
Q psy17325 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI--KTN-------------------------- 272 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~--~~~-------------------------- 272 (461)
|++|||+.+++++...+.+|+|||+|+.+++|||+|...++|++++.+. ++.
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~ 233 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWST 233 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTT
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCC
Confidence 9999999999999888999999999999999999999999888773310 000
Q ss_pred ----------------e---------------------------------------c----c------------------
Q psy17325 273 ----------------V---------------------------------------N----Y------------------ 275 (461)
Q Consensus 273 ----------------v---------------------------------------~----~------------------ 275 (461)
| . +
T Consensus 234 ~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~ 313 (619)
T 3s94_A 234 HSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK 313 (619)
T ss_dssp CSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBC
T ss_pred CEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccC
Confidence 0 0 0
Q ss_pred -------------------------c-------------ee-----eeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC
Q psy17325 276 -------------------------S-------------TI-----FRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG 312 (461)
Q Consensus 276 -------------------------~-------------~~-----~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~ 312 (461)
. .+ .++|||+|... ++|.+++++|+..++++..
T Consensus 314 ~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~----~~I~r~~~~g~~~~~v~~~ 389 (619)
T 3s94_A 314 DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV----RAIRRSFIDGSGSQFVVTA 389 (619)
T ss_dssp SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEECS
T ss_pred CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCC----CeEEEEEcCCCccEEEEEC
Confidence 0 00 12799999887 5899999999998888877
Q ss_pred Ce--eeeEEEeccCCeEEEeecC--------------------------------ceeeEEEeecCCCCceEEEeecCCC
Q psy17325 313 QL--YEALALDLENGMLYYSTLK--------------------------------CTRWLFWTDWGENPRIERIGMDGSN 358 (461)
Q Consensus 313 ~~--p~~iavd~~~~~lY~t~~~--------------------------------~~~~l~~~d~~~~~~I~~~~~dG~~ 358 (461)
.+ |.|||+|+.+++|||||.. ..++|||+||+..++|+|++|||+.
T Consensus 390 ~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~ 469 (619)
T 3s94_A 390 QIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD 469 (619)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc
Confidence 66 9999999999999999975 1479999999998999999999999
Q ss_pred eEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEE
Q psy17325 359 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYY 438 (461)
Q Consensus 359 ~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYw 438 (461)
+++++...+.+|+|||+|+.+++|||+|++.++|++++++ |..++++... .+ ..|++|++++++|||
T Consensus 470 ~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~--~l---------~~P~glav~~~~ly~ 536 (619)
T 3s94_A 470 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD--GTGRRVLVED--KI---------PHIFGFTLLGDYVYW 536 (619)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS--SCCCEEEEEC--CC---------CSSCCEEEETTEEEE
T ss_pred cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC--CCceEEEecc--CC---------CCcEEEEEECCEEEE
Confidence 9999977899999999999999999999999999999995 5544444331 12 347899999999999
Q ss_pred EeCCCcee
Q psy17325 439 STEGAEFL 446 (461)
Q Consensus 439 td~~~~~i 446 (461)
||+.++.|
T Consensus 537 tD~~~~~I 544 (619)
T 3s94_A 537 TDWQRRSI 544 (619)
T ss_dssp ECTTSSCE
T ss_pred eecCCCeE
Confidence 99999877
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=393.99 Aligned_cols=286 Identities=32% Similarity=0.638 Sum_probs=243.8
Q ss_pred ceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 141 QDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 141 ~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
+.++..++..|+|||+||.+++|||+|...++|.+++++|+.+++++...+.+|++||+||..| +||||||+..++|+
T Consensus 72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G--~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEG--FMYWTEWGGKPKID 149 (628)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTT--EEEEEECSSSCEEE
T ss_pred EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCC--eEEEeCCCCCCEEE
Confidence 4566778889999999999999999999999999999999999999888889999999999999 99999998789999
Q ss_pred EEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce--eee--------------------------
Q psy17325 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI--KTN-------------------------- 272 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~--~~~-------------------------- 272 (461)
|++|||+.+++++. .+.+|+|||+|+.+++|||+|...+.|++++++. ++.
T Consensus 150 r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~ 228 (628)
T 4a0p_A 150 RAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRR 228 (628)
T ss_dssp EEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTT
T ss_pred EEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCC
Confidence 99999999988875 6899999999999999999999998888774210 000
Q ss_pred ---------------e--------------------------------------c-c-----------------------
Q psy17325 273 ---------------V--------------------------------------N-Y----------------------- 275 (461)
Q Consensus 273 ---------------v--------------------------------------~-~----------------------- 275 (461)
| . .
T Consensus 229 ~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~ 308 (628)
T 4a0p_A 229 SIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPT 308 (628)
T ss_dssp EEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCS
T ss_pred EEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcccc
Confidence 0 0 0
Q ss_pred --------c--------------------------ee-----eeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC----
Q psy17325 276 --------S--------------------------TI-----FRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG---- 312 (461)
Q Consensus 276 --------~--------------------------~~-----~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~---- 312 (461)
. .+ .+.|||+|... ++|.+++++|+..+.++..
T Consensus 309 ~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~----~~I~r~~~~g~~~~~v~~~~~~~ 384 (628)
T 4a0p_A 309 TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ----NMIRKAQEDGSQGFTVVVSSVPS 384 (628)
T ss_dssp SEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTT----TEEEEEETTSCSCEEEEC-----
T ss_pred ceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCc----ceEEEEEcCCCCceEEEEccccc
Confidence 0 00 12799999987 5899999999987666643
Q ss_pred --Ce--eeeEEEeccCCeEEEeecC--------------------------------ceeeEEEeecCCCC-ceEEEeec
Q psy17325 313 --QL--YEALALDLENGMLYYSTLK--------------------------------CTRWLFWTDWGENP-RIERIGMD 355 (461)
Q Consensus 313 --~~--p~~iavd~~~~~lY~t~~~--------------------------------~~~~l~~~d~~~~~-~I~~~~~d 355 (461)
.+ |.|||+|+.+++|||||.. ..++|||+||+..+ +|+|++||
T Consensus 385 ~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d 464 (628)
T 4a0p_A 385 QNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD 464 (628)
T ss_dssp ---CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred ccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence 33 9999999999999999875 15799999999876 99999999
Q ss_pred CCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCE
Q psy17325 356 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGM 435 (461)
Q Consensus 356 G~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (461)
|+++++++...+.+|+||++|+.+++|||+|++.++|+++++ +|..++++... .+ ..|++|++++++
T Consensus 465 G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~--dG~~r~~~~~~--~~---------~~P~glav~~~~ 531 (628)
T 4a0p_A 465 GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL--SGANRIVLEDS--NI---------LQPVGLTVFENW 531 (628)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCEEEECS--SC---------SCEEEEEEETTE
T ss_pred CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC--CCCceEEEEcC--CC---------CCcEEEEEECCE
Confidence 999999998899999999999999999999999999999999 56666665531 12 348999999999
Q ss_pred EEEEeCCCcee
Q psy17325 436 LYYSTEGAEFL 446 (461)
Q Consensus 436 lYwtd~~~~~i 446 (461)
|||||+.++.|
T Consensus 532 ly~tD~~~~~i 542 (628)
T 4a0p_A 532 LYWIDKQQQMI 542 (628)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCeE
Confidence 99999999877
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=405.20 Aligned_cols=375 Identities=24% Similarity=0.493 Sum_probs=234.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC-C-------------ceeCCCCceE------------eC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN-T-------------CHPTPLGALC------------TC 55 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~~~~C~~~~~~C~~-~-------------C~~~~~~~~C------------~C 55 (461)
+++||+.+|+|||..||.|++|| ..|...+|.++.+.|.+ . |....++..| .|
T Consensus 203 ~g~Ci~~~~~CDg~~dC~dgsDE-~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C 281 (791)
T 3m0c_C 203 SGECIHSSWRCDGGPDCKDKSDE-ENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC 281 (791)
T ss_dssp -----------------------------------------------------------------------CCSTTCCCC
T ss_pred CCceeccccccCCCCCCCCCCCC-CCccccccCCCcceecCCceEecceecCChhccccccccCcccccccccCCCcccc
Confidence 57899999999999999999999 56755556555544432 1 3222222222 12
Q ss_pred CCCCee-----cCCCCcee----------cCcceec-CCcccCceeeccCCccccCCCCeeeeCCCCceeeccccceeEE
Q psy17325 56 PPGEIL-----SNDSVTCQ----------DMNECEQ-PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLI 119 (461)
Q Consensus 56 ~~G~~l-----~~~~~~C~----------d~~eC~~-~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~ 119 (461)
..|.-+ ......|. +++||.. ++.|++.|.+++++|.|.|++||.+ .+++.|.++++|...-
T Consensus 282 ~~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dideC~~~~- 359 (791)
T 3m0c_C 282 HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPD- 359 (791)
T ss_dssp TTSCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCCCSSSS-
T ss_pred CCCcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcccCCCC-
Confidence 233211 11112232 2466753 4579999999999999999999998 5789999999985211
Q ss_pred EeccccceeecccccCcccc-cceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEE
Q psy17325 120 ISNRHSILVADLEEKGKDHR-AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMM 198 (461)
Q Consensus 120 ~~~~~~I~~~~l~~~~~~~s-~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 198 (461)
...+++ .+..+ .+... +..... .-....-.+++. ...|++++. ..|.++++++.....++. .+..|.+|+
T Consensus 360 --~C~~~C-~n~~g-sy~C~C~~Gy~l-~~~~~~C~~~~~-~p~Ll~an~--~~Ir~i~l~~~~~~~l~~-~~~~~~gl~ 430 (791)
T 3m0c_C 360 --TCSQLC-VNLEG-GYKCQCEEGFQL-DPHTKACKAVGS-IAYLFFTNR--HEVRKMTLDRSEYTSLIP-NLRNVVALD 430 (791)
T ss_dssp --SCTTTC-CBCSS-CBCCCCCSSEEC-CSSCCCCEETTS-CCEEEEECB--SSEEEECTTSCCCEEEEC-SCSSEEEEE
T ss_pred --CCCCee-ecCCC-CceeecCCCCEe-CCCCceeeeccc-ccccccccc--cceeEeeccCCcceeeec-CCCceEEEe
Confidence 111121 11111 11110 000000 000111123332 235666654 679999999887766654 568899999
Q ss_pred EcCCCCceEEEEeecCCCCcEEEEecCCC----CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeec
Q psy17325 199 LDPSPGTRWLFWTDWGENPRIERIGMDGS----NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN 274 (461)
Q Consensus 199 ~d~~~g~~~ly~td~~~~~~I~~~~~dG~----~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~ 274 (461)
+|+..+ .|||+| ..+.+|++++++|. ..+.++...+..|.||||||.+++|||+|...
T Consensus 431 ~d~~~~--~lY~sD-~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~--------------- 492 (791)
T 3m0c_C 431 TEVASN--RIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--------------- 492 (791)
T ss_dssp EETTTT--EEEEEE-TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTT---------------
T ss_pred ecccCC--eeEEee-ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCC---------------
Confidence 999988 999999 45679999999984 45677777899999999999999999999887
Q ss_pred cceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 275 YSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 275 ~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
++|++++++|+.+++++...+ |++|||||..|+|| |+||+..++|+++
T Consensus 493 -------------------~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LY-----------wtD~g~~~~I~~~ 542 (791)
T 3m0c_C 493 -------------------GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY-----------WTDWGTPAKIKKG 542 (791)
T ss_dssp -------------------TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE-----------EEECSSSCEEEEE
T ss_pred -------------------CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEE-----------EecCCCCCeEEEE
Confidence 468999999999999988666 99999999888655 5566666899999
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE 432 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 432 (461)
+|+|+.+++++...+.+|+|||||+.+++|||+|++.++|+++++ +|..+.++......+ +.|++|+++
T Consensus 543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~--dG~~~~~v~~~~~~l---------~~P~glav~ 611 (791)
T 3m0c_C 543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV--NGGNRKTILEDEKRL---------AHPFSLAVF 611 (791)
T ss_dssp ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCEEEEECTTTT---------SSEEEEEEE
T ss_pred ecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec--CCCceEEEecCCCcc---------CCCCEEEEe
Confidence 999999999998899999999999999999999999999999999 566555555432222 358999999
Q ss_pred CCEEEEEeCCCceee
Q psy17325 433 NGMLYYSTEGAEFLK 447 (461)
Q Consensus 433 ~~~lYwtd~~~~~i~ 447 (461)
+++|||||++++.|.
T Consensus 612 ~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 612 EDKVFWTDIINEAIF 626 (791)
T ss_dssp TTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCEEE
Confidence 999999999998883
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=353.90 Aligned_cols=282 Identities=29% Similarity=0.528 Sum_probs=240.7
Q ss_pred CcceecCCcccCceeeccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEcCccc
Q psy17325 71 MNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDL 150 (461)
Q Consensus 71 ~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~ 150 (461)
++||..++.|+|.|.|++|+|+|.|++||.|..++++|++.++ .++|++++.+.|+++++++... ..+..++..
T Consensus 1 i~ec~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~-----~~~~~~~~~ 74 (349)
T 3v64_C 1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPVLLFANRIDIRQVLPHRSEY-----TLLLNNLEN 74 (349)
T ss_dssp --------CCSSEECCC---CCEECCTTEEECTTSSCEEESSS-CCEEEEECBSCEEEECTTSCCE-----EEEECSCSC
T ss_pred CcccCCCCCCcCeeecCCCCeEEECCCCccCCCCCCccccccc-CceeEeecccceEEEeCCCCee-----EEeecCCCc
Confidence 4788867789999999999999999999999999999998776 7889999999999998876543 345678889
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
|.++++|+..+.|||+|...++|.+++++|...+.++...+..|.|||+|+..+ .|||+| ....+|++++++|+.++
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g--~ly~~d-~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD--KLYWTD-SGTSRIEVANLDGAHRK 151 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT--EEEEEE-TTTTEEEEEETTSCSCE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC--eEEEEc-CCCCeEEEEcCCCCceE
Confidence 999999999999999999999999999999988888877788999999999988 999999 45579999999999998
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
+++...+..|++||+|+.++.|||+|.... ++|++++++|+.+++++
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~---------------------------------~~I~r~~~dG~~~~~~~ 198 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNT---------------------------------PRIEASSMDGSGRRIIA 198 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSS---------------------------------CEEEEEETTSCSCEESC
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCC---------------------------------CEEEEEeCCCCCcEEEE
Confidence 888888899999999999999999997651 36899999999999888
Q ss_pred eCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 311 SGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 311 ~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
...+ |+||++|+.+++|||+|.. .++|++++++|+.+++++...+.+|.||++ .+++|||+|+.
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~------------~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~ 264 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAK------------HHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWH 264 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETT
T ss_pred ECCCCCcceEEEeCCCCEEEEEECC------------CCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCC
Confidence 7666 9999999999999998887 889999999999999888778999999999 57899999999
Q ss_pred CCeEEEEEecCCCCeEEEEEc
Q psy17325 389 LDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 389 ~~~I~~~~~~g~g~~~~~~~~ 409 (461)
.++|.+++.. +|....++..
T Consensus 265 ~~~V~~~~~~-~G~~~~~i~~ 284 (349)
T 3v64_C 265 TKSINSANKF-TGKNQEIIRN 284 (349)
T ss_dssp TTEEEEEETT-TCCSCEEEEC
T ss_pred CCeEEEEEcc-CCCccEEecc
Confidence 9999999941 6766555543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=380.40 Aligned_cols=372 Identities=24% Similarity=0.479 Sum_probs=262.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC-CceeC-------------CC--------------CceE
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCSN-TCHPT-------------PL--------------GALC 53 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~~~~C~~~~~~C~~-~C~~~-------------~~--------------~~~C 53 (461)
+++||+.+|+|||..||.||+|| ..|...+|...++.|.+ .|++. .. .+.|
T Consensus 185 ~g~Ci~~~~~CDg~~dC~dgsDE-~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C 263 (699)
T 1n7d_A 185 SGECIHSSWRCDGGPDCKDKSDE-ENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC 263 (699)
T ss_dssp SSCCCSTTCTTSSSCCSTTSCSS-CSCCCCCCCSSEEESSSSCEEETTCCSSSCCCSSSSCSSSSTTCCCCCCSTTCCCC
T ss_pred CCceEechhccCCCCCCCCCccc-ccCCCcccCCCcEecCCCceeeeecccCCCCCCCCCCccCCCCCCCcccCCCceec
Confidence 57899999999999999999999 57866667665555532 23221 11 1111
Q ss_pred ---eCCCCCeecCCCCcee----------cCcceec-CCcccCceeeccCCccccCCCCeeeeCCCCceeeccccceeEE
Q psy17325 54 ---TCPPGEILSNDSVTCQ----------DMNECEQ-PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLI 119 (461)
Q Consensus 54 ---~C~~G~~l~~~~~~C~----------d~~eC~~-~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~ 119 (461)
.|.+..........|. +++||.. ++.|++.|.+++++|.|.|++||.+ .+++.|.++++|.....
T Consensus 264 ~~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~dideC~~~~~ 342 (699)
T 1n7d_A 264 HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDT 342 (699)
T ss_dssp TTSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCCCCCCCSSSSS
T ss_pred CCCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccCCCCcEEeCCCCeEc-CCCCcccCccccCCCCc
Confidence 1111111111122232 4677863 4579999999999999999999998 57889999998862110
Q ss_pred EeccccceeecccccCcccccceEEEcCcc----ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCce
Q psy17325 120 ISNRHSILVADLEEKGKDHRAQDIVVSGLD----LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPR 195 (461)
Q Consensus 120 ~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~----~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~ 195 (461)
..+++. +..+ ++..+ ...|+. ...-.+++ ....|++++ .+.|.++++++.....++. .+..|.
T Consensus 343 ---C~~~C~-n~~g-~y~C~----C~~G~~~~~~~~~C~~~~-~~~~ll~~~--~~~I~~id~~~~~~~~~~~-~~~~p~ 409 (699)
T 1n7d_A 343 ---CSQLCV-NLEG-GYKCQ----CEEGFQLDPHTKACKAVG-SIAYLFFTN--RHEVRKMTLDRSEYTSLIP-NLRNVV 409 (699)
T ss_dssp ---CTTTCC-BCSS-CBCCC----CCSSCBCCSSCCCCBCCS-SCCCBCCCC--TTC-CEECTTSCCEECCSC-CCTTCC
T ss_pred ---cccccc-cCCC-Ceeee----eecccccCCCCCcccccc-cceeEEecC--ccceEEEeCCCCcceeeec-cCcceE
Confidence 111211 1111 11100 001110 00011121 123455544 3689999999887665554 457899
Q ss_pred eEEEcCCCCceEEEEeecCCCCcEEEEecCC----CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceee
Q psy17325 196 GMMLDPSPGTRWLFWTDWGENPRIERIGMDG----SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271 (461)
Q Consensus 196 ~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG----~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~ 271 (461)
+|++|+..+ .|||+| ....+|++++++| +....++...+..|.|||||+.+++|||+|...
T Consensus 410 gla~d~~~~--~Ly~sD-~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~------------ 474 (699)
T 1n7d_A 410 ALDTEVASN--RIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL------------ 474 (699)
T ss_dssp CCEEETTTT--EEEECC-TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTT------------
T ss_pred EEccccccC--eEEEEe-cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccC------------
Confidence 999999988 999999 4567999999998 555556666678899999999999999999876
Q ss_pred eeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 272 ~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
++|.+++++|..+++++...+ |++|||||.+++|||| ||+..++|
T Consensus 475 ----------------------~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~t-----------d~~~~~~I 521 (699)
T 1n7d_A 475 ----------------------GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWT-----------DWGTPAKI 521 (699)
T ss_dssp ----------------------SCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEEC-----------CCSSSCCE
T ss_pred ----------------------CeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEc-----------ccCCCCeE
Confidence 458899999999888887655 9999999988866655 55555899
Q ss_pred EEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEE
Q psy17325 350 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALAL 429 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 429 (461)
++++|+|+.+++++...+.+|+|||||+.+++|||+|+..++|+++++ +|..++++......+ ..|++|
T Consensus 522 ~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~--dG~~~~~~~~~~~~~---------~~P~gl 590 (699)
T 1n7d_A 522 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV--NGGNRKTILEDEKRL---------AHPFSL 590 (699)
T ss_dssp EBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS--SSSCCEEECCCSSSC---------SSCCCC
T ss_pred EEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc--CCCceEEEEecCCcC---------CCceEe
Confidence 999999999999987889999999999999999999999999999999 566555554422222 347899
Q ss_pred eeeCCEEEEEeCCCceee
Q psy17325 430 DLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 430 ~~~~~~lYwtd~~~~~i~ 447 (461)
++++++|||||+++++|.
T Consensus 591 avd~~~lywtd~~~~~V~ 608 (699)
T 1n7d_A 591 AVFEDKVFWTDIINEAIF 608 (699)
T ss_dssp EEETTEEEEECSTTTCEE
T ss_pred EEECCEEEEEeCCCCeEE
Confidence 999999999999998873
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=335.83 Aligned_cols=303 Identities=24% Similarity=0.466 Sum_probs=231.5
Q ss_pred ccee-cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEcCcc-
Q psy17325 72 NECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLD- 149 (461)
Q Consensus 72 ~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~- 149 (461)
+||. .+..|++.|.+++++|.|.|++||.+ .+++.|.++++|...- ...+.+. +..+ .+... ...|+.
T Consensus 1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dideC~~~~---~C~~~C~-n~~g-~~~C~----C~~g~~~ 70 (400)
T 3p5b_L 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPD---TCSQLCV-NLEG-GYKCQ----CEEGFQL 70 (400)
T ss_dssp CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCCCSTTS---SCSSCCB-CCSS-SCBCC----CCTTCCC
T ss_pred CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCcccCchhhhccC---CCCCccC-CCcc-ceeee----ccccccc
Confidence 4676 34578999999999999999999998 5788999999986211 1111111 1111 11110 001110
Q ss_pred ---ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 150 ---LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 150 ---~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
.-.-.+++ ....|++++. +.|.++++++...+.++. .+.+|.+|++|+..+ .|||+| ..+.+|++++++|
T Consensus 71 ~~~~~~C~~~~-~~~~ll~~~~--~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~--~lywsD-~~~~~I~~~~~~g 143 (400)
T 3p5b_L 71 DPHTKACKAVG-SIAYLFFTNR--HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN--RIYWSD-LSQRMICSTQLDR 143 (400)
T ss_dssp CTTTSSCCCST-TSCEEEEEET--TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTT--EEEEEE-TTTTEEEEEEC--
T ss_pred cccccceeecc-ccceeEEecc--ceeEEEccCCcceeEecc-ccCcceEEeeeeccC--ceEEEe-cCCCeEEEEEccc
Confidence 00011121 2345666665 799999999988777664 568899999999988 999999 4567999999998
Q ss_pred ----CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 227 ----SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 227 ----~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
+..+.++...+..|.|||||+.+++|||+|... ++|.+++++
T Consensus 144 ~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~----------------------------------~~I~~~~~~ 189 (400)
T 3p5b_L 144 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL----------------------------------GTVSVADTK 189 (400)
T ss_dssp ----CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------------------TEEEEECTT
T ss_pred CCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC----------------------------------CeEEEEeCC
Confidence 456777777889999999999999999999887 468899999
Q ss_pred CCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC
Q psy17325 303 GSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 380 (461)
Q Consensus 303 g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~ 380 (461)
|+.+++++...+ |++|||||.+|+|| |+||+.+++|++++|||+.+++++...+.+|+|||+|+.++
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly-----------~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMY-----------WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 258 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEE-----------EEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEE-----------EEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC
Confidence 999999988666 99999999888555 55677678999999999999999988899999999999999
Q ss_pred eEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 381 RVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
+|||+|+..++|+++++ +|..+.++......+ ..|++|+++++.|||||++++.|.
T Consensus 259 ~lY~aD~~~~~I~~~d~--dG~~~~~~~~~~~~l---------~~P~gl~v~~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDV--NGGNRKTILEDEKRL---------AHPFSLAVFEDKVFWTDIINEAIF 314 (400)
T ss_dssp EEEEEETTTTEEEEEET--TSCCCEEEEECSSTT---------SSEEEEEEETTEEEEEESSSCSEE
T ss_pred EEEEEECCCCEEEEEeC--CCCccEEEEeCCCCC---------CCCEEEEEeCCEEEEecCCCCeEE
Confidence 99999999999999999 566555554432222 358999999999999999998773
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=330.65 Aligned_cols=304 Identities=29% Similarity=0.503 Sum_probs=194.3
Q ss_pred cCccee-cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEcCc
Q psy17325 70 DMNECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGL 148 (461)
Q Consensus 70 d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~ 148 (461)
+++||. .+..|++.|.+..++|.|.|++||.|..+++.|.++++|...- ...+.+ .+..+ .+.. ....|+
T Consensus 2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~---~C~~~C-~~~~g-~~~C----~C~~g~ 72 (386)
T 3v65_B 2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEG---YCSQGC-TNSEG-AFQC----WCEAGY 72 (386)
T ss_dssp -----------------------------------------------------CCTTEE-C------CCE----ECCTTE
T ss_pred CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeCCcC---cccCcC-CCCCC-CCeE----EECCCc
Confidence 678997 4568999999999999999999999998999999999885211 111111 11111 1110 001111
Q ss_pred c----ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 149 D----LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 149 ~----~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
. ...-.+.+. ...|++++. +.|.+++++|...+.++. .+..|.+|++|+..+ .|||+| ....+|+|+++
T Consensus 73 ~l~~d~~~C~~~~~-~~~l~~~~~--~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~--~ly~~D-~~~~~I~r~~~ 145 (386)
T 3v65_B 73 ELRPDRRSCKALGP-EPVLLFANR--IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRE--LVFWSD-VTLDRILRANL 145 (386)
T ss_dssp EECTTSSCEEECSS-CCEEEEECB--SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTT--EEEEEE-TTTTEEEEEET
T ss_pred eEcCCCCeECCccc-cceeEeecC--ccceeeccCCCcEEEEec-CCCccEEEEEecCCC--eEEEEe-CCCCcEEEEec
Confidence 1 111123332 456677655 689999999987766664 567899999999988 999999 45679999999
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
+|+..+.++..++..|.|||+|+.+++|||+|... ++|.+++++|+
T Consensus 146 ~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~----------------------------------~~I~~~~~dg~ 191 (386)
T 3v65_B 146 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT----------------------------------SRIEVANLDGA 191 (386)
T ss_dssp TSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT----------------------------------TEEEECBTTSC
T ss_pred CCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC----------------------------------CeEEEEeCCCC
Confidence 99988888888888999999999999999999877 45889999999
Q ss_pred ceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 305 NASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 305 ~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
.+++++...+ |++|++||.++.|||+ ||+..++|+|+++||+.+++++...+.+|+|||+|+.+++|
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~g~ly~t-----------d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPMEGTIYWT-----------DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEE-----------ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEE
T ss_pred ceEEeecCCCCCCcEEEEEcCCCeEEEe-----------ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEE
Confidence 9988887766 9999999998876665 45545899999999999999988889999999999999999
Q ss_pred EEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 383 YFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 383 y~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
||+|+..++|++++++ |..+.++.... + ..|.+|+++++.|||||++++.|+
T Consensus 261 Y~aD~~~~~I~~~d~d--G~~~~~~~~~~--~---------~~P~giav~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 261 YWVDAKHHVIERANLD--GSHRKAVISQG--L---------PHPFAITVFEDSLYWTDWHTKSIN 312 (386)
T ss_dssp EEEETTTTEEEEECTT--SCSCEEEECSS--C---------SSEEEEEEETTEEEEEETTTTEEE
T ss_pred EEEECCCCEEEEEeCC--CCeeEEEEECC--C---------CCceEEEEECCEEEEeeCCCCeEE
Confidence 9999999999999994 55444443321 1 348899999999999999998873
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=343.20 Aligned_cols=284 Identities=27% Similarity=0.481 Sum_probs=247.5
Q ss_pred cCccee-cCCcccCceeecc--CCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEc
Q psy17325 70 DMNECE-QPGYCSQMCTNTK--GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVS 146 (461)
Q Consensus 70 d~~eC~-~~~~C~~~C~~~~--g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~ 146 (461)
..++|. .++.|+|.|...+ ++|.|.|+.||.|..++++|.+. ..++|+++.+..|++++++...+.. ..+...
T Consensus 271 ~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~--~~~~Ll~~~~~~i~~i~l~~~~~~~--~~~~~~ 346 (619)
T 3s94_A 271 ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG--ATELLLLARRTDLRRISLDTPDFTD--IVLQLE 346 (619)
T ss_dssp CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSS--CSEEEEEEESSCEEEEESSSTTCCC--EECCCS
T ss_pred ccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCC--CceEEEEEcccceEEEecCCCccce--eEEecc
Confidence 357886 4678999999887 47999999999999999999763 3689999999999999887654321 122346
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
++..|.+|++|+.+++|||+|...++|.+++++|+..++++...+..|.|||+|+..+ .|||+| ....+|++++++|
T Consensus 347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~--~lY~tD-~~~~~I~v~~~~G 423 (619)
T 3s94_A 347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR--NLYWTD-TGTDRIEVTRLNG 423 (619)
T ss_dssp CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT--EEEEEE-TTTTEEEEEETTS
T ss_pred ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC--cEEEEe-CCCCcEEEEeCCC
Confidence 7889999999999999999999999999999999988888888888999999999988 999999 5678999999999
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
+.+++++...+..|.+||+|+..+.|||+|.... .+|+++.+||+.+
T Consensus 424 ~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~---------------------------------~~I~r~~~dG~~~ 470 (619)
T 3s94_A 424 TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI---------------------------------PKIERAALDGSDR 470 (619)
T ss_dssp CSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS---------------------------------CEEEEEETTSCSC
T ss_pred CeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC---------------------------------CEEEEEccCCCcc
Confidence 9999998888999999999999999999987542 4699999999999
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
++++...+ |+|||+|+.+++|||+|.. .++|++++++|+.+++++...+.+|.|||+ .+++|||
T Consensus 471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~------------~~~I~~~~~dG~~~~~~~~~~l~~P~glav--~~~~ly~ 536 (619)
T 3s94_A 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAK------------TDKIEVMNTDGTGRRVLVEDKIPHIFGFTL--LGDYVYW 536 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEEECCCCSSCCEEE--ETTEEEE
T ss_pred EEEEeCCCCCCeeeEEcccCCEEEEEECC------------CCEEEEEecCCCceEEEeccCCCCcEEEEE--ECCEEEE
Confidence 99887666 9999999999999999988 889999999999999998788999999999 4679999
Q ss_pred EcCCCCeEEEEEecCCCCeEEEEEc
Q psy17325 385 ADSKLDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~~~~~~~ 409 (461)
+|+..++|.+++.. +| .+.++..
T Consensus 537 tD~~~~~I~~~~k~-~g-~~~~~~~ 559 (619)
T 3s94_A 537 TDWQRRSIERVHKR-SA-EREVIID 559 (619)
T ss_dssp ECTTSSCEEEEESS-SC-CEEEEEC
T ss_pred eecCCCeEEEEEcC-CC-ceEEEec
Confidence 99999999999994 56 4455554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=345.36 Aligned_cols=286 Identities=26% Similarity=0.470 Sum_probs=246.5
Q ss_pred cCccee-cCCcccCceeecc-CCccccCCCCeeeeCCCCceeeccccceeEEEeccccceeecccccCcccccceEEEcC
Q psy17325 70 DMNECE-QPGYCSQMCTNTK-GSYICSCNEGYVLEYDNHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVSG 147 (461)
Q Consensus 70 d~~eC~-~~~~C~~~C~~~~-g~~~C~C~~g~~l~~~~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g 147 (461)
.+++|. .++.|+|.|.+.+ ++|.|.|++||.|..++++|.+. ..+|+++.+..|+++.++..... ...+...+
T Consensus 264 ~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~---~~~Ll~s~~~~i~~i~l~~~~~~--~~~l~~~~ 338 (628)
T 4a0p_A 264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAP---TTFLLFSQKSAINRMVIDEQQSP--DIILPIHS 338 (628)
T ss_dssp CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECC---SSEEEEEETTEEEEECCCTTCCC--CEECCCTT
T ss_pred cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccc---cceeeeeccceEEEEecccccCc--eEEEEehh
Confidence 468997 4678999999999 99999999999999999999763 56899999999998877643321 11223567
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC------CCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD------NITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~------~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
+..+.+|++|..++.|||+|...++|.+++++|+....++.. .+..|.|||+|+..+ .|||+| ....+|++
T Consensus 339 ~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~--nLY~td-~~~~~I~v 415 (628)
T 4a0p_A 339 LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSR--YIYWTC-EATNVINV 415 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTT--EEEEEE-TTTTEEEE
T ss_pred cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCC--eEEEEc-CCCCEEEE
Confidence 889999999999999999999999999999999887666554 567899999999988 999999 56689999
Q ss_pred EecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 222 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 222 ~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
++++|+.+.+++...+..|.+||||+..+.|||+|..... .+|+++++
T Consensus 416 ~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~--------------------------------~~I~r~~~ 463 (628)
T 4a0p_A 416 TRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERS--------------------------------PKIERAAL 463 (628)
T ss_dssp EETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTE--------------------------------EEEEEEET
T ss_pred EECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCC--------------------------------CeEEEEeC
Confidence 9999998888888889999999999999999998875531 26999999
Q ss_pred CCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCC
Q psy17325 302 DGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 379 (461)
Q Consensus 302 ~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~ 379 (461)
||+.+++++...+ |+||++|+.+++|||+|.. ..+|+++++||+.++++....+.+|.|||++ +
T Consensus 464 dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~------------~~~I~~~~~dG~~r~~~~~~~~~~P~glav~--~ 529 (628)
T 4a0p_A 464 DGTEREVLFFSGLSKPIALALDSRLGKLFWADSD------------LRRIESSDLSGANRIVLEDSNILQPVGLTVF--E 529 (628)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSCSCEEEEEEE--T
T ss_pred CCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCC------------CCEEEEEeCCCCceEEEEcCCCCCcEEEEEE--C
Confidence 9999999998777 9999999999999999988 8899999999999999987789999999995 6
Q ss_pred CeEEEEcCCCCeEEEEEecCCCCeEEEEEcc
Q psy17325 380 RRVYFADSKLDFIDFCNYDGTGRQQVILIDL 410 (461)
Q Consensus 380 ~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~ 410 (461)
++|||+|+..++|++++.. +|..+.++...
T Consensus 530 ~~ly~tD~~~~~i~~~~k~-~G~~~~~i~~~ 559 (628)
T 4a0p_A 530 NWLYWIDKQQQMIEKIDMT-GREGRTKVQAR 559 (628)
T ss_dssp TEEEEEETTTTEEEEEETT-SSSCCEEEECC
T ss_pred CEEEEEECCCCeEEEEECc-CCCCcEEEecc
Confidence 9999999999999999993 57776666653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=297.91 Aligned_cols=291 Identities=32% Similarity=0.584 Sum_probs=215.7
Q ss_pred CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcc---cCce-eeccCCccccCCCCee-eeCC
Q psy17325 30 LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYC---SQMC-TNTKGSYICSCNEGYV-LEYD 104 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C---~~~C-~~~~g~~~C~C~~g~~-l~~~ 104 (461)
++||. .+..|++.|.+++++|.|.|++||.+..++++|...++ ...-.. ...- ....+. .+. +...
T Consensus 1 i~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~-------~~~~~~~~ 71 (349)
T 3v64_C 1 VNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPVLLFANRIDIRQVLPHRS-------EYTLLLNN 71 (349)
T ss_dssp ---------CCSSEECCC---CCEECCTTEEECTTSSCEEESSS-CCEEEEECBSCEEEECTTSC-------CEEEEECS
T ss_pred CcccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCccccccc-CceeEeecccceEEEeCCCC-------eeEEeecC
Confidence 36887 67889999999999999999999999999999986654 110001 1111 011110 011 1111
Q ss_pred CCcee--eccccceeEEEec--cccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC
Q psy17325 105 NHTCK--AINHSAAFLIISN--RHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG 180 (461)
Q Consensus 105 ~~~C~--~~~~~~~~l~~~~--~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G 180 (461)
..... +.+.....+++++ ...|.++++++.. .+.++..++..|.|||+||.+++|||+|...++|.+++++|
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~----~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCC----ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 11111 2222333455443 4556777665543 24456778899999999999999999999999999999999
Q ss_pred CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCc
Q psy17325 181 TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 260 (461)
Q Consensus 181 ~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~ 260 (461)
+.+++++...+..|++||+||..| .|||+|++..++|+|++++|+.+++++...+.+|+|||+|+.+++|||+|...
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g--~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~- 224 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEG--TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH- 224 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT-
T ss_pred CceEEEEeCCCCCcceEEEecCcC--eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC-
Confidence 999888888889999999999989 99999977658999999999999988888899999999999999999999887
Q ss_pred eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeE
Q psy17325 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWL 338 (461)
Q Consensus 261 ~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l 338 (461)
++|++++++|+.+++++...+ |.||+++ ++.||||+..
T Consensus 225 ---------------------------------~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~----- 264 (349)
T 3v64_C 225 ---------------------------------HVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWH----- 264 (349)
T ss_dssp ---------------------------------TEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETT-----
T ss_pred ---------------------------------CEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCC-----
Confidence 468899999999888887666 9999995 6777777666
Q ss_pred EEeecCCCCceEEEe-ecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 339 FWTDWGENPRIERIG-MDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 339 ~~~d~~~~~~I~~~~-~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
+++|.+++ .+|+..+++. ..+..|.||++.+.....+.
T Consensus 265 -------~~~V~~~~~~~G~~~~~i~-~~~~~p~gi~v~~~~~qp~~ 303 (349)
T 3v64_C 265 -------TKSINSANKFTGKNQEIIR-NKLHFPMDIHTLHPQRQPAG 303 (349)
T ss_dssp -------TTEEEEEETTTCCSCEEEE-CSCSCCCCEEEECGGGSCCC
T ss_pred -------CCeEEEEEccCCCccEEec-cCCCCCceEEEEccccCccc
Confidence 88999998 7999998887 78999999999866554443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=276.16 Aligned_cols=242 Identities=29% Similarity=0.432 Sum_probs=207.2
Q ss_pred cceeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCCC
Q psy17325 114 SAAFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNIT 192 (461)
Q Consensus 114 ~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~~ 192 (461)
..++|++++++.|+++++++... ...++..++..|.+|++|+..+.|||+|...++|.+++++|... ..++...+.
T Consensus 3 ~~p~ll~~~~~~I~~i~l~~~~~---~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 3 SAPLLLYANRRDLRLVDATNGKE---NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp -CCEEEEECEEEEEEEETTCTTS---CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred CccEEEEEccCeEEEEECCCCce---EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence 35789999999999999876542 12345567788889999988999999999999999999999853 455556678
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeee
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~ 272 (461)
.|.|||+|+..+ .|||+| ....+|++++++|+.+++++...+..|.|||+|+.+++|||+|....
T Consensus 80 ~p~glavd~~~g--~ly~~d-~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~------------ 144 (318)
T 3sov_A 80 SPDGLACDWLGE--KLYWTD-SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV------------ 144 (318)
T ss_dssp CCCEEEEETTTT--EEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS------------
T ss_pred CccEEEEEcCCC--eEEEEE-CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC------------
Confidence 899999999988 999999 45679999999999998888788999999999999999999986421
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceE
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIE 350 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~ 350 (461)
++|++++++|+.+++++...+ |+||++|+.+++|||+|+. ..+|+
T Consensus 145 ---------------------~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~------------~~~I~ 191 (318)
T 3sov_A 145 ---------------------PKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK------------LNFIH 191 (318)
T ss_dssp ---------------------CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEE
T ss_pred ---------------------CEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC------------CCEEE
Confidence 469999999999998887666 9999999999999999888 89999
Q ss_pred EEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEc
Q psy17325 351 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 351 ~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~ 409 (461)
++++||+.+++++...+.+|.||++| ++.|||+|++.++|.+++.. +|....++..
T Consensus 192 ~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~-~G~~~~~i~~ 247 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKY-TGEGLREIHS 247 (318)
T ss_dssp EEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETT-TCCSCEEEEC
T ss_pred EEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECC-CCCceEEEeC
Confidence 99999999999986689999999995 78999999999999999983 5665555443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=266.84 Aligned_cols=237 Identities=24% Similarity=0.364 Sum_probs=200.8
Q ss_pred eeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC----CcEEEEecCCC
Q psy17325 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG----TNRIVLAKDNI 191 (461)
Q Consensus 116 ~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G----~~~~~l~~~~~ 191 (461)
++|++++++.|+++++++..+ ..+..++..|.|+++|+.++.|||+|...++|.+++++| +....++...+
T Consensus 2 ~~ll~~~~~~I~~i~~~~~~~-----~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 2 AYLFFTNRHEVRKMTLDRSEY-----TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp CEEEEECBSSEEEEETTSCCC-----EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred CEEEEECCCeEEEEECCCcce-----EehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 679999999999998876543 224567889999999999999999999999999999998 55566666667
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~ 271 (461)
..|.|||+|+..+ .|||+| ....+|.+++++|..+++++...+..|.+|++|+.+++|||+|....
T Consensus 77 ~~p~glavd~~~~--~ly~~d-~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~----------- 142 (316)
T 1ijq_A 77 QAPDGLAVDWIHS--NIYWTD-SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----------- 142 (316)
T ss_dssp SCCCEEEEETTTT--EEEEEE-TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-----------
T ss_pred CCcCEEEEeecCC--eEEEEE-CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-----------
Confidence 8899999999888 999999 55679999999999888888777889999999999999999987531
Q ss_pred eeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 272 ~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
++|++++++|+.+++++...+ |+||++|+.+++|||+|.. .++|
T Consensus 143 ----------------------~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~------------~~~I 188 (316)
T 1ijq_A 143 ----------------------AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------LHSI 188 (316)
T ss_dssp ----------------------CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEE
T ss_pred ----------------------CeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECC------------CCeE
Confidence 368999999999988876655 9999999999999999888 8899
Q ss_pred EEEeecCCCeEEEeeC--CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEE
Q psy17325 350 ERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILI 408 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~~--~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~ 408 (461)
++++++|+.+++++.. .+.+|.||++| +++|||+|+..++|.+++.. +|....++.
T Consensus 189 ~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~-~g~~~~~i~ 246 (316)
T 1ijq_A 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL-TGSDVNLLA 246 (316)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT-TCCCCEEEE
T ss_pred EEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCC-CCcceEEEe
Confidence 9999999999988753 57899999996 69999999999999999973 566555544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=267.18 Aligned_cols=222 Identities=31% Similarity=0.616 Sum_probs=183.7
Q ss_pred eEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc-EEEEecccc
Q psy17325 162 HIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR-STIISTKIY 238 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~-~~i~~~~~~ 238 (461)
.|++++ .+.|.++++++.. .+.++ .++.+|.+|++|+..+ .|||+| ....+|.|++++|+.. +.++...+.
T Consensus 6 ~ll~~~--~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~--~lyw~D-~~~~~I~r~~~~g~~~~~~~~~~~l~ 79 (318)
T 3sov_A 6 LLLYAN--RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHG--LIYWSD-VSEEAIKRTEFNKTESVQNVVVSGLL 79 (318)
T ss_dssp EEEEEC--EEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGT--EEEEEE-TTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred EEEEEc--cCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCC--EEEEEE-CCCCcEEEEEccCCCceEEEEcCCCC
Confidence 356665 3689999999874 33333 3456789999999888 999999 4567999999999853 456667788
Q ss_pred cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--ee
Q psy17325 239 WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YE 316 (461)
Q Consensus 239 ~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~ 316 (461)
.|.|||+|+.+++|||+|... ++|.+++++|+.+++++...+ |+
T Consensus 80 ~p~glavd~~~g~ly~~d~~~----------------------------------~~I~~~~~dG~~~~~l~~~~~~~P~ 125 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSET----------------------------------NRIEVSNLDGSLRKVLFWQELDQPR 125 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTT----------------------------------TEEEEEETTSCSCEEEECSSCSSEE
T ss_pred CccEEEEEcCCCeEEEEECCC----------------------------------CEEEEEECCCCcEEEEEeCCCCCcc
Confidence 999999999999999999877 458899999999998886665 99
Q ss_pred eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEE
Q psy17325 317 ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCN 396 (461)
Q Consensus 317 ~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~ 396 (461)
+|++||.+|.|| |+||+..++|+|+++||+.+++++...+.+|+||++|+.+++|||+|+..++|++++
T Consensus 126 giavdp~~g~ly-----------~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d 194 (318)
T 3sov_A 126 AIALDPSSGFMY-----------WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 194 (318)
T ss_dssp EEEEEGGGTEEE-----------EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEE-----------EEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence 999999877555 556666899999999999999998788999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 397 YDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 397 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
+ +|..+.++... .+ ..|++|+++++.|||||++++.|.
T Consensus 195 ~--dG~~~~~~~~~--~~---------~~P~glav~~~~lywtd~~~~~V~ 232 (318)
T 3sov_A 195 L--DGTNRQAVVKG--SL---------PHPFALTLFEDILYWTDWSTHSIL 232 (318)
T ss_dssp T--TSCSCEEEECS--CC---------SCEEEEEEETTEEEEEETTTTEEE
T ss_pred C--CCCceEEEecC--CC---------CCceEEEEeCCEEEEEecCCCeEE
Confidence 9 55555555431 11 348999999999999999998773
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=260.35 Aligned_cols=223 Identities=22% Similarity=0.451 Sum_probs=182.1
Q ss_pred EEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC----CCcEEEEecccc
Q psy17325 163 IYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG----SNRSTIISTKIY 238 (461)
Q Consensus 163 ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG----~~~~~i~~~~~~ 238 (461)
|++++. +.|.++++++.....++. .+.+|.|+++|+..+ .|||+| ....+|.+++++| +..+.++...+.
T Consensus 4 ll~~~~--~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~--~ly~~D-~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTNR--HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN--RIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEECB--SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTT--EEEEEE-TTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC--CeEEEEECCCcceEehhc-CCCceEEEEEEeCCC--EEEEEE-CCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 556554 579999999887666654 568899999999988 999999 4567999999998 566667766788
Q ss_pred cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--ee
Q psy17325 239 WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YE 316 (461)
Q Consensus 239 ~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~ 316 (461)
.|.|||+|+.+++|||+|... ++|.+++++|+.+++++...+ |+
T Consensus 78 ~p~glavd~~~~~ly~~d~~~----------------------------------~~I~~~~~~g~~~~~~~~~~~~~P~ 123 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVL----------------------------------GTVSVADTKGVKRKTLFRENGSKPR 123 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTT----------------------------------TEEEEEETTSSSEEEEEECTTCCEE
T ss_pred CcCEEEEeecCCeEEEEECCC----------------------------------CEEEEEeCCCCceEEEEECCCCCcc
Confidence 999999999999999999877 458889999999888887555 99
Q ss_pred eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEE
Q psy17325 317 ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCN 396 (461)
Q Consensus 317 ~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~ 396 (461)
+|++||.+|+|||+ ||+..++|+++++||+.+++++...+.+|+||++|+.+++|||+|+..++|++++
T Consensus 124 ~iavdp~~g~ly~~-----------d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d 192 (316)
T 1ijq_A 124 AIVVDPVHGFMYWT-----------DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (316)
T ss_dssp EEEEETTTTEEEEE-----------ECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEeCCCCCEEEEE-----------ccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEe
Confidence 99999998876665 5554589999999999999988778999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 397 YDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 397 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
+ +|..+.++......+ ..|.+|++++++|||||++++.|.
T Consensus 193 ~--dg~~~~~~~~~~~~~---------~~P~giav~~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 193 V--NGGNRKTILEDEKRL---------AHPFSLAVFEDKVFWTDIINEAIF 232 (316)
T ss_dssp T--TSCSCEEEEECTTTT---------SSEEEEEEETTEEEEEETTTTEEE
T ss_pred c--CCCceEEEeecCCcc---------CCcEEEEEECCEEEEEECCCCeEE
Confidence 9 465555554422222 247899999999999999998773
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=234.45 Aligned_cols=241 Identities=23% Similarity=0.389 Sum_probs=198.7
Q ss_pred eeEEEeccccceeecccccCcccc-cceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCc
Q psy17325 116 AFLIISNRHSILVADLEEKGKDHR-AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQP 194 (461)
Q Consensus 116 ~~l~~~~~~~I~~~~l~~~~~~~s-~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p 194 (461)
++|++++...|+++++++.....- ...++......|+++++|+.+++|||+|...++|.+++++|.....++...+..|
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 578888888899998876543210 1123333456899999999999999999999999999999988777776667889
Q ss_pred eeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeec
Q psy17325 195 RGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN 274 (461)
Q Consensus 195 ~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~ 274 (461)
.+|++|+..+ .|||+| ....+|.+++++|+.++.++...+..|.+|++|+.+++|||++.....
T Consensus 82 ~~ia~d~~~~--~lyv~d-~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~------------- 145 (267)
T 1npe_A 82 EGIALDHLGR--TIFWTD-SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN------------- 145 (267)
T ss_dssp EEEEEETTTT--EEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS-------------
T ss_pred cEEEEEecCC--eEEEEE-CCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC-------------
Confidence 9999999888 999999 456799999999988887777777899999999989999999976211
Q ss_pred cceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 275 YSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 275 ~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
++|++..++|+..+++....+ |++|++|+.+++|||++.. .++|.++
T Consensus 146 -------------------~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~------------~~~I~~~ 194 (267)
T 1npe_A 146 -------------------PKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG------------THRAECL 194 (267)
T ss_dssp -------------------CEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred -------------------cEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC------------CCEEEEE
Confidence 468899999998888775555 9999999999999999888 8899999
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
+++|..++.++ ..+..|.||++| +++|||+|...++|.+++.+ +|.....+
T Consensus 195 ~~~g~~~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~-~g~~~~~i 245 (267)
T 1npe_A 195 NPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA-ISKEMDTF 245 (267)
T ss_dssp ETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETT-TTEEEEEE
T ss_pred ecCCCceEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeCC-CCCceEEE
Confidence 99998877777 578899999996 69999999999999999993 35544433
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=226.34 Aligned_cols=223 Identities=25% Similarity=0.397 Sum_probs=181.6
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEE-----EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRI-----VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~-----~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~ 235 (461)
..|||++. ++|.+++++|...+ .++.....+|.+|++|+..+ .|||+| ....+|.+++++|.....++..
T Consensus 2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~--~ly~~d-~~~~~I~~~~~~g~~~~~~~~~ 76 (267)
T 1npe_A 2 THLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK--VVYWTD-ISEPSIGRASLHGGEPTTIIRQ 76 (267)
T ss_dssp EEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT--EEEEEE-TTTTEEEEEESSSCCCEEEECT
T ss_pred cEEEEEcC--CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC--EEEEEE-CCCCEEEEEecCCCCcEEEEEC
Confidence 35888885 58999999987632 23332335799999999888 999999 4567999999999887777766
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
.+..|.+|++|+.+++|||+|... ++|.+.+++|+..+++....+
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~d~~~----------------------------------~~I~~~~~~g~~~~~~~~~~~~ 122 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWTDSQL----------------------------------DRIEVAKMDGTQRRVLFDTGLV 122 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTT----------------------------------TEEEEEETTSCSCEEEECSSCS
T ss_pred CCCCccEEEEEecCCeEEEEECCC----------------------------------CEEEEEEcCCCCEEEEEECCCC
Confidence 778999999999899999999876 458889999988877776554
Q ss_pred -eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEE
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 393 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~ 393 (461)
|++|++||.+++|||++.. ..+++|+++++||+..+++....+..|+||++|+.+++|||+|...++|.
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~----------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWN----------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp SEEEEEEETTTTEEEEEECC----------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CccEEEEeeCCCEEEEEECC----------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 9999999988887776543 12578999999999988887677889999999988999999999999999
Q ss_pred EEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee
Q psy17325 394 FCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 394 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
++++ +|..+..+... . ..|.+|+++++.|||++++++.|
T Consensus 193 ~~~~--~g~~~~~~~~~---~---------~~P~gi~~d~~~lyva~~~~~~v 231 (267)
T 1npe_A 193 CLNP--AQPGRRKVLEG---L---------QYPFAVTSYGKNLYYTDWKTNSV 231 (267)
T ss_dssp EEET--TEEEEEEEEEC---C---------CSEEEEEEETTEEEEEETTTTEE
T ss_pred EEec--CCCceEEEecC---C---------CCceEEEEeCCEEEEEECCCCeE
Confidence 9999 56554444321 1 23789999999999999998877
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-23 Score=198.07 Aligned_cols=245 Identities=11% Similarity=0.195 Sum_probs=177.7
Q ss_pred cccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCC-------------CeEEEEeCCCCcEEEEecC
Q psy17325 123 RHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL-------------NRIEVCDENGTNRIVLAKD 189 (461)
Q Consensus 123 ~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~-------------~~I~~~~~~G~~~~~l~~~ 189 (461)
...|.+++.++... ..+..+ .+..+.++ ++.||+++... ..|.+++++|+.++.|...
T Consensus 36 ~~~ly~~~~dg~~~-----~~l~~~--~~~~i~~~--g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~ 106 (302)
T 3s25_A 36 NGRLYAMNIDGSNI-----HKLSND--TAMYINAD--KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD 106 (302)
T ss_dssp TTEEEEEETTSCSC-----EEEEEE--EEEEEEEC--SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS
T ss_pred CceEEEEcCCCCCC-----EEccCC--ceeeEEEc--CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC
Confidence 45677776665432 122222 24455554 88999998653 5799999999988777542
Q ss_pred CCCCceeEEEcCCCCceEEEEeec--CCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeeccc
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDW--GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSL 267 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~--~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~ 267 (461)
+ +.++.+..+ +|||++. .....|+++++||+.++.|..... +++||.+++|||++...
T Consensus 107 ----~-~~~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~-------- 166 (302)
T 3s25_A 107 ----P-CIYASLIGN--YIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKN-------- 166 (302)
T ss_dssp ----C-EEEEEEETT--EEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEECTTT--------
T ss_pred ----C-ccEEEEeCC--EEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCCC--------
Confidence 1 334555556 9999983 456899999999999988876533 56788899999998744
Q ss_pred ceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCC
Q psy17325 268 EIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENP 347 (461)
Q Consensus 268 ~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~ 347 (461)
..|++++++|+.+++|... +..+++.|.++. |||++|+...
T Consensus 167 --------------------------~~Iy~~~l~g~~~~~l~~~--~~~~~~~P~g~~-----------iy~t~~~~~~ 207 (302)
T 3s25_A 167 --------------------------GQLYRYDTASQSEALFYDC--NCYKPVVLDDTN-----------VYYMDVNRDN 207 (302)
T ss_dssp --------------------------CCEEEEETTTTEEEEEECS--CEEEEEEEETTE-----------EEEEEGGGTT
T ss_pred --------------------------ceEEEEECCCCCEEEEeCC--CccceeeecCCE-----------EEEEEcCCCc
Confidence 4699999999998888654 333456677775 5556666568
Q ss_pred ceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE-cCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcce
Q psy17325 348 RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA-DSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPA 426 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~-d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (461)
+|+|++|||+++++|.++.+ | .+|+.+++|||+ +...+.|+++++ +|..++.+.... .
T Consensus 208 ~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~--DG~~r~~l~~~~--------------~ 266 (302)
T 3s25_A 208 AIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQRGGDNPALCVVKN--DGTGFKELAKGE--------------F 266 (302)
T ss_dssp EEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEECSSSCEEEEEET--TSCCCEEEEESC--------------E
T ss_pred EEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEECCCCcEEEEEEC--CCCccEEeeCCc--------------c
Confidence 99999999999999886555 3 377789999997 677799999999 555544444321 3
Q ss_pred EEEeeeCCEEEEEeCCCcee-ecceeEEeee
Q psy17325 427 LALDLENGMLYYSTEGAEFL-KTPLFCITRN 456 (461)
Q Consensus 427 ~~l~~~~~~lYwtd~~~~~i-~~~~~~~~~~ 456 (461)
.+|++++++|||||+..+.| |+++.|..+-
T Consensus 267 ~~i~i~~d~Iy~td~~~~~i~~~~~dGs~~~ 297 (302)
T 3s25_A 267 CNINVTSQYVYFTDFVSNKEYCTSTQNPDTI 297 (302)
T ss_dssp EEEEECSSEEEEEETTTCCEEEEESSSCCSC
T ss_pred ceEEEeCCEEEEEECCCCeEEEEECCCCCce
Confidence 47999999999999998766 5666554443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-23 Score=206.97 Aligned_cols=248 Identities=12% Similarity=0.103 Sum_probs=186.4
Q ss_pred Cccceeeeeeee-cCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCC---CcEEEE
Q psy17325 147 GLDLVEGLAYDW-IGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN---PRIERI 222 (461)
Q Consensus 147 g~~~p~~iavd~-~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~---~~I~~~ 222 (461)
++..|.+||+|+ ..++||++|.. ++|.++++++...+.+.. ....|.+|++|+..+ +||++|.... ..+...
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~ 210 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYIL 210 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEE
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEE
Confidence 478999999998 58999999998 999999999987766655 557899999999877 8999996332 357777
Q ss_pred ecCCCCc--EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEe
Q psy17325 223 GMDGSNR--STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN 300 (461)
Q Consensus 223 ~~dG~~~--~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~ 300 (461)
..+|... ..+. .+..|.++++|+.+++|||+|... ++|++.+
T Consensus 211 ~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~----------------------------------~~V~~~~ 254 (430)
T 3tc9_A 211 TRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNA----------------------------------GQVFRYD 254 (430)
T ss_dssp EGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTT----------------------------------TEEEEEE
T ss_pred eCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCC----------------------------------CEEEEEE
Confidence 7777654 2232 477899999999889999999877 4588888
Q ss_pred CCCCceEEEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-----eEEEee--------
Q psy17325 301 MDGSNASILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-----RSTIIS-------- 364 (461)
Q Consensus 301 ~~g~~~~~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-----~~~l~~-------- 364 (461)
+++.....+..... |++|++||.++.|||++.. +++|.+.+.+|.. ..++..
T Consensus 255 ~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~ 322 (430)
T 3tc9_A 255 FTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN------------QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWV 322 (430)
T ss_dssp TTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT------------TTEEEEEEEETTTTEECCCEEEEECTTCBCCB
T ss_pred CCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC------------CCEEEEEeCCcccccccceEEEeccCCCCCCC
Confidence 88776644443322 9999999988889999888 8899999988752 223331
Q ss_pred ------CCCCCce-eEEEec-------CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEcccccee---ec-c-CCCCCcc
Q psy17325 365 ------TKIYWPN-GLTLDI-------ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFT---ND-L-MGDNGVP 425 (461)
Q Consensus 365 ------~~l~~p~-glaiD~-------~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~---~~-~-~~~~~~~ 425 (461)
..+..|. |++++. .+++|||+|...++|.+++. +|....+...+..+.. .. . ....+..
T Consensus 323 dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~--~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~ 400 (430)
T 3tc9_A 323 DGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP--QGRVTTFAGRGSNGTSGYNDGDLRQEARFNH 400 (430)
T ss_dssp CEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT--TSEEEEEEECCTTSSSSCBCEETTTTCBCSS
T ss_pred CCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC--CCcEEEEEeCCCCCCCcccCCCchhhcEeCC
Confidence 1377899 899963 46899999999999999997 6766555543211111 00 0 0001345
Q ss_pred eEEEeee--CCEEEEEeCCCceeec
Q psy17325 426 ALALDLE--NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 426 ~~~l~~~--~~~lYwtd~~~~~i~~ 448 (461)
|.+|+++ ++.||++|.++++||.
T Consensus 401 P~giavd~~~g~lyVaD~~n~rIr~ 425 (430)
T 3tc9_A 401 PEGIVYDEERECFFIGDRENRRIRK 425 (430)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CcEEEEECCCCEEEEEECCCCeEEE
Confidence 7888887 5899999999999875
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=203.92 Aligned_cols=248 Identities=12% Similarity=0.091 Sum_probs=179.8
Q ss_pred Cccceeeeeeee--cCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC---CCcEEE
Q psy17325 147 GLDLVEGLAYDW--IGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE---NPRIER 221 (461)
Q Consensus 147 g~~~p~~iavd~--~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~---~~~I~~ 221 (461)
.|..|.+|++|+ ..++|||+|.. ++|.++++.+.....+.. .+..|.+|++|+. | .||++|... ...+.+
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-~~~~P~giavd~d-G--~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLN-G--DMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-CCSCEEEEEECTT-C--CEEEEECCSCTTSEEEEE
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-CCCCccEEEECCC-C--CEEEEcCCCCcccceEEE
Confidence 578899999998 37999999998 999999996555555543 5678999999997 4 499999532 234666
Q ss_pred EecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 222 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 222 ~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
...++..........+..|.++++|+..++|||+|... ++|++.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~----------------------------------~~V~~~d~ 257 (433)
T 4hw6_A 212 FTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHH----------------------------------AMISSYDP 257 (433)
T ss_dssp ECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTC----------------------------------SEEEEECT
T ss_pred EECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCC----------------------------------CEEEEEEC
Confidence 66655443111222578999999999899999999877 45788888
Q ss_pred C-CCceEEEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-----eEEEee--------
Q psy17325 302 D-GSNASILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-----RSTIIS-------- 364 (461)
Q Consensus 302 ~-g~~~~~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-----~~~l~~-------- 364 (461)
+ |...+.+..... +.+|++||.++.|||++.. +++|.++++++.. ..+++.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~------------~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~ 325 (433)
T 4hw6_A 258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG------------KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWV 325 (433)
T ss_dssp TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT------------TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCB
T ss_pred CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC------------CCEEEEEeCCCCCcccCcEEEEEecCCCCccC
Confidence 7 544244443322 6789999988889999988 8899998887532 223331
Q ss_pred ------CCCCCceeEEE---------ecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccc---cceeec-cC-CCCCc
Q psy17325 365 ------TKIYWPNGLTL---------DIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM---VEFTND-LM-GDNGV 424 (461)
Q Consensus 365 ------~~l~~p~glai---------D~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~---~~~~~~-~~-~~~~~ 424 (461)
..+.+|.||++ | .+++|||+|...++|.+++. +|....++.... .+.... .. ...+.
T Consensus 326 dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~--~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~ 402 (433)
T 4hw6_A 326 DGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTP--EGRVTTYAGRGNSREWGYVDGELRSQALFN 402 (433)
T ss_dssp CEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECT--TSEEEEEECCCTTCSSCCBCEETTTTCBCS
T ss_pred CCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECC--CCCEEEEEeCCCCCccccCCCccccccEeC
Confidence 24778999999 6 88999999999999999998 776544443322 111000 00 01245
Q ss_pred ceEEEeee--CCEEEEEeCCCceeec
Q psy17325 425 PALALDLE--NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 425 ~~~~l~~~--~~~lYwtd~~~~~i~~ 448 (461)
.|.+|+++ ++.||++|..+++||+
T Consensus 403 ~P~giavd~~~g~lyVaD~~n~rIr~ 428 (433)
T 4hw6_A 403 HPTSIAYDMKRKCFYIGDCDNHRVRK 428 (433)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEE
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 58888888 7899999999999975
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=196.46 Aligned_cols=247 Identities=14% Similarity=0.157 Sum_probs=182.9
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
.|..|.+|++| ..++|||+|...++|.++++++.....+... ...|. +++++..+ .|||++.....+|++.+.++
T Consensus 129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 57889999999 4678999999999999999997776666554 35688 99999987 99999954445899999987
Q ss_pred CCcEEEE----ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 227 SNRSTII----STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 227 ~~~~~i~----~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
......+ ......|.++++|+.+++||+++.. ++|++.+++
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~-----------------------------------~~I~~~d~~ 248 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN-----------------------------------KNFGRFNVK 248 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTT-----------------------------------CEEEEEETT
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECC-----------------------------------CcEEEEECC
Confidence 6553333 2246789999999989999998763 357888887
Q ss_pred CCceEEE----EeCCe---ee-eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCC--------
Q psy17325 303 GSNASIL----VSGQL---YE-ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK-------- 366 (461)
Q Consensus 303 g~~~~~l----~~~~~---p~-~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~-------- 366 (461)
+....++ ..... |. +|++||.++.|||++.. +++|++.+.+|.. ..++...
T Consensus 249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~~-~~~~g~~~~~g~~dg 315 (409)
T 3hrp_A 249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------------LSSVYKITPDGEC-EWFCGSATQKTVQDG 315 (409)
T ss_dssp TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------------TTEEEEECTTCCE-EEEEECTTCCSCBCE
T ss_pred CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------------CCEEEEEecCCCE-EEEEeCCCCCCcCCC
Confidence 7665554 22112 66 99999988999999988 8899999999873 3333232
Q ss_pred ------CCCceeEEEecCCCeEEEEcC-CCCeEEEEEecCCCCeEEEEEcc-ccceeecc-CCCCCcceEEEeeeC-CEE
Q psy17325 367 ------IYWPNGLTLDIATRRVYFADS-KLDFIDFCNYDGTGRQQVILIDL-MVEFTNDL-MGDNGVPALALDLEN-GML 436 (461)
Q Consensus 367 ------l~~p~glaiD~~~~~ly~~d~-~~~~I~~~~~~g~g~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~~-~~l 436 (461)
+.+|.||++|+ +++||++|. ..++|.++++. +|....+.... ..+..... ....+..|.+|+++. +.|
T Consensus 316 ~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~-~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l 393 (409)
T 3hrp_A 316 LREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDIL-DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY 393 (409)
T ss_dssp EGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETT-TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred cccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECC-CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence 78899999995 567999999 99999999952 56654444331 11110000 001134578888874 899
Q ss_pred EEEeCCCceeec
Q psy17325 437 YYSTEGAEFLKT 448 (461)
Q Consensus 437 Ywtd~~~~~i~~ 448 (461)
|++|+.+++||.
T Consensus 394 yVad~~n~~Ir~ 405 (409)
T 3hrp_A 394 WIAEAWGKAIRK 405 (409)
T ss_dssp EEEESTTCEEEE
T ss_pred EEEECCCCeEEE
Confidence 999999999864
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=193.24 Aligned_cols=252 Identities=14% Similarity=0.135 Sum_probs=185.8
Q ss_pred cCccceeeeeeee-cCCeEEEEeCCCCeEEEEeCCCCcEEEEecC---CCCCceeEEE-------cCCCCceEEEEeecC
Q psy17325 146 SGLDLVEGLAYDW-IGGHIYWLDSRLNRIEVCDENGTNRIVLAKD---NITQPRGMML-------DPSPGTRWLFWTDWG 214 (461)
Q Consensus 146 ~g~~~p~~iavd~-~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~---~~~~p~~ia~-------d~~~g~~~ly~td~~ 214 (461)
.+|..|.+|++|+ ..++||+++...++|.++++.+....+++.. .+..|++|++ |+..+ +||++|+.
T Consensus 136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~ 213 (496)
T 3kya_A 136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDY 213 (496)
T ss_dssp BCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECC
T ss_pred cccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCC
Confidence 4577899999998 5899999999889999999999888877654 3557999999 99866 89999976
Q ss_pred C-----CCcEEEEe--cCCCCcE----EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEE
Q psy17325 215 E-----NPRIERIG--MDGSNRS----TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLY 283 (461)
Q Consensus 215 ~-----~~~I~~~~--~dG~~~~----~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~y 283 (461)
. ...|..+. .+|.... ..+. ...+|.++++|+.+++||+++...+
T Consensus 214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g----------------------- 269 (496)
T 3kya_A 214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKG----------------------- 269 (496)
T ss_dssp CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTT-----------------------
T ss_pred CCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCC-----------------------
Confidence 4 23466664 3344431 2333 4679999999999999999999885
Q ss_pred EEecCCCCcceeeeEEeCC--------CCc-----------eEEEEeCC--e-eeeEEEeccCCeEEEeecCceeeEEEe
Q psy17325 284 WIDEGGNGVPLKIGKANMD--------GSN-----------ASILVSGQ--L-YEALALDLENGMLYYSTLKCTRWLFWT 341 (461)
Q Consensus 284 w~d~~~~~~~~~I~~~~~~--------g~~-----------~~~l~~~~--~-p~~iavd~~~~~lY~t~~~~~~~l~~~ 341 (461)
+|++.+++ |.. .+.++... . |++|+++|.++.||++|..
T Consensus 270 -----------~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-------- 330 (496)
T 3kya_A 270 -----------QVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-------- 330 (496)
T ss_dssp -----------EEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT--------
T ss_pred -----------EEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC--------
Confidence 45666654 222 22333322 2 9999999988889999988
Q ss_pred ecCCCCceEEEeecCCCe-----EEEee--------------CCCCCce-eEEEec------CCCeEEEEcCCCCeEEEE
Q psy17325 342 DWGENPRIERIGMDGSNR-----STIIS--------------TKIYWPN-GLTLDI------ATRRVYFADSKLDFIDFC 395 (461)
Q Consensus 342 d~~~~~~I~~~~~dG~~~-----~~l~~--------------~~l~~p~-glaiD~------~~~~ly~~d~~~~~I~~~ 395 (461)
+++|+|+++||... .+++- ..|.+|. |+++|. .++.||++|..+++|+++
T Consensus 331 ----~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i 406 (496)
T 3kya_A 331 ----NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKV 406 (496)
T ss_dssp ----TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEE
T ss_pred ----CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEE
Confidence 89999999988652 33331 2467899 888873 578999999999999999
Q ss_pred EecCCCCeEEEEEcccc---------ceeec-cC-CCCCcceEEEeeeC--CEEEEEeCCCceeec
Q psy17325 396 NYDGTGRQQVILIDLMV---------EFTND-LM-GDNGVPALALDLEN--GMLYYSTEGAEFLKT 448 (461)
Q Consensus 396 ~~~g~g~~~~~~~~~~~---------~~~~~-~~-~~~~~~~~~l~~~~--~~lYwtd~~~~~i~~ 448 (461)
+. +|...++...+.. +.... .. ...+..|.+|+++. +.||++|..+++||+
T Consensus 407 ~~--~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 407 TP--EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp CT--TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eC--CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 98 7876666554321 11100 00 11255688998884 899999999999975
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=176.66 Aligned_cols=240 Identities=16% Similarity=0.100 Sum_probs=174.1
Q ss_pred CccceeeeeeeecCCeEEEEeCCC------------------------CeEEEEeCC-CCcEEEEecCCCCCceeEEEcC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRL------------------------NRIEVCDEN-GTNRIVLAKDNITQPRGMMLDP 201 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~------------------------~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~ 201 (461)
.+..|.+||+|+ .++||+++... ++|.+.+.+ |+.........+..|.+|++|+
T Consensus 22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence 456799999996 57999999887 469999986 7765555555677899999998
Q ss_pred CCCceEEEEeecCCCCcEEEEecCCC--CcEEEE--------ecccccceeEEeeccCCeeEEecC-CCceeeeccccee
Q psy17325 202 SPGTRWLFWTDWGENPRIERIGMDGS--NRSTII--------STKIYWPNGLTLDIATRRVYFADS-KLDFIDCKSLEIK 270 (461)
Q Consensus 202 ~~g~~~ly~td~~~~~~I~~~~~dG~--~~~~i~--------~~~~~~P~glavD~~~~~ly~~d~-~~~~i~~~~~~~~ 270 (461)
. | .||++| ..+.+|.+.+.+|. ....+. ...+..|.+|++|+.+++||++|. ..
T Consensus 101 ~-g--~l~v~d-~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~----------- 165 (329)
T 3fvz_A 101 D-G--NYWVTD-VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN----------- 165 (329)
T ss_dssp T-S--CEEEEE-TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC-----------
T ss_pred C-C--CEEEEE-CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC-----------
Confidence 5 5 599999 55679999999987 344443 234668999999987899999996 45
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC---------Ce--eeeEEEeccCCeEEEeecCceeeEE
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG---------QL--YEALALDLENGMLYYSTLKCTRWLF 339 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~---------~~--p~~iavd~~~~~lY~t~~~~~~~l~ 339 (461)
++|.+.+.+|.....+... .+ |.+|++|+.+++||+++..
T Consensus 166 -----------------------~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------ 216 (329)
T 3fvz_A 166 -----------------------SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------ 216 (329)
T ss_dssp -----------------------CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------
T ss_pred -----------------------CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------
Confidence 3577777777766655321 22 9999999988999999988
Q ss_pred EeecCCCCceEEEeec-CCCeEEEeeC-CCCCceeEEEec-----CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEcccc
Q psy17325 340 WTDWGENPRIERIGMD-GSNRSTIIST-KIYWPNGLTLDI-----ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMV 412 (461)
Q Consensus 340 ~~d~~~~~~I~~~~~d-G~~~~~l~~~-~l~~p~glaiD~-----~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~ 412 (461)
+++|.+.+.+ |+....+... ....|.++++.+ .++++|+++....+|..+++. +|.....+.....
T Consensus 217 ------~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~-~g~~~~~~~~~~~ 289 (329)
T 3fvz_A 217 ------NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS-SGEIIDVFKPVRK 289 (329)
T ss_dssp ------TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETT-TCCEEEEECCSSS
T ss_pred ------CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcC-CCeEEEEEcCCCC
Confidence 8899999987 7766665422 223455444432 345677777777899999973 5665444321111
Q ss_pred ceeeccCCCCCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 413 EFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
. +..|.+|+++ +|.||++|..+++|+
T Consensus 290 ~---------~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 290 H---------FDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp C---------CSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred c---------cCCeeEEEECCCCCEEEEECCCCEEE
Confidence 1 2236777775 459999999999875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=180.92 Aligned_cols=226 Identities=14% Similarity=0.224 Sum_probs=162.6
Q ss_pred eeEEEecc-ccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCC----eEEEEeCCCCcE--EEEec
Q psy17325 116 AFLIISNR-HSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLN----RIEVCDENGTNR--IVLAK 188 (461)
Q Consensus 116 ~~l~~~~~-~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~----~I~~~~~~G~~~--~~l~~ 188 (461)
..|++++. +.|+++++++... ..+..++..|.+|++|+.++.|||+|...+ .+.+.+.+|... ..+.
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v-----~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~- 223 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYV-----STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT- 223 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEE-----EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-
T ss_pred CeEEEEeCCCcEEEEECCCCEE-----EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-
Confidence 34555554 5666666654321 123457788999999988888999998544 567788888664 3333
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec-ccccceeEEeeccCCeeEEecCCCceeeeccc
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST-KIYWPNGLTLDIATRRVYFADSKLDFIDCKSL 267 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~-~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~ 267 (461)
.+..|.++++||..| .|||+|+. +.+|+++++++.....+... ...+|.+|++|+.+++|||+|...++
T Consensus 224 -~~~~p~giavdp~~g--~lyv~d~~-~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~------ 293 (430)
T 3tc9_A 224 -KGQNCNGAETHPING--ELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY------ 293 (430)
T ss_dssp -ECSSCCCEEECTTTC--CEEEEETT-TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE------
T ss_pred -cCCCceEEEEeCCCC--EEEEEECC-CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE------
Confidence 357899999999878 99999954 57999999998765344332 34689999999988889999998855
Q ss_pred ceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-----eEEEEeC--------------Ce--ee-eEEEec---
Q psy17325 268 EIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-----ASILVSG--------------QL--YE-ALALDL--- 322 (461)
Q Consensus 268 ~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-----~~~l~~~--------------~~--p~-~iavd~--- 322 (461)
|.+.+++|.. ..++... .+ |. +++++.
T Consensus 294 ----------------------------I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y 345 (430)
T 3tc9_A 294 ----------------------------ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAY 345 (430)
T ss_dssp ----------------------------EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGG
T ss_pred ----------------------------EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccc
Confidence 4444444421 1122211 12 88 899963
Q ss_pred ----cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee----------------CCCCCceeEEEecCCCeE
Q psy17325 323 ----ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS----------------TKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 323 ----~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~----------------~~l~~p~glaiD~~~~~l 382 (461)
..|.|||+|.. +++|.+.+.+|...++... ..+.+|.||++|+.++.|
T Consensus 346 ~~~D~~g~lyvaD~~------------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~l 413 (430)
T 3tc9_A 346 KGSSDEYDFYFCDRE------------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECF 413 (430)
T ss_dssp TTSSCCEEEEEEEGG------------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEE
T ss_pred cccCCCCeEEEEECC------------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEE
Confidence 35788888877 8899999988854443321 126689999999778999
Q ss_pred EEEcCCCCeEEEEEe
Q psy17325 383 YFADSKLDFIDFCNY 397 (461)
Q Consensus 383 y~~d~~~~~I~~~~~ 397 (461)
|++|..+++|.++++
T Consensus 414 yVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 414 FIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEGGGTEEEEEEE
T ss_pred EEEECCCCeEEEEcc
Confidence 999999999999988
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=175.15 Aligned_cols=208 Identities=14% Similarity=0.264 Sum_probs=156.4
Q ss_pred ccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEe---CCCCeEEEEeCCCCcEEEEecCCCCCceeEE
Q psy17325 122 NRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLD---SRLNRIEVCDENGTNRIVLAKDNITQPRGMM 198 (461)
Q Consensus 122 ~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d---~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia 198 (461)
++..|+++++++... ..+..+. +.++...++.|||++ .....|.+.+++|+.++.|..... ++
T Consensus 86 n~~~Iy~i~~dg~~~-----~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~ 151 (302)
T 3s25_A 86 DRNSLCRIKRNGHGS-----TVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FT 151 (302)
T ss_dssp CSEEEEEEETTSCCC-----EEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CC
T ss_pred CCCeEEEEeCCCCcc-----eEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eE
Confidence 356778887776542 2333332 335555799999999 677899999999999888877543 45
Q ss_pred EcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeecccee
Q psy17325 199 LDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTI 278 (461)
Q Consensus 199 ~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~ 278 (461)
++|..+ .|||++- ..++|++++++|+.++.|... +..++++|.++.|||++....
T Consensus 152 ~~~~g~--~iy~t~~-g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~------------------ 206 (302)
T 3s25_A 152 CNTSDR--YFYYNNP-KNGQLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRD------------------ 206 (302)
T ss_dssp SEEETT--EEEEECT-TTCCEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGT------------------
T ss_pred eeEECC--EEEEEeC-CCceEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCC------------------
Confidence 677777 9999994 568999999999988877543 333456677888888775432
Q ss_pred eeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC
Q psy17325 279 FRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN 358 (461)
Q Consensus 279 ~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~ 358 (461)
..|++++++|+.+++|....+|. ++|.+++|||++. +..+.|+++++||+.
T Consensus 207 ---------------~~I~~~~ldG~~~~~Lt~~~~~~---~~~~g~~Iy~~~~-----------~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 207 ---------------NAIVHVNINNPNPVVLTEANIEH---YNVYGSLIFYQRG-----------GDNPALCVVKNDGTG 257 (302)
T ss_dssp ---------------TEEEEECSSSCCCEECSCSCEEE---EEEETTEEEEEEC-----------SSSCEEEEEETTSCC
T ss_pred ---------------cEEEEEECCCCCeEEEeCCCcce---EEECCCEEEEEEC-----------CCCcEEEEEECCCCc
Confidence 36999999999999888765554 7777888887522 225799999999999
Q ss_pred eEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCC
Q psy17325 359 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGR 402 (461)
Q Consensus 359 ~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~ 402 (461)
++.|.... ..+|++ .+++|||+|...+.|.++++||++.
T Consensus 258 r~~l~~~~---~~~i~i--~~d~Iy~td~~~~~i~~~~~dGs~~ 296 (302)
T 3s25_A 258 FKELAKGE---FCNINV--TSQYVYFTDFVSNKEYCTSTQNPDT 296 (302)
T ss_dssp CEEEEESC---EEEEEE--CSSEEEEEETTTCCEEEEESSSCCS
T ss_pred cEEeeCCc---cceEEE--eCCEEEEEECCCCeEEEEECCCCCc
Confidence 99988542 335555 9999999999999999999965554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-18 Score=163.60 Aligned_cols=237 Identities=14% Similarity=0.205 Sum_probs=174.9
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-----CCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-----DNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-----~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
.+..|.++++|. .++||+++...++|.+.+++|.....+.. ..+..|.+|++++..| .||+++......|.+
T Consensus 28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQI 104 (286)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEE
T ss_pred ccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEEE
Confidence 356799999996 56899999999999999999887655532 2345799999976667 899999433578999
Q ss_pred EecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 222 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 222 ~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
.+.+|.....+.......|.+|++|+ .++||+++.... .|.+.+.
T Consensus 105 ~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~~~ 149 (286)
T 1q7f_A 105 YNQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVM----------------------------------RVIIFDQ 149 (286)
T ss_dssp ECTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTT----------------------------------EEEEECT
T ss_pred ECCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECCCC----------------------------------EEEEEcC
Confidence 99888655544434556899999997 467999987663 4677777
Q ss_pred CCCceEEEEe-CCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeC-CCCCceeEEEec
Q psy17325 302 DGSNASILVS-GQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST-KIYWPNGLTLDI 377 (461)
Q Consensus 302 ~g~~~~~l~~-~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~-~l~~p~glaiD~ 377 (461)
+|.....+.. ... |++|++|+ .|+||+++.. +++|.+.+.+|.....+... .+..|.+|++|+
T Consensus 150 ~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~------------~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~ 216 (286)
T 1q7f_A 150 NGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINS 216 (286)
T ss_dssp TSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECT
T ss_pred CCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC------------CCEEEEEcCCCCEEEEEccCCccCCCcEEEECC
Confidence 7765555543 222 99999997 5779999877 67888888888765555432 367899999994
Q ss_pred CCCeEEEEcCCCC-eEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 378 ATRRVYFADSKLD-FIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 378 ~~~~ly~~d~~~~-~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
+++||+++...+ +|.+++. +|.....+...... ..|.+|++. ++.||+++. +++|++
T Consensus 217 -~G~l~v~~~~~~~~i~~~~~--~g~~~~~~~~~~~~----------~~~~~i~~~~~g~l~vs~~-~~~v~v 275 (286)
T 1q7f_A 217 -NGEILIADNHNNFNLTIFTQ--DGQLISALESKVKH----------AQCFDVALMDDGSVVLASK-DYRLYI 275 (286)
T ss_dssp -TCCEEEEECSSSCEEEEECT--TSCEEEEEEESSCC----------SCEEEEEEETTTEEEEEET-TTEEEE
T ss_pred -CCCEEEEeCCCCEEEEEECC--CCCEEEEEcccCCC----------CcceeEEECCCCcEEEECC-CCeEEE
Confidence 679999999886 9999998 67665444332111 125667665 579999985 566643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=165.15 Aligned_cols=231 Identities=21% Similarity=0.353 Sum_probs=166.3
Q ss_pred ceeeeeeeecCCeEEE-EeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYW-LDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~-~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|.++++|. .++||+ ++...++|.+.+.++.....+....+..|.+|++|+. | .||+++. ...|.+.+.+|..
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~-g--~l~v~~~--~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-G--TVYVTDF--NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTT-C--CEEEEET--TTEEEEECTTCSC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCC-C--CEEEEcC--CCEEEEEeCCCce
Confidence 899999996 457999 9999999999998776655444445568999999985 5 6999994 6799999999876
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
...+....+..|.+|++|+ .++||+++...+ .|.+.+........
T Consensus 99 ~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNN----------------------------------RVVKLAAGSKTQTV 143 (270)
T ss_dssp CEECCCCSCSSEEEEEECT-TCCEEEEEGGGT----------------------------------EEEEECTTCCSCEE
T ss_pred EeeeecCCcCCCcceEECC-CCCEEEEECCCC----------------------------------EEEEEECCCceeEe
Confidence 6555444567899999997 567999987653 35555433222222
Q ss_pred EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 309 LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 309 l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
...... |.+|++|+ .|+||+++.. +++|.+.+.++..........+..|.+|++|+ +++||+++
T Consensus 144 ~~~~~~~~p~~i~~~~-~g~l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~ 209 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDN-SGNVYVTDTD------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTE 209 (270)
T ss_dssp CCCCSCCSCCCEEECT-TCCEEEEEGG------------GTEEEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEE
T ss_pred eccccCCCceeEEEeC-CCCEEEEECC------------CCEEEEEecCCCceEeecccCCCCceEEEECC-CCCEEEEE
Confidence 222222 99999997 4569998876 67899998888766554445668899999995 56999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 387 SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 387 ~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
...+.|.+++. +|....... ..+ +..|.+|+++ ++.||+++.++++|++
T Consensus 210 ~~~~~v~~~~~--~~~~~~~~~--~~~---------~~~p~~i~~~~~g~l~v~~~~~~~v~~ 259 (270)
T 1rwi_B 210 HNTNQVVKLLA--GSTTSTVLP--FTG---------LNTPLAVAVDSDRTVYVADRGNDRVVK 259 (270)
T ss_dssp TTTSCEEEECT--TCSCCEECC--CCS---------CSCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred CCCCcEEEEcC--CCCcceeec--cCC---------CCCceeEEECCCCCEEEEECCCCEEEE
Confidence 99999999999 454422211 111 1236677775 4689999999998854
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-18 Score=165.51 Aligned_cols=256 Identities=11% Similarity=0.121 Sum_probs=172.6
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-C------------------CCCCceeEEEcCCCCceE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-D------------------NITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~------------------~~~~p~~ia~d~~~g~~~ 207 (461)
.+..|+++++|. .+++||++...++|.+.+.++...+.+.. . ....|.+|++|+..| .
T Consensus 17 ~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~ 93 (322)
T 2fp8_A 17 PSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--Q 93 (322)
T ss_dssp SSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--E
T ss_pred ccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC--c
Confidence 477899999996 47888899999999999988765444321 1 124699999998667 8
Q ss_pred EEEeecCCCCcEEEEecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCce-eeecccceeeeeccceeeeEE
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDF-IDCKSLEIKTNVNYSTIFRKL 282 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~-i~~~~~~~~~~v~~~~~~~~~ 282 (461)
||++|.. ..|.+++.++...+.+... .+..|++|++|+..++||++|..... +..... .
T Consensus 94 l~v~d~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~--------------~ 157 (322)
T 2fp8_A 94 LYIVDCY--YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ--------------I 157 (322)
T ss_dssp EEEEETT--TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH--------------H
T ss_pred EEEEECC--CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce--------------e
Confidence 9999943 4588888875444444321 34579999999746799999865310 000000 0
Q ss_pred EEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC---C
Q psy17325 283 YWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS---N 358 (461)
Q Consensus 283 yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~---~ 358 (461)
+..... .+.|++.+.++...+++..... |++|++++.++.||+++.. +++|.+.++++. .
T Consensus 158 -~~~~~~---~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~------------~~~I~~~~~~~~~~~~ 221 (322)
T 2fp8_A 158 -MDTSDK---TGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL------------SHQIVKYWLEGPKKGT 221 (322)
T ss_dssp -HHHTCC---CEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG------------GTEEEEEESSSTTTTC
T ss_pred -hcccCC---CceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCC------------CCeEEEEECCCCcCCc
Confidence 000000 0457788777655555444322 9999999988889999887 778999988863 3
Q ss_pred eEEEeeCCCCCceeEEEecCCCeEEEEcCC----------CCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEE
Q psy17325 359 RSTIISTKIYWPNGLTLDIATRRVYFADSK----------LDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALA 428 (461)
Q Consensus 359 ~~~l~~~~l~~p~glaiD~~~~~ly~~d~~----------~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (461)
.+++.. ... |.||++| .+|+||+++.. .+.|.+++. +|.....+.... +. .+..+.+
T Consensus 222 ~~~~~~-~~g-P~gi~~d-~~G~l~va~~~~~~~~~~~~~~~~v~~~d~--~G~~~~~~~~~~-g~-------~~~~~~~ 288 (322)
T 2fp8_A 222 AEVLVK-IPN-PGNIKRN-ADGHFWVSSSEELDGNMHGRVDPKGIKFDE--FGNILEVIPLPP-PF-------AGEHFEQ 288 (322)
T ss_dssp EEEEEE-CSS-EEEEEEC-TTSCEEEEEEEETTSSTTSCEEEEEEEECT--TSCEEEEEECCT-TT-------TTSCCCE
T ss_pred cceEEe-CCC-CCCeEEC-CCCCEEEEecCcccccccCCCccEEEEECC--CCCEEEEEECCC-CC-------ccccceE
Confidence 344442 223 9999999 56789999876 567889988 677654443321 11 1123566
Q ss_pred EeeeCCEEEEEeCCCcee-ecce
Q psy17325 429 LDLENGMLYYSTEGAEFL-KTPL 450 (461)
Q Consensus 429 l~~~~~~lYwtd~~~~~i-~~~~ 450 (461)
++..+++||+++..++.| ++.+
T Consensus 289 ~~~~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 289 IQEHDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEETTEEEEECSSCSEEEEEEC
T ss_pred EEEeCCEEEEeecCCCceEEEec
Confidence 777889999999888776 4443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-19 Score=176.62 Aligned_cols=225 Identities=10% Similarity=0.121 Sum_probs=157.3
Q ss_pred eeEEEecc-ccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCC----CeEEEEeCCCCcE-EEEecC
Q psy17325 116 AFLIISNR-HSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL----NRIEVCDENGTNR-IVLAKD 189 (461)
Q Consensus 116 ~~l~~~~~-~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~----~~I~~~~~~G~~~-~~l~~~ 189 (461)
..|++++. +.|+++++.+... ..+...+..|.+|++|+.++ |||+|... ..+...+.++... ...+.
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v-----~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~- 225 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYV-----DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC- 225 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEE-----EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-
T ss_pred CEEEEEeCCCCEEEEECCCCEE-----EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-
Confidence 34555554 5666776532211 12344678899999998766 99999853 2355566555443 12222
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCCcEEEEec-ccccceeEEeeccCCeeEEecCCCceeeeccc
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSNRSTIIST-KIYWPNGLTLDIATRRVYFADSKLDFIDCKSL 267 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~~~~i~~~-~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~ 267 (461)
.+..|.+|++|+..| .|||+|+ .+.+|++++.+ |...+.+... ...+|.+|++|+.+++||++|....+
T Consensus 226 ~~~~P~giavd~~~G--~lyv~d~-~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~------ 296 (433)
T 4hw6_A 226 NARGAKTCAVHPQNG--KIYYTRY-HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC------ 296 (433)
T ss_dssp ECSSBCCCEECTTTC--CEEECBT-TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE------
T ss_pred ccCCCCEEEEeCCCC--eEEEEEC-CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE------
Confidence 457899999999878 9999994 45799999998 5442344332 34467789999988889999998854
Q ss_pred ceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-----eEEEEeC--------------Ce--eeeEEE------
Q psy17325 268 EIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-----ASILVSG--------------QL--YEALAL------ 320 (461)
Q Consensus 268 ~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-----~~~l~~~--------------~~--p~~iav------ 320 (461)
|.+.++++.. ..++... .+ |.+|++
T Consensus 297 ----------------------------I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y 348 (433)
T 4hw6_A 297 ----------------------------IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAY 348 (433)
T ss_dssp ----------------------------EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGG
T ss_pred ----------------------------EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccc
Confidence 5555544321 1222221 12 999999
Q ss_pred ---eccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee----------------CCCCCceeEEEecCCCe
Q psy17325 321 ---DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS----------------TKIYWPNGLTLDIATRR 381 (461)
Q Consensus 321 ---d~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~----------------~~l~~p~glaiD~~~~~ 381 (461)
| ..+.|||+|.. +++|.+.+.+|...++... ..+.+|.||++|+.++.
T Consensus 349 ~~dd-~~g~lyvaD~~------------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ 415 (433)
T 4hw6_A 349 AGEE-DEYDFYFCDRD------------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC 415 (433)
T ss_dssp TTSS-CCEEEEEEETT------------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE
T ss_pred cccC-CCCcEEEEECC------------CCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE
Confidence 5 57889999888 8899999988844333321 13678999999988999
Q ss_pred EEEEcCCCCeEEEEEe
Q psy17325 382 VYFADSKLDFIDFCNY 397 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~ 397 (461)
||++|..+++|.++++
T Consensus 416 lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 416 FYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEEEGGGTEEEEEEE
T ss_pred EEEEeCCCCEEEEEec
Confidence 9999999999999987
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-18 Score=164.37 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=155.7
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCC--cEEEEe--------cCCCCCceeEEEcCCCCceEEEEeecCCC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT--NRIVLA--------KDNITQPRGMMLDPSPGTRWLFWTDWGEN 216 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~--~~~~l~--------~~~~~~p~~ia~d~~~g~~~ly~td~~~~ 216 (461)
.+..|.+|++|. .++||++|...++|.+.+++|. ....+. ...+..|.+|++||..| .||++|...+
T Consensus 89 ~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~~ 165 (329)
T 3fvz_A 89 LFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVFVSDGYCN 165 (329)
T ss_dssp TCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEEEEECSSC
T ss_pred ccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEEEEeCCCC
Confidence 356899999996 5669999999999999999998 344443 34566899999999778 8999993246
Q ss_pred CcEEEEecCCCCcEEEEe---------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 217 PRIERIGMDGSNRSTIIS---------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 217 ~~I~~~~~dG~~~~~i~~---------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
.+|.+.+.+|.....+.. ..+..|.+|++|+.+++||++|...+
T Consensus 166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~--------------------------- 218 (329)
T 3fvz_A 166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG--------------------------- 218 (329)
T ss_dssp CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT---------------------------
T ss_pred CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC---------------------------
Confidence 799999999876665542 23557999999987799999998874
Q ss_pred CCCCcceeeeEEeCC-CCceEEEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEEE
Q psy17325 288 GGNGVPLKIGKANMD-GSNASILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRSTI 362 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~-g~~~~~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l 362 (461)
+|.+.+++ |+....+..... |.++++.| +.+|.++.. +|.++.. ..+|...++ +|+....+
T Consensus 219 -------~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~----~~v~~~~-~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 219 -------RIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK----PYFGDQE-PVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp -------EEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC----CCTTCSC-CCCEEEEETTTCCEEEEE
T ss_pred -------EEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC----EEeccCC-CcEEEEEEcCCCeEEEEE
Confidence 46777777 666555543222 77777776 666666543 4555443 567877774 45444443
Q ss_pred e--eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecC
Q psy17325 363 I--STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDG 399 (461)
Q Consensus 363 ~--~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g 399 (461)
. ...+..|.+|++|+ ++.||++|...++|.++++++
T Consensus 285 ~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 285 KPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred cCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 2 35788899999995 459999999999999999943
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=165.46 Aligned_cols=214 Identities=16% Similarity=0.204 Sum_probs=155.3
Q ss_pred ccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCC-eEEEEeCCCCcEEEEe----cCCCCCceeEE
Q psy17325 124 HSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLN-RIEVCDENGTNRIVLA----KDNITQPRGMM 198 (461)
Q Consensus 124 ~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~-~I~~~~~~G~~~~~l~----~~~~~~p~~ia 198 (461)
+.|+++++++... ..+......|. +++++.++.|||++...+ +|.+.+.++......+ ......|.++|
T Consensus 152 ~~I~~id~~~g~~-----~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ia 225 (409)
T 3hrp_A 152 PRVRLISVDDNKV-----TTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVA 225 (409)
T ss_dssp TEEEEEETTTTEE-----EEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCE
T ss_pred CcEEEEECCCCEE-----EEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEE
Confidence 4566665543221 11233355677 999999999999998665 9999998876643333 32457799999
Q ss_pred EcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE----Eeccc-ccce-eEEeeccCCeeEEecCCCceeeecccceeee
Q psy17325 199 LDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI----ISTKI-YWPN-GLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272 (461)
Q Consensus 199 ~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i----~~~~~-~~P~-glavD~~~~~ly~~d~~~~~i~~~~~~~~~~ 272 (461)
+||..| .||+++. ..+|++.++++.....+ ..... ..|. +|++|+..++||++|....
T Consensus 226 v~p~~g--~lyv~d~--~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~------------ 289 (409)
T 3hrp_A 226 LDETEE--WLYFVDS--NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS------------ 289 (409)
T ss_dssp ECTTSS--EEEEECT--TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT------------
T ss_pred EeCCCC--eEEEEEC--CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC------------
Confidence 999888 9999883 56899999987665444 11111 2356 9999998899999998874
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC--------------e--eeeEEEeccCCeEEEeec-Cce
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ--------------L--YEALALDLENGMLYYSTL-KCT 335 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~--------------~--p~~iavd~~~~~lY~t~~-~~~ 335 (461)
+|.+.+++|.. .++.... + |.+|++|+. |+||++|. .
T Consensus 290 ----------------------~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~-- 343 (409)
T 3hrp_A 290 ----------------------SVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFK-- 343 (409)
T ss_dssp ----------------------EEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTT--
T ss_pred ----------------------EEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCC--
Confidence 57777888773 3333322 3 999999986 55999988 7
Q ss_pred eeEEEeecCCCCceEEEe-ecCCCeEEEeeC--------------CCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 336 RWLFWTDWGENPRIERIG-MDGSNRSTIIST--------------KIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 336 ~~l~~~d~~~~~~I~~~~-~dG~~~~~l~~~--------------~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+++|.+.+ .+|. ...+... .+.+|.||++|+. ++||++|...++|.++.+
T Consensus 344 ----------~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 344 ----------GYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ----------TCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred ----------CCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 88899998 4554 3333322 2788999999965 999999999999999987
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-17 Score=162.63 Aligned_cols=220 Identities=15% Similarity=0.196 Sum_probs=155.2
Q ss_pred ccceeecccccCcccccceEEEc---Cccceeeeee-------eecCCeEEEEeCCCC------eEEEEeCC--CCcE--
Q psy17325 124 HSILVADLEEKGKDHRAQDIVVS---GLDLVEGLAY-------DWIGGHIYWLDSRLN------RIEVCDEN--GTNR-- 183 (461)
Q Consensus 124 ~~I~~~~l~~~~~~~s~~~~~~~---g~~~p~~iav-------d~~~~~ly~~d~~~~------~I~~~~~~--G~~~-- 183 (461)
+.|++++++..... .+... ++..|.+|++ |..++.||++|...+ .|.+++.+ |...
T Consensus 162 ~~i~~ID~~~~~v~----~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~ 237 (496)
T 3kya_A 162 KAIQLIDLKNRMLS----SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDR 237 (496)
T ss_dssp EEEEEEETTTTEEE----EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTT
T ss_pred CeEEEEECCCCEEE----EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeec
Confidence 45667766543221 12212 4567999999 988888999999863 37777533 4543
Q ss_pred ---EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC--------CCC-----------cEEEEe-cccccc
Q psy17325 184 ---IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD--------GSN-----------RSTIIS-TKIYWP 240 (461)
Q Consensus 184 ---~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d--------G~~-----------~~~i~~-~~~~~P 240 (461)
..+. .+.+|.++++||..+ .||++++ .+.+|++.+++ |.. ...+.. ....+|
T Consensus 238 ~~~~~v~--~~~~p~giavdp~~g--~LYvtd~-~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p 312 (496)
T 3kya_A 238 SDIQLIA--AYKQCNGATIHPING--ELYFNSY-EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE 312 (496)
T ss_dssp SCEEEEE--EESCCCCEEECTTTC--CEEEEET-TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC
T ss_pred ccceeec--cCCCceEEEEcCCCC--eEEEEEC-CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc
Confidence 2332 346899999999888 9999995 45689999997 332 123332 234679
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce-----EEEEeC---
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-----SILVSG--- 312 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~-----~~l~~~--- 312 (461)
.+|++|+.++.||++|....+ |.+.++++... .++...
T Consensus 313 ~~ia~~p~G~~lYvaD~~~h~----------------------------------I~kid~dg~~~~~~~~~~~aG~~g~ 358 (496)
T 3kya_A 313 FQIFIHPTGKYAYFGVINNHY----------------------------------FMRSDYDEIKKEFITPYNFVGGYKQ 358 (496)
T ss_dssp EEEEECTTSSEEEEEETTTTE----------------------------------EEEEEEETTTTEECCCEEEEEBTTB
T ss_pred eEEEEcCCCCEEEEEeCCCCE----------------------------------EEEEecCCCcceecccEEecCCCCC
Confidence 999999988889999998854 55555555431 222221
Q ss_pred -----------Ce--ee-eEEEec------cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee--------
Q psy17325 313 -----------QL--YE-ALALDL------ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-------- 364 (461)
Q Consensus 313 -----------~~--p~-~iavd~------~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-------- 364 (461)
.+ |. ++++|. ..+.||++|.. +++|++.+.+|.-.++.-.
T Consensus 359 ~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~------------N~rIr~i~~~G~v~TiaG~g~~~~~~~ 426 (496)
T 3kya_A 359 SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL------------NFCVRKVTPEGIVSTYAGRGASTSLAD 426 (496)
T ss_dssp CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG------------GTEEEEECTTCBEEEEEESCTTHHHHH
T ss_pred CcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC------------CCEEEEEeCCCCEEEEecccccccccC
Confidence 12 99 788873 57899999988 8999999988843333221
Q ss_pred --------------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 365 --------------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 365 --------------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
..|.+|.||++|..++.||++|..+++|++++++
T Consensus 427 ~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 427 GNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp SCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 1367899999997679999999999999999993
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-16 Score=149.43 Aligned_cols=245 Identities=12% Similarity=0.109 Sum_probs=168.3
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
.++..+...+||+++++..+.|||+|...++|.+.++++.....+... ..|.+|++++. | .||++. ...|.+
T Consensus 6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~i~~~~d-G--~l~v~~---~~~l~~ 77 (297)
T 3g4e_A 6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD--APVSSVALRQS-G--GYVATI---GTKFCA 77 (297)
T ss_dssp EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECS--SCEEEEEEBTT-S--SEEEEE---TTEEEE
T ss_pred EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCC--CceEEEEECCC-C--CEEEEE---CCeEEE
Confidence 345667788999999988999999999999999999987765544332 46999999986 4 477765 358999
Q ss_pred EecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 222 IGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 222 ~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
.+.++...+.+... ....|+++++|+ .++||+++......... .+.. .+.|+
T Consensus 78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~-------------------~~~~----~~~l~ 133 (297)
T 3g4e_A 78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAV-------------------LERH----QGALY 133 (297)
T ss_dssp EETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTB-------------------CCTT----CEEEE
T ss_pred EECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccccccc-------------------ccCC----CcEEE
Confidence 99876555555432 235689999997 56788876432110000 0000 04688
Q ss_pred EEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec---CC--CeEEEee--CCCCCc
Q psy17325 298 KANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD---GS--NRSTIIS--TKIYWP 370 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d---G~--~~~~l~~--~~l~~p 370 (461)
+.+.+|....+.-....|++|+++|.++.|||+++. .++|++.+++ |. +++++.. .....|
T Consensus 134 ~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~------------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p 201 (297)
T 3g4e_A 134 SLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL------------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP 201 (297)
T ss_dssp EECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG------------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEE
T ss_pred EEECCCCEEEEeeccccccceEEcCCCCEEEEecCC------------CCcEEEEeccCCCCcccCcEEEEECCCCCCCC
Confidence 888877544433222229999999999999999887 6788888764 32 2334432 224579
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee---eCCEEEEEeCCCc
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL---ENGMLYYSTEGAE 444 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~lYwtd~~~~ 444 (461)
.||++| .+++||+++...++|.+++.+ +|.....+..... .|..+++ +.+.||+|....+
T Consensus 202 ~g~~~d-~~G~lwva~~~~~~v~~~d~~-tG~~~~~i~~p~~------------~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 202 DGMCID-AEGKLWVACYNGGRVIRLDPV-TGKRLQTVKLPVD------------KTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEEEEB-TTSCEEEEEETTTEEEEECTT-TCCEEEEEECSSS------------BEEEEEEESGGGCEEEEEEBCTT
T ss_pred CeeEEC-CCCCEEEEEcCCCEEEEEcCC-CceEEEEEECCCC------------CceEEEEeCCCCCEEEEEcCCcC
Confidence 999999 567999999988999999983 3766544432211 1455555 3469999997654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-16 Score=149.24 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=170.3
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
+...|.+|++|. .++||+++...+.|.+.+++|......+......|.+|++|+. | .||+++ .....|.+.+.+|
T Consensus 18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g--~l~v~~-~~~~~v~~~d~~g 92 (300)
T 2qc5_A 18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSL-G--DIWFTE-NGANKIGKLSKKG 92 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTT-S--CEEEEE-TTTTEEEEECTTS
T ss_pred CCCCcceeeECC-CCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCC-C--CEEEEe-cCCCeEEEECCCC
Confidence 456899999996 5789999998999999999866655444444578999999975 5 699998 4456899999886
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.............|.+|++|. .++||+++...+ .|.+.+++|+..
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~~~~g~~~ 137 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGD----------------------------------RIGKLTADGTIY 137 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTT----------------------------------EEEEECTTSCEE
T ss_pred CeEEecCCCCCCCCccceECC-CCCEEEEccCCC----------------------------------eEEEECCCCCEE
Confidence 543222222346799999995 678999987553 467777775544
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
........ |.+|++|+. ++||+++.. .+.|.+.+.+|+.........+..|.+|++|+ +++||+
T Consensus 138 ~~~~~~~~~~~~~i~~d~~-g~l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v 203 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSD-NALWFTENQ------------NNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWF 203 (300)
T ss_dssp EEECSSTTCCEEEEEECTT-SSEEEEETT------------TTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEE
T ss_pred EccCCCCCCCceeEEECCC-CCEEEEecC------------CCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEE
Confidence 33222222 999999974 559998876 67888888877655433334577899999994 679999
Q ss_pred EcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCcee-ecc
Q psy17325 385 ADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFL-KTP 449 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i-~~~ 449 (461)
++...+.|.+++. +|........ .. ...|.+|+++ ++.||+++..++.| ++.
T Consensus 204 ~~~~~~~i~~~~~--~g~~~~~~~~--~~---------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 204 VEIMGNKIGRITT--TGEISEYDIP--TP---------NARPHAITAGKNSEIWFTEWGANQIGRIT 257 (300)
T ss_dssp EETTTTEEEEECT--TCCEEEEECS--ST---------TCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred EccCCCEEEEEcC--CCcEEEEECC--CC---------CCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence 9999999999998 6665433221 11 1236778776 57899999887655 443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=153.14 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=155.4
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCC-CcEEEEecCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN-PRIERIGMDGS 227 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~-~~I~~~~~dG~ 227 (461)
..|+++++|. .++|||+|...++|.+++++|.....+... ..|.+|++++. | .||+++.+.+ .+|.+.+....
T Consensus 32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~--~~p~gia~~~d-G--~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHATVE--GKVSGLAFTSN-G--DLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEECS--SEEEEEEECTT-S--CEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceEEEEeCC--CCceeEEEcCC-C--cEEEEeccCCcceEEEEcCCCC
Confidence 5799999997 678999999999999999999755443322 46999999987 5 5999996543 35888765433
Q ss_pred CcEEEEe-cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 228 NRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 228 ~~~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
..+.+.. .....|.|++++ ..+++|++|...+ .|++.+.++...
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g----------------------------------~i~~~d~~~~~~ 150 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPL-SDTQYLTADSYRG----------------------------------AIWLIDVVQPSG 150 (306)
T ss_dssp CEEEEEECTTCSCEEEEEES-SSSEEEEEETTTT----------------------------------EEEEEETTTTEE
T ss_pred eEEEEEeCCCccccCccccc-CCCcEEEEECCCC----------------------------------eEEEEeCCCCcE
Confidence 3344433 245568899875 5778999987653 344444443211
Q ss_pred EEE----------EeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC--C--CeEEEeeCCCCCc
Q psy17325 307 SIL----------VSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG--S--NRSTIISTKIYWP 370 (461)
Q Consensus 307 ~~l----------~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG--~--~~~~l~~~~l~~p 370 (461)
++. ....+ |+|| ++.++.||+++.. +++|.++++++ + .++++. .+..|
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~------------~~~I~~~~~~~~g~~~~~~~~~--~~~~P 214 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE------------KMLLLRIPVDSTDKPGEPEIFV--EQTNI 214 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT------------TTEEEEEEBCTTSCBCCCEEEE--ESCCC
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC------------CCEEEEEEeCCCCCCCccEEEe--ccCCC
Confidence 111 01122 8998 6668899999888 88999999875 2 233333 24689
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-----CCEEEEEeCCC
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-----NGMLYYSTEGA 443 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~lYwtd~~~ 443 (461)
.||++| .+|+||+++...++|.+++. +|....+ .....+. ..|.++++. ++.||+|+..+
T Consensus 215 ~gi~vd-~dG~l~va~~~~~~V~~~~~--~G~~~~~-~~~~~~~---------~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 215 DDFAFD-VEGNLYGATHIYNSVVRIAP--DRSTTII-AQAEQGV---------IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp SSEEEB-TTCCEEEECBTTCCEEEECT--TCCEEEE-ECGGGTC---------TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCeEEC-CCCCEEEEeCCCCeEEEECC--CCCEEEE-eeccccc---------CCceEEEEecccCCCCEEEEECCCC
Confidence 999999 56799999999999999998 6765322 2211111 236677653 47999999865
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-16 Score=148.27 Aligned_cols=234 Identities=17% Similarity=0.229 Sum_probs=167.5
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
++..|.+|++| ..+++|+++...++|.+.+.+|.............|.+|++|+. | .||+++ .....|.+.+.+|
T Consensus 60 ~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g--~l~v~~-~~~~~i~~~~~~g 134 (300)
T 2qc5_A 60 PDAKVMCLIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-G--DIWFTQ-LNGDRIGKLTADG 134 (300)
T ss_dssp TTCCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECST-T--CEEEEE-TTTTEEEEECTTS
T ss_pred CCCcceeEEEC-CCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCC-C--CEEEEc-cCCCeEEEECCCC
Confidence 45679999999 46789999998999999999977654444434467999999975 6 699998 4456899999986
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.............|.+|++|+ .++||+++.... .|.+.+.+|+..
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~----------------------------------~i~~~~~~g~~~ 179 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGS-DNALWFTENQNN----------------------------------SIGRITNTGKLE 179 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECT-TSSEEEEETTTT----------------------------------EEEEECTTCCEE
T ss_pred CEEEccCCCCCCCceeEEECC-CCCEEEEecCCC----------------------------------eEEEECCCCcEE
Confidence 544322333456899999997 456999987653 467777766654
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
........ |.+|++|+ .|.||+++.. .+.|.+.+.+|.............|.+|++| .+++||+
T Consensus 180 ~~~~~~~~~~~~~i~~d~-~g~l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v 245 (300)
T 2qc5_A 180 EYPLPTNAAAPVGITSGN-DGALWFVEIM------------GNKIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWF 245 (300)
T ss_dssp EEECSSTTCCEEEEEECT-TSSEEEEETT------------TTEEEEECTTCCEEEEECSSTTCCEEEEEEC-STTCEEE
T ss_pred EeeCCCCCCCcceEEECC-CCCEEEEccC------------CCEEEEEcCCCcEEEEECCCCCCCceEEEEC-CCCCEEE
Confidence 43222222 99999997 5789998876 6688888887765554343467889999999 4578999
Q ss_pred EcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 385 ADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
++...+.|.+++. +|........ ... ..|.+|+++ ++.||+++. ++..++
T Consensus 246 ~~~~~~~i~~~~~--~g~~~~~~~~--~~~---------~~~~~i~~~~~g~l~v~~~-~~i~~~ 296 (300)
T 2qc5_A 246 TEWGANQIGRITN--DNTIQEYQLQ--TEN---------AEPHGITFGKDGSVWFALK-CKIGKL 296 (300)
T ss_dssp EETTTTEEEEECT--TSCEEEEECC--STT---------CCCCCEEECTTSCEEEECS-SEEEEE
T ss_pred eccCCCeEEEECC--CCcEEEEECC--ccC---------CccceeEeCCCCCEEEEcc-CceEEe
Confidence 9998899999998 6654322111 011 125677765 578999998 444343
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-15 Score=142.49 Aligned_cols=234 Identities=18% Similarity=0.256 Sum_probs=165.4
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
...|.++++|. .+++|+++...+.|.+.+++|......+......|.+|++|+. | .||+++ .....|.+.+.+|.
T Consensus 56 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g--~l~v~~-~~~~~i~~~d~~g~ 130 (299)
T 2z2n_A 56 DAKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-G--DIWFTE-MNGNRIGRITDDGK 130 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTT-S--CEEEEE-TTTTEEEEECTTCC
T ss_pred cCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCC-C--CEEEEe-cCCceEEEECCCCC
Confidence 45799999995 6789999998899999999877644443334567999999985 5 699998 44568999988765
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
............|.+|++|. .++||+++.... .|.+.+++|+...
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~~~~g~~~~ 175 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGS-DNALWFTENQNN----------------------------------AIGRITESGDITE 175 (299)
T ss_dssp EEEEECSSTTCCEEEEEECT-TSCEEEEETTTT----------------------------------EEEEECTTCCEEE
T ss_pred EEEecCCCCCCCCceEEEcC-CCCEEEEeCCCC----------------------------------EEEEEcCCCcEEE
Confidence 44333333456799999996 568999887553 4666666554433
Q ss_pred EEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 308 ILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 308 ~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
....... |.+|++|+. |.||+++.. .+.|.+.+.+|.............|.+|++| .+++||++
T Consensus 176 ~~~~~~~~~~~~i~~~~~-g~l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~ 241 (299)
T 2z2n_A 176 FKIPTPASGPVGITKGND-DALWFVEII------------GNKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFT 241 (299)
T ss_dssp EECSSTTCCEEEEEECTT-SSEEEEETT------------TTEEEEECTTCCEEEEECSSTTCCEEEEEEC-STTCEEEE
T ss_pred eeCCCCCCcceeEEECCC-CCEEEEccC------------CceEEEECCCCcEEEEECCCCCCCceeEEEC-CCCCEEEe
Confidence 3222222 999999975 678988765 6688888886654332233456789999999 45789999
Q ss_pred cCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 386 DSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 386 d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
+...+.|.+++. +|........ ... ..|.++++.++.||+++...+.+++
T Consensus 242 ~~~~~~i~~~d~--~g~~~~~~~~--~~~---------~~~~~i~~~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 242 EWGANKIGRLTS--NNIIEEYPIQ--IKS---------AEPHGICFDGETIWFAMECDKIGKL 291 (299)
T ss_dssp ETTTTEEEEEET--TTEEEEEECS--SSS---------CCEEEEEECSSCEEEEETTTEEEEE
T ss_pred ccCCceEEEECC--CCceEEEeCC--CCC---------CccceEEecCCCEEEEecCCcEEEE
Confidence 988899999998 5643322111 111 1256676677899999876565555
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=149.29 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=150.1
Q ss_pred cCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 146 ~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.++..|.+|++|+ .++||+++. .+.|.+.+++|.....+....+..|.+|++|+. | .||+++. ....|.+.+..
T Consensus 64 ~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~-g--~l~v~~~-~~~~i~~~~~~ 137 (270)
T 1rwi_B 64 NGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQ-G--AVYVADR-GNNRVVKLAAG 137 (270)
T ss_dssp CSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTT-C--CEEEEEG-GGTEEEEECTT
T ss_pred CCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCC-C--CEEEEEC-CCCEEEEEECC
Confidence 3556899999997 466999999 889999999998766554455578999999985 6 6999984 44688888544
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
...........+..|.+|++|+ .++||+++...+ .|.+.++++..
T Consensus 138 ~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~~~~~~~ 182 (270)
T 1rwi_B 138 SKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNN----------------------------------RVVKLEAESNN 182 (270)
T ss_dssp CCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGT----------------------------------EEEEECTTTCC
T ss_pred CceeEeeccccCCCceeEEEeC-CCCEEEEECCCC----------------------------------EEEEEecCCCc
Confidence 3333322333456899999997 557999987653 47777777765
Q ss_pred eEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEE
Q psy17325 306 ASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 306 ~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly 383 (461)
........+ |.+|++|+. |+||+++.. +++|.+.+.+|.....+....+..|.+|++|+ +++||
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~ 248 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEA-GTVYVTEHN------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVY 248 (270)
T ss_dssp EEECCCSSCCSEEEEEECTT-CCEEEEETT------------TSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEE
T ss_pred eEeecccCCCCceEEEECCC-CCEEEEECC------------CCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEE
Confidence 544333333 999999975 589998876 77899999988766554445678899999995 56899
Q ss_pred EEcCCCCeEEEEEe
Q psy17325 384 FADSKLDFIDFCNY 397 (461)
Q Consensus 384 ~~d~~~~~I~~~~~ 397 (461)
+++...++|..+++
T Consensus 249 v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 249 VADRGNDRVVKLTS 262 (270)
T ss_dssp EEEGGGTEEEEECC
T ss_pred EEECCCCEEEEEcC
Confidence 99999999999998
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-15 Score=141.58 Aligned_cols=233 Identities=17% Similarity=0.194 Sum_probs=165.4
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
....|.+|++|. .++||+++...+.|.+.+++|.............|.+|++|+. | .||+++ .....|.+.+.+|
T Consensus 13 ~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~-g--~l~v~~-~~~~~i~~~~~~g 87 (299)
T 2z2n_A 13 QDTGPYGITVSD-KGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSD-G--EVWFTE-NAANKIGRITKKG 87 (299)
T ss_dssp SSCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-S--CEEEEE-TTTTEEEEECTTS
T ss_pred cCCCccceEECC-CCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCC-C--CEEEeC-CCCCeEEEECCCC
Confidence 345799999995 6789999998899999999966544443334467999999985 5 699998 4456899999886
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.............|.+|++|+ .++||+++...+ .|.+.+++|+..
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~d~~g~~~ 132 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGN----------------------------------RIGRITDDGKIR 132 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTT----------------------------------EEEEECTTCCEE
T ss_pred cEEEEeCCCcCCCceeeEECC-CCCEEEEecCCc----------------------------------eEEEECCCCCEE
Confidence 532222222456899999996 678999886653 466777766544
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
........ |.+|++|+ .|.||+++.. .+.|.+.+.+|+............|.+|++|+ +++||+
T Consensus 133 ~~~~~~~~~~~~~i~~~~-~g~l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v 198 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGS-DNALWFTENQ------------NNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWF 198 (299)
T ss_dssp EEECSSTTCCEEEEEECT-TSCEEEEETT------------TTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEE
T ss_pred EecCCCCCCCCceEEEcC-CCCEEEEeCC------------CCEEEEEcCCCcEEEeeCCCCCCcceeEEECC-CCCEEE
Confidence 43332222 99999997 4688888765 66788888866544432334577899999994 588999
Q ss_pred EcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCcee
Q psy17325 385 ADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i 446 (461)
++...+.|.+++. +|........ . . ...|.+|+++ ++.||+++..++.|
T Consensus 199 ~~~~~~~i~~~~~--~g~~~~~~~~-~-~---------~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 199 VEIIGNKIGRITT--SGEITEFKIP-T-P---------NARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp EETTTTEEEEECT--TCCEEEEECS-S-T---------TCCEEEEEECSTTCEEEEETTTTEE
T ss_pred EccCCceEEEECC--CCcEEEEECC-C-C---------CCCceeEEECCCCCEEEeccCCceE
Confidence 9998899999998 6665332111 0 1 1236777776 57899999777655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-15 Score=142.00 Aligned_cols=253 Identities=16% Similarity=0.135 Sum_probs=163.8
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
..+..++..++|+++++.++.|||+|...++|.+.+.+|.... +.. ....|.++++|+. | .||+++ ....+|.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~-~~~-~~~~~~gl~~d~d-G--~l~v~~-~~~~~v~~ 111 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDV-LLD-ATAFTNGNAVDAQ-Q--RLVHCE-HGRRAITR 111 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEE-EEE-SCSCEEEEEECTT-S--CEEEEE-TTTTEEEE
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEE-EeC-CCCccceeeECCC-C--CEEEEE-CCCCEEEE
Confidence 3467788999999999988889999999999999999877433 322 2256999999986 5 699988 44468999
Q ss_pred EecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 222 IGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 222 ~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
.+.+|+. +.+... .+..|++|++|+ .++||++|..........+.. ..... -...|+
T Consensus 112 ~~~~g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~---------------~~~~~--~~~~v~ 172 (305)
T 3dr2_A 112 SDADGQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCP---------------ADPEL--AHHSVY 172 (305)
T ss_dssp ECTTSCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCC---------------CCCSS--SCEEEE
T ss_pred ECCCCCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccc---------------ccccc--CCCeEE
Confidence 9998763 333321 245689999997 678999885321100000000 00000 003578
Q ss_pred EEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC---eEEEeeCCCCCceeEE
Q psy17325 298 KANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN---RSTIISTKIYWPNGLT 374 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~---~~~l~~~~l~~p~gla 374 (461)
+.++++...+.+.....|++|+++|.++.|||++... ..+...+|++.++++.. .+++.......|.||+
T Consensus 173 ~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~-------~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 173 RLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPE-------QGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC----------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred EEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCC-------cCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 8887543333333222299999999988899887650 00012678888887632 3344434456799999
Q ss_pred EecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCC
Q psy17325 375 LDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442 (461)
Q Consensus 375 iD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~ 442 (461)
+| .+++||++. .+.|.+++. +|.....+.... .. ..+++..+++.||++..+
T Consensus 246 ~d-~~G~lwv~~--~~gv~~~~~--~g~~~~~~~~~~-~~----------~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 246 VD-RGGWLWSSS--GTGVCVFDS--DGQLLGHIPTPG-TA----------SNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EC-TTSCEEECC--SSEEEEECT--TSCEEEEEECSS-CC----------CEEEECTTSCEEEEEETT
T ss_pred EC-CCCCEEEec--CCcEEEECC--CCCEEEEEECCC-ce----------eEEEEeCCCCEEEEEcCC
Confidence 99 667788887 356999998 677654443221 11 134444456789998753
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-15 Score=139.16 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=164.6
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
..+..++..|+++++|+.++.|||++...++|.+.++++. .+.+.. ....|.+|++|+. | .||+++ .....|.+
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~-~~~~~~~l~~~~d-g--~l~v~~-~~~~~i~~ 94 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMH-PSHHQNGHCLNKQ-G--HLIACS-HGLRRLER 94 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEES-SCSSEEEEEECTT-C--CEEEEE-TTTTEEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEEC-CCCCcceeeECCC-C--cEEEEe-cCCCeEEE
Confidence 3466778899999999888789999999999999999988 444433 3367999999986 5 589988 44468999
Q ss_pred Eec-CCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 222 IGM-DGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 222 ~~~-dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
.+. +|. .+.+... ....|++|++|+ .++||++|.....+....+.. -..+... +.|
T Consensus 95 ~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~-------------~~~~~~~----~~l 155 (296)
T 3e5z_A 95 QREPGGE-WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYG-------------GEMELPG----RWV 155 (296)
T ss_dssp ECSTTCC-EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSC-------------CCCCSSS----CEE
T ss_pred EcCCCCc-EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCcccccccccccc-------------ccccCCC----cEE
Confidence 998 554 3333221 235689999997 678999875321100000000 0000000 357
Q ss_pred eEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec--CCC---eEEEeeCCCCCc
Q psy17325 297 GKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD--GSN---RSTIISTKIYWP 370 (461)
Q Consensus 297 ~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d--G~~---~~~l~~~~l~~p 370 (461)
++.+.+|.. +.+..... |++|+++|.++.| |++.. ..+|++.+++ |+. ..++ ......|
T Consensus 156 ~~~~~~g~~-~~~~~~~~~~~gi~~s~dg~~l-v~~~~------------~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p 220 (296)
T 3e5z_A 156 FRLAPDGTL-SAPIRDRVKPNGLAFLPSGNLL-VSDTG------------DNATHRYCLNARGETEYQGVHF-TVEPGKT 220 (296)
T ss_dssp EEECTTSCE-EEEECCCSSEEEEEECTTSCEE-EEETT------------TTEEEEEEECSSSCEEEEEEEE-CCSSSCC
T ss_pred EEECCCCCE-EEeecCCCCCccEEECCCCCEE-EEeCC------------CCeEEEEEECCCCcCcCCCeEe-eCCCCCC
Confidence 888877543 33333222 9999999988777 88877 6788888875 433 3344 4456789
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEe-eeCCEEEEEeCCCceeecc
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALD-LENGMLYYSTEGAEFLKTP 449 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~lYwtd~~~~~i~~~ 449 (461)
.+|++| .+++||++. .+.|.+++. +|.....+..... . ...++. .+++.||++.. .+.+++.
T Consensus 221 ~~i~~d-~~G~l~v~~--~~~v~~~~~--~g~~~~~~~~~~~-~----------~~~~f~~~d~~~L~v~t~-~~l~~~~ 283 (296)
T 3e5z_A 221 DGLRVD-AGGLIWASA--GDGVHVLTP--DGDELGRVLTPQT-T----------SNLCFGGPEGRTLYMTVS-TEFWSIE 283 (296)
T ss_dssp CSEEEB-TTSCEEEEE--TTEEEEECT--TSCEEEEEECSSC-C----------CEEEEESTTSCEEEEEET-TEEEEEE
T ss_pred CeEEEC-CCCCEEEEc--CCeEEEECC--CCCEEEEEECCCC-c----------eeEEEECCCCCEEEEEcC-CeEEEEE
Confidence 999999 567899998 678999999 6765444432211 1 123332 23457999875 3544443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-15 Score=144.39 Aligned_cols=262 Identities=14% Similarity=0.140 Sum_probs=162.9
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEE----ecCCCCCceeEEEcCC---CCceEEEEeecC
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVL----AKDNITQPRGMMLDPS---PGTRWLFWTDWG 214 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l----~~~~~~~p~~ia~d~~---~g~~~ly~td~~ 214 (461)
..+..++..|.+|++++. ++||+++.. ++|.+++ +|...... .......|.|||++|. ++ .||+++..
T Consensus 24 ~~va~~l~~P~~ia~~pd-G~l~V~e~~-g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g--~lYv~~~~ 98 (352)
T 2ism_A 24 EEVVGGLEVPWALAFLPD-GGMLIAERP-GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEP--YVYAYRTV 98 (352)
T ss_dssp EEEECCCSCEEEEEECTT-SCEEEEETT-TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSC--EEEEEEEE
T ss_pred EEEECCCCCceEEEEcCC-CeEEEEeCC-CeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCC--EEEEEEec
Confidence 356778999999999974 569999986 9999998 77533221 1234567999999998 78 99999842
Q ss_pred C----CCcEEEEecCCCC---cEEEEe------cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeE
Q psy17325 215 E----NPRIERIGMDGSN---RSTIIS------TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRK 281 (461)
Q Consensus 215 ~----~~~I~~~~~dG~~---~~~i~~------~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~ 281 (461)
. ..+|.|.+.++.. .++++. .....|.+|++++ .++||+++......... .
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~-~-------------- 162 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELA-Q-------------- 162 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGG-G--------------
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccc-c--------------
Confidence 2 1689999998642 233433 1234689999998 46999998643221000 0
Q ss_pred EEEEecCCCCcceeeeEEeCCC-------------CceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCC
Q psy17325 282 LYWIDEGGNGVPLKIGKANMDG-------------SNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENP 347 (461)
Q Consensus 282 ~yw~d~~~~~~~~~I~~~~~~g-------------~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~ 347 (461)
|.. ...++|.|.+++| ...+++..... |.+|++||..+.||+++.+... +-+ ....
T Consensus 163 ----d~~--~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~-~~~---~~~d 232 (352)
T 2ism_A 163 ----DLA--SLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSG-EQG---YGHD 232 (352)
T ss_dssp ----CTT--CSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC----------CCC
T ss_pred ----CCC--CCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCC-CCC---CCCe
Confidence 000 0014799999998 33444444333 9999999988999999877211 100 0011
Q ss_pred ceEEEeecC---------------CCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEcccc
Q psy17325 348 RIERIGMDG---------------SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMV 412 (461)
Q Consensus 348 ~I~~~~~dG---------------~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~ 412 (461)
+|.++...+ ....++.......|.||++ .++.||+++...++|.++++++.+....+ .....
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~-~~~~~ 309 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRV-LRVET 309 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEE-EEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE--ECCEEEEEECCCCEEEEEEECCCCcceee-cchhe
Confidence 244433211 0111111133446999999 78999999999999999999654432100 00000
Q ss_pred ceeeccCCCCCcceEEEeee-CCEEEEEeCCC
Q psy17325 413 EFTNDLMGDNGVPALALDLE-NGMLYYSTEGA 443 (461)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~ 443 (461)
.+. ....|.++++. +|.||+++++.
T Consensus 310 ~~~------~~~rp~~v~~~pdG~lyv~~~~~ 335 (352)
T 2ism_A 310 ALS------GFGRLREVQVGPDGALYVTTSNR 335 (352)
T ss_dssp EEE------SSCCEEEEEECTTSCEEEEECST
T ss_pred ecc------cCCCeeEEEECCCCcEEEEEeCC
Confidence 000 01136677765 57999999764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-14 Score=139.36 Aligned_cols=250 Identities=17% Similarity=0.195 Sum_probs=163.5
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEe-----cCCCCCceeEEEcCC---CCceEEEEeecC
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA-----KDNITQPRGMMLDPS---PGTRWLFWTDWG 214 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~-----~~~~~~p~~ia~d~~---~g~~~ly~td~~ 214 (461)
++..++..|.+|++++ .++||+++.. ++|.+++.+|. +.+. ......|.|||++|. +| .||+++..
T Consensus 23 ~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g--~lyv~~~~ 96 (354)
T 3a9g_A 23 EVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKS--WVYLYASY 96 (354)
T ss_dssp EEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSC--EEEEEEEE
T ss_pred EEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCC--EEEEEEec
Confidence 4667899999999997 5679999987 99999988886 3332 233467999999998 78 99999842
Q ss_pred --CC----CcEEEEecCCCC-----cEEEEe----cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceee
Q psy17325 215 --EN----PRIERIGMDGSN-----RSTIIS----TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIF 279 (461)
Q Consensus 215 --~~----~~I~~~~~dG~~-----~~~i~~----~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~ 279 (461)
.. .+|.|.++++.. .++++. .....|.+|++++ .++||++...........
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~------------- 162 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQ------------- 162 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGT-------------
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCcccc-------------
Confidence 12 689999988752 333433 1345689999998 568999975432110000
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCC--------ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceE
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGS--------NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIE 350 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~--------~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~ 350 (461)
|. ....++|.|.+++|+ ..+++..... |.+|++|+..+.||+++.+... ...|.
T Consensus 163 ------d~--~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~---------~dei~ 225 (354)
T 3a9g_A 163 ------DL--SSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG---------HDEVN 225 (354)
T ss_dssp ------CT--TCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSS---------CCEEE
T ss_pred ------CC--CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCC---------CcEEE
Confidence 00 001147999999997 4455544333 9999999988999999876111 01233
Q ss_pred EEeecCCC----------------eEEEee-CCCCCceeEEE-------ecCCCeEEEEcCCCCeEEEEEecCCCCeE--
Q psy17325 351 RIGMDGSN----------------RSTIIS-TKIYWPNGLTL-------DIATRRVYFADSKLDFIDFCNYDGTGRQQ-- 404 (461)
Q Consensus 351 ~~~~dG~~----------------~~~l~~-~~l~~p~glai-------D~~~~~ly~~d~~~~~I~~~~~~g~g~~~-- 404 (461)
++.. |.+ ..++.. .....|.||++ + .++.||+++...++|.+++++++|...
T Consensus 226 ~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~-~~G~l~v~~~~~~~v~~~~~~~~g~~~~~ 303 (354)
T 3a9g_A 226 IILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG-LRGWLLIACLRGSMLAAVNFGDNMEVRKI 303 (354)
T ss_dssp EECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-GTTEEEEEETTTTEEEEEEECGGGCEEEE
T ss_pred EecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-cCCcEEEEEcCCCEEEEEEECCCCcccce
Confidence 3221 111 111111 23346999999 5 678999999999999999995444321
Q ss_pred EEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCC
Q psy17325 405 VILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEG 442 (461)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~ 442 (461)
..+... ....|.++++. +|.||++++.
T Consensus 304 ~~~~~~-----------~~~rp~~v~~~pDG~lyv~~~~ 331 (354)
T 3a9g_A 304 STFFKN-----------VFGRLRDVVIDDDGGILISTSN 331 (354)
T ss_dssp EEECTT-----------TSCCEEEEEECTTSCEEEEECT
T ss_pred eeeccC-----------CCCCeeEEEECCCCcEEEEEeC
Confidence 111111 01235677665 4799999974
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-14 Score=134.25 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=150.4
Q ss_pred ccceeeeeeeecCCeEEEEeCC-CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSR-LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~-~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
+..|.+++++...++||+++.. .+.|.+.+.+|.....+.......|.+|++|+. | .||+++ ....+|.+.+.+|
T Consensus 76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g--~l~v~~-~~~~~i~~~~~~g 151 (286)
T 1q7f_A 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-G--RIIVVE-CKVMRVIIFDQNG 151 (286)
T ss_dssp BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-S--CEEEEE-TTTTEEEEECTTS
T ss_pred ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCC-C--CEEEEE-CCCCEEEEEcCCC
Confidence 4579999997678999999975 789999999998776665555678999999986 5 699999 4457899999888
Q ss_pred CCcEEEEe-cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 227 SNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 227 ~~~~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.....+.. ..+..|.+|++|+ .++||+++.... .|.+.+.+|..
T Consensus 152 ~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~----------------------------------~i~~~~~~g~~ 196 (286)
T 1q7f_A 152 NVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAH----------------------------------CVKVFNYEGQY 196 (286)
T ss_dssp CEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGT----------------------------------EEEEEETTCCE
T ss_pred CEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCC----------------------------------EEEEEcCCCCE
Confidence 65544432 3456899999997 577999987653 46777777775
Q ss_pred eEEEEeCC-e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCC-ceEEEeecCCCeEEEee-CCCCCceeEEEecCCC
Q psy17325 306 ASILVSGQ-L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENP-RIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATR 380 (461)
Q Consensus 306 ~~~l~~~~-~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~-~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~~~ 380 (461)
...+.... + |.+|++|+ .|+||+++.. ++ +|.+.+.+|.....+.. .....|.+|++|+ ++
T Consensus 197 ~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~-~g 262 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGVGINS-NGEILIADNH------------NNFNLTIFTQDGQLISALESKVKHAQCFDVALMD-DG 262 (286)
T ss_dssp EEEESCTTTSCSEEEEEECT-TCCEEEEECS------------SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEET-TT
T ss_pred EEEEccCCccCCCcEEEECC-CCCEEEEeCC------------CCEEEEEECCCCCEEEEEcccCCCCcceeEEECC-CC
Confidence 55554332 2 99999997 4688888766 54 88888888876666653 2345699999995 67
Q ss_pred eEEEEcCCCCeEEEEEe
Q psy17325 381 RVYFADSKLDFIDFCNY 397 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~ 397 (461)
+||+++. .++|..+++
T Consensus 263 ~l~vs~~-~~~v~v~~~ 278 (286)
T 1q7f_A 263 SVVLASK-DYRLYIYRY 278 (286)
T ss_dssp EEEEEET-TTEEEEEEC
T ss_pred cEEEECC-CCeEEEEEc
Confidence 8999975 678888877
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-13 Score=129.13 Aligned_cols=248 Identities=16% Similarity=0.138 Sum_probs=162.1
Q ss_pred EEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC---CCcEE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE---NPRIE 220 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~---~~~I~ 220 (461)
+..+...|+++++|. .++|||++...+.|.+.++++.....+.......|.+|++++. | .||++.... ...|.
T Consensus 40 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~d-g--~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-G--RLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-S--CEEEEECTTSSSCCEEE
T ss_pred EeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCC-C--cEEEEeCCCCCCCceEE
Confidence 344566789999995 5679999999999999998876655544333357999999987 5 588887332 15899
Q ss_pred EEecCCCCcEEEEec--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 221 RIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
+.+.++.....++.. ....|.++++|+ .++||+++.....- .. ...|++
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~------------------------~~----~~~l~~ 166 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYST------------------------NP----LGGVYY 166 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTT------------------------BC----CEEEEE
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEecccccc------------------------CC----CceEEE
Confidence 999988766544431 234799999997 56888887642000 00 035777
Q ss_pred EeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee--cCCCeEE-----Eee-CCCCC
Q psy17325 299 ANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM--DGSNRST-----IIS-TKIYW 369 (461)
Q Consensus 299 ~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~--dG~~~~~-----l~~-~~l~~ 369 (461)
.+.++...+.+..... |+++++++.++.||+++.. .+.|++.++ +|..... +.. .....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 234 (333)
T 2dg1_A 167 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT------------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEG 234 (333)
T ss_dssp ECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSE
T ss_pred EeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC------------CCeEEEEEecCCCcCcccccceEEEecCCCCC
Confidence 7777655544433222 9999999988889998876 557777777 3443221 111 22357
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
|.+|++| .+++||+++...+.|.+++. +|.....+........ . ...+..++++.+++.||++....
T Consensus 235 ~~~i~~d-~~G~l~v~~~~~~~v~~~d~--~g~~~~~~~~~~~~~g-~---~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 235 PDSCCID-SDDNLYVAMYGQGRVLVFNK--RGYPIGQILIPGRDEG-H---MLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEB-TTCCEEEEEETTTEEEEECT--TSCEEEEEECTTGGGT-C---SCBCCEEEECTTSCEEEEEEECG
T ss_pred CCceEEC-CCCCEEEEEcCCCEEEEECC--CCCEEEEEEcCCCccc-c---ccCcceEEECCCCCEEEEEeCcc
Confidence 9999999 56889999988889999998 6665444332111000 0 00112344444456899988763
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-14 Score=137.67 Aligned_cols=257 Identities=15% Similarity=0.155 Sum_probs=151.6
Q ss_pred cceeeeeeeecCCeEEEEeCC--CC--eEEEEeCCCCcEEEE------ecCCCCCceeEEEcCCCCceEEEEeecCC---
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSR--LN--RIEVCDENGTNRIVL------AKDNITQPRGMMLDPSPGTRWLFWTDWGE--- 215 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~--~~--~I~~~~~~G~~~~~l------~~~~~~~p~~ia~d~~~g~~~ly~td~~~--- 215 (461)
..|.+|++++ .+++|++... .+ +|.+++ +|... .+ ....+..|.+|++|+. | .|||+|.+.
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g--~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGLI-PFPPQSGNAIITFDTVLGIKSDGN-G--IVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEEE-ESCCCCSSCCCCCSCEEEEEECSS-S--EEEEEECHHHHT
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCee-cCCCcccCcccceeEeeEEEEcCC-C--cEEEEcCCCCcC
Confidence 5799999986 5789999753 23 788887 66422 11 1124678999999987 6 799999542
Q ss_pred -CCcEEEEecC-CCCcEEEEec-----ccccceeEEeeccCCeeEEecC---CCceeeeccccee---eeecc--ceee-
Q psy17325 216 -NPRIERIGMD-GSNRSTIIST-----KIYWPNGLTLDIATRRVYFADS---KLDFIDCKSLEIK---TNVNY--STIF- 279 (461)
Q Consensus 216 -~~~I~~~~~d-G~~~~~i~~~-----~~~~P~glavD~~~~~ly~~d~---~~~~i~~~~~~~~---~~v~~--~~~~- 279 (461)
..+|.+.++. |.....+... ....|++|++|+..+.+|++|. ....|...+.+.. +.+.. ....
T Consensus 91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 4689999987 4323333221 1236899999988889999998 5544433221110 00000 0000
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec----
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD---- 355 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d---- 355 (461)
...++.+ | ..+.....+|+.. .. ...|+||+++|.++.||+++.. ..+|++.+.+
T Consensus 171 ~~~~~~~----g--~~~~~~~~~g~~~--~~-~~~~~gia~s~dg~~ly~~~~~------------~~~l~~~~~~~~~~ 229 (343)
T 2qe8_A 171 DIDLVID----G--VPVQIGQPDGTVI--RP-HLGVNGIVLDAENEWLYLSPMH------------STSMYRIKSADLSN 229 (343)
T ss_dssp SCCCEET----T--EECBEECTTSCEE--CC-CCCEEEEEECTTSCEEEEEESS------------CSEEEEEEHHHHTC
T ss_pred ccceeEC----C--EEEEeccCCCcee--ce-ecccceeEeccCCCEEEEEeCC------------CCeEEEEEHHHhcC
Confidence 0000000 0 0011111111100 00 0118999999988889998876 5577777642
Q ss_pred CC--CeE-----EEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEE
Q psy17325 356 GS--NRS-----TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALA 428 (461)
Q Consensus 356 G~--~~~-----~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (461)
+. ..+ ... .....|.||++| .+++||+++...++|.+++.. +|....+ ... +.+ ..|.+
T Consensus 230 ~~~~~~~~~~~~~~~-g~~g~pdgia~d-~~G~l~va~~~~~~V~~~d~~-~G~~~~~-~~~-~~~---------~~p~~ 295 (343)
T 2qe8_A 230 LQLTDAELGSKIERY-SEKPICDGISID-KDHNIYVGDLAHSAIGVITSA-DRAYKLL-VTD-EKL---------SWTDS 295 (343)
T ss_dssp TTCCHHHHHTTCEEE-EECCSCSCEEEC-TTCCEEEEEGGGTEEEEEETT-TTEEEEE-EEC-GGG---------SCEEE
T ss_pred CCCChhhhhcceEec-ccCCCCceEEEC-CCCCEEEEccCCCeEEEEECC-CCCEEEE-EEC-Cce---------ecCCe
Confidence 21 110 111 233479999999 468999999999999999981 3543333 221 111 13667
Q ss_pred Eeee-CCEEEEEeCCCcee
Q psy17325 429 LDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 429 l~~~-~~~lYwtd~~~~~i 446 (461)
+++. ++.||+++...+++
T Consensus 296 va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 296 FNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEECTTSCEEEEECCGGGS
T ss_pred eEECCCCcEEEEeCccccc
Confidence 7764 57999999877654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=132.42 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=160.0
Q ss_pred EEEcCccceeeeeeeecCCeEEEE-------eCCCCeEEEEeCCCCcEEEEec----CCCCCceeEEEcCCCCceEEEEe
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWL-------DSRLNRIEVCDENGTNRIVLAK----DNITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~-------d~~~~~I~~~~~~G~~~~~l~~----~~~~~p~~ia~d~~~g~~~ly~t 211 (461)
.+..++..|+++++| ..++||++ +...+.|.+.++.......+.. .....|.+|++|+..| .||++
T Consensus 12 ~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~ 88 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVA 88 (314)
T ss_dssp EEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEE
T ss_pred hhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEE
Confidence 356788899999999 67799999 8878999999964433333322 1225699999998767 89999
Q ss_pred ecCCCCcEEEEecCCCCcEEE-Eec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 212 DWGENPRIERIGMDGSNRSTI-IST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 212 d~~~~~~I~~~~~dG~~~~~i-~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
+. . ..|.+.+.+|. ...+ ... ....|.+|++|+ .++||+++........ .. ..
T Consensus 89 ~~-~-~~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~-~~-----------------~~ 146 (314)
T 1pjx_A 89 DM-R-LGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPA-DY-----------------TR 146 (314)
T ss_dssp ET-T-TEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTS-CC-----------------CB
T ss_pred EC-C-CCEEEEeCCCC-EEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccc-cc-----------------cc
Confidence 83 2 38999998843 3333 221 234689999997 5789998864310000 00 00
Q ss_pred cCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEe----ccCCeEEEeecCceeeEEEeecCCCCceEEEeec--CCC--
Q psy17325 287 EGGNGVPLKIGKANMDGSNASILVSGQLYEALALD----LENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD--GSN-- 358 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd----~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d--G~~-- 358 (461)
........|.+.+.+|+..........|++++++ +.++.||+++.. .++|.+.+++ |+.
T Consensus 147 -~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~------------~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 147 -SMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp -TTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEE
T ss_pred -cccCCCCeEEEECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECC------------CCeEEEEECCCCCcccc
Confidence 0000003577777775433332222229999999 877788988776 6678888765 321
Q ss_pred eEEEee--CCC-CCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee--eC
Q psy17325 359 RSTIIS--TKI-YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL--EN 433 (461)
Q Consensus 359 ~~~l~~--~~l-~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~ 433 (461)
...+.. ... ..|.+|++| .+++||+++...+.|.+++.+ +|.....+.... ..+.++++ ++
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~-~g~~~~~~~~~~------------~~~~~i~~~~dg 279 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPD-GGQPKMRIRCPF------------EKPSNLHFKPQT 279 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTT-CBSCSEEEECSS------------SCEEEEEECTTS
T ss_pred ceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCC-CCcEeEEEeCCC------------CCceeEEECCCC
Confidence 112221 122 579999999 568999999888899999983 255433322111 12455655 44
Q ss_pred CEEEEEeCCCcee
Q psy17325 434 GMLYYSTEGAEFL 446 (461)
Q Consensus 434 ~~lYwtd~~~~~i 446 (461)
..||+++..++.|
T Consensus 280 ~~l~v~~~~~~~l 292 (314)
T 1pjx_A 280 KTIFVTEHENNAV 292 (314)
T ss_dssp SEEEEEETTTTEE
T ss_pred CEEEEEeCCCCeE
Confidence 4599999887655
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-14 Score=135.84 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=144.2
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec----CCCCCceeEEEcCCCCceEEEEeecCC---------
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK----DNITQPRGMMLDPSPGTRWLFWTDWGE--------- 215 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~----~~~~~p~~ia~d~~~g~~~ly~td~~~--------- 215 (461)
..|.||++|...++||++|.. +.|.++++++...+.+.. ..+..|.+|++|+..| .||++|...
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHH
T ss_pred CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccce
Confidence 469999999767899999986 458899988654444432 1245699999999446 799999542
Q ss_pred -------CCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecC
Q psy17325 216 -------NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEG 288 (461)
Q Consensus 216 -------~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~ 288 (461)
..+|++.+.++...+.+. ..+..|+||++++.++.||++|....
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~---------------------------- 207 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSH---------------------------- 207 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGT----------------------------
T ss_pred ehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCC----------------------------
Confidence 257888888754444333 45778999999988788999998764
Q ss_pred CCCcceeeeEEeCCCC---ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeC
Q psy17325 289 GNGVPLKIGKANMDGS---NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST 365 (461)
Q Consensus 289 ~~~~~~~I~~~~~~g~---~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~ 365 (461)
+|.+.++++. ..+++.....|.+|++|+ .|+||+++.....-+ ...+..++|.+.+.+|+....+...
T Consensus 208 ------~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~-~G~l~va~~~~~~~~--~~~~~~~~v~~~d~~G~~~~~~~~~ 278 (322)
T 2fp8_A 208 ------QIVKYWLEGPKKGTAEVLVKIPNPGNIKRNA-DGHFWVSSSEELDGN--MHGRVDPKGIKFDEFGNILEVIPLP 278 (322)
T ss_dssp ------EEEEEESSSTTTTCEEEEEECSSEEEEEECT-TSCEEEEEEEETTSS--TTSCEEEEEEEECTTSCEEEEEECC
T ss_pred ------eEEEEECCCCcCCccceEEeCCCCCCeEECC-CCCEEEEecCccccc--ccCCCccEEEEECCCCCEEEEEECC
Confidence 4666666652 234433311199999997 567888764200000 0001135788888888766666533
Q ss_pred C---CCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 366 K---IYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 366 ~---l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
. +..|.+++. .+++||+++...++|.+++++
T Consensus 279 ~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 279 PPFAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTTTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC-
T ss_pred CCCccccceEEEE--eCCEEEEeecCCCceEEEecc
Confidence 2 678999988 579999999999999999993
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-12 Score=121.92 Aligned_cols=231 Identities=13% Similarity=0.126 Sum_probs=158.6
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCCC--------CceeEEEcCCCCceEEEEeecCCCCcE
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNIT--------QPRGMMLDPSPGTRWLFWTDWGENPRI 219 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~~--------~p~~ia~d~~~g~~~ly~td~~~~~~I 219 (461)
..|.++++++.++.+|+++...+.|.+.++..... ..+....-. .|.+++++|..+ +||+++++....|
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVI 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceE
Confidence 35889999998889999999999999999865443 333322111 388999999977 9999996666789
Q ss_pred EEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 220 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 220 ~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
...++........+...-..|.++++++.++.||+++... .|.+.
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----------------------------------~i~~~ 211 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADG-----------------------------------ELITI 211 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTS-----------------------------------EEEEE
T ss_pred EEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCC-----------------------------------eEEEE
Confidence 9999875444333332234599999999999999988642 34445
Q ss_pred eCCCCceEEEEeC-----C-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeE
Q psy17325 300 NMDGSNASILVSG-----Q-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL 373 (461)
Q Consensus 300 ~~~g~~~~~l~~~-----~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~gl 373 (461)
++........+.. . .|.+++++|.++.||+++.. .+.|...++........+ .+..|.++
T Consensus 212 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~--~~~~~~~~ 277 (353)
T 3vgz_A 212 DTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK------------AAEVLVVDTRNGNILAKV--AAPESLAV 277 (353)
T ss_dssp ETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS------------SSEEEEEETTTCCEEEEE--ECSSCCCE
T ss_pred ECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEE--EcCCCceE
Confidence 5443322222221 1 17789999999999998776 567777776443332222 23567899
Q ss_pred EEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCC
Q psy17325 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442 (461)
Q Consensus 374 aiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~ 442 (461)
++++++++||+++...+.|..+++. ++.....+.. ... +..++++.++..||++...
T Consensus 278 ~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~-~~~----------~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 278 LFNPARNEAYVTHRQAGKVSVIDAK-SYKVVKTFDT-PTH----------PNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETT-TTEEEEEEEC-CSE----------EEEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEECCCCeEEEEECC-CCeEEEEEec-CCC----------CCeEEEcCCCCEEEEEEcc
Confidence 9998888999999989999999993 4544333322 111 1134555567789999876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-12 Score=125.49 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=157.9
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
+...+...++++++++.++.+||+|...++|.+.++++.....+... ..|.+|++++. | .++++. ...|++.
T Consensus 43 ~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~--~~v~~i~~~~d-g--~l~v~~---~~gl~~~ 114 (326)
T 2ghs_A 43 LDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP--FMGSALAKISD-S--KQLIAS---DDGLFLR 114 (326)
T ss_dssp EECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS--SCEEEEEEEET-T--EEEEEE---TTEEEEE
T ss_pred eeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECC--CcceEEEEeCC-C--eEEEEE---CCCEEEE
Confidence 34445667999999988899999999999999999987765544322 46899999986 5 577665 2369999
Q ss_pred ecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 223 GMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 223 ~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
+.++...+.+... ....|+++++|+ .++||+++.....- .. ...|++
T Consensus 115 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~------------------------~~----~~~l~~ 165 (326)
T 2ghs_A 115 DTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAE------------------------TG----AGSIYH 165 (326)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCC------------------------TT----CEEEEE
T ss_pred ECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCC------------------------CC----ceEEEE
Confidence 8876555444432 124688999997 56688876421000 00 034677
Q ss_pred EeCCCCceEEEEeC-CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec---C-C--CeEEEee--CCCCC
Q psy17325 299 ANMDGSNASILVSG-QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD---G-S--NRSTIIS--TKIYW 369 (461)
Q Consensus 299 ~~~~g~~~~~l~~~-~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d---G-~--~~~~l~~--~~l~~ 369 (461)
.+ +|+... +... ..|++|++++.++.|||++.. .++|++.+++ | . .++++.. .....
T Consensus 166 ~~-~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~ 231 (326)
T 2ghs_A 166 VA-KGKVTK-LFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG 231 (326)
T ss_dssp EE-TTEEEE-EEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE
T ss_pred Ee-CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECC------------CCEEEEEEcccccCCcccCceEEEECCCCCCC
Confidence 76 544332 2222 229999999988889998876 6678888774 4 2 2233332 23457
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee---eCCEEEEEeCCCc
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL---ENGMLYYSTEGAE 444 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~lYwtd~~~~ 444 (461)
|.|+++| .+++||++....+.|.+++. +|.....+.... ..+.++++ +++.||++....+
T Consensus 232 p~gi~~d-~~G~lwva~~~~~~v~~~d~--~g~~~~~i~~~~------------~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 232 MDGSVCD-AEGHIWNARWGEGAVDRYDT--DGNHIARYEVPG------------KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEEEEC-TTSCEEEEEETTTEEEEECT--TCCEEEEEECSC------------SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred CCeeEEC-CCCCEEEEEeCCCEEEEECC--CCCEEEEEECCC------------CCcEEEEEecCCCCEEEEEecCCC
Confidence 9999999 66799999887889999998 666544332211 11455554 3468999987764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-13 Score=130.01 Aligned_cols=236 Identities=14% Similarity=0.066 Sum_probs=152.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|.+++++ .+++|++....+.|.++++. ++....+ . ....|++|++++. | +||+++. ....|.+.++....
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~~-g--~lyv~~~-~~~~v~~iD~~t~~ 116 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFLSD-E--KAYVTQI-WDYRIFIINPKTYE 116 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEEET-T--EEEEEEB-SCSEEEEEETTTTE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEeCC-C--eEEEEEC-CCCeEEEEECCCCe
Confidence 57888886 79999999999999999987 4444444 2 3467999999765 6 8999993 35689998887543
Q ss_pred cEEEEecc-----cccceeEEeeccCCeeEEecCC-CceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 229 RSTIISTK-----IYWPNGLTLDIATRRVYFADSK-LDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 229 ~~~i~~~~-----~~~P~glavD~~~~~ly~~d~~-~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
....+..+ ...|.+|+++ +++||+++.. . +.|.+.++.
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~----------------------------------~~v~viD~~ 160 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQ----------------------------------NRILKIDTE 160 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTC----------------------------------CEEEEEETT
T ss_pred EEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCC----------------------------------CEEEEEECC
Confidence 32222221 1279999994 8999999863 4 346677765
Q ss_pred CCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeE-EEeeCCCCCceeEEEecCCC
Q psy17325 303 GSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS-TIISTKIYWPNGLTLDIATR 380 (461)
Q Consensus 303 g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~-~l~~~~l~~p~glaiD~~~~ 380 (461)
.......+.... |.+|++|+ .|++|++..+...-.-| -++.+.|++.+....... .+.......|.+|+++++++
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~--~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPY--GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSS--CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred CCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCcc--ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 443322233333 99999997 46688876540000000 001267888877543332 33222235899999998899
Q ss_pred eEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee--eCCEEEEEe----CCCcee
Q psy17325 381 RVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL--ENGMLYYST----EGAEFL 446 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~lYwtd----~~~~~i 446 (461)
+||+++. .|.++++. ++... ...... .....|.+|++ .++.||+++ ..++.|
T Consensus 238 ~lyv~~~---~v~~~d~~-t~~~~-----~~~~~~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 238 TLYWINN---DIWRMPVE-ADRVP-----VRPFLE-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp EEEEESS---SEEEEETT-CSSCC-----SSCSBC-----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred EEEEEcc---EEEEEECC-CCcee-----eeeeec-----CCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 9999986 89999983 33321 000000 00122555655 579999999 777766
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-13 Score=130.93 Aligned_cols=269 Identities=12% Similarity=0.068 Sum_probs=160.4
Q ss_pred EEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEe------cCCCCCceeEEEcCC---CCceEEEEeec
Q psy17325 143 IVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA------KDNITQPRGMMLDPS---PGTRWLFWTDW 213 (461)
Q Consensus 143 ~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~------~~~~~~p~~ia~d~~---~g~~~ly~td~ 213 (461)
++..++..|.+|++++.++.||+++.. ++|.+++.+|...+.+. ......|.+||++|. ++ +||+++.
T Consensus 12 ~va~~l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g--~lYv~~~ 88 (353)
T 2g8s_A 12 VLQDKLDHPWALAFLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSR--RIWLSYS 88 (353)
T ss_dssp EEEEEESSEEEEEECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHC--EEEEEEE
T ss_pred EEECCCCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCC--EEEEEEe
Confidence 456688999999999754449999984 89999998875432221 122345789999996 78 9999974
Q ss_pred CC------CCcEEEEecCCC-----CcEEEEec------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccc
Q psy17325 214 GE------NPRIERIGMDGS-----NRSTIIST------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYS 276 (461)
Q Consensus 214 ~~------~~~I~~~~~dG~-----~~~~i~~~------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~ 276 (461)
.. ..+|.|..+++. ..++++.. ....|.+|++++ .++||++......... .
T Consensus 89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~--~--------- 156 (353)
T 2g8s_A 89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPT--A--------- 156 (353)
T ss_dssp EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGG--G---------
T ss_pred CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCc--c---------
Confidence 21 357999988754 23444432 234588999998 5699999754321000 0
Q ss_pred eeeeEEEEEecCCCCcceeeeEEeCCCC-------------ceEEEEeCCe-eeeEEEeccCCeEEEeecCce--eeEEE
Q psy17325 277 TIFRKLYWIDEGGNGVPLKIGKANMDGS-------------NASILVSGQL-YEALALDLENGMLYYSTLKCT--RWLFW 340 (461)
Q Consensus 277 ~~~~~~yw~d~~~~~~~~~I~~~~~~g~-------------~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~--~~l~~ 340 (461)
+......++|.|.+++|+ ..++...... |.+|++|+..|.||+++.+.. ..|..
T Consensus 157 ----------q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~ 226 (353)
T 2g8s_A 157 ----------QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINI 226 (353)
T ss_dssp ----------GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEEC
T ss_pred ----------CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeE
Confidence 000001147999999987 3444444333 999999998899999987621 11111
Q ss_pred eecCCC---CceEE-Eee-------------cCCCeEEEeeCCCCCceeEEEec------CCCeEEEEcCCCCeEEEEEe
Q psy17325 341 TDWGEN---PRIER-IGM-------------DGSNRSTIISTKIYWPNGLTLDI------ATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 341 ~d~~~~---~~I~~-~~~-------------dG~~~~~l~~~~l~~p~glaiD~------~~~~ly~~d~~~~~I~~~~~ 397 (461)
...+.+ +.++- ... .+....++.......|.|+++.. ..+.||+++...++|.++++
T Consensus 227 i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~ 306 (353)
T 2g8s_A 227 PQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSV 306 (353)
T ss_dssp CCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEe
Confidence 111100 00000 000 01010111112234699999963 35899999999999999999
Q ss_pred cCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEE-eCCCcee
Q psy17325 398 DGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYS-TEGAEFL 446 (461)
Q Consensus 398 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwt-d~~~~~i 446 (461)
+ .|.. ......... .+..|.+|++. +|.||++ |..+++|
T Consensus 307 ~-~~~~-~~~~~~~~~--------~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 307 N-GDKV-TEDGRILTD--------RGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp E-TTEE-EEEEEESGG--------GCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred C-CCeE-eeeEEcccC--------CCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 5 2321 111100000 01236777765 5789996 6566755
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-12 Score=121.58 Aligned_cols=235 Identities=16% Similarity=0.125 Sum_probs=159.4
Q ss_pred ceeeeeeeecCCeEEEEeCC------CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 150 LVEGLAYDWIGGHIYWLDSR------LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~------~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
.|.++++++.++.||+++.. .+.|.+.++........+... ..|.++++++..+ ++|+++ .....|...+
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~--~l~v~~-~~~~~v~~~d 117 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQ--TLWFGN-TVNSAVTAID 117 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTT--EEEEEE-TTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCC--EEEEEe-cCCCEEEEEe
Confidence 57889999988999999976 678999998755443333322 4599999999877 899998 4456899998
Q ss_pred cCCCCcEEEEecc-c--------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 224 MDGSNRSTIISTK-I--------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 224 ~dG~~~~~i~~~~-~--------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
+........+... . ..|.++++++.+++||+++...+ +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------~ 164 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE---------------------------------S 164 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS---------------------------------C
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC---------------------------------c
Confidence 8754433333221 1 13889999998999999884321 2
Q ss_pred eeeEEeCCCCceEEEEe-CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeC----CCC
Q psy17325 295 KIGKANMDGSNASILVS-GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST----KIY 368 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~~-~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~----~l~ 368 (461)
.|.+.++........+. ... |.+++++|.++.||+++.. +.|...++........+.. ...
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------------~~i~~~d~~~~~~~~~~~~~~~~~~~ 231 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-------------GELITIDTADNKILSRKKLLDDGKEH 231 (353)
T ss_dssp EEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT-------------SEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred eEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC-------------CeEEEEECCCCeEEEEEEcCCCCCCc
Confidence 46666665444433333 233 9999999999999987653 3555555433222222211 244
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
.|.++++++.+++||+++...+.|..+++. +|.....+.... +..++++.++++||+++..++.|.
T Consensus 232 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~------------~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 232 FFINISLDTARQRAFITDSKAAEVLVVDTR-NGNILAKVAAPE------------SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp CEEEEEEETTTTEEEEEESSSSEEEEEETT-TCCEEEEEECSS------------CCCEEEETTTTEEEEEETTTTEEE
T ss_pred ccceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEEcCC------------CceEEECCCCCEEEEEECCCCeEE
Confidence 678899999999999999988999999993 455433332211 123556666778999998777663
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=125.73 Aligned_cols=213 Identities=12% Similarity=0.085 Sum_probs=142.8
Q ss_pred cCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CC----CCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DN----ITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 146 ~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~----~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
+....|.++++++. ++||+++...+.|.++++........+. .. ...|.+|+++ .+ +||+++++....|.
T Consensus 81 ~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~--~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 81 TGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GK--YVYVNCWSYQNRIL 155 (328)
T ss_dssp ECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TT--EEEEEECTTCCEEE
T ss_pred CCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CC--EEEEEcCCCCCEEE
Confidence 34678999999765 5999999778999999987655433222 21 1279999994 56 99999975456899
Q ss_pred EEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCce-eeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF-IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~-i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
++++........+.. -..|.+|++|+ .+++|++...... .. |. .. .+.|.+.
T Consensus 156 viD~~t~~~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~--------------------~~-~~----~~~v~~i 208 (328)
T 3dsm_A 156 KIDTETDKVVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSP--------------------YG-YE----APSLYRI 208 (328)
T ss_dssp EEETTTTEEEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCS--------------------SC-BC----CCEEEEE
T ss_pred EEECCCCeEEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCc--------------------cc-cC----CceEEEE
Confidence 999875333222332 34799999997 5678888765300 00 00 00 0246777
Q ss_pred eCCCCceE-EEEeC-C-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeE--EEeeCCCCCceeEE
Q psy17325 300 NMDGSNAS-ILVSG-Q-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS--TIISTKIYWPNGLT 374 (461)
Q Consensus 300 ~~~g~~~~-~l~~~-~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~--~l~~~~l~~p~gla 374 (461)
++...... .+... + .|++|+++|.++.||+++. .|++.+.+..... .++......|.||+
T Consensus 209 d~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---------------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~ 273 (328)
T 3dsm_A 209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---------------DIWRMPVEADRVPVRPFLEFRDTKYYGLT 273 (328)
T ss_dssp ETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---------------SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred ECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---------------EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence 76543332 23221 2 2999999999999998743 5666666433221 12212257899999
Q ss_pred EecCCCeEEEEc----CCCCeEEEEEecCCCCeEEEE
Q psy17325 375 LDIATRRVYFAD----SKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 375 iD~~~~~ly~~d----~~~~~I~~~~~~g~g~~~~~~ 407 (461)
+|+.+++||+++ ...++|.+++. +|.....+
T Consensus 274 vdp~~g~lyva~~~~y~~~~~V~v~d~--~g~~~~~i 308 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQQGIVYRYSP--QGKLIDEF 308 (328)
T ss_dssp ECTTTCCEEEEECTTSSSEEEEEEECT--TCCEEEEE
T ss_pred EcCCCCeEEEEcccccccCCEEEEECC--CCCEEEEE
Confidence 998899999999 77899999999 57665444
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-11 Score=118.93 Aligned_cols=250 Identities=13% Similarity=0.094 Sum_probs=162.4
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCCCCcee-EEEcCCCCceEEEEeecCCCC--cEE
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNITQPRG-MMLDPSPGTRWLFWTDWGENP--RIE 220 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~-ia~d~~~g~~~ly~td~~~~~--~I~ 220 (461)
..+...| ++++++.++.||+++...++|.+.++..... ...+... ..|.. ++++|... +||.+. .... .|.
T Consensus 37 ~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~--~l~~~~-~~~~~~~i~ 111 (331)
T 3u4y_A 37 TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-QSSMADVDITPDDQ--FAVTVT-GLNHPFNMQ 111 (331)
T ss_dssp ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-SSCCCCEEECTTSS--EEEECC-CSSSSCEEE
T ss_pred EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-CCCccceEECCCCC--EEEEec-CCCCcccEE
Confidence 3455567 9999998889999999999999999865553 3333322 45888 99999877 899544 3223 899
Q ss_pred EEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCce-eeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF-IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~-i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
..+++.......+.. -..|.++++++.++.||+++...+. |. ++..
T Consensus 112 v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~--------------------------------~~~~ 158 (331)
T 3u4y_A 112 SYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVR--------------------------------RFKI 158 (331)
T ss_dssp EEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEE--------------------------------EEEE
T ss_pred EEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEE--------------------------------EEEE
Confidence 999875544333332 3578999999988889999876543 32 2223
Q ss_pred eCCCCce---EEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe---EEEeeCCCCCcee
Q psy17325 300 NMDGSNA---SILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR---STIISTKIYWPNG 372 (461)
Q Consensus 300 ~~~g~~~---~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~---~~l~~~~l~~p~g 372 (461)
+.+|... ...+.... |.+++++|.++.||++... .+.|...++..... ...+ ..-..|.+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------------~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~ 225 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI------------GNSIGILETQNPENITLLNAV-GTNNLPGT 225 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT------------TTEEEEEECSSTTSCEEEEEE-ECSSCCCC
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC------------CCeEEEEECCCCcccceeeec-cCCCCCce
Confidence 2223221 11222222 9999999998889998776 56777777653332 2222 23478999
Q ss_pred EEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 373 LTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 373 laiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
++++++++.||++....+.|..+++. +|.. ..+......+...-........++++.++.+||++....+.|+
T Consensus 226 ~~~spdg~~l~v~~~~~~~i~~~d~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 298 (331)
T 3u4y_A 226 IVVSRDGSTVYVLTESTVDVFNFNQL-SGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK 298 (331)
T ss_dssp EEECTTSSEEEEECSSEEEEEEEETT-TTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEEcCCCEEEEEECC-CCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence 99998888899999888899999982 3443 2222111110000000000123577788889999998887764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.54 E-value=8e-12 Score=120.80 Aligned_cols=262 Identities=18% Similarity=0.139 Sum_probs=159.8
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEe------cCCCCCceeEEEcCC---CCceEEEEee
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLA------KDNITQPRGMMLDPS---PGTRWLFWTD 212 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~------~~~~~~p~~ia~d~~---~g~~~ly~td 212 (461)
.++..+|..|.+|++.+ .+.||+++...++|.+++.++...+.+. ......|.|||++|. ++ +||++.
T Consensus 25 ~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g--~lYv~y 101 (347)
T 3das_A 25 RTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH--MVYAYF 101 (347)
T ss_dssp EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC--EEEEEE
T ss_pred EEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCC--EEEEEE
Confidence 35788999999999996 4679999998899999987644433331 123456899999995 67 888864
Q ss_pred c-CCCCcEEEEecCCC--------CcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceee
Q psy17325 213 W-GENPRIERIGMDGS--------NRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIF 279 (461)
Q Consensus 213 ~-~~~~~I~~~~~dG~--------~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~ 279 (461)
. ....+|.|..+++. ..++|+.. ....+..|++++ .++||++..........
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~-------------- 166 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLS-------------- 166 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGT--------------
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccc--------------
Confidence 2 23468999998872 23455432 234567799997 56899986433211000
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCC--------ceEEEEeCCe--eeeEEEeccCCeEEEeecCce--eeEEEeecCCC-
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGS--------NASILVSGQL--YEALALDLENGMLYYSTLKCT--RWLFWTDWGEN- 346 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~--------~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~--~~l~~~d~~~~- 346 (461)
+......++|.|+++||+ ..++.. .++ |.+|++|| .|.||+++.+.. ..|.....|.+
T Consensus 167 -------qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~G~ny 237 (347)
T 3das_A 167 -------QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKPGDNY 237 (347)
T ss_dssp -------TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECTTCBC
T ss_pred -------cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcCCCEe
Confidence 000001157999999998 444444 345 99999999 689999987611 11111111100
Q ss_pred --CceEE-EeecCCCeEEE-eeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCC--eEEEEEccccceeeccCC
Q psy17325 347 --PRIER-IGMDGSNRSTI-ISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGR--QQVILIDLMVEFTNDLMG 420 (461)
Q Consensus 347 --~~I~~-~~~dG~~~~~l-~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~--~~~~~~~~~~~~~~~~~~ 420 (461)
+.++- ....+...-++ .......|.||++ .++.+|.+.....+|.++.+++.+. ....++...
T Consensus 238 GwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~--~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~--------- 306 (347)
T 3das_A 238 GWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY--AEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE--------- 306 (347)
T ss_dssp CTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE--ETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT---------
T ss_pred cCCcccCCCCCccccCCcEecCCCCCCCcceEE--EcCceeeccccCCEEEEEEecCCceecceEEeecCC---------
Confidence 00000 00001111111 1123347999999 6899999999999999999954331 111222211
Q ss_pred CCCcceEEEeee-CCEEEEEeCCC
Q psy17325 421 DNGVPALALDLE-NGMLYYSTEGA 443 (461)
Q Consensus 421 ~~~~~~~~l~~~-~~~lYwtd~~~ 443 (461)
.-.+.++++. +|.||+++.+.
T Consensus 307 --~gR~~dv~~~pDG~lyv~td~~ 328 (347)
T 3das_A 307 --YGRLRTVAPAGGDKLWLVTSNT 328 (347)
T ss_dssp --SSCEEEEEEEETTEEEEEECTT
T ss_pred --CCCccEEEECCCCcEEEEEcCC
Confidence 1125677664 68999986544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-13 Score=131.49 Aligned_cols=196 Identities=14% Similarity=0.244 Sum_probs=134.4
Q ss_pred CccceeeeeeeecCCeEEEEeCC-----CCeEEEEeCC-CCcEEEEe-cCC----CCCceeEEEcCCCCceEEEEeecC-
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSR-----LNRIEVCDEN-GTNRIVLA-KDN----ITQPRGMMLDPSPGTRWLFWTDWG- 214 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~-----~~~I~~~~~~-G~~~~~l~-~~~----~~~p~~ia~d~~~g~~~ly~td~~- 214 (461)
.+..|.+|++|.. ++|||+|.. .++|.+.++. |+....+. ... ...|.+|++|+..| .+|++|.+
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g--~~yvtd~~~ 141 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN--FVYISDPAP 141 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT--EEEEEECCS
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCC--EEEEEcCcc
Confidence 5678999999975 789999987 5899999986 54333332 111 23579999999888 99999942
Q ss_pred -CCCcEEEEecCCCCcEEEEec--------------c---------------cccceeEEeeccCCeeEEecCCCceeee
Q psy17325 215 -ENPRIERIGMDGSNRSTIIST--------------K---------------IYWPNGLTLDIATRRVYFADSKLDFIDC 264 (461)
Q Consensus 215 -~~~~I~~~~~dG~~~~~i~~~--------------~---------------~~~P~glavD~~~~~ly~~d~~~~~i~~ 264 (461)
....|.+.+++......++.. + ...|+||++++.++.||+++.....
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~--- 218 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTS--- 218 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSE---
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCe---
Confidence 446888888763322222210 0 0247999999988889999876643
Q ss_pred cccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC----CCC--------ceEEEEeCCeeeeEEEeccCCeEEEeec
Q psy17325 265 KSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM----DGS--------NASILVSGQLYEALALDLENGMLYYSTL 332 (461)
Q Consensus 265 ~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~----~g~--------~~~~l~~~~~p~~iavd~~~~~lY~t~~ 332 (461)
|++.+. ++. ....+.....|.||++|+ +|+||+++.
T Consensus 219 -------------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~ 266 (343)
T 2qe8_A 219 -------------------------------MYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDL 266 (343)
T ss_dssp -------------------------------EEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEG
T ss_pred -------------------------------EEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEcc
Confidence 333332 111 012222222399999997 588999988
Q ss_pred CceeeEEEeecCCCCceEEEee-cCCCeEEEee-CCCCCceeEEEecCCCeEEEEcCCCCeEEE
Q psy17325 333 KCTRWLFWTDWGENPRIERIGM-DGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDF 394 (461)
Q Consensus 333 ~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~d~~~~~I~~ 394 (461)
. .++|.+.+. +|+. ..++. ..+.+|.+|+++. +++||+++...+++..
T Consensus 267 ~------------~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 267 A------------HSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLHHSAP 316 (343)
T ss_dssp G------------GTEEEEEETTTTEE-EEEEECGGGSCEEEEEECT-TSCEEEEECCGGGSGG
T ss_pred C------------CCeEEEEECCCCCE-EEEEECCceecCCeeEECC-CCcEEEEeCccccccc
Confidence 7 788999998 7753 33442 3488999999995 5899999887665543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-13 Score=129.06 Aligned_cols=227 Identities=18% Similarity=0.135 Sum_probs=140.3
Q ss_pred EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEE-----ecccccceeEEeecc---CCeeEEec
Q psy17325 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTII-----STKIYWPNGLTLDIA---TRRVYFAD 256 (461)
Q Consensus 185 ~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~-----~~~~~~P~glavD~~---~~~ly~~d 256 (461)
.++...+..|++|+++|. | .||+++.. .+|.+++.+|. +.+. ..+...|.||++++. +++||+++
T Consensus 22 ~~va~~l~~P~~ia~~pd-G--~l~V~e~~--g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 22 SEVASDLEVPWSIAPLGG-G--RYLVTERP--GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp EEEECSCSCEEEEEEEET-T--EEEEEETT--TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEeCCCCCCeEEEEcCC-C--eEEEEeCC--CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 344557889999999986 6 79999943 79999987776 3332 224567999999987 79999987
Q ss_pred CC---CceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-----ceEEEEeC----Ce--eeeEEEec
Q psy17325 257 SK---LDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-----NASILVSG----QL--YEALALDL 322 (461)
Q Consensus 257 ~~---~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-----~~~~l~~~----~~--p~~iavd~ 322 (461)
.. .+.. ..+|.+.++++. ..++++.. .. +.+|+++|
T Consensus 95 ~~~~~~~~~------------------------------~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p 144 (354)
T 3a9g_A 95 SYFAEGGHI------------------------------RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP 144 (354)
T ss_dssp EEECGGGCE------------------------------EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT
T ss_pred eccCCCCCc------------------------------ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC
Confidence 63 1000 025777777665 23444331 11 88999998
Q ss_pred cCCeEEEeecCceeeEEE-eec-CCCCceEEEeecCC--------CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 323 ENGMLYYSTLKCTRWLFW-TDW-GENPRIERIGMDGS--------NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~l~~-~d~-~~~~~I~~~~~dG~--------~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
.|+||++....... .+ .|. ...++|.|++.||+ ..+++. ..+..|.||++|+.+++||++|.+.+..
T Consensus 145 -DG~Lyvt~G~~~~~-~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rnp~Gla~d~~~g~l~v~d~g~~~~ 221 (354)
T 3a9g_A 145 -DGMLYITTGDAADP-RLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-YGHRNPQGIDWHRASGVMVATEHGPVGH 221 (354)
T ss_dssp -TSCEEEECCCTTCG-GGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-ECCSCCCEEEECTTTCCEEEEECCSSSC
T ss_pred -CCcEEEEECCCCCC-ccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-EccCCcceEEEeCCCCCEEEEecCCCCC
Confidence 56899986431000 00 000 12468999999997 445554 7899999999998799999999987653
Q ss_pred EEEEecCCCCeEE---EEE-ccccceeeccC--CCCCcceEEEee--------eCCEEEEEeCCCcee-eccee
Q psy17325 393 DFCNYDGTGRQQV---ILI-DLMVEFTNDLM--GDNGVPALALDL--------ENGMLYYSTEGAEFL-KTPLF 451 (461)
Q Consensus 393 ~~~~~~g~g~~~~---~~~-~~~~~~~~~~~--~~~~~~~~~l~~--------~~~~lYwtd~~~~~i-~~~~~ 451 (461)
..++.-..|.+-- ... ....++...+. +.....|.++++ ..+.||+++...+.| ++.+.
T Consensus 222 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~ 295 (354)
T 3a9g_A 222 DEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG 295 (354)
T ss_dssp CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred cEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence 3333211232100 000 00000000000 011123677877 578999999999777 44444
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-12 Score=121.12 Aligned_cols=208 Identities=13% Similarity=0.084 Sum_probs=138.3
Q ss_pred EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceee
Q psy17325 184 IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFID 263 (461)
Q Consensus 184 ~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~ 263 (461)
+.++.....-+.|.+.++..+ .|||+| ....+|++.+.++.....+.. -..|.+|++++. ++||++..
T Consensus 5 ~~~~~~~~~~~Egp~w~~~~~--~l~~~d-~~~~~i~~~d~~~~~~~~~~~--~~~~~~i~~~~d-G~l~v~~~------ 72 (297)
T 3g4e_A 5 ECVLPENCRCGESPVWEEVSN--SLLFVD-IPAKKVCRWDSFTKQVQRVTM--DAPVSSVALRQS-GGYVATIG------ 72 (297)
T ss_dssp EEEECCCCSBEEEEEEETTTT--EEEEEE-TTTTEEEEEETTTCCEEEEEC--SSCEEEEEEBTT-SSEEEEET------
T ss_pred EEEeccCCccccCCeEECCCC--EEEEEE-CCCCEEEEEECCCCcEEEEeC--CCceEEEEECCC-CCEEEEEC------
Confidence 345555556799999999888 999999 456799999998765543322 357999999975 45777652
Q ss_pred ecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC-----e-eeeEEEeccCCeEEEeecCceee
Q psy17325 264 CKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ-----L-YEALALDLENGMLYYSTLKCTRW 337 (461)
Q Consensus 264 ~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~-----~-p~~iavd~~~~~lY~t~~~~~~~ 337 (461)
..|.+.++++...+.+.... . |+++++|+. |+||+++.....
T Consensus 73 ------------------------------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~- 120 (297)
T 3g4e_A 73 ------------------------------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEET- 120 (297)
T ss_dssp ------------------------------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCS-
T ss_pred ------------------------------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCccc-
Confidence 13677777655555554321 2 899999985 568887532000
Q ss_pred EEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec-CCCCe--EEEEEccccce
Q psy17325 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD-GTGRQ--QVILIDLMVEF 414 (461)
Q Consensus 338 l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~-g~g~~--~~~~~~~~~~~ 414 (461)
.....-...++|++.+.+|+... +. ..+..|+||+++++++.|||+|...++|.+++++ .+|.. +.++.......
T Consensus 121 ~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~ 198 (297)
T 3g4e_A 121 APAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE 198 (297)
T ss_dssp BTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG
T ss_pred ccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC
Confidence 00000012457999888875433 33 6678899999998888999999999999999985 35542 22332211111
Q ss_pred eeccCCCCCcceEEEeee-CCEEEEEeCCCcee
Q psy17325 415 TNDLMGDNGVPALALDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 415 ~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i 446 (461)
..|.+++++ +|+||++.+..+.|
T Consensus 199 ---------~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 199 ---------QIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp ---------CEEEEEEEBTTSCEEEEEETTTEE
T ss_pred ---------CCCCeeEECCCCCEEEEEcCCCEE
Confidence 125677775 57999999877655
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-12 Score=121.80 Aligned_cols=241 Identities=12% Similarity=0.075 Sum_probs=152.1
Q ss_pred CccceeeeeeeecCCeEEEEeCC--CCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSR--LNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~--~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
....|.++++++.++ ||+++.. .+.|.+.++++...+.+.. .....|.+|+++|... +||+++. ....|...
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~-~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ--LVYSANY-HKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT--EEEEEET-TTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC--EEEEEeC-CCCEEEEE
Confidence 346799999998555 9999864 6789999986654333321 2236799999999977 9999983 34566666
Q ss_pred ecC--CCCcEEEEec-----------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCC
Q psy17325 223 GMD--GSNRSTIIST-----------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGG 289 (461)
Q Consensus 223 ~~d--G~~~~~i~~~-----------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~ 289 (461)
+++ |... .+... ....|.++++++.++ ||+++...+.
T Consensus 114 ~~~~~g~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~---------------------------- 163 (347)
T 3hfq_A 114 KIAADGALT-LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDK---------------------------- 163 (347)
T ss_dssp EECTTSCEE-EEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTE----------------------------
T ss_pred EeCCCCCee-ecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCE----------------------------
Confidence 654 3322 22111 112477899998766 9999887754
Q ss_pred CCcceeeeEEeCC--CCceEEE---EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC--CCeEE
Q psy17325 290 NGVPLKIGKANMD--GSNASIL---VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG--SNRST 361 (461)
Q Consensus 290 ~~~~~~I~~~~~~--g~~~~~l---~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG--~~~~~ 361 (461)
|.+.+++ |....+. ..... |++++++|.++.||+++.. .+.|...+++. ...+.
T Consensus 164 ------v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 164 ------VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL------------SSQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp ------EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEEETTTTEEEE
T ss_pred ------EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC------------CCEEEEEEecCCCCceEE
Confidence 3333333 3322111 11122 8999999988889998776 55666666653 11111
Q ss_pred E--eeC------CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeC
Q psy17325 362 I--IST------KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLEN 433 (461)
Q Consensus 362 l--~~~------~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (461)
+ +.. ....|.++++++++++||+++...+.|..++++.+|....+......+. .+..++++.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--------~~~~~~~spdg 297 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD--------FPRDFDLDPTE 297 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS--------CCCEEEECTTS
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC--------CcCeEEECCCC
Confidence 1 111 1145889999988889999998889999999853443322211111011 12245566667
Q ss_pred CEEEEEeCCCceee
Q psy17325 434 GMLYYSTEGAEFLK 447 (461)
Q Consensus 434 ~~lYwtd~~~~~i~ 447 (461)
.+||+++..++.|+
T Consensus 298 ~~l~v~~~~~~~v~ 311 (347)
T 3hfq_A 298 AFVVVVNQNTDNAT 311 (347)
T ss_dssp SEEEEEETTTTEEE
T ss_pred CEEEEEEcCCCcEE
Confidence 78999999887664
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-11 Score=117.38 Aligned_cols=230 Identities=8% Similarity=-0.025 Sum_probs=153.6
Q ss_pred eeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc-EEEEe
Q psy17325 156 YDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR-STIIS 234 (461)
Q Consensus 156 vd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~-~~i~~ 234 (461)
++...+.+|+++...+.|.+.+++.......+......| +++++|... +||++. .....|+..++..... ...+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~--~l~~~~-~~~~~i~~~d~~~~~~~~~~~~ 80 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCS--NVVVTS-DFCQTLVQIETQLEPPKVVAIQ 80 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSC--EEEEEE-STTCEEEEEECSSSSCEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCC--EEEEEe-CCCCeEEEEECCCCceeEEecc
Confidence 445578899999999999999987555444444444557 999999877 899998 4456999999976554 33333
Q ss_pred ccccccee-EEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC
Q psy17325 235 TKIYWPNG-LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ 313 (461)
Q Consensus 235 ~~~~~P~g-lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~ 313 (461)
. ...|.. +++++.++.||........ ..|.+.+++.......+...
T Consensus 81 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~--------------------------------~~i~v~d~~~~~~~~~~~~~ 127 (331)
T 3u4y_A 81 E-GQSSMADVDITPDDQFAVTVTGLNHP--------------------------------FNMQSYSFLKNKFISTIPIP 127 (331)
T ss_dssp E-CSSCCCCEEECTTSSEEEECCCSSSS--------------------------------CEEEEEETTTTEEEEEEECC
T ss_pred c-CCCCccceEECCCCCEEEEecCCCCc--------------------------------ccEEEEECCCCCeEEEEECC
Confidence 2 456888 9999988889944433210 14666676654443333333
Q ss_pred e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCc-eEEEeecCCCe-----EEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 314 L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPR-IERIGMDGSNR-----STIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 314 ~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~-I~~~~~dG~~~-----~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
. |.+++++|.++.||+++.. ... |...+++.... ...+ .....|.++++++++++||+++
T Consensus 128 ~~~~~~~~spdg~~l~~~~~~------------~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 128 YDAVGIAISPNGNGLILIDRS------------SANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp TTEEEEEECTTSSCEEEEEET------------TTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEE
T ss_pred CCccceEECCCCCEEEEEecC------------CCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEe
Confidence 3 9999999998889988765 445 55555443221 1122 3455699999998888899999
Q ss_pred CCCCeEEEEEecCCCCe---EEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 387 SKLDFIDFCNYDGTGRQ---QVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 387 ~~~~~I~~~~~~g~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
...+.|..+++. ++.. ...+... . .+..++++.++.+||++....+.|.
T Consensus 195 ~~~~~v~v~d~~-~~~~~~~~~~~~~~---~--------~~~~~~~spdg~~l~v~~~~~~~i~ 246 (331)
T 3u4y_A 195 LIGNSIGILETQ-NPENITLLNAVGTN---N--------LPGTIVVSRDGSTVYVLTESTVDVF 246 (331)
T ss_dssp TTTTEEEEEECS-STTSCEEEEEEECS---S--------CCCCEEECTTSSEEEEECSSEEEEE
T ss_pred CCCCeEEEEECC-CCcccceeeeccCC---C--------CCceEEECCCCCEEEEEEcCCCEEE
Confidence 999999999994 4554 2222211 1 1224556666777888887766553
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=115.99 Aligned_cols=90 Identities=36% Similarity=0.784 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcccCceeeccCCccccCCC
Q psy17325 18 CPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNE 97 (461)
Q Consensus 18 C~dg~de~~~C~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~ 97 (461)
..+++.. ..|+++||..++..|.+.|.+.+++|.|.|++||.+. ++..|++++||.....|.+.|.|+.++|.|.|++
T Consensus 18 ~~~~~~~-~~Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~ 95 (107)
T 2w2n_E 18 TENLYFQ-GAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 95 (107)
T ss_dssp --CCCCS-CCBSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC---------------------------
T ss_pred cCCCcCC-CCCcCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccccccCCCCCcCCeeecCCCCEEEECCC
Confidence 4445533 5799999998888899999999999999999999874 5789999999986568999999999999999999
Q ss_pred CeeeeCCCCcee
Q psy17325 98 GYVLEYDNHTCK 109 (461)
Q Consensus 98 g~~l~~~~~~C~ 109 (461)
||.+..++++|+
T Consensus 96 Gy~~~~d~~~C~ 107 (107)
T 2w2n_E 96 GFQLDPHTKACK 107 (107)
T ss_dssp ------------
T ss_pred CceECCCCCccC
Confidence 999988887773
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-11 Score=114.05 Aligned_cols=198 Identities=12% Similarity=0.150 Sum_probs=139.4
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..+.||++|+.++.||.+....++|.+.+++|.....+...+...+.||++++. | .+++++ ....++....++...
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~-g--~~~vs~-E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGD-N--QFVISD-ERDYAIYVISLTPNS 102 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECST-T--EEEEEE-TTTTEEEEEEECTTC
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCC-C--EEEEEE-CCCCcEEEEEcCCCC
Confidence 468999999988999986666899999999998877775556678999999964 5 577776 344688887776443
Q ss_pred c-EEEEec--cc-ccc-----eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 229 R-STIIST--KI-YWP-----NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 229 ~-~~i~~~--~~-~~P-----~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
. ..+-.. .+ ..| .|||+|+.+++||.+...... .|+..
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~---------------------------------~i~~~ 149 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI---------------------------------EVYKV 149 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE---------------------------------EEEEE
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc---------------------------------eEEEE
Confidence 2 111111 11 234 899999999999998765531 23333
Q ss_pred e--CCCCceEEEEe------CCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-----
Q psy17325 300 N--MDGSNASILVS------GQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS----- 364 (461)
Q Consensus 300 ~--~~g~~~~~l~~------~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~----- 364 (461)
+ +.+....++.. ..+ +.+|++||..++||+.... +..|..++.+|..+..+..
T Consensus 150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~------------s~~L~~~d~~g~~~~~~~L~~g~~ 217 (255)
T 3qqz_A 150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE------------SRALQEVTLVGEVIGEMSLTKGSR 217 (255)
T ss_dssp ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT------------TTEEEEECTTCCEEEEEECSTTGG
T ss_pred cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC------------CCeEEEEcCCCCEEEEEEcCCccC
Confidence 3 11112222211 011 8999999999999998776 7788888888874444431
Q ss_pred ---CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 365 ---TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 365 ---~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
..+.+|.|||+| .+|+||++... +.++++..
T Consensus 218 ~l~~~~~qpEGia~d-~~G~lyIvsE~-n~~y~f~~ 251 (255)
T 3qqz_A 218 GLSHNIKQAEGVAMD-ASGNIYIVSEP-NRFYRFTP 251 (255)
T ss_dssp GCSSCCCSEEEEEEC-TTCCEEEEETT-TEEEEEEC
T ss_pred CcccccCCCCeeEEC-CCCCEEEEcCC-ceEEEEEe
Confidence 236799999999 46789999655 68999887
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-12 Score=126.62 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=134.0
Q ss_pred EcCccceeeeeeeec---CCeEEEEeCCC-----CeEEEEeCCCC---cEEEEec------CCCCCceeEEEcCCCCceE
Q psy17325 145 VSGLDLVEGLAYDWI---GGHIYWLDSRL-----NRIEVCDENGT---NRIVLAK------DNITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 145 ~~g~~~p~~iavd~~---~~~ly~~d~~~-----~~I~~~~~~G~---~~~~l~~------~~~~~p~~ia~d~~~g~~~ 207 (461)
..+...|.|||+++. ++.||+++... ++|.+.+.++. ..++++. .....|.+|+++|. | +
T Consensus 71 ~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G--~ 147 (352)
T 2ism_A 71 HRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-G--M 147 (352)
T ss_dssp CSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-S--C
T ss_pred ecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-C--C
Confidence 345678999999987 78999999864 78999998764 2233322 23457899999995 6 7
Q ss_pred EEEeecCC-------------CCcEEEEecCCCC------------cEEEEecccccceeEEeeccCCeeEEecCCCcee
Q psy17325 208 LFWTDWGE-------------NPRIERIGMDGSN------------RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262 (461)
Q Consensus 208 ly~td~~~-------------~~~I~~~~~dG~~------------~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i 262 (461)
||+++ +. ..+|.|++.+|+. ...+...++..|.||++|+.+++||++|...+.+
T Consensus 148 Lyv~~-G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~ 226 (352)
T 2ism_A 148 LYVTT-GEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGE 226 (352)
T ss_dssp EEEEC-CCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC---
T ss_pred EEEEE-CCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCC
Confidence 99997 32 2589999999831 2234556788999999999889999999876542
Q ss_pred eecccceeeeeccceeeeEEEEEecCCC-CcceeeeEEeCCCC-ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEE
Q psy17325 263 DCKSLEIKTNVNYSTIFRKLYWIDEGGN-GVPLKIGKANMDGS-NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLF 339 (461)
Q Consensus 263 ~~~~~~~~~~v~~~~~~~~~yw~d~~~~-~~~~~I~~~~~~g~-~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~ 339 (461)
.... ...|.....+.. |.+.........+. .....+.... |.||++ ..|.||+++..
T Consensus 227 ~~~~------------~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~--~~G~l~v~~~~------ 286 (352)
T 2ism_A 227 QGYG------------HDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF--FRGDLYVAGLR------ 286 (352)
T ss_dssp ---C------------CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE--ETTEEEEEETT------
T ss_pred CCCC------------CeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE--ECCEEEEEECC------
Confidence 1000 001111111111 11100000000000 1111111122 899999 47888888776
Q ss_pred EeecCCCCceEEEeecCCC-------eEEEeeCCCCCceeEEEecCCCeEEEEcCCC
Q psy17325 340 WTDWGENPRIERIGMDGSN-------RSTIISTKIYWPNGLTLDIATRRVYFADSKL 389 (461)
Q Consensus 340 ~~d~~~~~~I~~~~~dG~~-------~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~ 389 (461)
..+|.++.+++.. .+.++ .....|.+|++++ ++.||+++...
T Consensus 287 ------~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~p-dG~lyv~~~~~ 335 (352)
T 2ism_A 287 ------GQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGP-DGALYVTTSNR 335 (352)
T ss_dssp ------TTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECT-TSCEEEEECST
T ss_pred ------CCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECC-CCcEEEEEeCC
Confidence 7889999887554 23344 4567899999995 57999998753
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-11 Score=117.34 Aligned_cols=201 Identities=17% Similarity=0.163 Sum_probs=132.0
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccc
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~ 268 (461)
.....|.++++||..+ .|||++ ....+|.+.+.++. .+.+ ......|.+|++|+ .++||+++....
T Consensus 25 ~~~~~~eg~~~d~~g~--~l~~~~-~~~~~i~~~~~~~~-~~~~-~~~~~~~~~l~~~~-dg~l~v~~~~~~-------- 90 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARS--AVIFSD-VRQNRTWAWSDDGQ-LSPE-MHPSHHQNGHCLNK-QGHLIACSHGLR-------- 90 (296)
T ss_dssp CCCSSEEEEEEEGGGT--EEEEEE-GGGTEEEEEETTSC-EEEE-ESSCSSEEEEEECT-TCCEEEEETTTT--------
T ss_pred cCCccccCCeEeCCCC--EEEEEe-CCCCEEEEEECCCC-eEEE-ECCCCCcceeeECC-CCcEEEEecCCC--------
Confidence 4456799999999866 799999 45579999999987 4443 33456799999997 567888887653
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeC-CCCceEEEEe--CCe----eeeEEEeccCCeEEEeecCceeeEE-E
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM-DGSNASILVS--GQL----YEALALDLENGMLYYSTLKCTRWLF-W 340 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~-~g~~~~~l~~--~~~----p~~iavd~~~~~lY~t~~~~~~~l~-~ 340 (461)
.|.+.++ +|+. +.+.. ... |++|++|+ .|+||+|+.. .+.+- +
T Consensus 91 --------------------------~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~-~g~~~~~ 141 (296)
T 3e5z_A 91 --------------------------RLERQREPGGEW-ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPT-YGIDKPE 141 (296)
T ss_dssp --------------------------EEEEECSTTCCE-EEEECEETTEECCCCCCEEECT-TSCEEEEECS-HHHHCGG
T ss_pred --------------------------eEEEEcCCCCcE-EEEeeccCCCCCCCCCCEEECC-CCCEEEECCc-ccccccc
Confidence 4666776 4443 33321 111 78999997 5679988652 00000 0
Q ss_pred ---ee-cC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe---EEEEEcccc
Q psy17325 341 ---TD-WG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ---QVILIDLMV 412 (461)
Q Consensus 341 ---~d-~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~---~~~~~~~~~ 412 (461)
.. .. ..+.|++.+.+|+ ...+. ..+..|+||+++++++.| |++...+.|.+++++++|.. ..++ ....
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~g~-~~~~~-~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~ 217 (296)
T 3e5z_A 142 EGYGGEMELPGRWVFRLAPDGT-LSAPI-RDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEP 217 (296)
T ss_dssp GSSCCCCCSSSCEEEEECTTSC-EEEEE-CCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSS
T ss_pred ccccccccCCCcEEEEECCCCC-EEEee-cCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCC
Confidence 00 00 1357888888854 33333 778899999999776667 99999999999999545553 2333 2111
Q ss_pred ceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 413 EFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
..|.+|+++ +|.||++. ..+..++
T Consensus 218 -----------~~p~~i~~d~~G~l~v~~-~~~v~~~ 242 (296)
T 3e5z_A 218 -----------GKTDGLRVDAGGLIWASA-GDGVHVL 242 (296)
T ss_dssp -----------SCCCSEEEBTTSCEEEEE-TTEEEEE
T ss_pred -----------CCCCeEEECCCCCEEEEc-CCeEEEE
Confidence 114456655 57899998 4443344
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=118.48 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=129.5
Q ss_pred cceeeeeeeecCCeEEEEeCCCC--eEEEEeC-CCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLN--RIEVCDE-NGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~--~I~~~~~-~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..|.+|+++.. ++||++|...+ +|.+.+. +|+............|.++++.+ .+ .+|++| ....+|++.+.+
T Consensus 72 ~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~--~~~v~d-~~~g~i~~~d~~ 146 (306)
T 2p4o_A 72 GKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DT--QYLTAD-SYRGAIWLIDVV 146 (306)
T ss_dssp SEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SS--EEEEEE-TTTTEEEEEETT
T ss_pred CCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CC--cEEEEE-CCCCeEEEEeCC
Confidence 47999999964 56999996643 5888774 55543333223345688998764 46 799999 445699999987
Q ss_pred CCCcEEE-E---------ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCccee
Q psy17325 226 GSNRSTI-I---------STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295 (461)
Q Consensus 226 G~~~~~i-~---------~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~ 295 (461)
+...+.. . ...+..|+|| ++.+++||++|.... +
T Consensus 147 ~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~----------------------------------~ 190 (306)
T 2p4o_A 147 QPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKM----------------------------------L 190 (306)
T ss_dssp TTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTT----------------------------------E
T ss_pred CCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCC----------------------------------E
Confidence 5321221 1 1245679999 555789999998874 4
Q ss_pred eeEEeCCC--C--ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEE-eeCCCCCc
Q psy17325 296 IGKANMDG--S--NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTI-ISTKIYWP 370 (461)
Q Consensus 296 I~~~~~~g--~--~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l-~~~~l~~p 370 (461)
|.+.++++ + .++++.....|.+|++|+ .|+||+++.. +++|.+.+.+|+...+. +...+.+|
T Consensus 191 I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~------------~~~V~~~~~~G~~~~~~~~~~~~~~p 257 (306)
T 2p4o_A 191 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHI------------YNSVVRIAPDRSTTIIAQAEQGVIGS 257 (306)
T ss_dssp EEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBT------------TCCEEEECTTCCEEEEECGGGTCTTE
T ss_pred EEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCC------------CCeEEEECCCCCEEEEeecccccCCc
Confidence 66666653 2 234444433499999997 4688998877 78999999887653321 22457889
Q ss_pred eeEEEe---cCCCeEEEEcCCC
Q psy17325 371 NGLTLD---IATRRVYFADSKL 389 (461)
Q Consensus 371 ~glaiD---~~~~~ly~~d~~~ 389 (461)
.+++++ ++.++||+++...
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEEecccCCCCEEEEECCCC
Confidence 999998 6779999998753
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-10 Score=110.35 Aligned_cols=199 Identities=16% Similarity=0.128 Sum_probs=138.8
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCC-------CCceeEEE---cCCCCceEEEE-eec----
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNI-------TQPRGMML---DPSPGTRWLFW-TDW---- 213 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~-------~~p~~ia~---d~~~g~~~ly~-td~---- 213 (461)
-.||++++|...+.+|+++...++|.++++++.....+....+ .+|.||.+ |+. | .|++ ++.
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-g--rL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-K--RLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-C--EEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-C--cEEEEEcccccc
Confidence 3799999998899999999999999999998654444433332 25789999 787 6 6777 441
Q ss_pred -------CCCCcEEEEecC----CCCcEEEEec------------ccccceeEEeeccCCeeEEecCCC-ceeeecccce
Q psy17325 214 -------GENPRIERIGMD----GSNRSTIIST------------KIYWPNGLTLDIATRRVYFADSKL-DFIDCKSLEI 269 (461)
Q Consensus 214 -------~~~~~I~~~~~d----G~~~~~i~~~------------~~~~P~glavD~~~~~ly~~d~~~-~~i~~~~~~~ 269 (461)
.....+.+.+++ |.....+-.. ....|++|++|. .+++|+++... .
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~--------- 159 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMP--------- 159 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSC---------
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCC---------
Confidence 013679999998 4443333211 123599999996 79999998765 3
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC-----e--eeeEEEeccCCeEEEeecCceeeEEEee
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ-----L--YEALALDLENGMLYYSTLKCTRWLFWTD 342 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~-----~--p~~iavd~~~~~lY~t~~~~~~~l~~~d 342 (461)
.|.++++||+...+..... . ++||+++|.+..|++++.
T Consensus 160 -------------------------~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---------- 204 (334)
T 2p9w_A 160 -------------------------AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---------- 204 (334)
T ss_dssp -------------------------EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS----------
T ss_pred -------------------------eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC----------
Confidence 4889999999666544222 1 779999998888887765
Q ss_pred cCCCCceEEEeecCCCeEEE-ee-----CCCCCceeE-EEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 343 WGENPRIERIGMDGSNRSTI-IS-----TKIYWPNGL-TLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 343 ~~~~~~I~~~~~dG~~~~~l-~~-----~~l~~p~gl-aiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.++|.++++.-..+..+ +. ..+..|.|| ++...+.-|++++...+.+...+.|
T Consensus 205 ---~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 205 ---PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp ---SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred ---CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCC
Confidence 46788888773222112 21 146789995 7774555559999877776666663
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=116.91 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=114.2
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccc
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~ 268 (461)
.....+.|++.++..+ .|||+| ....+|++.+.+|. .+.+ ......|++|++|+ .++||+++....
T Consensus 42 ~~~~~~egp~~~~~g~--~l~~~d-~~~~~i~~~~~~g~-~~~~-~~~~~~~~gl~~d~-dG~l~v~~~~~~-------- 107 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQR--TLVWSD-LVGRRVLGWREDGT-VDVL-LDATAFTNGNAVDA-QQRLVHCEHGRR-------- 107 (305)
T ss_dssp CCCSSEEEEEEEGGGT--EEEEEE-TTTTEEEEEETTSC-EEEE-EESCSCEEEEEECT-TSCEEEEETTTT--------
T ss_pred cCCcCccCCeEeCCCC--EEEEEE-CCCCEEEEEeCCCC-EEEE-eCCCCccceeeECC-CCCEEEEECCCC--------
Confidence 3456799999999866 899999 55679999988765 3333 33456799999997 567999887652
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe--CCe----eeeEEEeccCCeEEEeecCceeeEE--E
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS--GQL----YEALALDLENGMLYYSTLKCTRWLF--W 340 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~--~~~----p~~iavd~~~~~lY~t~~~~~~~l~--~ 340 (461)
.|.+.+.+|+. +++.. ... |++|++|+ .|.||+||.. .+.+- .
T Consensus 108 --------------------------~v~~~~~~g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~-~g~~~~~~ 158 (305)
T 3dr2_A 108 --------------------------AITRSDADGQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPP-FGLRKPSQ 158 (305)
T ss_dssp --------------------------EEEEECTTSCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCS-GGGSCGGG
T ss_pred --------------------------EEEEECCCCCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcC-CCcccccc
Confidence 46777777653 33321 111 88999997 6779988752 00000 0
Q ss_pred ---eec-CCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCC-----CeEEEEEecC
Q psy17325 341 ---TDW-GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKL-----DFIDFCNYDG 399 (461)
Q Consensus 341 ---~d~-~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~-----~~I~~~~~~g 399 (461)
... .....|++.+.++...+.+. .+..|+||+++++++.|||+|... +.|.++++++
T Consensus 159 ~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 159 GCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp SCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred ccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 000 01357899888543333333 678899999998888899999874 7999999953
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-11 Score=119.05 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=111.3
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEE-ecCC------CCCceeEEEcCC---CCceEEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVL-AKDN------ITQPRGMMLDPS---PGTRWLFW 210 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l-~~~~------~~~p~~ia~d~~---~g~~~ly~ 210 (461)
.++..+|..|.+|++++ .++||+++...++|.+++.+ |....+. +... ...+.|||++|. ++ +||+
T Consensus 20 ~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g--~lYv 96 (454)
T 1cru_A 20 KVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP--YIYI 96 (454)
T ss_dssp EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC--EEEE
T ss_pred EEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCC--EEEE
Confidence 35667899999999997 56799999987889999864 5543322 2221 233559999997 78 9999
Q ss_pred eecC-------C----CCcEEEEecCCC-----CcEEEEe----cccccceeEEeeccCCeeEEecCCCceeee---ccc
Q psy17325 211 TDWG-------E----NPRIERIGMDGS-----NRSTIIS----TKIYWPNGLTLDIATRRVYFADSKLDFIDC---KSL 267 (461)
Q Consensus 211 td~~-------~----~~~I~~~~~dG~-----~~~~i~~----~~~~~P~glavD~~~~~ly~~d~~~~~i~~---~~~ 267 (461)
+... . ..+|.|..+++. ..++|+. .....+.+|++++ .++||++......... ...
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~ 175 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLP 175 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSC
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccc
Confidence 9832 0 358999988653 2344443 1345689999997 5689998543211000 000
Q ss_pred ceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-----------ceEEEEeCCe--eeeEEEeccCCeEEEeecC
Q psy17325 268 EIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-----------NASILVSGQL--YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 268 ~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-----------~~~~l~~~~~--p~~iavd~~~~~lY~t~~~ 333 (461)
...+.+..... ..-+......++|.|+++||+ ..++.. .++ |.+|++|+ .|.||+++.+
T Consensus 176 ~~~~~~p~~~~-----~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a-~G~RNp~gla~dp-~G~L~~~d~g 247 (454)
T 1cru_A 176 NQAQHTPTQQE-----LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYT-LGHRNPQGLAFTP-NGKLLQSEQG 247 (454)
T ss_dssp CCTTCCCCHHH-----HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEE-BCCSEEEEEEECT-TSCEEEEEEC
T ss_pred ccccccccccc-----ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEE-ECCCCcceEEECC-CCCEEEEecC
Confidence 00000000000 000000001157999999998 334444 344 99999999 6999999975
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-10 Score=109.54 Aligned_cols=235 Identities=13% Similarity=0.171 Sum_probs=160.7
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..|.++++.+.++.||++....+.|.+.++........+... ..+.++++.|... +||++. .....|...++....
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~--~l~~~~-~~~~~v~v~d~~~~~ 107 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGK--QVYVTN-MASSTLSVIDTTSNT 107 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS--EEEEEE-TTTTEEEEEETTTTE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCC--EEEEEE-CCCCEEEEEECCCCe
Confidence 457889999888899999988899999998655444333333 3799999999877 899987 445789999988654
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
....+.. ...|.++++++.++.||++....+ .|.+.++.......
T Consensus 108 ~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~----------------------------------~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 108 VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDK----------------------------------TVSVINTVTKAVIN 152 (391)
T ss_dssp EEEEEEC-SSSEEEEEECTTSSEEEEEETTTT----------------------------------EEEEEETTTTEEEE
T ss_pred EEEEEeC-CCCcceEEECCCCCEEEEEeCCCC----------------------------------EEEEEECCCCcEEE
Confidence 4333332 347899999998888988876653 45566655443333
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
.+.... |..++++|.++.||++... .+.|...++........+ ..-..|.++++++.+.+||++..
T Consensus 153 ~~~~~~~~~~~~~~~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 153 TVSVGRSPKGIAVTPDGTKVYVANFD------------SMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEE
T ss_pred EEecCCCcceEEECCCCCEEEEEeCC------------CCEEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEec
Confidence 333333 8999999998899888766 556666666544433333 23457899999988889999876
Q ss_pred --CCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 388 --KLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 388 --~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
..+.|...++. ++.....+.. .... ..++++.++..||++....+.|+
T Consensus 220 ~~~~~~v~~~d~~-~~~~~~~~~~-~~~~----------~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 220 DKYFNTVSMIDTG-TNKITARIPV-GPDP----------AGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp CSSCCEEEEEETT-TTEEEEEEEC-CSSE----------EEEEECTTSSEEEEEETTTTEEE
T ss_pred CcCCCcEEEEECC-CCeEEEEEec-CCCc----------cEEEEccCCCEEEEEcCCCCEEE
Confidence 67899999983 3443332222 1111 12344445667888877666664
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-11 Score=114.81 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=124.3
Q ss_pred cceeeeeeeecCCeEEEEe------------CCCCeEEEEeCCC---CcEEEEecCC-----CCCceeEEEcCC-CCceE
Q psy17325 149 DLVEGLAYDWIGGHIYWLD------------SRLNRIEVCDENG---TNRIVLAKDN-----ITQPRGMMLDPS-PGTRW 207 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d------------~~~~~I~~~~~~G---~~~~~l~~~~-----~~~p~~ia~d~~-~g~~~ 207 (461)
..||.|++++ ++.+|.+- ...++|.+.+++. +..+.-+.+. ..+|.||.+.+. .|..+
T Consensus 50 ~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 4689999986 78888885 2578999999873 3222222221 248999999663 23337
Q ss_pred EEEeecCC-CCcEEEEecCCC-CcEEEEe----cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeE
Q psy17325 208 LFWTDWGE-NPRIERIGMDGS-NRSTIIS----TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRK 281 (461)
Q Consensus 208 ly~td~~~-~~~I~~~~~dG~-~~~~i~~----~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~ 281 (461)
||+++... ..+|+...++-. ...+++. ..+..|+++++|. .+++|+++..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~----------------------- 184 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDH----------------------- 184 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESC-----------------------
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCc-----------------------
Confidence 99998442 355555555422 2333332 2567899999996 6787776531
Q ss_pred EEEEecC-------CCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEe
Q psy17325 282 LYWIDEG-------GNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353 (461)
Q Consensus 282 ~yw~d~~-------~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~ 353 (461)
|++|.. ...-.+.|++.+.. ..+++...-. |+||+++|.++.||++++. ..+|++.+
T Consensus 185 -~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~------------~~~I~~~~ 249 (355)
T 3sre_A 185 -YFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELL------------AHKIHVYE 249 (355)
T ss_dssp -SCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEE
T ss_pred -EeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCC------------CCeEEEEE
Confidence 111100 00001467777663 4445544322 9999999999999999988 77888888
Q ss_pred ecCCC----eEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 354 MDGSN----RSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 354 ~dG~~----~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
+++.. ++++ .--..|.||++|..+|+||++.
T Consensus 250 ~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 250 KHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp ECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEE
T ss_pred ECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEe
Confidence 76322 2233 2246799999994469999953
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-09 Score=105.55 Aligned_cols=244 Identities=9% Similarity=0.040 Sum_probs=151.6
Q ss_pred CccceeeeeeeecCCeEEEEeC---CCCeEEEEeCCC--CcEEEE--ecCCCCCceeEEEcCCCCceEEEEeecCCCCcE
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDS---RLNRIEVCDENG--TNRIVL--AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRI 219 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~---~~~~I~~~~~~G--~~~~~l--~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I 219 (461)
....|..+++++.++.||.++. ..+.|.+.+++. ...+.+ ....-..|..+++ ..+ +||+++. ....|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~--~l~~~~~-~~~~v 122 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK--NIVTANY-SGGSI 122 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS--EEEEEET-TTTEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC--EEEEEEC-CCCEE
Confidence 4567899999998889999998 457886655443 222222 1223357999999 334 8999983 44567
Q ss_pred EEEecC--CCCc---EEEEecc---------cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEE
Q psy17325 220 ERIGMD--GSNR---STIISTK---------IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI 285 (461)
Q Consensus 220 ~~~~~d--G~~~---~~i~~~~---------~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~ 285 (461)
...+++ |... ..+...+ ...|.++++++.++.||+++...+.|.
T Consensus 123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~---------------------- 180 (361)
T 3scy_A 123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH---------------------- 180 (361)
T ss_dssp EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE----------------------
T ss_pred EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE----------------------
Confidence 777765 3211 1111111 224578999998888999998765432
Q ss_pred ecCCCCcceeeeEEeCCCC----c-e-------EEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 286 DEGGNGVPLKIGKANMDGS----N-A-------SILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 286 d~~~~~~~~~I~~~~~~g~----~-~-------~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
++..+..+. . . ........ |++++++|.++.||+++.. .+.|...
T Consensus 181 ----------v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~------------~~~v~v~ 238 (361)
T 3scy_A 181 ----------KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI------------GGTVIAF 238 (361)
T ss_dssp ----------EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TCEEEEE
T ss_pred ----------EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC------------CCeEEEE
Confidence 222232232 1 1 11122222 9999999998899998765 5567666
Q ss_pred eecCCCeEEEe-----eCCCCCceeEEEecCCCeEEEEcCC-CCeEEEEEec-CCCCeEEEEEccccceeeccCCCCCcc
Q psy17325 353 GMDGSNRSTII-----STKIYWPNGLTLDIATRRVYFADSK-LDFIDFCNYD-GTGRQQVILIDLMVEFTNDLMGDNGVP 425 (461)
Q Consensus 353 ~~dG~~~~~l~-----~~~l~~p~glaiD~~~~~ly~~d~~-~~~I~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~ 425 (461)
+++....+.+. ......|.+|++++++++||+++.. .+.|..++++ .+|....+ .....+.. +.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~-~~~~~g~~--------~~ 309 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV-GYQLTGIH--------PR 309 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE-EEEECSSC--------CC
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe-eEecCCCC--------Cc
Confidence 66533222221 1234568899999988899999988 8888888885 23443222 11111111 22
Q ss_pred eEEEeeeCCEEEEEeCCCceeec
Q psy17325 426 ALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 426 ~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
.++++.++.+||+++..++.|++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 310 NFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp EEEECTTSCEEEEEETTTTEEEE
T ss_pred eEEECCCCCEEEEEECCCCCEEE
Confidence 45566667789999988877654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=111.30 Aligned_cols=195 Identities=16% Similarity=0.196 Sum_probs=137.5
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEE-ec----CCCCCceeEEEcCCCCceEEEEeecCC--------
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVL-AK----DNITQPRGMMLDPSPGTRWLFWTDWGE-------- 215 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l-~~----~~~~~p~~ia~d~~~g~~~ly~td~~~-------- 215 (461)
..|.++++|+.+++||+++.. +.|.+.+++|+.. .+ .. .....|.+|++|+. | .||+++...
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~g~~~-~~~~~~~~~~~~~~~~~i~~d~~-g--~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMR-LGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYE-G--NLWITAPAGEVAPADYT 145 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETT-TEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTT-S--CEEEEECBCBCTTSCCC
T ss_pred CCCceEEEecCCCcEEEEECC-CCEEEEeCCCCEE-EEEeccCCCccccCCcCEEECCC-C--CEEEEecCccccccccc
Confidence 468899999765899999975 4899999886543 33 22 12245899999986 5 699998432
Q ss_pred ------CCcEEEEecCCCCcEEEEecccccceeEEee----ccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEE
Q psy17325 216 ------NPRIERIGMDGSNRSTIISTKIYWPNGLTLD----IATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI 285 (461)
Q Consensus 216 ------~~~I~~~~~dG~~~~~i~~~~~~~P~glavD----~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~ 285 (461)
...|++.+.+|.. ..+ ......|++++++ +.++.||+++...+.
T Consensus 146 ~~~~~~~~~l~~~~~~g~~-~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~------------------------ 199 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTDGQM-IQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK------------------------ 199 (314)
T ss_dssp BTTSSSCEEEEEECTTSCE-EEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTE------------------------
T ss_pred ccccCCCCeEEEECCCCCE-EEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCe------------------------
Confidence 1579999888543 223 2346679999999 877789999877644
Q ss_pred ecCCCCcceeeeEEeCC--CCc--eEEEEeC-----CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-
Q psy17325 286 DEGGNGVPLKIGKANMD--GSN--ASILVSG-----QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD- 355 (461)
Q Consensus 286 d~~~~~~~~~I~~~~~~--g~~--~~~l~~~-----~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d- 355 (461)
|.+.+++ |+. .+++... ..|.+|++|+ .|+||+++.. .+.|.+.+.+
T Consensus 200 ----------i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~------------~~~i~~~d~~~ 256 (314)
T 1pjx_A 200 ----------LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWG------------SSHIEVFGPDG 256 (314)
T ss_dssp ----------EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEET------------TTEEEEECTTC
T ss_pred ----------EEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcC------------CCEEEEEcCCC
Confidence 3444332 211 1122221 2399999997 5788988765 6688888887
Q ss_pred CCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 356 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 356 G~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
|+....+. .....|.++++++.+++||+++...+.|.+++++
T Consensus 257 g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 257 GQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp BSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 66555544 4457899999986666699999888899999984
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-10 Score=106.67 Aligned_cols=205 Identities=12% Similarity=0.110 Sum_probs=133.6
Q ss_pred CCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeeccccee
Q psy17325 191 ITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 191 ~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
..++.||++||..+ .||... ...++|++.+++|.....+...+...+.|||++. .+++++++...+.+.
T Consensus 26 ~~~lSGla~~~~~~--~L~aV~-d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~------- 94 (255)
T 3qqz_A 26 TNNISSLTWSAQSN--TLFSTI-NKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIY------- 94 (255)
T ss_dssp CSCEEEEEEETTTT--EEEEEE-ETTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEE-------
T ss_pred ccCcceeEEeCCCC--EEEEEE-CCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEE-------
Confidence 36799999999888 899755 3478999999998766666556677899999994 667778877665432
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce--EEEE-e-----CCe-eeeEEEeccCCeEEEeecCceeeEEEe
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA--SILV-S-----GQL-YEALALDLENGMLYYSTLKCTRWLFWT 341 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~--~~l~-~-----~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~ 341 (461)
+.....++... ..+- . ... .+|||+||.++.||.+...
T Consensus 95 -------------------------~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~-------- 141 (255)
T 3qqz_A 95 -------------------------VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK-------- 141 (255)
T ss_dssp -------------------------EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--------
T ss_pred -------------------------EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--------
Confidence 11222222201 1111 0 011 5999999999999998765
Q ss_pred ecCCCC-ceEEEe--ecCCCeEEEe------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEcccc
Q psy17325 342 DWGENP-RIERIG--MDGSNRSTII------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMV 412 (461)
Q Consensus 342 d~~~~~-~I~~~~--~dG~~~~~l~------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~ 412 (461)
.+ .|++.+ +.+...+++- ...+..+.+|++|+.+++||+.....+.+..++. +|..+..+ .-..
T Consensus 142 ----~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~--~g~~~~~~-~L~~ 214 (255)
T 3qqz_A 142 ----NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL--VGEVIGEM-SLTK 214 (255)
T ss_dssp ----SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT--TCCEEEEE-ECST
T ss_pred ----CCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC--CCCEEEEE-EcCC
Confidence 23 455554 1222223321 1246679999999999999999999999999999 67754333 2222
Q ss_pred ceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeec
Q psy17325 413 EFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 413 ~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~ 448 (461)
+.. .+ ...+++|-+|+++ +|.||++.+.+-..++
T Consensus 215 g~~-~l-~~~~~qpEGia~d~~G~lyIvsE~n~~y~f 249 (255)
T 3qqz_A 215 GSR-GL-SHNIKQAEGVAMDASGNIYIVSEPNRFYRF 249 (255)
T ss_dssp TGG-GC-SSCCCSEEEEEECTTCCEEEEETTTEEEEE
T ss_pred ccC-Cc-ccccCCCCeeEECCCCCEEEEcCCceEEEE
Confidence 211 00 0123456677665 5789999888754443
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-13 Score=104.00 Aligned_cols=82 Identities=34% Similarity=0.882 Sum_probs=70.8
Q ss_pred CCCcccCCCCCC-CCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcccCceeeccCCccccC--CCCeeeeCCC
Q psy17325 29 DLAECKHKFGLC-SNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSC--NEGYVLEYDN 105 (461)
Q Consensus 29 ~~~~C~~~~~~C-~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C--~~g~~l~~~~ 105 (461)
+++||..++..| ...|.+++++|.|.|++||.+..++..|++++||. ...|.+.|.|++++|.|.| .+||.+..+.
T Consensus 2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~-~~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~ 80 (87)
T 1z6c_A 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS-ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQ 80 (87)
T ss_dssp CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHH-HSCCSSEECCCSSSCCEECCSSSCCBCCTTS
T ss_pred ccccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeC-CCCCCCEEEccCCCEEEECCCCcCCcccCCC
Confidence 357888777667 45799999999999999999888889999999996 4579999999999999999 5899888888
Q ss_pred Cceeec
Q psy17325 106 HTCKAI 111 (461)
Q Consensus 106 ~~C~~~ 111 (461)
..|.++
T Consensus 81 ~~C~di 86 (87)
T 1z6c_A 81 KSCEVV 86 (87)
T ss_dssp SSCBCC
T ss_pred CcceEC
Confidence 888765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-10 Score=107.38 Aligned_cols=242 Identities=10% Similarity=0.045 Sum_probs=153.7
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCC--CCcEEEE--ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN--GTNRIVL--AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~--G~~~~~l--~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
..|.++++++.++.||++....+.|.+.+++ +.....+ +... ..|.+++++|... +||++. .....|...++
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~--~l~~~~-~~~~~i~~~d~ 113 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQ--FVFVGS-YNAGNVSVTRL 113 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSS--EEEEEE-TTTTEEEEEEE
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCC--EEEEEe-cCCCeEEEEEC
Confidence 4688899999888899999988999997775 3332222 2222 3799999999877 899998 33456777777
Q ss_pred C-CCCcEEEE-ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 225 D-GSNRSTII-STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 225 d-G~~~~~i~-~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
+ |.....+. ......|.++++++.++.||+++...+. |.+.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~----------------------------------v~~~d~~ 159 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR----------------------------------ICLFTVS 159 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE----------------------------------EEEEEEC
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCCCE----------------------------------EEEEEec
Confidence 3 32222221 1234568999999988899998855433 4444443
Q ss_pred --CCceEE---EEe--CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC---CCe--EEEe--e---
Q psy17325 303 --GSNASI---LVS--GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG---SNR--STII--S--- 364 (461)
Q Consensus 303 --g~~~~~---l~~--~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG---~~~--~~l~--~--- 364 (461)
|+...+ ... ... |++++++|.++.||++... .+.|...+++. ... ..+. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------------NSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------------CCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 322211 111 122 8999999998889988765 45666666543 111 1111 0
Q ss_pred CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCc
Q psy17325 365 TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAE 444 (461)
Q Consensus 365 ~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~ 444 (461)
.....|.+|++++.++.||++....+.|..++++..+.....+....... .+..++++.++.+||++....+
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--------~~~~~~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--------QPRGFNVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--------SCCCEEECTTSSEEEEECTTTC
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--------ccceEEECCCCCEEEEecCCCC
Confidence 11346778999988889999998889999999942233222222111100 1224566666778999988777
Q ss_pred eeec
Q psy17325 445 FLKT 448 (461)
Q Consensus 445 ~i~~ 448 (461)
.|++
T Consensus 300 ~v~v 303 (343)
T 1ri6_A 300 HISV 303 (343)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-10 Score=112.96 Aligned_cols=226 Identities=16% Similarity=0.151 Sum_probs=140.6
Q ss_pred EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEE------ecccccceeEEeecc---CCeeEEe
Q psy17325 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTII------STKIYWPNGLTLDIA---TRRVYFA 255 (461)
Q Consensus 185 ~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~------~~~~~~P~glavD~~---~~~ly~~ 255 (461)
.++..++..|++|++.|. | .||+++ ....+|.+++.++...+.+. ..+...|.|||+++. ++.||++
T Consensus 25 ~~va~gL~~P~~ia~~pd-G--~llVte-r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPG-G--DLLVSS-RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEECCCSSEEEEEECTT-S--CEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred EEeecCCCCceEEEEcCC-C--cEEEEE-ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 345677899999999997 5 699999 33578999987644433332 124567999999984 7889886
Q ss_pred cCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC--------ceEEEEeCC----e--eeeEEEe
Q psy17325 256 DSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS--------NASILVSGQ----L--YEALALD 321 (461)
Q Consensus 256 d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~--------~~~~l~~~~----~--p~~iavd 321 (461)
.+.... .+|.|..+++. ..++|+... . ...|+++
T Consensus 101 yt~~~~--------------------------------~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg 148 (347)
T 3das_A 101 FTSASD--------------------------------NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG 148 (347)
T ss_dssp EECSSS--------------------------------EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC
T ss_pred EecCCC--------------------------------CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC
Confidence 432211 45777777762 245554321 1 6779999
Q ss_pred ccCCeEEEeecCceeeEEEeec-CCCCceEEEeecCC--------CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC--
Q psy17325 322 LENGMLYYSTLKCTRWLFWTDW-GENPRIERIGMDGS--------NRSTIISTKIYWPNGLTLDIATRRVYFADSKLD-- 390 (461)
Q Consensus 322 ~~~~~lY~t~~~~~~~l~~~d~-~~~~~I~~~~~dG~--------~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~-- 390 (461)
| .|+||++.......---.|. ...++|.|++.||+ ..+++. ..+.+|.||++|+ +++||++|.+.+
T Consensus 149 p-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RNp~Gla~dp-~G~L~~~d~g~~~~ 225 (347)
T 3das_A 149 P-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHRNVQGLAWDD-KQRLFASEFGQDTW 225 (347)
T ss_dssp T-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCSBCCEEEECT-TCCEEEEECCSSSC
T ss_pred C-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCCCcceEEECC-CCCEEEEecCCCCC
Confidence 8 46899985320000000000 12579999999998 444444 8999999999997 699999998764
Q ss_pred -eEEEEEecCCCCeEEE-EEccc---cceeeccC--CCCCcceEEEeeeCCEEEEEeCCCcee-ecceeE
Q psy17325 391 -FIDFCNYDGTGRQQVI-LIDLM---VEFTNDLM--GDNGVPALALDLENGMLYYSTEGAEFL-KTPLFC 452 (461)
Q Consensus 391 -~I~~~~~~g~g~~~~~-~~~~~---~~~~~~~~--~~~~~~~~~l~~~~~~lYwtd~~~~~i-~~~~~~ 452 (461)
.|.++.. |.+--. ..... .++...+. ++....|.+|+++++.+|.+....+.| |+++.+
T Consensus 226 deln~i~~---G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 226 DELNAIKP---GDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp EEEEEECT---TCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEET
T ss_pred ceeeEEcC---CCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecC
Confidence 3444432 332100 00000 00000000 011124789999999999999988666 666653
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-13 Score=102.21 Aligned_cols=80 Identities=35% Similarity=0.757 Sum_probs=67.8
Q ss_pred CCCcccCCCCCCCC-CceeCCCCceEeCCCCCeec-CCCCceecCcceec-CCccc-CceeeccCCccccCCCCeeeeCC
Q psy17325 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILS-NDSVTCQDMNECEQ-PGYCS-QMCTNTKGSYICSCNEGYVLEYD 104 (461)
Q Consensus 29 ~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~-~~~~~C~d~~eC~~-~~~C~-~~C~~~~g~~~C~C~~g~~l~~~ 104 (461)
+++||..++..|.+ .|++++++|.|.|++||.+. .++..|++++||.. +..|. +.|.|+.++|.|.|++||.+..+
T Consensus 2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~ 81 (86)
T 1lmj_A 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPN 81 (86)
T ss_dssp CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSS
T ss_pred ccccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCC
Confidence 46788877777865 79999999999999999864 35789999999974 34576 58999999999999999999888
Q ss_pred CCce
Q psy17325 105 NHTC 108 (461)
Q Consensus 105 ~~~C 108 (461)
+++|
T Consensus 82 ~~~C 85 (86)
T 1lmj_A 82 ISAC 85 (86)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8777
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-10 Score=106.61 Aligned_cols=237 Identities=12% Similarity=0.146 Sum_probs=145.6
Q ss_pred CCeEEEEeCCCCeEEEEeCC--CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC--CCCcEEEEe-
Q psy17325 160 GGHIYWLDSRLNRIEVCDEN--GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD--GSNRSTIIS- 234 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~--G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d--G~~~~~i~~- 234 (461)
.+.+|+++...+.|.+.+++ |.............|.+++++|... +||++.. ....|...+++ +...+.+..
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR--YLYVGVR-PEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS--EEEEEET-TTTEEEEEEECTTTCCEEEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCC--EEEEeec-CCCeEEEEEecCCCCceeecccc
Confidence 45788888888999999876 4433222222335799999999877 8999983 33677776766 333332211
Q ss_pred cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC-CCCceEEEE--e
Q psy17325 235 TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM-DGSNASILV--S 311 (461)
Q Consensus 235 ~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~-~g~~~~~l~--~ 311 (461)
.....|.++++++.++.||++....+.| .+.++ +|...+.+. .
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i----------------------------------~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNV----------------------------------SVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEE----------------------------------EEEEEETTEEEEEEEEEC
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeE----------------------------------EEEECCCCcccccccccc
Confidence 1123799999999888899988765433 33333 333222222 2
Q ss_pred CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC--CCeE----EEeeCCCCCceeEEEecCCCeEEE
Q psy17325 312 GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG--SNRS----TIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 312 ~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG--~~~~----~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
... |.+++++|.+..||+++.. .++|...+++. +... .+....-..|.++++++.+++||+
T Consensus 127 ~~~~~~~~~~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~ 194 (343)
T 1ri6_A 127 GLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 194 (343)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred CCCCceEEEECCCCCEEEEecCC------------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEE
Confidence 122 8999999998899988755 45666666653 2221 122123457999999988888999
Q ss_pred EcCCCCeEEEEEecC-CCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 385 ADSKLDFIDFCNYDG-TGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
++...+.|..++++. +|........ ........+...+..++++.++.+||++....+.|+
T Consensus 195 ~~~~~~~i~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~ 256 (343)
T 1ri6_A 195 VNELNSSVDVWELKDPHGNIECVQTL--DMMPENFSDTRWAADIHITPDGRHLYACDRTASLIT 256 (343)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEE--ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EeCCCCEEEEEEecCCCCcEEEEeec--cccCccccccCCccceEECCCCCEEEEEecCCCEEE
Confidence 998889999999853 3332211110 001100000111112445555678999998777664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-11 Score=115.61 Aligned_cols=215 Identities=15% Similarity=0.171 Sum_probs=138.0
Q ss_pred cCccceeeeeeeec---CCeEEEEeCC-------CCeEEEEeCCCC-----cEEEEec------CCCCCceeEEEcCCCC
Q psy17325 146 SGLDLVEGLAYDWI---GGHIYWLDSR-------LNRIEVCDENGT-----NRIVLAK------DNITQPRGMMLDPSPG 204 (461)
Q Consensus 146 ~g~~~p~~iavd~~---~~~ly~~d~~-------~~~I~~~~~~G~-----~~~~l~~------~~~~~p~~ia~d~~~g 204 (461)
.+...|.+||+++. ++.||+++.. ..+|.+.++++. ..++++. .....|.+|+++|. |
T Consensus 63 ~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd-G 141 (353)
T 2g8s_A 63 HGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK-G 141 (353)
T ss_dssp STTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS-S
T ss_pred CCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC-C
Confidence 34556789999985 8999999865 457888887643 2334432 12355899999995 7
Q ss_pred ceEEEEeecCC-------------CCcEEEEecCCCC------------cEEEEecccccceeEEeeccCCeeEEecCCC
Q psy17325 205 TRWLFWTDWGE-------------NPRIERIGMDGSN------------RSTIISTKIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 205 ~~~ly~td~~~-------------~~~I~~~~~dG~~------------~~~i~~~~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
+||++. +. ..+|.|++.+|+. ...+...++..|.||++|+.+++||++|...
T Consensus 142 --~Lyv~~-Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~ 218 (353)
T 2g8s_A 142 --YLFIAL-GENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP 218 (353)
T ss_dssp --EEEEEE-CCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred --cEEEEE-CCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence 899996 33 2589999999972 2335566788999999998889999999875
Q ss_pred c---eeeecccceeeeeccceeeeEEEEEecCCC-CcceeeeEEe-------------CCCCc-eEEEEeCCe-eeeEEE
Q psy17325 260 D---FIDCKSLEIKTNVNYSTIFRKLYWIDEGGN-GVPLKIGKAN-------------MDGSN-ASILVSGQL-YEALAL 320 (461)
Q Consensus 260 ~---~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~-~~~~~I~~~~-------------~~g~~-~~~l~~~~~-p~~iav 320 (461)
+ .|..+ ..+.. |.+..-.-.. ..+.. ......... |.|+++
T Consensus 219 ~~~dei~~i--------------------~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~ 278 (353)
T 2g8s_A 219 RGGDEINIP--------------------QKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAF 278 (353)
T ss_dssp BSCEEEECC--------------------CTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEE
T ss_pred CCCcEEeEe--------------------ccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEE
Confidence 3 22211 11110 1100000000 00100 111111122 889998
Q ss_pred ec------cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe---EEEeeCCCCCceeEEEecCCCeEEEE-cCCCC
Q psy17325 321 DL------ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR---STIISTKIYWPNGLTLDIATRRVYFA-DSKLD 390 (461)
Q Consensus 321 d~------~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~---~~l~~~~l~~p~glaiD~~~~~ly~~-d~~~~ 390 (461)
.. ..|.||+++.. ..+|.++.+++... ..++......|.+|++++ ++.||++ |...+
T Consensus 279 y~g~~fp~~~g~l~v~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~td~~~g 345 (353)
T 2g8s_A 279 YNSDKFPQWQQKLFIGALK------------DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DGYLYVLTDESSG 345 (353)
T ss_dssp ECCSSSGGGTTEEEEEETT------------TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TSCEEEEECSTTE
T ss_pred ECCccCcccCCcEEEEEcc------------CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CCcEEEEEeCCCC
Confidence 73 24778877766 78999999986421 223323345899999994 5789996 76788
Q ss_pred eEEEEEe
Q psy17325 391 FIDFCNY 397 (461)
Q Consensus 391 ~I~~~~~ 397 (461)
+|+|+..
T Consensus 346 ~I~ri~~ 352 (353)
T 2g8s_A 346 ELLKVSP 352 (353)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9998864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-10 Score=109.48 Aligned_cols=243 Identities=12% Similarity=0.073 Sum_probs=147.9
Q ss_pred CccceeeeeeeecCCeEEEEeCCCCeEEEEeC--CCCcEEEEecCCCCCceeEEEcCCCCceEEE--Eee------cC--
Q psy17325 147 GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDE--NGTNRIVLAKDNITQPRGMMLDPSPGTRWLF--WTD------WG-- 214 (461)
Q Consensus 147 g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~--~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly--~td------~~-- 214 (461)
+...|..+++++.++.||.++.. .|.+.++ +|+............|..++++|..+ +|| .++ .+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTR--AIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCE--EEEEEECSSTTCCEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCC--EEEEEEecCCcceeccce
Confidence 44578899999988889999886 8888876 45433222111112488899999744 544 343 11
Q ss_pred ---CCCcEEEEec--CCCCcEEEEe---cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 215 ---ENPRIERIGM--DGSNRSTIIS---TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 215 ---~~~~I~~~~~--dG~~~~~i~~---~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
....+...++ +|.....+.. .....|.++++++.++.||.++...+.
T Consensus 114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~------------------------- 168 (365)
T 1jof_A 114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK------------------------- 168 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-------------------------
T ss_pred eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE-------------------------
Confidence 2344555555 4543322221 134579999999988899999876644
Q ss_pred cCCCCcceeeeEEeCC--CCceEE-EEe--C-Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec---C
Q psy17325 287 EGGNGVPLKIGKANMD--GSNASI-LVS--G-QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD---G 356 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~--g~~~~~-l~~--~-~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d---G 356 (461)
|.+.+++ |+...+ .+. . .. |++++++|.++.||++... .+.|...+++ |
T Consensus 169 ---------v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------------~~~v~v~~~~~~~g 227 (365)
T 1jof_A 169 ---------LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATH 227 (365)
T ss_dssp ---------EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTC
T ss_pred ---------EEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC------------CCeEEEEEEeCCCC
Confidence 4444443 332211 122 1 23 9999999999999988765 4455555544 3
Q ss_pred CCe---EEEe--eCCC---C-------CceeEE-EecCCCeEEEEcCCCC-----eEEEEEecCCCCeEEEEE-ccccce
Q psy17325 357 SNR---STII--STKI---Y-------WPNGLT-LDIATRRVYFADSKLD-----FIDFCNYDGTGRQQVILI-DLMVEF 414 (461)
Q Consensus 357 ~~~---~~l~--~~~l---~-------~p~gla-iD~~~~~ly~~d~~~~-----~I~~~~~~g~g~~~~~~~-~~~~~~ 414 (461)
+.. ..+. .... . .|.+++ +++++++||+++...+ .|..++++.+|....+.. ......
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~ 307 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS 307 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC
Confidence 321 1121 1111 2 588999 9988889999987665 888888853565433211 100110
Q ss_pred eeccCCCCCcceEEEee---eCCEEEEEeCCCceee
Q psy17325 415 TNDLMGDNGVPALALDL---ENGMLYYSTEGAEFLK 447 (461)
Q Consensus 415 ~~~~~~~~~~~~~~l~~---~~~~lYwtd~~~~~i~ 447 (461)
.+..+++++ ++++||+++..++.|+
T Consensus 308 --------~~~~~a~sp~~~dg~~l~v~~~~~~~v~ 335 (365)
T 1jof_A 308 --------GGHSNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp --------CTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred --------CcccceecCCCcCCCEEEEEEcCCCeEE
Confidence 123567777 6889999998877664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-09 Score=100.25 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=125.4
Q ss_pred cceeeeeeeecCCeEEEEeC--CCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDS--RLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~--~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..|.||+++.. +.||++.. ..++|.++++. |+....+.......+.|++++ .+ .||++.|. ...+...+.+
T Consensus 21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~--~lyv~t~~-~~~v~viD~~ 94 (266)
T 2iwa_A 21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NE--KLYQVVWL-KNIGFIYDRR 94 (266)
T ss_dssp CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT--EEEEEETT-CSEEEEEETT
T ss_pred CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CC--EEEEEEec-CCEEEEEECC
Confidence 35899999865 79999975 46899999976 544444432332346677887 45 89999975 4689988887
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
......-+..+ .|.|+.+.+.+++||.++. .+ +|.+.++....
T Consensus 95 t~~v~~~i~~g--~~~g~glt~Dg~~l~vs~g-s~----------------------------------~l~viD~~t~~ 137 (266)
T 2iwa_A 95 TLSNIKNFTHQ--MKDGWGLATDGKILYGSDG-TS----------------------------------ILYEIDPHTFK 137 (266)
T ss_dssp TTEEEEEEECC--SSSCCEEEECSSSEEEECS-SS----------------------------------EEEEECTTTCC
T ss_pred CCcEEEEEECC--CCCeEEEEECCCEEEEECC-CC----------------------------------eEEEEECCCCc
Confidence 32221112222 3556666666899999984 43 23344433322
Q ss_pred e-EEE-Ee-CC----eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeC------------
Q psy17325 306 A-SIL-VS-GQ----LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIIST------------ 365 (461)
Q Consensus 306 ~-~~l-~~-~~----~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~------------ 365 (461)
. ..+ +. .+ .|+++++. +|+||.+... .+.|.+.++. |+-...|-..
T Consensus 138 v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~ 203 (266)
T 2iwa_A 138 LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFR 203 (266)
T ss_dssp EEEEEECEETTEECCCEEEEEEE--TTEEEEEETT------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred EEEEEEECCCCcccccceeEEEE--CCEEEEecCC------------CCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence 1 111 11 11 16777766 6788887655 6678888774 3333333212
Q ss_pred CCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 366 KIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
....|+|||+|+.+++||++....++++.+++
T Consensus 204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 23578999999999999999999999999999
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-09 Score=104.74 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=133.4
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P 240 (461)
+.+|++....+.|.+.+++.......+... ..|.++++.|... +||++. .....|...++........+.. -..|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~--~l~~~~-~~d~~i~v~d~~~~~~~~~~~~-~~~v 76 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGT--KVYVAN-AHSNDVSIIDTATNNVIATVPA-GSSP 76 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS--EEEEEE-GGGTEEEEEETTTTEEEEEEEC-SSSE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCC--EEEEEC-CCCCeEEEEECCCCeEEEEEEC-CCCc
Confidence 468888888999999998765544444433 4589999999877 899887 3456888888864433333332 2378
Q ss_pred eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEE
Q psy17325 241 NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALA 319 (461)
Q Consensus 241 ~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~ia 319 (461)
.++++++.+++||++..... .|.+.++........+.... +.+++
T Consensus 77 ~~~~~spdg~~l~~~~~~~~----------------------------------~v~v~d~~~~~~~~~~~~~~~~~~~~ 122 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASS----------------------------------TLSVIDTTSNTVAGTVKTGKSPLGLA 122 (391)
T ss_dssp EEEEECTTSSEEEEEETTTT----------------------------------EEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred cceEECCCCCEEEEEECCCC----------------------------------EEEEEECCCCeEEEEEeCCCCcceEE
Confidence 99999998899999876653 46666666554443443333 89999
Q ss_pred EeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 320 LDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 320 vd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++|.+..||++... .+.|...++........+ ..-..|.++++++.++.||++....+.|...++
T Consensus 123 ~s~dg~~l~~~~~~------------~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 123 LSPDGKKLYVTNNG------------DKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp ECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ECCCCCEEEEEeCC------------CCEEEEEECCCCcEEEEE-ecCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 99988889888766 566777766544333333 234568999999888899999888899999999
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=104.95 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=137.3
Q ss_pred ccceeeeeeeecCCeEEEEeCCC----CeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCC-----C
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRL----NRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGE-----N 216 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~-----~ 216 (461)
-..|.++++|+ .+++|++.... +.|.+.++++.....++. .....|.+|++|+. | .+|+++... .
T Consensus 86 ~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~-g--~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 86 KANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-G--GFYFTDFRGYSTNPL 161 (333)
T ss_dssp SSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-S--CEEEEECCCBTTBCC
T ss_pred CCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC-C--CEEEEeccccccCCC
Confidence 35689999986 46799998776 789999998877654432 22356899999996 5 689888431 3
Q ss_pred CcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 217 PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 217 ~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
..|++++.++.....+. .....|+++++++.++.||+++...+. |
T Consensus 162 ~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~----------------------------------i 206 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANR----------------------------------L 206 (333)
T ss_dssp EEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTE----------------------------------E
T ss_pred ceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCe----------------------------------E
Confidence 67999988875554443 345679999999887789999865533 4
Q ss_pred eEEeC--CCCceE-----EEEe-CC--eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCC
Q psy17325 297 GKANM--DGSNAS-----ILVS-GQ--LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK 366 (461)
Q Consensus 297 ~~~~~--~g~~~~-----~l~~-~~--~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~ 366 (461)
.+.++ +|.... .... .. .|.+|++|+. |+||+++.. .+.|.+.+.+|.....+....
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~------------~~~v~~~d~~g~~~~~~~~~~ 273 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSD-DNLYVAMYG------------QGRVLVFNKRGYPIGQILIPG 273 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTT-CCEEEEEET------------TTEEEEECTTSCEEEEEECTT
T ss_pred EEEEecCCCcCcccccceEEEecCCCCCCCceEECCC-CCEEEEEcC------------CCEEEEECCCCCEEEEEEcCC
Confidence 44444 333221 1111 11 3999999974 678888765 568888888776555554221
Q ss_pred -----CCCceeEEEecCCCeEEEEcCC-----CCeEEEEEec
Q psy17325 367 -----IYWPNGLTLDIATRRVYFADSK-----LDFIDFCNYD 398 (461)
Q Consensus 367 -----l~~p~glaiD~~~~~ly~~d~~-----~~~I~~~~~~ 398 (461)
+..|.++++++++++||++... .+.|++++++
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 2279999998666799998765 3467777763
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.4e-10 Score=106.70 Aligned_cols=192 Identities=12% Similarity=0.124 Sum_probs=126.9
Q ss_pred CCceeEEEcCCCCceEEEEee--cC---------CCCcEEEEecCCC--CcEEEEecc------cccceeEEeecc---C
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTD--WG---------ENPRIERIGMDGS--NRSTIISTK------IYWPNGLTLDIA---T 249 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td--~~---------~~~~I~~~~~dG~--~~~~i~~~~------~~~P~glavD~~---~ 249 (461)
..|..|++++ .| .+|.+. |. ...+|++++++.. ..+.+...+ ...|.||.+... +
T Consensus 50 ~G~EDi~~~~-~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 50 NGSEDLEILP-NG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp SCCCEEEECT-TS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred CCcceeEEcC-CC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCc
Confidence 4689999998 58 899885 11 3578999998732 233333322 258999999652 3
Q ss_pred CeeEEecCCC--ceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe---CCe--eeeEEEec
Q psy17325 250 RRVYFADSKL--DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS---GQL--YEALALDL 322 (461)
Q Consensus 250 ~~ly~~d~~~--~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~---~~~--p~~iavd~ 322 (461)
.+||+++... .+| .|++.+.++.....+.. ..+ |+++++|+
T Consensus 127 ~~L~Vvnh~~~~s~i--------------------------------elf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~ 174 (355)
T 3sre_A 127 VYLLVVNHPGSSSTV--------------------------------EVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG 174 (355)
T ss_dssp EEEEEEECSTTCCEE--------------------------------EEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE
T ss_pred EEEEEEECCCCCCeE--------------------------------EEEEEECCCCEEEEEeccccCCCCCCceEEEeC
Confidence 4799998763 222 35555565554333322 112 99999997
Q ss_pred cCCeEEEeecCceeeEEEeec----------CCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeE
Q psy17325 323 ENGMLYYSTLKCTRWLFWTDW----------GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 392 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~l~~~d~----------~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I 392 (461)
.|.+|+++.. |++|- ...++|+|.+.+ ..+++. .++..|+||+++++++.||++|+..++|
T Consensus 175 -~G~fyvt~~~-----~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I 245 (355)
T 3sre_A 175 -PEHFYATNDH-----YFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA-EGFDFANGINISPDGKYVYIAELLAHKI 245 (355)
T ss_dssp -TTEEEEEESC-----SCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred -CCCEEecCCc-----EeCCcccccchhhccCCccEEEEEECC--eEEEee-cCCcccCcceECCCCCEEEEEeCCCCeE
Confidence 5778887543 44441 135688888763 444554 8899999999999999999999999999
Q ss_pred EEEEecCCCCeE--EEEEccccceeeccCCCCCcceEEEeee--CCEEEEEe
Q psy17325 393 DFCNYDGTGRQQ--VILIDLMVEFTNDLMGDNGVPALALDLE--NGMLYYST 440 (461)
Q Consensus 393 ~~~~~~g~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~lYwtd 440 (461)
++++++++|... .++ . .++ .|-+++++ +|.||++.
T Consensus 246 ~~~~~~~~g~l~~~~~~-~-~~g-----------~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 246 HVYEKHANWTLTPLRVL-S-FDT-----------LVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEECTTSCEEEEEEE-E-CSS-----------EEEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCcEecCEEE-e-CCC-----------CCceEEEeCCCCcEEEEe
Confidence 999997556432 222 1 111 25567666 38999965
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.5e-12 Score=94.19 Aligned_cols=76 Identities=36% Similarity=0.772 Sum_probs=62.7
Q ss_pred CCCcccCCCCCCCC-CceeCCCCceEeCCCCCeecCCCCceecCcceecCCccc-CceeeccCCccccCCCCeeeeCCCC
Q psy17325 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCS-QMCTNTKGSYICSCNEGYVLEYDNH 106 (461)
Q Consensus 29 ~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~-~~C~~~~g~~~C~C~~g~~l~~~~~ 106 (461)
++++|.. +..|.+ .|++++++|.|.|++||.+ ++..|++++||.....|. +.|.++.++|.|.|++||.+..+ +
T Consensus 4 dideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~ 79 (82)
T 1emn_A 4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM-M 79 (82)
T ss_dssp CCCSSSS-TTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCSS-S
T ss_pred ccccCCC-CCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCCC-C
Confidence 4677865 345654 7999999999999999986 578999999997555775 59999999999999999987765 5
Q ss_pred ce
Q psy17325 107 TC 108 (461)
Q Consensus 107 ~C 108 (461)
.|
T Consensus 80 ~C 81 (82)
T 1emn_A 80 TC 81 (82)
T ss_dssp CC
T ss_pred cc
Confidence 55
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=109.14 Aligned_cols=255 Identities=13% Similarity=0.133 Sum_probs=148.1
Q ss_pred cCCeEEEEeCCC----CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------CCCcEEEEecCC
Q psy17325 159 IGGHIYWLDSRL----NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG--------ENPRIERIGMDG 226 (461)
Q Consensus 159 ~~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~--------~~~~I~~~~~dG 226 (461)
..+.+|+++... +.|.++|+.......-+..+ ..| +|+++|..+ +||+++.. ....|..++...
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk--~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGS--FFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCC--EEEEEeccccccccCCCCCEEEEEECCC
Confidence 467899999876 79999998766544333333 358 999999977 99999842 124688887764
Q ss_pred CCc-EEEEec---c---cccceeEEeeccCCeeEEecCC-Cceeeecccceeee---eccc---ee---eeEEEEEecCC
Q psy17325 227 SNR-STIIST---K---IYWPNGLTLDIATRRVYFADSK-LDFIDCKSLEIKTN---VNYS---TI---FRKLYWIDEGG 289 (461)
Q Consensus 227 ~~~-~~i~~~---~---~~~P~glavD~~~~~ly~~d~~-~~~i~~~~~~~~~~---v~~~---~~---~~~~yw~d~~~ 289 (461)
... ..|... . ...|.++++++.+++||+++.. .+.|..++...++. |... .+ .+..|.+....
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCC
Confidence 433 233221 0 2479999999999999999864 56676665544222 2221 01 11223332222
Q ss_pred CCcceeeeEEeCCCCceEEE----EeCCe-ee--eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEE
Q psy17325 290 NGVPLKIGKANMDGSNASIL----VSGQL-YE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTI 362 (461)
Q Consensus 290 ~~~~~~I~~~~~~g~~~~~l----~~~~~-p~--~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l 362 (461)
+++..++......... +.... |. .+++.+..+.+|++.. .++++.+++.+....++
T Consensus 239 ----G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-------------~g~V~ViD~~~~~~~v~ 301 (426)
T 3c75_H 239 ----GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-------------TGKIFQADLTAEGATFR 301 (426)
T ss_dssp ----SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-------------TSEEEEEEECSSCEEEC
T ss_pred ----CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-------------CCcEEEEeccCCceEEe
Confidence 1233333321111111 00000 22 2344666666655432 35677777766554433
Q ss_pred eeCC---------CCCcee---EEEecCCCeEEEEcC---------CCCeEEEEEecCCCCeEEEEEccccceeeccCCC
Q psy17325 363 ISTK---------IYWPNG---LTLDIATRRVYFADS---------KLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGD 421 (461)
Q Consensus 363 ~~~~---------l~~p~g---laiD~~~~~ly~~d~---------~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~ 421 (461)
.... -..|.| +++++++++||++.. ..+.|..+|+. +......+.-+. .
T Consensus 302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~-T~kvv~~I~vg~---~------ 371 (426)
T 3c75_H 302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE-TGERINKIELGH---E------ 371 (426)
T ss_dssp CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEE---E------
T ss_pred eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC-CCeEEEEEECCC---C------
Confidence 2100 013555 899999999999964 24579999993 454433332211 1
Q ss_pred CCcceEEEeeeCC-EEEEEeCCCcee
Q psy17325 422 NGVPALALDLENG-MLYYSTEGAEFL 446 (461)
Q Consensus 422 ~~~~~~~l~~~~~-~lYwtd~~~~~i 446 (461)
+..++++.++. .||.+++.++.|
T Consensus 372 --P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 372 --IDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp --ECEEEECCSSSCEEEEEETTTTEE
T ss_pred --cCeEEEccCCCEEEEEEcCCCCeE
Confidence 22566666777 899999877655
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-08 Score=100.78 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=160.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+.++++. ..+++|++....+.|.+.+++.......+......|.+++++|... .||++. .....|...++.....
T Consensus 171 ~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~-~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 171 FVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD--LVYCSN-WISEDISVIDRKTKLE 246 (433)
T ss_dssp EEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT--EEEEEE-TTTTEEEEEETTTTEE
T ss_pred ceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC--EEEEEe-cCCCcEEEEECCCCcE
Confidence 34557774 4678999999999999999876554444433345799999999877 899888 4456899888864333
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
...+. ....|.++++++.++.||.+....+.+... . +.|.+.++........
T Consensus 247 ~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-----------------------d----g~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 247 IRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESG-----------------------G----GRLGIYSMDKEKLIDT 298 (433)
T ss_dssp EEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSC-----------------------C----EEEEEEETTTTEEEEE
T ss_pred EEEec-CCCCceEEEEcCCCCEEEEEECCCCccccC-----------------------C----CeEEEEECCCCcEEee
Confidence 22222 234689999999888888877533211100 0 3566777654433322
Q ss_pred EeCC-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQ-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
.... .|.+++++|.++.||++... .+.|...+++.......+ .....|.++++++.++.||++...
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMC------------CSKIEVYDLKEKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETT------------TTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEECC
T ss_pred ccCCCCcceEEECCCCCEEEEEecC------------CCEEEEEECCCCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecC
Confidence 2212 28899999988889988766 667777777654433333 345678999999888889998776
Q ss_pred C--------------CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 389 L--------------DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 389 ~--------------~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
. +.|...++. ++.....+.. .... ..++++.++..||.+...++.|++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~-~~~~~~~~~~-~~~~----------~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTT-TDTVKEFWEA-GNQP----------TGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETT-TTEEEEEEEC-SSSE----------EEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCccccccccccccceEEEEEECC-CCcEEEEecC-CCCC----------ceEEEcCCCCEEEEEECCCCeEEE
Confidence 4 489999983 4444333322 1111 134555567789999887777753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.5e-08 Score=94.03 Aligned_cols=200 Identities=13% Similarity=0.076 Sum_probs=127.6
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC--CcE---EEEecCC---------CCCceeEEEcCCCCceEEEEeec
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG--TNR---IVLAKDN---------ITQPRGMMLDPSPGTRWLFWTDW 213 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G--~~~---~~l~~~~---------~~~p~~ia~d~~~g~~~ly~td~ 213 (461)
-..|..+++ .++.||+++...+.|.+.+++. ... ..+.... ...|.+++++|... +||+++.
T Consensus 99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~ 174 (361)
T 3scy_A 99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDL 174 (361)
T ss_dssp SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEET
T ss_pred CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeC
Confidence 346888888 5788999999899999988753 221 1111111 12357899999876 8999994
Q ss_pred CCCCcEEEEecCCCC-------c------EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeee
Q psy17325 214 GENPRIERIGMDGSN-------R------STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFR 280 (461)
Q Consensus 214 ~~~~~I~~~~~dG~~-------~------~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~ 280 (461)
+ ...|...+++... . ..+.......|.++++++.++.||+++...+.
T Consensus 175 ~-~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~------------------- 234 (361)
T 3scy_A 175 G-TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT------------------- 234 (361)
T ss_dssp T-TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-------------------
T ss_pred C-CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-------------------
Confidence 3 4577776666332 1 12222234579999999988899999876644
Q ss_pred EEEEEecCCCCcceeeeEEeCCCCceEEEE---eCC---e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEe
Q psy17325 281 KLYWIDEGGNGVPLKIGKANMDGSNASILV---SGQ---L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIG 353 (461)
Q Consensus 281 ~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~---~~~---~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~ 353 (461)
|.+.+++....+.+. ... . |.+|+++|.++.||+++.. ..+.|...+
T Consensus 235 ---------------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-----------~~~~i~v~~ 288 (361)
T 3scy_A 235 ---------------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-----------KADGVAIFK 288 (361)
T ss_dssp ---------------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-----------SSCEEEEEE
T ss_pred ---------------EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-----------CCCEEEEEE
Confidence 334443322221111 111 1 7799999999888887643 123455555
Q ss_pred ec---CCCeEE-EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 354 MD---GSNRST-IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 354 ~d---G~~~~~-l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
++ |+...+ .+.. -..|.+|++++++++||+++...+.|..+.+|
T Consensus 289 ~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 289 VDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 54 332111 1212 46899999998888999999888888886664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-08 Score=98.00 Aligned_cols=206 Identities=16% Similarity=0.107 Sum_probs=134.3
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCC--CCcEEEE-e-cC--------CCCCceeEEEcCCCCceEEEEeecCC
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDEN--GTNRIVL-A-KD--------NITQPRGMMLDPSPGTRWLFWTDWGE 215 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~--G~~~~~l-~-~~--------~~~~p~~ia~d~~~g~~~ly~td~~~ 215 (461)
...|.++++++.++.||+++...+.|.+.+++ |...... + .. ....|.+++++|. | .||+++. .
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd-g--~l~v~~~-~ 160 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD-N--RLAVIDL-G 160 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT-S--CEEEEET-T
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC-C--cEEEEeC-C
Confidence 45789999999888999999888999888864 4432211 1 11 1124778999996 4 4999984 4
Q ss_pred CCcEEEEecCCCC-cEEEE---ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCC
Q psy17325 216 NPRIERIGMDGSN-RSTII---STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNG 291 (461)
Q Consensus 216 ~~~I~~~~~dG~~-~~~i~---~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~ 291 (461)
...|...+++... ...+. ...-..|.++++++.++.||+++...+.|
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v----------------------------- 211 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI----------------------------- 211 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE-----------------------------
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE-----------------------------
Confidence 4578777776222 22221 11223689999999888899988776543
Q ss_pred cceeeeEEeCCC--CceEE---EEe--C-----CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec--CC
Q psy17325 292 VPLKIGKANMDG--SNASI---LVS--G-----QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD--GS 357 (461)
Q Consensus 292 ~~~~I~~~~~~g--~~~~~---l~~--~-----~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d--G~ 357 (461)
.+.+++. ...+. +.. . ..|.+++++|.++.||+++.. .+.|...+++ |+
T Consensus 212 -----~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~------------~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 212 -----ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG------------YNTLAVFAVTADGH 274 (347)
T ss_dssp -----EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET------------TTEEEEEEECGGGC
T ss_pred -----EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC------------CCEEEEEEECCCCc
Confidence 2222221 11111 111 0 117889999999999998776 5666666664 32
Q ss_pred CeEE-EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecC-CCCe
Q psy17325 358 NRST-IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDG-TGRQ 403 (461)
Q Consensus 358 ~~~~-l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g-~g~~ 403 (461)
...+ .+......|.+|++++++++||+++...+.|..+++|. +|..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 2221 12233557999999988889999999888888886643 3444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.4e-09 Score=97.57 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=114.5
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccc-------ccceeEEe---eccCCeeEE-ecCCCc
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI-------YWPNGLTL---DIATRRVYF-ADSKLD 260 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~-------~~P~glav---D~~~~~ly~-~d~~~~ 260 (461)
--|.+++.|+..+ .+|++++. +.+|.+.+.++...+.+....+ ..|.||.+ |+. ++|++ ++....
T Consensus 13 ~yPE~~~wd~~~g--~~~vs~l~-~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 13 LTPEDTIYDRTRQ--VFYQSNLY-KGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CCCSCEEEETTTT--EEEEEETT-TTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred cCCcCccCcCCCC--EEEEEecc-CCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 4599999999988 99999954 5799999998655444432232 26899999 776 88887 442110
Q ss_pred eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC----CCceEEEEe-----C-------C--eeeeEEEec
Q psy17325 261 FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD----GSNASILVS-----G-------Q--LYEALALDL 322 (461)
Q Consensus 261 ~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~----g~~~~~l~~-----~-------~--~p~~iavd~ 322 (461)
. .. .+ ....-...+.+.+++ |+....+-- . . .+++|++|+
T Consensus 89 f-~~-~g--------------------~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~ 146 (334)
T 2p9w_A 89 F-NF-AD--------------------QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR 146 (334)
T ss_dssp T-CT-TS--------------------CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT
T ss_pred c-cc-cc--------------------cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC
Confidence 0 00 00 000000357777777 443332221 0 1 288999996
Q ss_pred cCCeEEEeecCceeeEEEeecCCC-CceEEEeecCCCeEEEeeC-----CCCCceeEEEecCCCeEEEEcCCCCeEEEEE
Q psy17325 323 ENGMLYYSTLKCTRWLFWTDWGEN-PRIERIGMDGSNRSTIIST-----KIYWPNGLTLDIATRRVYFADSKLDFIDFCN 396 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~l~~~d~~~~-~~I~~~~~dG~~~~~l~~~-----~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~ 396 (461)
.|++|++++. . +.|.|++.||+...++... ....|+||++.+.+..|++++. .++|.+++
T Consensus 147 -~GnaYVt~s~------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD 212 (334)
T 2p9w_A 147 -DGNSYVAFAL------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFD 212 (334)
T ss_dssp -TSCEEEEEEE------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEE
T ss_pred -CCCEEEeCCC------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEc
Confidence 7999999887 7 8999999999966655421 2234789999988899999999 99999999
Q ss_pred ec
Q psy17325 397 YD 398 (461)
Q Consensus 397 ~~ 398 (461)
+.
T Consensus 213 ~~ 214 (334)
T 2p9w_A 213 VS 214 (334)
T ss_dssp CS
T ss_pred CC
Confidence 93
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-11 Score=101.45 Aligned_cols=81 Identities=28% Similarity=0.573 Sum_probs=67.0
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceec-CCcccCce-eeccCCccccCCCCeeeeCCCC
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ-PGYCSQMC-TNTKGSYICSCNEGYVLEYDNH 106 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~-~~~C~~~C-~~~~g~~~C~C~~g~~l~~~~~ 106 (461)
++++|..++..-...|.+.+++|.|.|++||. +..|+++++|.. +..|.+.| .++.++|.|.|++||.+..+++
T Consensus 47 dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~----G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~ 122 (146)
T 1x7a_L 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQK 122 (146)
T ss_dssp ---CCSSCSSCTTCEEEECSSCEEEECCSSEE----STTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSS
T ss_pred CcCcCCCCCCCCCCEeECCCCCEEEecCCCCc----CCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCC
Confidence 67889865533334799999999999999996 678999999974 45798999 9999999999999999999999
Q ss_pred ceeeccc
Q psy17325 107 TCKAINH 113 (461)
Q Consensus 107 ~C~~~~~ 113 (461)
.|.++++
T Consensus 123 ~C~~~~~ 129 (146)
T 1x7a_L 123 SCKPAVP 129 (146)
T ss_dssp SEEECSS
T ss_pred cCCCCCC
Confidence 9988754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-08 Score=98.85 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=126.4
Q ss_pred EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeee
Q psy17325 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDC 264 (461)
Q Consensus 185 ~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~ 264 (461)
.+.......+.++++++..+ .|||+|. ...+|.+.+.++.....+.. -..|.+|++++ .+++|++...
T Consensus 42 ~~~~~~~~~~egp~~~~~~~--~l~~~d~-~~~~i~~~d~~~~~~~~~~~--~~~v~~i~~~~-dg~l~v~~~~------ 109 (326)
T 2ghs_A 42 VLDETPMLLGEGPTFDPASG--TAWWFNI-LERELHELHLASGRKTVHAL--PFMGSALAKIS-DSKQLIASDD------ 109 (326)
T ss_dssp EEECSCCSBEEEEEEETTTT--EEEEEEG-GGTEEEEEETTTTEEEEEEC--SSCEEEEEEEE-TTEEEEEETT------
T ss_pred EeeccCCCCCcCCeEeCCCC--EEEEEEC-CCCEEEEEECCCCcEEEEEC--CCcceEEEEeC-CCeEEEEECC------
Confidence 33433345588999999878 9999994 45799999998754443322 24688999986 4677776521
Q ss_pred cccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC-----Ce-eeeEEEeccCCeEEEeecCceeeE
Q psy17325 265 KSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG-----QL-YEALALDLENGMLYYSTLKCTRWL 338 (461)
Q Consensus 265 ~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~-----~~-p~~iavd~~~~~lY~t~~~~~~~l 338 (461)
.|.+.++++...+.+... .. ++++++|+. |++|+++....
T Consensus 110 ------------------------------gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~--- 155 (326)
T 2ghs_A 110 ------------------------------GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRK--- 155 (326)
T ss_dssp ------------------------------EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETT---
T ss_pred ------------------------------CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCc---
Confidence 256666654444444321 12 889999984 56787654200
Q ss_pred EEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec-CCC-C--eEEEEEccccce
Q psy17325 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD-GTG-R--QQVILIDLMVEF 414 (461)
Q Consensus 339 ~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~-g~g-~--~~~~~~~~~~~~ 414 (461)
.....+.|++.+ +|+. +.+. ..+..|++|+++++++.|||++...+.|.+++++ .+| . .+.++.......
T Consensus 156 ---~~~~~~~l~~~~-~g~~-~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~ 229 (326)
T 2ghs_A 156 ---AETGAGSIYHVA-KGKV-TKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK 229 (326)
T ss_dssp ---CCTTCEEEEEEE-TTEE-EEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS
T ss_pred ---CCCCceEEEEEe-CCcE-EEee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC
Confidence 001235788887 5543 2333 4566799999998888999999999999999984 234 2 112222111000
Q ss_pred eeccCCCCCcceEEEeee-CCEEEEEeCCCcee
Q psy17325 415 TNDLMGDNGVPALALDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 415 ~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i 446 (461)
..|.+++++ ++.||++.++.+.|
T Consensus 230 ---------~~p~gi~~d~~G~lwva~~~~~~v 253 (326)
T 2ghs_A 230 ---------GGMDGSVCDAEGHIWNARWGEGAV 253 (326)
T ss_dssp ---------SEEEEEEECTTSCEEEEEETTTEE
T ss_pred ---------CCCCeeEECCCCCEEEEEeCCCEE
Confidence 124567665 57899988766544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-08 Score=99.85 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=150.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-----CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-----DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-----~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.|.++++++ ++.+|++....+.|.+.++.......... .....+.++++.+. + .+|++. .....|...++
T Consensus 124 ~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~~~s~-~~d~~v~~~d~ 198 (433)
T 3bws_A 124 QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-N--ELWVSQ-MQANAVHVFDL 198 (433)
T ss_dssp CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-T--EEEEEE-GGGTEEEEEET
T ss_pred CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-C--EEEEEE-CCCCEEEEEEC
Confidence 466888988 88999999888899999987554443221 22334677899664 5 678777 44578888888
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
+.......+......|.++++++.++.||++....+ .|.+.++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------------------~i~~~d~~~~ 244 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISE----------------------------------DISVIDRKTK 244 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTT----------------------------------EEEEEETTTT
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCC----------------------------------cEEEEECCCC
Confidence 765444444444567999999998899998876553 3555665433
Q ss_pred ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEE
Q psy17325 305 NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 305 ~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly 383 (461)
.....+.... |.+++++|.++.||.+..... .+. ...+.|...++......... ..-..|.++++++.++.||
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~----~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~ 318 (433)
T 3bws_A 245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSAS-NQE----SGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIY 318 (433)
T ss_dssp EEEEECCCCSEEEEEEECTTSSEEEEEEEESC-TTC----SCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEE
T ss_pred cEEEEecCCCCceEEEEcCCCCEEEEEECCCC-ccc----cCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEE
Confidence 3222222222 899999998888887764200 000 01346666666544333322 2223788999998888999
Q ss_pred EEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 384 FADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 384 ~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
++....+.|...+++ ++.....+. ..... ..++++.++..||.+....
T Consensus 319 ~~~~~~~~v~v~d~~-~~~~~~~~~-~~~~~----------~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 319 VSDMCCSKIEVYDLK-EKKVQKSIP-VFDKP----------NTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp EEETTTTEEEEEETT-TTEEEEEEE-CSSSE----------EEEEECTTSSEEEEEECCC
T ss_pred EEecCCCEEEEEECC-CCcEEEEec-CCCCC----------CeEEEcCCCCEEEEEecCC
Confidence 998889999999993 344333322 11111 1233334455677777654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-08 Score=90.99 Aligned_cols=200 Identities=15% Similarity=0.121 Sum_probs=120.0
Q ss_pred CceeEEEcCCCCceEEEEeecCC--CCcEEEEecCCCC-cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGE--NPRIERIGMDGSN-RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~--~~~I~~~~~dG~~-~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~ 269 (461)
.|.||++++. | .||.+. +. ...|.++++.... ...+.......+.|++++ +++||++....+
T Consensus 22 f~~Gl~~~~d-g--~Lyvst-g~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~--------- 86 (266)
T 2iwa_A 22 FTQGLVYAEN-D--TLFEST-GLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN--------- 86 (266)
T ss_dssp CEEEEEECST-T--EEEEEE-CSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS---------
T ss_pred CcccEEEeCC-C--eEEEEC-CCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC---------
Confidence 4899999986 7 899997 32 4789999997433 333322233356677887 689999988764
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCc
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPR 348 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~ 348 (461)
.+.+.+.+.. ....+-.. .|.|+.+.+.+++||+|+ + .+.+++.|-.....
T Consensus 87 -------------------------~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-g-s~~l~viD~~t~~v 138 (266)
T 2iwa_A 87 -------------------------IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-G-TSILYEIDPHTFKL 138 (266)
T ss_dssp -------------------------EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-S-SSEEEEECTTTCCE
T ss_pred -------------------------EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-C-CCeEEEEECCCCcE
Confidence 4666665522 22333222 355666666689999987 4 23444444322211
Q ss_pred eEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeec-----cCCCCC
Q psy17325 349 IERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTND-----LMGDNG 423 (461)
Q Consensus 349 I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~-----~~~~~~ 423 (461)
+.+...... ...+..|++|++. +++||++.+..+.|.++|+. +|.....+.-. ++... ......
T Consensus 139 ~~~I~Vg~~------~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~-tg~V~~~I~~~--g~~~~~~~~~~~~~~v 207 (266)
T 2iwa_A 139 IKKHNVKYN------GHRVIRLNELEYI--NGEVWANIWQTDCIARISAK-DGTLLGWILLP--NLRKKLIDEGFRDIDV 207 (266)
T ss_dssp EEEEECEET------TEECCCEEEEEEE--TTEEEEEETTSSEEEEEETT-TCCEEEEEECH--HHHHHHHHTTCTTCCC
T ss_pred EEEEEECCC------CcccccceeEEEE--CCEEEEecCCCCeEEEEECC-CCcEEEEEECC--CcccccccccccccCc
Confidence 111111100 0134568999985 68999999999999999994 67765544321 11000 000001
Q ss_pred cceEEEeeeCCEEEEEeCCCcee
Q psy17325 424 VPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 424 ~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+.+++++..++++|+|......+
T Consensus 208 ~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 208 LNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp EEEEEEETTTTEEEEEETTCSEE
T ss_pred eEEEEEcCCCCEEEEECCCCCeE
Confidence 22444444567999999888766
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-08 Score=97.55 Aligned_cols=257 Identities=14% Similarity=0.149 Sum_probs=145.3
Q ss_pred eecCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------CCCcEEEEec
Q psy17325 157 DWIGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG--------ENPRIERIGM 224 (461)
Q Consensus 157 d~~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~--------~~~~I~~~~~ 224 (461)
.+.++.+|++|.. .++|.++|.+......-+..+ ..|. |++.|... +||++++. ....|..++.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-~~P~-va~spDG~--~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLPN-PVVADDGS--FIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSCE-EEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-CCCc-EEECCCCC--EEEEEcccccccccCCCCCEEEEEEC
Confidence 4568899999986 789999998765543333333 3485 99999977 99999731 1246888877
Q ss_pred CCCCc-EEEEecc------cccceeEEeeccCCeeEEecCC-Cceeeeccccee---eeeccc---ee---eeEEEEEec
Q psy17325 225 DGSNR-STIISTK------IYWPNGLTLDIATRRVYFADSK-LDFIDCKSLEIK---TNVNYS---TI---FRKLYWIDE 287 (461)
Q Consensus 225 dG~~~-~~i~~~~------~~~P~glavD~~~~~ly~~d~~-~~~i~~~~~~~~---~~v~~~---~~---~~~~yw~d~ 287 (461)
..... ..|.... -..|.++++++.+++||+++.. .+.+..++...+ .+|... .+ ....|.+..
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~ 196 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC 196 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEEC
Confidence 65443 2222211 2379999999999999999864 567777665443 233221 01 111122222
Q ss_pred CCCCcceeeeEEeCCCCceEEEEeCCe------ee--eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe
Q psy17325 288 GGNGVPLKIGKANMDGSNASILVSGQL------YE--ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR 359 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~g~~~~~l~~~~~------p~--~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~ 359 (461)
.. +++....+......+...... |. ..+++...|+++|... .++|+.+++.+...
T Consensus 197 ~D----G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-------------~g~V~v~d~~~~~~ 259 (386)
T 3sjl_D 197 RD----GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-------------TGKIHQIDLSSGDA 259 (386)
T ss_dssp TT----SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT-------------TSEEEEEECTTSSC
T ss_pred CC----CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC-------------CCEEEEEECCCCcc
Confidence 22 123333332211111100000 11 1344444554444221 35777787776655
Q ss_pred EEEeeCC--------CC-Ccee---EEEecCCCeEEEEcC---------CCCeEEEEEecCCCCeEEEEEccccceeecc
Q psy17325 360 STIISTK--------IY-WPNG---LTLDIATRRVYFADS---------KLDFIDFCNYDGTGRQQVILIDLMVEFTNDL 418 (461)
Q Consensus 360 ~~l~~~~--------l~-~p~g---laiD~~~~~ly~~d~---------~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~ 418 (461)
+++-.-. .. .|.| +++|+..++||++.. ..++|..+|+. ++.....+..+. ..
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg~-~~---- 333 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMGH-EI---- 333 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEE-EE----
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECCC-Cc----
Confidence 4432111 01 2444 888999999999853 23689999993 455433332221 11
Q ss_pred CCCCCcceEEEeeeCC-EEEEEeCCCcee
Q psy17325 419 MGDNGVPALALDLENG-MLYYSTEGAEFL 446 (461)
Q Consensus 419 ~~~~~~~~~~l~~~~~-~lYwtd~~~~~i 446 (461)
..++++.++. .||.+++.++.|
T Consensus 334 ------~~lavs~D~~~~ly~tn~~~~~V 356 (386)
T 3sjl_D 334 ------DSINVSQDEKPLLYALSTGDKTL 356 (386)
T ss_dssp ------CEEEECSSSSCEEEEEETTTTEE
T ss_pred ------ceEEECCCCCeEEEEEcCCCCeE
Confidence 2466666765 789989877755
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-09 Score=105.91 Aligned_cols=177 Identities=16% Similarity=0.240 Sum_probs=109.0
Q ss_pred EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe--c------ccccceeEEeecc---CCeeE
Q psy17325 185 VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS--T------KIYWPNGLTLDIA---TRRVY 253 (461)
Q Consensus 185 ~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--~------~~~~P~glavD~~---~~~ly 253 (461)
.++...+..|++|+++|. | .||+++ ....+|.+++.++...+.+.. . ....+.|||+++. ++.||
T Consensus 20 ~~~a~~l~~P~~~a~~pd-G--~l~V~e-~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPD-N--QIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp EEEECCCSSEEEEEECTT-S--CEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred EEEECCCCCceEEEEcCC-C--cEEEEE-cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 334456889999999997 5 699999 333579998875322333321 1 2345669999987 89999
Q ss_pred EecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-----ceEEEEeC----C-e-eeeEEEec
Q psy17325 254 FADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-----NASILVSG----Q-L-YEALALDL 322 (461)
Q Consensus 254 ~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-----~~~~l~~~----~-~-p~~iavd~ 322 (461)
+++.....-. ++.. .....+|.|.++++. ..++++.. . . +.+|+++|
T Consensus 96 v~~s~~~~~~---------------------~~~~-~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p 153 (454)
T 1cru_A 96 ISGTFKNPKS---------------------TDKE-LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP 153 (454)
T ss_dssp EEEEEECTTC-----------------------CC-SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT
T ss_pred EEEeccccCC---------------------Cccc-cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC
Confidence 9885310000 0000 000035666665432 23445431 1 1 89999998
Q ss_pred cCCeEEEeecCceee----EEE---------------eecC-CCCceEEEeecCC-----------CeEEEeeCCCCCce
Q psy17325 323 ENGMLYYSTLKCTRW----LFW---------------TDWG-ENPRIERIGMDGS-----------NRSTIISTKIYWPN 371 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~----l~~---------------~d~~-~~~~I~~~~~dG~-----------~~~~l~~~~l~~p~ 371 (461)
.|+||++....... ++- -+.. ..++|.|++.||+ ..+++ ...+.+|.
T Consensus 154 -DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~-a~G~RNp~ 231 (454)
T 1cru_A 154 -DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY-TLGHRNPQ 231 (454)
T ss_dssp -TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE-EBCCSEEE
T ss_pred -CCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEE-EECCCCcc
Confidence 56899985430000 000 0000 1478999999998 33444 48999999
Q ss_pred eEEEecCCCeEEEEcCCCC
Q psy17325 372 GLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 372 glaiD~~~~~ly~~d~~~~ 390 (461)
||++|+ +++||++|.+.+
T Consensus 232 gla~dp-~G~L~~~d~g~~ 249 (454)
T 1cru_A 232 GLAFTP-NGKLLQSEQGPN 249 (454)
T ss_dssp EEEECT-TSCEEEEEECSS
T ss_pred eEEECC-CCCEEEEecCCC
Confidence 999997 799999997654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-08 Score=93.08 Aligned_cols=241 Identities=7% Similarity=-0.045 Sum_probs=146.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCC----CCceeEEEcCCCCceEEEEeecC----------
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNI----TQPRGMMLDPSPGTRWLFWTDWG---------- 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~----~~p~~ia~d~~~g~~~ly~td~~---------- 214 (461)
.|.++++++.++.+|++....+.|.+.++..... ..+..... ..|.+++++|... +||+++.+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC--EEEEEecccccccccccc
Confidence 4889999988889999999999999999865443 33322211 1689999999877 89998511
Q ss_pred CCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 215 ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 215 ~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
....|...++++......+.. -..|.++++++.++.||+++ +
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~---~---------------------------------- 154 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG---R---------------------------------- 154 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES---S----------------------------------
T ss_pred cCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC---C----------------------------------
Confidence 246888888875443333332 34689999999888899983 1
Q ss_pred eeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceee--EEEeecCCC---------CceEEEeecCCCeEEE
Q psy17325 295 KIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRW--LFWTDWGEN---------PRIERIGMDGSNRSTI 362 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~--l~~~d~~~~---------~~I~~~~~dG~~~~~l 362 (461)
.|.+.++........+.... +..+++.|.+..||++......+ +|....... ..|...++.......+
T Consensus 155 ~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 234 (337)
T 1pby_B 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred eEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEe
Confidence 25555555443322222222 34456677777787765441111 222221111 0456666654443322
Q ss_pred -eeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeC
Q psy17325 363 -ISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTE 441 (461)
Q Consensus 363 -~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~ 441 (461)
.......|.++++++++++||++ .+.|..+++. ++.....+... .. +..++++.++.+||++..
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~-~~~~~~~~~~~-~~----------~~~~~~s~dg~~l~~~~~ 299 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLE-KNASIKRVPLP-HS----------YYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETT-TTEEEEEEECS-SC----------CCEEEECTTSCEEEEESB
T ss_pred ecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECC-CCcCcceecCC-Cc----------eeeEEECCCCCEEEEEcC
Confidence 12334578899999888899999 4789999993 34433322211 11 123444445667777743
Q ss_pred CCcee
Q psy17325 442 GAEFL 446 (461)
Q Consensus 442 ~~~~i 446 (461)
.+.|
T Consensus 300 -~~~i 303 (337)
T 1pby_B 300 -LGDL 303 (337)
T ss_dssp -SSEE
T ss_pred -CCcE
Confidence 4444
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.9e-11 Score=99.12 Aligned_cols=98 Identities=30% Similarity=0.587 Sum_probs=76.7
Q ss_pred CCCCCCCC--------CCCC-CCCcccCCC-CCCC--CCceeCCCCceEeCCCCCeecCC--------CCceecCcceec
Q psy17325 17 DCPNGADE--------GPGC-DLAECKHKF-GLCS--NTCHPTPLGALCTCPPGEILSND--------SVTCQDMNECEQ 76 (461)
Q Consensus 17 dC~dg~de--------~~~C-~~~~C~~~~-~~C~--~~C~~~~~~~~C~C~~G~~l~~~--------~~~C~d~~eC~~ 76 (461)
.|+.|+-. +..| ++++|.... ..|. ..|++++++|.|.|++||.+... +..|++++||..
T Consensus 22 ~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~ 101 (143)
T 2bou_A 22 RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101 (143)
T ss_dssp EECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHH
T ss_pred eCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccCccC
Confidence 46766532 3578 689998653 3676 47999999999999999987533 458999999984
Q ss_pred -CCccc--CceeeccCCccccCCCCeeeeCCCCceeecccc
Q psy17325 77 -PGYCS--QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114 (461)
Q Consensus 77 -~~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~ 114 (461)
...|. +.|+++.++|.|.|++||.+..+.+.|.+.+++
T Consensus 102 ~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C 142 (143)
T 2bou_A 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142 (143)
T ss_dssp TCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCB
T ss_pred cCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCcc
Confidence 46786 699999999999999999998888888776544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.6e-07 Score=89.78 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=132.7
Q ss_pred EEcCccceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCCC-cEEEEecC---C---CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENGT-NRIVLAKD---N---ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~-~~~~l~~~---~---~~~p~~ia~d~~~g~~~ 207 (461)
+..|. .| ++++.+.++.||+++. ..+.|.+++.... ....+... . ...|++++++|..+ +
T Consensus 63 i~~g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~ 138 (373)
T 2mad_H 63 VNGGF-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--D 138 (373)
T ss_pred ecCCC-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--E
Confidence 33453 46 9999999999999985 3577999998643 22322211 0 14699999999977 9
Q ss_pred EEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
||++.......|..++ ..... +.. -+..|.++.+.+...+.|++....+.
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~--~~~-~i~~~~~~~~~~~~~~~~~~~~~dg~-------------------------- 188 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSS--DDQ-LLSSPTCYHIHPGAPSTFYLLCAQGG-------------------------- 188 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCE--EeE-EcCCCceEEEEeCCCceEEEEcCCCC--------------------------
Confidence 9999844346788887 54322 211 02335556666667777776655432
Q ss_pred CCCCcceeeeEEeCCCCceEEEE-----eCCee--eeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeE
Q psy17325 288 GGNGVPLKIGKANMDGSNASILV-----SGQLY--EALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS 360 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~g~~~~~l~-----~~~~p--~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~ 360 (461)
+...+.+|+...... ....| ...++.+.++.+||... .+.++.+++.+...+
T Consensus 189 --------~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------------~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 189 --------LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-------------SGKILQADISAAGAT 247 (373)
T ss_pred --------EEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC-------------CceEEEEeccCCcce
Confidence 222222222111110 01112 12334445566665542 235555555443222
Q ss_pred EEee---------CCCCCcee---EEEecCCCeEEEEcC---------CCCeEEEEEecCCCCeEEEEEccccceeeccC
Q psy17325 361 TIIS---------TKIYWPNG---LTLDIATRRVYFADS---------KLDFIDFCNYDGTGRQQVILIDLMVEFTNDLM 419 (461)
Q Consensus 361 ~l~~---------~~l~~p~g---laiD~~~~~ly~~d~---------~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~ 419 (461)
++.. .....|.| +++++++++||++.. ..+.|..+|+. ++.....+....
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~-t~~vv~~i~~g~-------- 318 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-VGQTSSQISLGH-------- 318 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC-CCEEEEEEECCC--------
Confidence 2110 11123666 899999999999754 24689999993 344323332111
Q ss_pred CCCCcceEEEeeeCC-EEEEEeCCCcee
Q psy17325 420 GDNGVPALALDLENG-MLYYSTEGAEFL 446 (461)
Q Consensus 420 ~~~~~~~~~l~~~~~-~lYwtd~~~~~i 446 (461)
.+..++++.++. .+|.+.+.++.|
T Consensus 319 ---~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 319 ---DVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred ---CcCeEEECCCCCeEEEEEcCCCCeE
Confidence 123566777777 788888766655
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-11 Score=97.52 Aligned_cols=77 Identities=34% Similarity=0.856 Sum_probs=57.2
Q ss_pred CCcccC--CCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcceecCCcccCceeeccCCccccCCCCeeeeCC-CC
Q psy17325 30 LAECKH--KFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYD-NH 106 (461)
Q Consensus 30 ~~~C~~--~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~~-~~ 106 (461)
+++|.. .+..|...|.+ .++|.|.|++||.+.. +..|++++||.....|.+.|+++.++|.|.|++||.+..+ ++
T Consensus 39 ~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-g~~C~dideC~~~~~C~~~C~n~~g~y~C~C~~G~~g~~~~g~ 116 (118)
T 1dx5_I 39 PHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD-GFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGT 116 (118)
T ss_dssp EEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-TTEEEECCHHHHCSSCSSEEEECSSSEEEEECSSSSCEEEESC
T ss_pred CCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-CCccccccccCCCCCCcCeEEeCCCCEEEECCCCCccCCCCCC
Confidence 345542 23445567777 5788999999998755 7889999999765678788999999999999999976654 44
Q ss_pred ce
Q psy17325 107 TC 108 (461)
Q Consensus 107 ~C 108 (461)
+|
T Consensus 117 ~C 118 (118)
T 1dx5_I 117 DC 118 (118)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-10 Score=102.20 Aligned_cols=80 Identities=26% Similarity=0.564 Sum_probs=36.7
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceec-C-cceec-CCcccCceeeccCCccccCCCCeeeeCCC
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD-M-NECEQ-PGYCSQMCTNTKGSYICSCNEGYVLEYDN 105 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d-~-~eC~~-~~~C~~~C~~~~g~~~C~C~~g~~l~~~~ 105 (461)
++++|..+++.-...|.+..++|.|.|++||. +..|++ + ++|.. +..|.+.|.+..++|.|.|++||.+..++
T Consensus 41 dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~----G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG 116 (195)
T 1nfu_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG 116 (195)
T ss_dssp --------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTS
T ss_pred CCcccCCCCCCCCCEeECCCCCeeEeCCCCce----eccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCC
Confidence 68899865532234799999999999999996 678987 5 89984 46799999999999999999999999999
Q ss_pred Cceeecc
Q psy17325 106 HTCKAIN 112 (461)
Q Consensus 106 ~~C~~~~ 112 (461)
+.|.++.
T Consensus 117 ~~C~~~~ 123 (195)
T 1nfu_B 117 KACIPTG 123 (195)
T ss_dssp SCEEESS
T ss_pred CccccCC
Confidence 9998764
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-10 Score=91.24 Aligned_cols=67 Identities=30% Similarity=0.553 Sum_probs=57.5
Q ss_pred CceeCCCCceEeCCCCCeecCCCCceecC---ccee-cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccc
Q psy17325 43 TCHPTPLGALCTCPPGEILSNDSVTCQDM---NECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 43 ~C~~~~~~~~C~C~~G~~l~~~~~~C~d~---~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
.|++..++|.|.|++||. +..|+++ ++|. .++.|.+.|.++.++|.|.|++||.+..+++.|.++.+
T Consensus 27 ~C~~~~~~y~C~C~~G~~----G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~~ 97 (114)
T 1aut_L 27 TCIDGIGSFSCDCRSGWE----GRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 97 (114)
T ss_dssp EECCCSSCCCEEECTTEE----STTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred CCCCCCCCcEeeCCCCCc----CCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCcc
Confidence 588899999999999996 5669875 4687 35679999999999999999999999999999987543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-07 Score=91.00 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=103.0
Q ss_pred CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC--CCCcEEEEe-cccccceeEEeeccCCee--EEecCCCceeee
Q psy17325 190 NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD--GSNRSTIIS-TKIYWPNGLTLDIATRRV--YFADSKLDFIDC 264 (461)
Q Consensus 190 ~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d--G~~~~~i~~-~~~~~P~glavD~~~~~l--y~~d~~~~~i~~ 264 (461)
....|..++++|... +||.++.. .|...+++ |... .+.. .....|..+++++.++.| |.++... +..
T Consensus 38 ~~~~~~~~a~spdg~--~l~~~~~~---~v~~~~~~~~g~~~-~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~--~~~ 109 (365)
T 1jof_A 38 QDEPISWMTFDHERK--NIYGAAMK---KWSSFAVKSPTEIV-HEASHPIGGHPRANDADTNTRAIFLLAAKQPP--YAV 109 (365)
T ss_dssp TTCCCSEEEECTTSS--EEEEEEBT---EEEEEEEEETTEEE-EEEEEECCSSGGGGCTTSCCEEEEEEECSSTT--CCE
T ss_pred CCCCCcEEEECCCCC--EEEEEccc---eEEEEEECCCCCEE-EeeEeecCCCCccEEECCCCCEEEEEEecCCc--cee
Confidence 345799999999876 89998843 66666664 4322 2222 111358889999877754 4444110 000
Q ss_pred cccceeeeeccceeeeEEEEEecCCCCcceeeeE--EeCCCCceEEEEe----CCe-eeeEEEeccCCeEEEeecCceee
Q psy17325 265 KSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK--ANMDGSNASILVS----GQL-YEALALDLENGMLYYSTLKCTRW 337 (461)
Q Consensus 265 ~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~--~~~~g~~~~~l~~----~~~-p~~iavd~~~~~lY~t~~~~~~~ 337 (461)
+.+-+|- .. +.+.+ .+.+|+....+.. ... |.+++++|.++.||+++.+
T Consensus 110 --------------~~~~~~~--~~----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~---- 165 (365)
T 1jof_A 110 --------------YANPFYK--FA----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT---- 165 (365)
T ss_dssp --------------EEEEESS--SC----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----
T ss_pred --------------ccceeec--CC----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC----
Confidence 0000000 00 12333 3334544333321 222 9999999998889988766
Q ss_pred EEEeecCCCCceEEEeec--CCCeEE-Eee-C-CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecC-CCCe
Q psy17325 338 LFWTDWGENPRIERIGMD--GSNRST-IIS-T-KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDG-TGRQ 403 (461)
Q Consensus 338 l~~~d~~~~~~I~~~~~d--G~~~~~-l~~-~-~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g-~g~~ 403 (461)
..+|...+++ |+...+ .+. . ....|.++++++++++||+++...+.|..++++. +|..
T Consensus 166 --------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 166 --------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp --------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred --------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 5677777775 332211 111 1 2457999999988889999988888998888743 3543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.9e-08 Score=95.64 Aligned_cols=248 Identities=13% Similarity=0.068 Sum_probs=142.5
Q ss_pred EEcCccceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCCCc-EEEEecC---C---CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENGTN-RIVLAKD---N---ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~~-~~~l~~~---~---~~~p~~ia~d~~~g~~~ 207 (461)
+..|. .| ++++++.++.||+++. ..+.|.++|..... ...+... . ...|.+++++|..+ +
T Consensus 115 I~vG~-~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk--~ 190 (426)
T 3c75_H 115 TDGGF-LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK--N 190 (426)
T ss_dssp EEECS-SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS--E
T ss_pred EECCC-CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC--E
Confidence 34454 58 9999999999999996 45789999976544 3333221 0 24699999999987 9
Q ss_pred EEEeecCCCCcEEEEecCCCCcE-EEEecc--ccccee----EEeeccCCeeEEecCCCceeeec-----ccceee---e
Q psy17325 208 LFWTDWGENPRIERIGMDGSNRS-TIISTK--IYWPNG----LTLDIATRRVYFADSKLDFIDCK-----SLEIKT---N 272 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~~-~i~~~~--~~~P~g----lavD~~~~~ly~~d~~~~~i~~~-----~~~~~~---~ 272 (461)
||++++.....|..+++...... .|-..+ ...|.| +++...+. ++|.+.....+... ....+. .
T Consensus 191 lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~-~~~V~~~~~~v~~~~~~~~~v~~~p~~~~ 269 (426)
T 3c75_H 191 LLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGS-LARVDFADGETKVTNTEVFHTEDELLINH 269 (426)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSS-EEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred EEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCC-EEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence 99998543568888888753322 221111 122444 55655443 43333343332210 000000 0
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe------C----Ce-eee---EEEeccCCeEEEeecCceeeE
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS------G----QL-YEA---LALDLENGMLYYSTLKCTRWL 338 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~------~----~~-p~~---iavd~~~~~lY~t~~~~~~~l 338 (461)
+.+....+.+|++... +++++++..+....++.. . .. |.+ +++++.+++||+++... -
T Consensus 270 ~~~~~dg~~~~~~s~~-----g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~---~ 341 (426)
T 3c75_H 270 PAFSLRSGRLVWPTYT-----GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR---D 341 (426)
T ss_dssp CEECTTTCEEEEEBTT-----SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC---C
T ss_pred eeecCCCCEEEEEeCC-----CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc---c
Confidence 0001112355665432 368888887665443321 0 11 555 99999999999986420 0
Q ss_pred EEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC-eEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR-RVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 339 ~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~-~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
.++.....+.|...++.-.....-+ .--..|.+|+++++++ +||++....+.|..+|+. ++.....
T Consensus 342 ~gthk~~s~~VsVID~~T~kvv~~I-~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~-t~kvv~t 408 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGERINKI-ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA-TGEELRS 408 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETT-TCCEEEE
T ss_pred cccccCCCCEEEEEECCCCeEEEEE-ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC-CCCEEEE
Confidence 0000001234655555433222111 1112599999998888 999999999999999993 5555433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-07 Score=83.58 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=116.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCC--eEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLN--RIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~--~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
...||+++ ++.||.+....+ +|.++++. |+....+.-..-.-..||+++ .+ .||.+.|.+ ..+...+.+.
T Consensus 44 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~--~ly~ltw~~-~~v~v~D~~t 116 (262)
T 3nol_A 44 FTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KD--KIVGLTWKN-GLGFVWNIRN 116 (262)
T ss_dssp EEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TT--EEEEEESSS-SEEEEEETTT
T ss_pred ccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CC--EEEEEEeeC-CEEEEEECcc
Confidence 34889998 689999987655 89999976 444443322221123556776 45 899999754 5888888865
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.....-+... ..+.||+- .+++||.+|. ++. |++.|.....+..+|.+
T Consensus 117 ~~~~~ti~~~-~eG~glt~--dg~~L~~SdG-s~~--------------------i~~iDp~T~~v~~~I~V-------- 164 (262)
T 3nol_A 117 LRQVRSFNYD-GEGWGLTH--NDQYLIMSDG-TPV--------------------LRFLDPESLTPVRTITV-------- 164 (262)
T ss_dssp CCEEEEEECS-SCCCCEEE--CSSCEEECCS-SSE--------------------EEEECTTTCSEEEEEEC--------
T ss_pred CcEEEEEECC-CCceEEec--CCCEEEEECC-CCe--------------------EEEEcCCCCeEEEEEEe--------
Confidence 4332222221 13445554 4899999996 432 34444443211111111
Q ss_pred EEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEEEeeC-----------CCCCc
Q psy17325 307 SILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRSTIIST-----------KIYWP 370 (461)
Q Consensus 307 ~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~~-----------~l~~p 370 (461)
...+. ++.+.. .+|+||.+... ...|.+.+. +|+-...|-.. ...-|
T Consensus 165 ---~~~g~~~~~lNELe~--~~G~lyan~w~------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl 227 (262)
T 3nol_A 165 ---TAHGEELPELNELEW--VDGEIFANVWQ------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL 227 (262)
T ss_dssp ---EETTEECCCEEEEEE--ETTEEEEEETT------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred ---ccCCccccccceeEE--ECCEEEEEEcc------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence 11111 334443 47888877655 456666665 33333333222 23468
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+|||+|+.+++||++...=.+++.+.+
T Consensus 228 NGIA~dp~~~~lfVTGK~Wp~~~ev~~ 254 (262)
T 3nol_A 228 NGIAWDKEHHRLFVTGKLWPKVFEITL 254 (262)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCceEEEEE
Confidence 999999999999999888888988887
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.7e-08 Score=87.78 Aligned_cols=191 Identities=14% Similarity=0.135 Sum_probs=117.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
...||.++ ++.||.+....++|.++++. |+....++... .-..||+++ .+ .||.+.|.+ ..+...+.+...
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~-~FgeGit~~--g~--~Ly~ltw~~-~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGN-IFAEGLASD--GE--RLYQLTWTE-GLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTT-CCEEEEEEC--SS--CEEEEESSS-CEEEEEETTTTE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCC-cceeEEEEe--CC--EEEEEEccC-CEEEEEECCcCc
Confidence 34788887 68999999999999999975 55444443321 123557776 34 899999754 588888876433
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
...-+... ..+.||+-| +++||.+|. ++. |++.|.....+..+|.+
T Consensus 128 ~~~ti~~~-~eGwGLt~D--g~~L~vSdG-s~~--------------------l~~iDp~T~~v~~~I~V---------- 173 (268)
T 3nok_A 128 RERTTRYS-GEGWGLCYW--NGKLVRSDG-GTM--------------------LTFHEPDGFALVGAVQV---------- 173 (268)
T ss_dssp EEEEEECS-SCCCCEEEE--TTEEEEECS-SSE--------------------EEEECTTTCCEEEEEEC----------
T ss_pred EEEEEeCC-CceeEEecC--CCEEEEECC-CCE--------------------EEEEcCCCCeEEEEEEe----------
Confidence 22222221 234566655 799999995 433 34444333211111111
Q ss_pred EEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEEEeeC------------CCCCce
Q psy17325 309 LVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRSTIIST------------KIYWPN 371 (461)
Q Consensus 309 l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~~------------~l~~p~ 371 (461)
...+. ++.|. +.+|+||.+... ...|.+.+. +|+-...|-.. ...-|+
T Consensus 174 -~~~g~~v~~lNeLe--~~dG~lyanvw~------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 174 -KLRGQPVELINELE--CANGVIYANIWH------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp -EETTEECCCEEEEE--EETTEEEEEETT------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred -CCCCcccccccccE--EeCCEEEEEECC------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 11111 34444 447888877655 556777765 33333333211 234689
Q ss_pred eEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 372 GLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 372 glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
|||+|+.+++||++...=.+++.+.+
T Consensus 239 GIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp EEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 99999999999999888888888877
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-06 Score=79.79 Aligned_cols=193 Identities=17% Similarity=0.118 Sum_probs=115.8
Q ss_pred cceeeeeeeecCCeEEEEeCCC--CeEEEEeCCC-CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRL--NRIEVCDENG-TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~--~~I~~~~~~G-~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
....|++++ .+.||.+.... .+|.++++.. +....+.-....-+.||+++ .+ .||...|.+ .++...+.+
T Consensus 21 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~--~ly~ltw~~-~~v~v~D~~ 93 (243)
T 3mbr_X 21 AFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RD--RLIQLTWRN-HEGFVYDLA 93 (243)
T ss_dssp CCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT--EEEEEESSS-SEEEEEETT
T ss_pred cccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CC--EEEEEEeeC-CEEEEEECC
Confidence 456899998 48999997764 5899999764 44333322222224566666 45 899999764 588888886
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
......-+... ..+.||+ +.+++||.+|. ++. |+..|.....+..+|.+
T Consensus 94 tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdg-s~~--------------------l~~iDp~t~~~~~~I~V------- 142 (243)
T 3mbr_X 94 TLTPRARFRYP-GEGWALT--SDDSHLYMSDG-TAV--------------------IRKLDPDTLQQVGSIKV------- 142 (243)
T ss_dssp TTEEEEEEECS-SCCCEEE--ECSSCEEEECS-SSE--------------------EEEECTTTCCEEEEEEC-------
T ss_pred cCcEEEEEeCC-CCceEEe--eCCCEEEEECC-CCe--------------------EEEEeCCCCeEEEEEEE-------
Confidence 43322222221 2344555 55899999996 433 23333322111111111
Q ss_pred eEEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEEEeeC------------CCC
Q psy17325 306 ASILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRSTIIST------------KIY 368 (461)
Q Consensus 306 ~~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~~------------~l~ 368 (461)
...+. ++. +++.+|+||..... ...|.+.+. +|+-...+-.. ...
T Consensus 143 ----~~~g~~~~~lNe--Le~~~G~lyanvw~------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~ 204 (243)
T 3mbr_X 143 ----TAGGRPLDNLNE--LEWVNGELLANVWL------------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTND 204 (243)
T ss_dssp ----EETTEECCCEEE--EEEETTEEEEEETT------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred ----ccCCccccccee--eEEeCCEEEEEECC------------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence 11111 233 44558888876655 456666665 33333333211 234
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
-|+|||+|+.+++||++...=.+++.+.+
T Consensus 205 vlNGIA~d~~~~~lfVTGK~wp~~~~v~~ 233 (243)
T 3mbr_X 205 VLNGIAFDAEHDRLFVTGKRWPMLYEIRL 233 (243)
T ss_dssp CEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence 68999999999999999888889999888
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-07 Score=86.51 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
|+++. .++.+|++....++|.+.++........+. .....|.+++++|..+ ++|++. .....|...+++......
T Consensus 4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~~~v~~-~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLN-NHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEE-TTTTEEEEEETTTTEEEE
T ss_pred ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC--EEEEEe-CCCCcEEEEeCCCCcEEE
Confidence 45554 467899999999999999987554333332 2222699999999876 899988 455789999887543332
Q ss_pred EEec-c-----cccceeEEeeccCCeeEEecCC
Q psy17325 232 IIST-K-----IYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 232 i~~~-~-----~~~P~glavD~~~~~ly~~d~~ 258 (461)
.+.. . ...|.++++++.++.||++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred EEEcccccccccccccceEECCCCCEEEEEccc
Confidence 2221 1 2248999999989999988743
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-10 Score=94.81 Aligned_cols=81 Identities=26% Similarity=0.552 Sum_probs=36.9
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceec-C-cceec-CCcccCceeeccCCccccCCCCeeeeCCC
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD-M-NECEQ-PGYCSQMCTNTKGSYICSCNEGYVLEYDN 105 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d-~-~eC~~-~~~C~~~C~~~~g~~~C~C~~g~~l~~~~ 105 (461)
++++|..++..-...|.+..++|.|.|++||. +..|++ + ++|.. +..|.+.|.++.++|.|.|++||.+..++
T Consensus 41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~----G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g 116 (134)
T 2vh0_B 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG 116 (134)
T ss_dssp --------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTS
T ss_pred CcCcCCCCCCCCcCCcccCCCCEEeeCCCCcc----CCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCC
Confidence 67888765422234799999999999999996 678988 6 88974 45798999999999999999999999999
Q ss_pred Cceeeccc
Q psy17325 106 HTCKAINH 113 (461)
Q Consensus 106 ~~C~~~~~ 113 (461)
+.|.++++
T Consensus 117 ~~C~~~~~ 124 (134)
T 2vh0_B 117 KACIPTGP 124 (134)
T ss_dssp SCEEESSS
T ss_pred CccCcCCC
Confidence 99987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.7e-07 Score=92.38 Aligned_cols=194 Identities=10% Similarity=0.014 Sum_probs=131.1
Q ss_pred eeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCCcE-EE
Q psy17325 155 AYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSNRS-TI 232 (461)
Q Consensus 155 avd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~~~-~i 232 (461)
++++ .+.+|++....+.|.+.+.........+... ..|.+++++|..+ +||.++.. ..|...+++ .+... .-
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-~~~~~v~~spdg~--~l~v~~~d--~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGR--YLLVIGRD--ARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECS-TTEEEEEECTTSC--EEEEEETT--SEEEEEETTSSSCEEEEE
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecC-cccceEEECCCCC--EEEEECCC--CeEEEEECcCCCCcEEEE
Confidence 4665 5689999999999999997654443333323 2389999999977 99999843 789999984 12221 11
Q ss_pred EecccccceeEEeec----cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC-CceE
Q psy17325 233 ISTKIYWPNGLTLDI----ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SNAS 307 (461)
Q Consensus 233 ~~~~~~~P~glavD~----~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~~~ 307 (461)
+. .-..|.++++++ .+++||.+....+.| .+.+... +...
T Consensus 218 i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v----------------------------------~v~D~~t~~~~~ 262 (543)
T 1nir_A 218 IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQF----------------------------------AIMDGETLEPKQ 262 (543)
T ss_dssp EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEE----------------------------------EEEETTTCCEEE
T ss_pred Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeE----------------------------------EEEeccccccce
Confidence 22 234799999999 899999988655433 2333221 1112
Q ss_pred EEEe-----------CC-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEE-EeeCCCCCceeE
Q psy17325 308 ILVS-----------GQ-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRST-IISTKIYWPNGL 373 (461)
Q Consensus 308 ~l~~-----------~~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~-l~~~~l~~p~gl 373 (461)
++-. .. .+.+|++.+.++.+|++... .++|...+... ....+ .+ ..-.+|.++
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~ 329 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVTSI-GAAPFLHDG 329 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEEEEE-ECCSSCCCE
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCcceeEEe-ccCcCccCc
Confidence 2111 11 26788999888888888766 66777777643 22221 22 234679999
Q ss_pred EEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 374 aiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
++|+++++||++....++|..+++. +|..
T Consensus 330 ~~spdg~~l~va~~~~~~v~v~D~~-tg~l 358 (543)
T 1nir_A 330 GWDSSHRYFMTAANNSNKVAVIDSK-DRRL 358 (543)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETT-TTEE
T ss_pred eECCCCCEEEEEecCCCeEEEEECC-CCeE
Confidence 9998888899998888999999993 5544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-07 Score=88.67 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=131.0
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCC------CeEEEEeCCCCc-EEEEecCCCC--CceeEEEcCCCCceEEEEeecC-
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRL------NRIEVCDENGTN-RIVLAKDNIT--QPRGMMLDPSPGTRWLFWTDWG- 214 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~------~~I~~~~~~G~~-~~~l~~~~~~--~p~~ia~d~~~g~~~ly~td~~- 214 (461)
..|...|.++..-+.+ ||++..++ +.|.+.|..... ...+-..... -+..+.+.|..+ .||.++|+
T Consensus 134 ~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~ 209 (462)
T 2ece_A 134 VSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE--VLVSSEWAV 209 (462)
T ss_dssp HHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT--EEEECBCCC
T ss_pred ccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC--EEEEccCcC
Confidence 3466678888887544 99987766 789999977544 3333222111 233466688877 99999985
Q ss_pred ----------------CCCcEEEEecCCCCcEEEEec--ccccceeEEe--eccCCeeEEecC-----CCceeeecccce
Q psy17325 215 ----------------ENPRIERIGMDGSNRSTIIST--KIYWPNGLTL--DIATRRVYFADS-----KLDFIDCKSLEI 269 (461)
Q Consensus 215 ----------------~~~~I~~~~~dG~~~~~i~~~--~~~~P~glav--D~~~~~ly~~d~-----~~~~i~~~~~~~ 269 (461)
...+|...+++......-+.. .-..|..|++ ++.++.+|++.. .++.|.
T Consensus 210 p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~------ 283 (462)
T 2ece_A 210 PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIW------ 283 (462)
T ss_dssp HHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEE------
T ss_pred ccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEE------
Confidence 246888888875321111221 1136888766 998999999887 665442
Q ss_pred eeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce-EEEE--------eCCeeeeEEEeccCCeEEEeecCceeeEEE
Q psy17325 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-SILV--------SGQLYEALALDLENGMLYYSTLKCTRWLFW 340 (461)
Q Consensus 270 ~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~-~~l~--------~~~~p~~iavd~~~~~lY~t~~~~~~~l~~ 340 (461)
+|+-|.+.. ..+.++++..... ..+- ....|.+|++.+.+++||+++.+
T Consensus 284 ------------v~~~d~g~~---~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg------- 341 (462)
T 2ece_A 284 ------------LWFYEDGKW---NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG------- 341 (462)
T ss_dssp ------------EEEEETTEE---EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT-------
T ss_pred ------------EEEecCCce---eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC-------
Confidence 122222110 1112211111000 0000 01238999999999999998877
Q ss_pred eecCCCCceEEEeec-CCCeEEEe--eCC-C-------------CCceeEEEecCCCeEEEEcC-------------CCC
Q psy17325 341 TDWGENPRIERIGMD-GSNRSTII--STK-I-------------YWPNGLTLDIATRRVYFADS-------------KLD 390 (461)
Q Consensus 341 ~d~~~~~~I~~~~~d-G~~~~~l~--~~~-l-------------~~p~glaiD~~~~~ly~~d~-------------~~~ 390 (461)
.+.|...+++ ....+.+. ..+ . ..|.++++++++++||++.. ...
T Consensus 342 -----~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~ 416 (462)
T 2ece_A 342 -----IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKG 416 (462)
T ss_dssp -----TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCC
T ss_pred -----CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCce
Confidence 6677777763 32333221 111 1 26999999999999999982 445
Q ss_pred eEEEEEecCC
Q psy17325 391 FIDFCNYDGT 400 (461)
Q Consensus 391 ~I~~~~~~g~ 400 (461)
.+.+++.|.+
T Consensus 417 ~~~~~~vd~~ 426 (462)
T 2ece_A 417 WMVKLNANPS 426 (462)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEecCC
Confidence 6666666433
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.6e-10 Score=105.77 Aligned_cols=82 Identities=32% Similarity=0.707 Sum_probs=67.6
Q ss_pred CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee-cCcceec--CCcccCceeeccCCccccCCCCeeeeCCCC
Q psy17325 30 LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ-DMNECEQ--PGYCSQMCTNTKGSYICSCNEGYVLEYDNH 106 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~-d~~eC~~--~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~ 106 (461)
.++|..+++.-...|.+..++|.|.|++||. +..|+ +++||.. ...|.+.|.|..++|.|.|++||.+..+.+
T Consensus 5 ~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~----g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~ 80 (317)
T 3h5c_B 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYE----GSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHK 80 (317)
T ss_dssp -CCTTSCCCTTTCCCCCCSSSCCCCCSSSCC----SSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSS
T ss_pred CCcCCCCCCCCCCEeECCCCCeEEECCCCCc----CCccccCcccCCCCCCCCCcCccccCCCeeEEecccccccccccc
Confidence 4566655533334688889999999999995 77998 9999985 368999999999999999999999988889
Q ss_pred ceeeccccc
Q psy17325 107 TCKAINHSA 115 (461)
Q Consensus 107 ~C~~~~~~~ 115 (461)
.|.+.+++.
T Consensus 81 ~C~~~~~c~ 89 (317)
T 3h5c_B 81 QCVPHDQCA 89 (317)
T ss_dssp CCEECSSCC
T ss_pred ccccccccc
Confidence 998877653
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=92.02 Aligned_cols=79 Identities=28% Similarity=0.656 Sum_probs=66.2
Q ss_pred CCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCceec-Ccce---e-cCCcccCceeeccC-CccccCCCCee
Q psy17325 29 DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQD-MNEC---E-QPGYCSQMCTNTKG-SYICSCNEGYV 100 (461)
Q Consensus 29 ~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~d-~~eC---~-~~~~C~~~C~~~~g-~~~C~C~~g~~ 100 (461)
++++|..++ |.+ .|.+..++|.|.|++||. +..|++ +++| . .++.|.+.|.++.+ +|.|.|++||.
T Consensus 46 did~C~~~p--C~n~g~C~~~~g~y~C~C~~G~~----G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~ 119 (142)
T 2c4f_L 46 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFE----GRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS 119 (142)
T ss_dssp TCCGGGGCC--CCTTCEEEEETTEEEEECCTTEE----STTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEE
T ss_pred ccCcCcCCC--cCCCCEEeCCCCCEEeeCCCCcc----CCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCce
Confidence 577887554 654 799999999999999996 678986 5775 2 35678889999999 99999999999
Q ss_pred eeCCCCceeeccc
Q psy17325 101 LEYDNHTCKAINH 113 (461)
Q Consensus 101 l~~~~~~C~~~~~ 113 (461)
+..+++.|.++++
T Consensus 120 l~~dG~~C~~~~e 132 (142)
T 2c4f_L 120 LLADGVSCTPTVE 132 (142)
T ss_dssp ECTTSSCEEESSS
T ss_pred ECCCCCCCCCCCc
Confidence 9999999988765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-07 Score=92.22 Aligned_cols=267 Identities=13% Similarity=0.030 Sum_probs=145.0
Q ss_pred eEEEcCccceeeeeeeecCC-eEEEEeCCCCeEEEEeCCCCcE-EEE------ecCC-----CCCceeEEEcCC---CCc
Q psy17325 142 DIVVSGLDLVEGLAYDWIGG-HIYWLDSRLNRIEVCDENGTNR-IVL------AKDN-----ITQPRGMMLDPS---PGT 205 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~-~ly~~d~~~~~I~~~~~~G~~~-~~l------~~~~-----~~~p~~ia~d~~---~g~ 205 (461)
..++.+|..|.+|++.+.+. +||+++. .++|.+++.+|... +.+ +... ..-+.+||++|. ++
T Consensus 7 ~~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~- 84 (463)
T 2wg3_C 7 QEVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG- 84 (463)
T ss_dssp EEEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-
T ss_pred EEeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-
Confidence 35677899999999998764 7999987 58999998877531 111 1111 234678999996 57
Q ss_pred eEEEEeecCC-----------CCcEEEEecCCC--------CcEEEEec----ccccceeEEeeccCCeeEEecCCCcee
Q psy17325 206 RWLFWTDWGE-----------NPRIERIGMDGS--------NRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFI 262 (461)
Q Consensus 206 ~~ly~td~~~-----------~~~I~~~~~dG~--------~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i 262 (461)
+||++-... ..+|.|..++.. ..++|+.. .......|++++ .++||++-......
T Consensus 85 -~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~ 162 (463)
T 2wg3_C 85 -KLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMIT 162 (463)
T ss_dssp -EEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCC
T ss_pred -EEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCC
Confidence 788774211 137888887531 12444431 234566799997 56999986544211
Q ss_pred eecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-------------------eEEEEeCCe--eeeEEEe
Q psy17325 263 DCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-------------------ASILVSGQL--YEALALD 321 (461)
Q Consensus 263 ~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-------------------~~~l~~~~~--p~~iavd 321 (461)
.... .+ -+......++|.|+++||+. +..++..++ |.+|++|
T Consensus 163 ~~~~-~~----------------~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~d 225 (463)
T 2wg3_C 163 LDDM-EE----------------MDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVD 225 (463)
T ss_dssp HHHH-HH----------------CTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEE
T ss_pred CCcc-cc----------------ccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEEC
Confidence 0000 00 00000112589999999951 223444455 9999999
Q ss_pred ccCC------eEEEeecCceeeEEEeecCCCCceEEEeecCCC----eEEEeeCCC--CCceeEEEec------CCCeEE
Q psy17325 322 LENG------MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN----RSTIISTKI--YWPNGLTLDI------ATRRVY 383 (461)
Q Consensus 322 ~~~~------~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~----~~~l~~~~l--~~p~glaiD~------~~~~ly 383 (461)
|..+ .||.+|.. + ++....+|..+.. |.+ .-++....- ..|.|+++-. ..+.++
T Consensus 226 p~tg~~~G~l~~~~~D~~--G-----~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f 297 (463)
T 2wg3_C 226 RHPTDININLTILCSDSN--G-----KNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV 297 (463)
T ss_dssp SSCSSTTCSEEEEEECC-------------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE
T ss_pred CCCCCcccceEEEecccC--C-----CCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE
Confidence 9754 45555541 0 0000123444321 221 112221111 4688999821 235689
Q ss_pred EEcCCCCeEEEEEecCCCCe--EEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeC
Q psy17325 384 FADSKLDFIDFCNYDGTGRQ--QVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTE 441 (461)
Q Consensus 384 ~~d~~~~~I~~~~~~g~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~ 441 (461)
++|.. ++|.++.++..+.. ...+....... ........+++++.. +|.||+++.
T Consensus 298 ~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 298 FGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGS---CRGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp EEETT-SCEEEEEC-----CCEEEEECEEETTS---SCSCCCSEEEEEEECTTCCEEEEEE
T ss_pred EecCC-CcEEEEEeCCCCceeeEEEeecCCccc---ccccccCcceEEEECCCCCEEEEec
Confidence 99987 78999998543321 12221110000 000111236777776 579999997
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=8.8e-07 Score=91.47 Aligned_cols=201 Identities=11% Similarity=0.076 Sum_probs=130.0
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCCCeEEEEeC--C-CCcEEEEecCCCCCceeEEEcC----CCCceEEEEeecCCCC
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDE--N-GTNRIVLAKDNITQPRGMMLDP----SPGTRWLFWTDWGENP 217 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~--~-G~~~~~l~~~~~~~p~~ia~d~----~~g~~~ly~td~~~~~ 217 (461)
..+.. |.++++++.++.||+++.. +.|.+.++ . ++....+. .+ ..|++++++| ..+ +||.+.. ...
T Consensus 176 ~~g~~-~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~-~g-~~p~~va~sp~~~~dg~--~l~v~~~-~~~ 248 (543)
T 1nir_A 176 DTGYA-VHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIK-IG-IEARSVESSKFKGYEDR--YTIAGAY-WPP 248 (543)
T ss_dssp ECSTT-EEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEE-CC-SEEEEEEECCSTTCTTT--EEEEEEE-ESS
T ss_pred ecCcc-cceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEe-cC-CCcceEEeCCCcCCCCC--EEEEEEc-cCC
Confidence 33443 8899999999999999987 99999999 3 33333333 22 4699999999 877 9999873 235
Q ss_pred cEEEEecCCCCcEEEEec-c----------cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 218 RIERIGMDGSNRSTIIST-K----------IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 218 ~I~~~~~dG~~~~~i~~~-~----------~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
.|..++.........+.. . -.+|.++++.+.++.+|++....+.
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~------------------------- 303 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK------------------------- 303 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE-------------------------
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe-------------------------
Confidence 777776654333222322 1 1156788888888888888776643
Q ss_pred cCCCCcceeeeEEeCCC-CceE--EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe
Q psy17325 287 EGGNGVPLKIGKANMDG-SNAS--ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g-~~~~--~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~ 363 (461)
|...+... +... .+-....|++++++|.+++||.+... .++|...+.........+
T Consensus 304 ---------i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~------------~~~v~v~D~~tg~l~~~i 362 (543)
T 1nir_A 304 ---------VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN------------SNKVAVIDSKDRRLSALV 362 (543)
T ss_dssp ---------EEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEEEE
T ss_pred ---------EEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC------------CCeEEEEECCCCeEEEee
Confidence 45555432 2222 22222239999999999999988766 556666665433222222
Q ss_pred e-CCCCCc-eeEEE-ecCCCeEEEEcC-CCCeEEEEEec
Q psy17325 364 S-TKIYWP-NGLTL-DIATRRVYFADS-KLDFIDFCNYD 398 (461)
Q Consensus 364 ~-~~l~~p-~glai-D~~~~~ly~~d~-~~~~I~~~~~~ 398 (461)
. ....+| .|..+ ++..+++|++.. +.++|..++++
T Consensus 363 ~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 363 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp ECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC
Confidence 2 222233 35554 556689998865 56899999995
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-07 Score=89.23 Aligned_cols=250 Identities=7% Similarity=-0.071 Sum_probs=143.2
Q ss_pred cCCeEEEEeCCCC----eEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC--------CCCcEEEEecCC
Q psy17325 159 IGGHIYWLDSRLN----RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG--------ENPRIERIGMDG 226 (461)
Q Consensus 159 ~~~~ly~~d~~~~----~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~--------~~~~I~~~~~dG 226 (461)
....+|+++...+ +|.++|++......-+..+ ..| ++++.|..+ +||+++.. ....|..+++..
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-~~P-~i~~spDg~--~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-FLS-LAVAGHSGS--DFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-TTC-EEEECTTSS--CEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCC-CCC-ceEECCCCC--EEEEEcccccccccCCCCCEEEEEECCC
Confidence 3578999999877 8889998765543333333 358 999999988 99999731 135788888875
Q ss_pred CCc-EEEEec------ccccceeEEeeccCCeeEEecCC-Cceeee--cccceeeeeccc------eeeeEEEEEecCCC
Q psy17325 227 SNR-STIIST------KIYWPNGLTLDIATRRVYFADSK-LDFIDC--KSLEIKTNVNYS------TIFRKLYWIDEGGN 290 (461)
Q Consensus 227 ~~~-~~i~~~------~~~~P~glavD~~~~~ly~~d~~-~~~i~~--~~~~~~~~v~~~------~~~~~~yw~d~~~~ 290 (461)
... ..|... ....|.+|++++.+++||+++.. .+.+.. ++....+.|... .-.+..|.+....
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~d- 184 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCP- 184 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCT-
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCC-
Confidence 443 333221 02469999999999999999865 455555 555433333221 1122344443333
Q ss_pred CcceeeeEEeCCC----CceEEEE------eCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe
Q psy17325 291 GVPLKIGKANMDG----SNASILV------SGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR 359 (461)
Q Consensus 291 ~~~~~I~~~~~~g----~~~~~l~------~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~ 359 (461)
+++...+++. .. +++. .-+. |. + .+..+.+||+.. +.+..++..+...
T Consensus 185 ---g~~~~vd~~~~~~~~~-~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--------------~~V~viD~~~~~~ 243 (368)
T 1mda_H 185 ---ASLAASDLAAAPAAAG-IVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--------------SSILQGDIPAAGA 243 (368)
T ss_dssp ---TSCEEEECCSSCCCCE-ECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--------------SCCEEEECCSSCC
T ss_pred ---CCEEEEECccccccCC-eEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--------------CEEEEEECCCCcc
Confidence 2344444443 11 1110 0011 55 3 555666665432 3555555544333
Q ss_pred EEEeeC---------CCCCcee---EEEecCCCeEEEEcC---C-----CCeEEEEEecCCCCeEEEEEccccceeeccC
Q psy17325 360 STIIST---------KIYWPNG---LTLDIATRRVYFADS---K-----LDFIDFCNYDGTGRQQVILIDLMVEFTNDLM 419 (461)
Q Consensus 360 ~~l~~~---------~l~~p~g---laiD~~~~~ly~~d~---~-----~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~ 419 (461)
+++..- ....|.| +++++++++||++.. + .+.+..+|+. ++.....+.. +..
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-t~~vv~~i~v---g~~---- 315 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPISN---GHD---- 315 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECCEE---EEE----
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECC-CCeEEEEEEC---CCC----
Confidence 332211 1224666 899999999999854 3 2456688883 3433222211 111
Q ss_pred CCCCcceEEEeeeCCEEEEEeC-CCcee
Q psy17325 420 GDNGVPALALDLENGMLYYSTE-GAEFL 446 (461)
Q Consensus 420 ~~~~~~~~~l~~~~~~lYwtd~-~~~~i 446 (461)
+..++++.++.++|++.. .++.|
T Consensus 316 ----p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 316 ----SDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp ----ECEEEECCSSSCEEEEEETTTTEE
T ss_pred ----cceEEECCCCCEEEEEccCCCCeE
Confidence 224556666677999988 57665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=8.1e-08 Score=93.89 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=134.2
Q ss_pred EEcCccceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCCCc-EEEEecC-C-----CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENGTN-RIVLAKD-N-----ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~~-~~~l~~~-~-----~~~p~~ia~d~~~g~~~ 207 (461)
+..|. .| ++++++.++.+|+++. ..+.|.++|+.... ...+... . ...|++++++|..+ +
T Consensus 62 i~vG~-~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk--~ 137 (368)
T 1mda_H 62 SLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA--C 137 (368)
T ss_dssp EEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS--C
T ss_pred EeCCC-CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC--E
Confidence 34454 47 9999999999999984 46889999976544 3333222 1 24699999999977 9
Q ss_pred EEEeecCCCCcEEE--EecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce----eeeec-------
Q psy17325 208 LFWTDWGENPRIER--IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI----KTNVN------- 274 (461)
Q Consensus 208 ly~td~~~~~~I~~--~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~----~~~v~------- 274 (461)
||++++.....+.. +++.. ...+- .|.++.+.+..+++|++....+.+..++.+. ...+.
T Consensus 138 lyVan~~~~~~v~V~~iD~~t--v~~i~-----v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i 210 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGASD--DQLTK-----SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ 210 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEE--EEEEE-----CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred EEEEccCCCCeEEEEEEchhh--ceEEE-----CCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence 99998543445666 44443 22221 1222333444555555544443333333221 00000
Q ss_pred -c------ceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe----------CCe-eee---EEEeccCCeEEEeecC
Q psy17325 275 -Y------STIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS----------GQL-YEA---LALDLENGMLYYSTLK 333 (461)
Q Consensus 275 -~------~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~----------~~~-p~~---iavd~~~~~lY~t~~~ 333 (461)
. ..-.+.+||+.. . .+.+++..+...+++.. ... |.+ +++++.+++||++...
T Consensus 211 ~vg~~P~~~~~~~~~~~vs~-~-----~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 211 NCSSQAAQANYPGMLVWAVA-S-----SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CBCSCCEEETTTTEEEECBS-S-----CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eCCCCccccccCCEEEEEcC-C-----EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 0 001235677665 2 47778876654444331 112 666 9999999999987431
Q ss_pred c-eeeEEEeecCCCCceEEEeecCCCeEEEeeC-CCCCceeEEEecCCCeEEEEcC-CCCeEEEEEecCCCCe
Q psy17325 334 C-TRWLFWTDWGENPRIERIGMDGSNRSTIIST-KIYWPNGLTLDIATRRVYFADS-KLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 334 ~-~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~-~l~~p~glaiD~~~~~ly~~d~-~~~~I~~~~~~g~g~~ 403 (461)
. ...|+ ....+.. +|-...+++..- --..|.||++++++++||++.. ..+.|..+|+. ++..
T Consensus 285 ~~~~~~~-----~~~~~~V--iD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~-t~kv 349 (368)
T 1mda_H 285 HSRSCLA-----AAENTSS--VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA-SDQD 349 (368)
T ss_dssp CSSCTTS-----CEEEEEE--EESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESS-SCEE
T ss_pred ccCcccc-----cCCCEEE--EECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECC-CCcE
Confidence 0 00000 0011222 333333333211 1126999999988888999988 69999999993 4443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-06 Score=79.50 Aligned_cols=219 Identities=13% Similarity=0.020 Sum_probs=140.3
Q ss_pred CeEEEEeCCCCeEEEEeC-CCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDE-NGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~-~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~ 239 (461)
+++++++..+++|.+.+. +|+..-.+-......+..+++.|.. .++++. ...|...+.+|...-.+-...-..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilvs~---~~~V~~~d~~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILFSY---SKGAKMITRDGRELWNIAAPAGCE 78 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEEEC---BSEEEEECTTSCEEEEEECCTTCE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEEeC---CCCEEEECCCCCEEEEEcCCCCcc
Confidence 577888888889999998 7776655544332468899999864 466543 357888888776443332211123
Q ss_pred ceeEEeeccCCeeEEecCC-CceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE-eCC----
Q psy17325 240 PNGLTLDIATRRVYFADSK-LDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV-SGQ---- 313 (461)
Q Consensus 240 P~glavD~~~~~ly~~d~~-~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~-~~~---- 313 (461)
+.+.++.+ ++++++++.. . .+|...+.+|+....+. ...
T Consensus 79 ~~~~~~~~-dG~~lv~~~~~~----------------------------------~~v~~vd~~Gk~l~~~~~~~~~~~~ 123 (276)
T 3no2_A 79 MQTARILP-DGNALVAWCGHP----------------------------------STILEVNMKGEVLSKTEFETGIERP 123 (276)
T ss_dssp EEEEEECT-TSCEEEEEESTT----------------------------------EEEEEECTTSCEEEEEEECCSCSSG
T ss_pred ccccEECC-CCCEEEEecCCC----------------------------------CEEEEEeCCCCEEEEEeccCCCCcc
Confidence 44566654 5667777655 4 34556666776543332 111
Q ss_pred e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 314 L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 314 ~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
. |+++++++ +|.+++++.. +++|...+.+|+..-.+-. -..|.++++. .++++++++...++
T Consensus 124 ~~~~~~v~~~~-~G~~lv~~~~------------~~~v~~~d~~G~~~w~~~~--~~~~~~~~~~-~~g~~~v~~~~~~~ 187 (276)
T 3no2_A 124 HAQFRQINKNK-KGNYLVPLFA------------TSEVREIAPNGQLLNSVKL--SGTPFSSAFL-DNGDCLVACGDAHC 187 (276)
T ss_dssp GGSCSCCEECT-TSCEEEEETT------------TTEEEEECTTSCEEEEEEC--SSCCCEEEEC-TTSCEEEECBTTSE
T ss_pred cccccCceECC-CCCEEEEecC------------CCEEEEECCCCCEEEEEEC--CCCccceeEc-CCCCEEEEeCCCCe
Confidence 1 77888886 5556667666 7889999988776555442 2578898886 67889999988889
Q ss_pred EEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee-eCCEEEEEeCCC
Q psy17325 392 IDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL-ENGMLYYSTEGA 443 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~lYwtd~~~ 443 (461)
|..++.+ +|...-.+...... +..+..|.++.+ .+|.+|+++...
T Consensus 188 v~~~d~~-tG~~~w~~~~~~~~------~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 188 FVQLNLE-SNRIVRRVNANDIE------GVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEECTT-TCCEEEEEEGGGSB------SCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEeCc-CCcEEEEecCCCCC------CccccccccceEcCCCCEEEEeccC
Confidence 9999993 47775544432111 001123455554 478999999643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-07 Score=84.38 Aligned_cols=187 Identities=10% Similarity=0.043 Sum_probs=106.8
Q ss_pred eEEEEeCCCCeEEEEeCCCCcEEEEec-CCCC-CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec-c--
Q psy17325 162 HIYWLDSRLNRIEVCDENGTNRIVLAK-DNIT-QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST-K-- 236 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~-~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~-~-- 236 (461)
.++++....+.|.+.++........+. .... .|.+++++|..+ +||++. .....|...++........+.. .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR--IAYATV-NKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS--EEEEEE-TTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCC--EEEEEe-CCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 355666667777777765443332222 2211 599999999877 899998 5557899999875443322221 1
Q ss_pred --cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe
Q psy17325 237 --IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL 314 (461)
Q Consensus 237 --~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~ 314 (461)
-..|.++++++.+++||+++....... .-|+. .. +.|.+.++.+......+....
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~-----------------~~~~~--~~----~~i~v~d~~~~~~~~~~~~~~ 135 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLEL-----------------THFEV--QP----TRVALYDAETLSRRKAFEAPR 135 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECS-----------------SCEEE--CC----CEEEEEETTTTEEEEEEECCS
T ss_pred cccccccceEECCCCCEEEEEeccccccc-----------------ccccc--cC----ceEEEEECCCCcEEEEEeCCC
Confidence 126899999998889999862100000 00000 00 246667766544333333333
Q ss_pred -eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
|.+++++|.++.||+++ +.|...++........+ ..-.++..+++++.+..||++....+
T Consensus 136 ~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~ 196 (337)
T 1pby_B 136 QITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDK-PIQSWEAETYAQPDVLAVWNQHESSG 196 (337)
T ss_dssp SCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEE-CSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred CcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeee-eccccCCCceeCCCccEEeeeccCCC
Confidence 89999999988888873 24555555433322222 11122333455656666776655444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-06 Score=83.95 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=64.5
Q ss_pred CCeEEEEeCC-----CCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-------CC-CCcEEEEecC
Q psy17325 160 GGHIYWLDSR-----LNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-------GE-NPRIERIGMD 225 (461)
Q Consensus 160 ~~~ly~~d~~-----~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-------~~-~~~I~~~~~d 225 (461)
.+.+|++|.. .+.|.+++.. |+....+ ..+ ..| +|+++|..+ +||.++. +. ...|...++.
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g-~~p-~i~~spdg~--~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTA-FNG-HVQVSNDGK--KIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECC-EEE-EEEECTTSS--EEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCC-CCC-ceEECCCCC--EEEEEEecccccccCCCCCEEEEEECc
Confidence 5678888864 4588888864 4433333 333 458 999999977 9999873 11 2458888776
Q ss_pred CCCc-EEEEec-----ccccceeEEeeccCCeeEEecCC-Ccee
Q psy17325 226 GSNR-STIIST-----KIYWPNGLTLDIATRRVYFADSK-LDFI 262 (461)
Q Consensus 226 G~~~-~~i~~~-----~~~~P~glavD~~~~~ly~~d~~-~~~i 262 (461)
.... ..+-.. ....|.+|++++.+++||+++.. .+.|
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 3322 222211 12479999999999999999864 4443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-06 Score=83.09 Aligned_cols=235 Identities=11% Similarity=0.029 Sum_probs=131.4
Q ss_pred cceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCC-CcEEEEecC-----CCCCceeEEEcCCCCceEEEEeec
Q psy17325 149 DLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENG-TNRIVLAKD-----NITQPRGMMLDPSPGTRWLFWTDW 213 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G-~~~~~l~~~-----~~~~p~~ia~d~~~g~~~ly~td~ 213 (461)
..| ++++++.++.+|+++. ..+.|.++++.. +....+... .-..|.+|+++|..+ +||++..
T Consensus 51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~ 127 (361)
T 2oiz_A 51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNA 127 (361)
T ss_dssp EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEE
T ss_pred CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECC
Confidence 357 9999999999999984 245799999764 333333211 124699999999977 9999985
Q ss_pred CCCCcEEEEecCCCCcEEEEe-ccc-------cccee----EEeeccCCeeEEecCCCceeeecccceeeeecc------
Q psy17325 214 GENPRIERIGMDGSNRSTIIS-TKI-------YWPNG----LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNY------ 275 (461)
Q Consensus 214 ~~~~~I~~~~~dG~~~~~i~~-~~~-------~~P~g----lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~------ 275 (461)
.....|..++++.. +.+.. -.. ..|.+ +++...+..++|.-...+.+... ......++.
T Consensus 128 ~~~~~v~v~d~~~~--~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~-~~~~~~~~~~~~~~~ 204 (361)
T 2oiz_A 128 SPATSIGIVDVAKG--DYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ-SRSKQMFSVKDDPIF 204 (361)
T ss_dssp SSSEEEEEEETTTT--EEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE-EECCCCSCTTTSCBC
T ss_pred CCCCeEEEEECCCC--cEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee-ccccceEcCCCCceE
Confidence 43467888887743 22221 111 12322 55555555555543322221100 000000000
Q ss_pred ---ceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe----------CCe-eee---EEEeccCCeEEEeecCceeeE
Q psy17325 276 ---STIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS----------GQL-YEA---LALDLENGMLYYSTLKCTRWL 338 (461)
Q Consensus 276 ---~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~----------~~~-p~~---iavd~~~~~lY~t~~~~~~~l 338 (461)
..-.+.++|.... +.|++.++.+....++.. ... |.| +++++.+++||++......
T Consensus 205 ~~~~~~g~~~~~~~~~-----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~-- 277 (361)
T 2oiz_A 205 IAPALDKDKAHFVSYY-----GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK-- 277 (361)
T ss_dssp SCCEECSSEEEEEBTT-----SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC--
T ss_pred EEecccCCEEEEEeCC-----CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC--
Confidence 0001244554432 357778776554443321 011 444 9999999999987541000
Q ss_pred EEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCC
Q psy17325 339 FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG 401 (461)
Q Consensus 339 ~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g 401 (461)
.++.......|...++.......-+...- |.+|++++++++||.+.. +.|..+|.. +|
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~--~~v~v~D~~-t~ 335 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG--GNVNVYDIS-QP 335 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS--SCEEEEECS-SS
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC--CeEEEEECC-CC
Confidence 00000012356666654333222222222 999999999999999985 899999983 45
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.2e-09 Score=90.91 Aligned_cols=57 Identities=35% Similarity=0.849 Sum_probs=39.3
Q ss_pred ceEeCCCCCeecCCCCceecCcceec-CCcccC-ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 51 ALCTCPPGEILSNDSVTCQDMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 51 ~~C~C~~G~~l~~~~~~C~d~~eC~~-~~~C~~-~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
|.|.|++||.+ .++..|++++||.. +..|.+ .|+|+.++|.|.|++||.+..++++|
T Consensus 88 ~~C~C~~Gy~~-~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C 146 (147)
T 2w86_A 88 VDPICGKGYSR-IKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146 (147)
T ss_dssp CCTTTCTTEEE-EETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCB
T ss_pred CcccCCCcccc-CCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCee
Confidence 45566666654 23667777888863 445764 78888888888888888777777766
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-06 Score=86.26 Aligned_cols=221 Identities=12% Similarity=0.007 Sum_probs=139.3
Q ss_pred eeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCCcE-EE
Q psy17325 155 AYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSNRS-TI 232 (461)
Q Consensus 155 avd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~~~-~i 232 (461)
..|+ .+.+|+++...+.|.++|.+......-+..+ ..|.++++.|..+ +||++. ....|..+++. .+... .-
T Consensus 162 ~~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr--~lyv~~--~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 162 DWDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR--YLFVIG--RDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp CCCG-GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC--EEEEEE--TTSEEEEEETTSSSCCEEEE
T ss_pred ccCC-CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC--EEEEEc--CCCeEEEEECCCCCCcEeEE
Confidence 3554 6789999999999999998765443333323 3689999999977 999987 24589999984 22221 11
Q ss_pred EecccccceeEEee----ccCCeeEEecCCCceeeecccce---eeeeccc-------------e---ee-----eEEEE
Q psy17325 233 ISTKIYWPNGLTLD----IATRRVYFADSKLDFIDCKSLEI---KTNVNYS-------------T---IF-----RKLYW 284 (461)
Q Consensus 233 ~~~~~~~P~glavD----~~~~~ly~~d~~~~~i~~~~~~~---~~~v~~~-------------~---~~-----~~~yw 284 (461)
+.. -..|.+|+++ +.+++||+++...+.+..++... .+.|... . ++ ..++.
T Consensus 236 i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 236 IKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp EEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred Eec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 222 2369999999 68899999998888877765533 2222110 0 10 12222
Q ss_pred EecCCCCcceeeeEEeCCCCceEEE--EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE
Q psy17325 285 IDEGGNGVPLKIGKANMDGSNASIL--VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST 361 (461)
Q Consensus 285 ~d~~~~~~~~~I~~~~~~g~~~~~l--~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~ 361 (461)
.-... ++|..++........+ +.... |+++.++|.++++|++... +++|...+..-.....
T Consensus 315 ~~~~~----g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~------------sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 315 NVKET----GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA------------RNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EETTT----TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG------------GTEEEEEETTTTEEEE
T ss_pred EecCC----CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC------------CCeEEEEECCCCcEEE
Confidence 22222 3566666543321111 11222 8899999999999998876 6677777765333322
Q ss_pred EeeC--CCCCc-eeEEE-ecCCCeEEEEc-CCCCeEEEEEec
Q psy17325 362 IIST--KIYWP-NGLTL-DIATRRVYFAD-SKLDFIDFCNYD 398 (461)
Q Consensus 362 l~~~--~l~~p-~glai-D~~~~~ly~~d-~~~~~I~~~~~~ 398 (461)
.+.. ...+| .|..+ ++..+.+|++. .+.+.|..++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 3322 33445 47664 65668888764 456899999985
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-07 Score=87.50 Aligned_cols=247 Identities=12% Similarity=0.091 Sum_probs=147.1
Q ss_pred EEcCccceeeeeeeecCCeEEEEeC---------CCCeEEEEeCCCCcE-EEE-ecCC-----CCCceeEEEcCCCCceE
Q psy17325 144 VVSGLDLVEGLAYDWIGGHIYWLDS---------RLNRIEVCDENGTNR-IVL-AKDN-----ITQPRGMMLDPSPGTRW 207 (461)
Q Consensus 144 ~~~g~~~p~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~~~-~~l-~~~~-----~~~p~~ia~d~~~g~~~ 207 (461)
+..|. .|. +++++.++.+|+++. ..+.|.++|...... ..+ +..+ ...|++++++|..+ +
T Consensus 75 I~vG~-~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk--~ 150 (386)
T 3sjl_D 75 IDGGF-LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--T 150 (386)
T ss_dssp EEECS-SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--E
T ss_pred EECCC-CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC--E
Confidence 34454 365 999999999999984 356799999776543 333 2210 23799999999977 9
Q ss_pred EEEeecCCCCcEEEEecCCCCc-EEEEecc--ccccee----EEeeccCCeeEEecCCCceeeecccceeeeecc--cee
Q psy17325 208 LFWTDWGENPRIERIGMDGSNR-STIISTK--IYWPNG----LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNY--STI 278 (461)
Q Consensus 208 ly~td~~~~~~I~~~~~dG~~~-~~i~~~~--~~~P~g----lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~--~~~ 278 (461)
||++.......|..+++..... .+|-..+ ...|.| +++-..+..+|++-...+.+... ....++. ..+
T Consensus 151 lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~---~~~~~~~~~~~~ 227 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT---HTEVFHPEDEFL 227 (386)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE---ECCCCSCTTSCB
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEe---ecceeccccccc
Confidence 9999843346888888875432 2221111 124555 36666555555554333443110 0001111 111
Q ss_pred ---------eeEEEEEecCCCCcceeeeEEeCCCCceEEEEe----------CCe-eee---EEEeccCCeEEEeecCce
Q psy17325 279 ---------FRKLYWIDEGGNGVPLKIGKANMDGSNASILVS----------GQL-YEA---LALDLENGMLYYSTLKCT 335 (461)
Q Consensus 279 ---------~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~----------~~~-p~~---iavd~~~~~lY~t~~~~~ 335 (461)
..++||...+ ++|+++++.+...+++.. .+. |.+ +++++.+++||++... .
T Consensus 228 ~~~~~~~~~dG~~~~vs~~-----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~-~ 301 (386)
T 3sjl_D 228 INHPAYSQKAGRLVWPTYT-----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ-R 301 (386)
T ss_dssp CSCCEEETTTTEEEEEBTT-----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE-C
T ss_pred cccceeEcCCCcEEEEeCC-----CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc-c
Confidence 2256665543 369999998876554321 122 544 8999999999998542 0
Q ss_pred eeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC-eEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 336 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR-RVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 336 ~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~-~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
-.|++....++|..+++.-..+..-+ .--..|.+|+++++++ +||.++...+.|..+|.. ++.....+
T Consensus 302 --~~~~hk~~~~~V~viD~~t~kv~~~i-~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~-t~k~~~~i 370 (386)
T 3sjl_D 302 --DEWRHKTASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE-SGEELRSV 370 (386)
T ss_dssp --CTTCTTSCEEEEEEEETTTCCEEEEE-EEEEEECEEEECSSSSCEEEEEETTTTEEEEEETT-TCCEEEEE
T ss_pred --cccccCCCCCEEEEEECCCCeEEEEE-ECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECC-CCcEEEEe
Confidence 01222222345766666433322211 1113688999998876 799999999999999993 66654444
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.3e-09 Score=105.93 Aligned_cols=97 Identities=30% Similarity=0.651 Sum_probs=76.3
Q ss_pred CCCCCCC-CCCCC-CCCcccCCCCCCCC-----CceeCCCCceEe-CCCCCeecC-----------CCCceecCcceec-
Q psy17325 17 DCPNGAD-EGPGC-DLAECKHKFGLCSN-----TCHPTPLGALCT-CPPGEILSN-----------DSVTCQDMNECEQ- 76 (461)
Q Consensus 17 dC~dg~d-e~~~C-~~~~C~~~~~~C~~-----~C~~~~~~~~C~-C~~G~~l~~-----------~~~~C~d~~eC~~- 76 (461)
.|+.|+- .+..| +++||...+..|.+ .|.++.++|.|. |++||.... ++..|++++||..
T Consensus 29 ~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~ 108 (634)
T 1yo8_A 29 FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK 108 (634)
T ss_dssp CCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTT
T ss_pred cCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccccccccccccCCCcccccccccCC
Confidence 4777763 23678 58999888877865 799999999998 999997532 4567999999974
Q ss_pred CCccc--Cceeecc----CCccccCCCCeeeeCCCCcee---eccccc
Q psy17325 77 PGYCS--QMCTNTK----GSYICSCNEGYVLEYDNHTCK---AINHSA 115 (461)
Q Consensus 77 ~~~C~--~~C~~~~----g~~~C~C~~g~~l~~~~~~C~---~~~~~~ 115 (461)
...|. ..|.++. ++|.|.|++||.. +++.|. ++++|.
T Consensus 109 ~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~G--dG~~Ce~d~DiDeC~ 154 (634)
T 1yo8_A 109 THNCHKHAECIYLGHFSDPMYKCECQTGYAG--DGLICGEDSDLDGWP 154 (634)
T ss_dssp CCCCCTTEEEEECCTTCSSSEEEEECTTEEE--SSSSEEECTTSSSSC
T ss_pred CcccccCccccccccccccceeeeccCCccc--cCcccccccCccccc
Confidence 45796 4899998 9999999999973 567886 566654
|
| >1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A | Back alignment and structure |
|---|
Probab=98.74 E-value=8.8e-09 Score=83.57 Aligned_cols=79 Identities=24% Similarity=0.629 Sum_probs=61.8
Q ss_pred CCCcccCCCCCCCCCceeC-CCCceEeCCCCCeecCCCCceecCccee---cCCcccCceeeccCCccccCCCCeeeeCC
Q psy17325 29 DLAECKHKFGLCSNTCHPT-PLGALCTCPPGEILSNDSVTCQDMNECE---QPGYCSQMCTNTKGSYICSCNEGYVLEYD 104 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~-~~~~~C~C~~G~~l~~~~~~C~d~~eC~---~~~~C~~~C~~~~g~~~C~C~~g~~l~~~ 104 (461)
++++|.. .+|.+.|+++ +++|.|.|++||.+... ++++|. ..+.|.+.|.+ .++|.|.|++||.+..
T Consensus 3 dideC~~--~pC~~~C~~~~~g~y~C~C~~Gy~g~~~-----~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~- 73 (118)
T 1dx5_I 3 PVDPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPH-----EPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD- 73 (118)
T ss_dssp CCCGGGG--CCCSSEEEECSSSCEEEECCTTEEEETT-----EEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-
T ss_pred ccccCCC--CCCCCCCCCCCCCCEEeECCCCccccCC-----CCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-
Confidence 4678863 4687899999 89999999999986432 334443 25678888988 5899999999999876
Q ss_pred CCceeeccccce
Q psy17325 105 NHTCKAINHSAA 116 (461)
Q Consensus 105 ~~~C~~~~~~~~ 116 (461)
++.|.+++++..
T Consensus 74 g~~C~dideC~~ 85 (118)
T 1dx5_I 74 GFICTDIDECEN 85 (118)
T ss_dssp TTEEEECCHHHH
T ss_pred CCccccccccCC
Confidence 789998888753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-05 Score=76.44 Aligned_cols=224 Identities=10% Similarity=0.019 Sum_probs=127.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CC-----CCCceeEEEcCCCCceEEEEeecC---------
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DN-----ITQPRGMMLDPSPGTRWLFWTDWG--------- 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~-----~~~p~~ia~d~~~g~~~ly~td~~--------- 214 (461)
.|.++++++.++.+|++....+.|.+.+++.......+. .. ...|.+++++|... +||++...
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYV 121 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC--EEEEEcccccccccccc
Confidence 588899998888899999989999999987654433332 21 12389999999877 89988722
Q ss_pred -CCCcEEEEecCCCC---cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccce---eeeeccce----------
Q psy17325 215 -ENPRIERIGMDGSN---RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI---KTNVNYST---------- 277 (461)
Q Consensus 215 -~~~~I~~~~~dG~~---~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~---~~~v~~~~---------- 277 (461)
....|...++.... ...... ....+.++++++.++ ||+++.. |...+... ...+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~~---i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGPD---IYKMDVKTGKYTVALPLRNWNRKGYSAPD 196 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESSS---EEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred cCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccCc---EEEEeCCCCceeccccccccCCccccCcc
Confidence 03588888876421 111222 223578888998666 8886433 44443321 11111110
Q ss_pred ------------eeeE---EEEEecCCC-----CcceeeeEEeCCCCceEEEEe--CC-eeeeEEEec-cCCeEEEeecC
Q psy17325 278 ------------IFRK---LYWIDEGGN-----GVPLKIGKANMDGSNASILVS--GQ-LYEALALDL-ENGMLYYSTLK 333 (461)
Q Consensus 278 ------------~~~~---~yw~d~~~~-----~~~~~I~~~~~~g~~~~~l~~--~~-~p~~iavd~-~~~~lY~t~~~ 333 (461)
.+.. +-++..+.. .....+...+......+.+-. .. .|.+++++| .++.||++ .
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~- 274 (349)
T 1jmx_B 197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L- 274 (349)
T ss_dssp CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E-
T ss_pred ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-c-
Confidence 0000 111100000 000001112222222222111 11 288899999 88888876 2
Q ss_pred ceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 334 CTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 334 ~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++|...++........+ ..-..|.++++++.+++||++. ..+.|..+++
T Consensus 275 -------------~~v~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~-~~~~v~v~d~ 323 (349)
T 1jmx_B 275 -------------NRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGG-TFNDLAVFNP 323 (349)
T ss_dssp -------------SEEEEEETTTTEEEEEE-ECSSCCCEEEECSSSSCEEEES-BSSEEEEEET
T ss_pred -------------CeEEEEECccCeEEEEE-cCCCCccceEECCCCCEEEEec-CCCeEEEEec
Confidence 25666666543333333 2234689999998888999974 4589999998
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-06 Score=78.43 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=110.9
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~ 272 (461)
-.||.++. + .||.+. +...+|.++++. |+....+ ...-....||+++ +++||.+....+
T Consensus 57 tqGL~~~~--~--~Ly~st-G~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~------------ 116 (268)
T 3nok_A 57 TQGLVFHQ--G--HFFEST-GHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEG------------ 116 (268)
T ss_dssp EEEEEEET--T--EEEEEE-TTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSC------------
T ss_pred cceEEEEC--C--EEEEEc-CCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCC------------
Confidence 37999983 5 999999 776779998887 4444445 3322234567776 789999987764
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCC-ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEE
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~ 351 (461)
.+.+.+++.. ....+-.. +.|.++.+.++.||.|+ + .+.+++.|-.....+.+
T Consensus 117 ----------------------~v~V~D~~Tl~~~~ti~~~--~eGwGLt~Dg~~L~vSd-G-s~~l~~iDp~T~~v~~~ 170 (268)
T 3nok_A 117 ----------------------LLFTWSGMPPQRERTTRYS--GEGWGLCYWNGKLVRSD-G-GTMLTFHEPDGFALVGA 170 (268)
T ss_dssp ----------------------EEEEEETTTTEEEEEEECS--SCCCCEEEETTEEEEEC-S-SSEEEEECTTTCCEEEE
T ss_pred ----------------------EEEEEECCcCcEEEEEeCC--CceeEEecCCCEEEEEC-C-CCEEEEEcCCCCeEEEE
Confidence 4555554422 22222222 44444445588999998 3 23444444332222222
Q ss_pred EeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccc-cceee-ccC-CCCCcceEE
Q psy17325 352 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLM-VEFTN-DLM-GDNGVPALA 428 (461)
Q Consensus 352 ~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~-~~~~~-~~~-~~~~~~~~~ 428 (461)
...... ...+..++.|.. .+++||...+..+.|.++|. .+|.....+.-.. ..... ... ....+-++|
T Consensus 171 I~V~~~------g~~v~~lNeLe~--~dG~lyanvw~s~~I~vIDp-~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA 241 (268)
T 3nok_A 171 VQVKLR------GQPVELINELEC--ANGVIYANIWHSSDVLEIDP-ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIA 241 (268)
T ss_dssp EECEET------TEECCCEEEEEE--ETTEEEEEETTCSEEEEECT-TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEE
T ss_pred EEeCCC------CcccccccccEE--eCCEEEEEECCCCeEEEEeC-CCCcEEEEEECCCCcccccccccCcCCceEEEE
Confidence 211110 012446677777 58899999999999999999 4777655543321 00000 000 001122444
Q ss_pred EeeeCCEEEEEeC
Q psy17325 429 LDLENGMLYYSTE 441 (461)
Q Consensus 429 l~~~~~~lYwtd~ 441 (461)
++..+++||+|.-
T Consensus 242 ~dp~~~rlfVTGK 254 (268)
T 3nok_A 242 VEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCCEEEEET
T ss_pred EcCCCCEEEEeCC
Confidence 4445789999863
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=89.70 Aligned_cols=259 Identities=10% Similarity=0.009 Sum_probs=154.8
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEc--CCCCceEEEEeecC----------------CCCcE
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLD--PSPGTRWLFWTDWG----------------ENPRI 219 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d--~~~g~~~ly~td~~----------------~~~~I 219 (461)
.++.+|++|..+++|.|++++......++. ..-..|.|+++. |..+ ++|.+... ....+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~--~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN--YVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS--EEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc--EEEEecccccccCCCCcccccccccCceE
Confidence 478999999999999999999877555443 223569999984 8878 99999410 11355
Q ss_pred EEEecCCCCcEEEEeccc-ccceeEEeeccCCeeEEecCCCceeeec---ccceeeeeccc---------eeeeEEEEEe
Q psy17325 220 ERIGMDGSNRSTIISTKI-YWPNGLTLDIATRRVYFADSKLDFIDCK---SLEIKTNVNYS---------TIFRKLYWID 286 (461)
Q Consensus 220 ~~~~~dG~~~~~i~~~~~-~~P~glavD~~~~~ly~~d~~~~~i~~~---~~~~~~~v~~~---------~~~~~~yw~d 286 (461)
..++.+. .+++..-.+ ..|.++++++.++++|++...++..... +...+..|... ...+..|.
T Consensus 178 tvID~~t--~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-- 253 (595)
T 1fwx_A 178 TAVDADK--WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-- 253 (595)
T ss_dssp EEEETTT--TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE--
T ss_pred EEEECCC--CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE--
Confidence 5666553 222222111 3799999999999999999776432211 11111111110 00112221
Q ss_pred cCCCCcceeeeEEeCCC---Cc-eEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC----
Q psy17325 287 EGGNGVPLKIGKANMDG---SN-ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN---- 358 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g---~~-~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~---- 358 (461)
+.|.+.+... +. ...+-....|+|+++.|.++++|+++.. .++|...+.+-..
T Consensus 254 -------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------------s~~VsVid~~~~~~~~~ 314 (595)
T 1fwx_A 254 -------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------------SPTVTVLDVTRFDAVFY 314 (595)
T ss_dssp -------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------------SSBEEEEEGGGHHHHHH
T ss_pred -------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------------CCeEEEEECcccccccc
Confidence 2366666553 22 2223222229999999999999999888 6677776665211
Q ss_pred ------eEEEee-CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecC-----CCCe-EEEEEcccccee-eccCCCCCc
Q psy17325 359 ------RSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDG-----TGRQ-QVILIDLMVEFT-NDLMGDNGV 424 (461)
Q Consensus 359 ------~~~l~~-~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g-----~g~~-~~~~~~~~~~~~-~~~~~~~~~ 424 (461)
..++.. .--..|.++++|+.+ ++|.+..-.+.|..++++. .|.. ..++.....+.. -... ..
T Consensus 315 ~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~---~~ 390 (595)
T 1fwx_A 315 ENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK---TV 390 (595)
T ss_dssp SCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE---ET
T ss_pred cccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce---ec
Confidence 112221 223469999999766 9999999999999999842 0001 112211111110 0000 00
Q ss_pred ceEEEeeeCCEEEEEeCCC-cee
Q psy17325 425 PALALDLENGMLYYSTEGA-EFL 446 (461)
Q Consensus 425 ~~~~l~~~~~~lYwtd~~~-~~i 446 (461)
.+..++.++.+||.++..+ .++
T Consensus 391 ~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSS
T ss_pred cceEeCCCCCEEEEcCCCCcccc
Confidence 1234567889999999888 544
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=98.72 E-value=4.5e-09 Score=72.52 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=40.1
Q ss_pred CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCccee
Q psy17325 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
+||...+..|.+.|.+++++|.|.|++||.|..++++|.+++||.
T Consensus 2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~ 46 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46 (55)
T ss_dssp CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence 578777788999999999999999999999988999999999883
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-09 Score=74.94 Aligned_cols=48 Identities=31% Similarity=0.652 Sum_probs=42.5
Q ss_pred eecCccee-cCCcccCceeeccC-CccccCCCCeeeeCCCCceeeccccc
Q psy17325 68 CQDMNECE-QPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 68 C~d~~eC~-~~~~C~~~C~~~~g-~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
..|++||. .+++|+|.|.|+++ +|.|.|++||.|..++++|.+++++.
T Consensus 2 ~~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~ 51 (69)
T 1kli_L 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 51 (69)
T ss_dssp CSCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred CcccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccccc
Confidence 45789997 56789999999999 89999999999999999999988754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.8e-06 Score=77.18 Aligned_cols=192 Identities=15% Similarity=0.099 Sum_probs=110.1
Q ss_pred eeEEEcCCCCceEEEEeecCCC--CcEEEEecCCCC-cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceee
Q psy17325 195 RGMMLDPSPGTRWLFWTDWGEN--PRIERIGMDGSN-RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271 (461)
Q Consensus 195 ~~ia~d~~~g~~~ly~td~~~~--~~I~~~~~dG~~-~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~ 271 (461)
.||+++ .+ .||.+. +.. ..|.++++.... ...+....-....||+++ +++||.+....+
T Consensus 46 qGL~~~--~~--~Lyest-G~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~----------- 107 (262)
T 3nol_A 46 EGFFYR--NG--YFYEST-GLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNG----------- 107 (262)
T ss_dssp EEEEEE--TT--EEEEEE-EETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS-----------
T ss_pred ceEEEE--CC--EEEEEC-CCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCC-----------
Confidence 899998 46 899997 443 589998887433 333322222223567776 789999987764
Q ss_pred eeccceeeeEEEEEecCCCCcceeeeEEeCCC-CceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceE
Q psy17325 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIE 350 (461)
Q Consensus 272 ~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~ 350 (461)
.+.+.+++. +....+-.. +.|.++.+.++.||.|+.. +.+++.|-.....+.
T Consensus 108 -----------------------~v~v~D~~t~~~~~ti~~~--~eG~glt~dg~~L~~SdGs--~~i~~iDp~T~~v~~ 160 (262)
T 3nol_A 108 -----------------------LGFVWNIRNLRQVRSFNYD--GEGWGLTHNDQYLIMSDGT--PVLRFLDPESLTPVR 160 (262)
T ss_dssp -----------------------EEEEEETTTCCEEEEEECS--SCCCCEEECSSCEEECCSS--SEEEEECTTTCSEEE
T ss_pred -----------------------EEEEEECccCcEEEEEECC--CCceEEecCCCEEEEECCC--CeEEEEcCCCCeEEE
Confidence 456666543 323333222 3444455558899998732 344444433222222
Q ss_pred EEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeecc--C--CCCCcce
Q psy17325 351 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDL--M--GDNGVPA 426 (461)
Q Consensus 351 ~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~--~--~~~~~~~ 426 (461)
+...... ...+..++.|.. .+++||+..+..+.|.++|. .+|.....+... ++.... . ....+.+
T Consensus 161 ~I~V~~~------g~~~~~lNELe~--~~G~lyan~w~~~~I~vIDp-~tG~V~~~Id~~--~L~~~~~~~~~~~~vlNG 229 (262)
T 3nol_A 161 TITVTAH------GEELPELNELEW--VDGEIFANVWQTNKIVRIDP-ETGKVTGIIDLN--GILAEAGPLPSPIDVLNG 229 (262)
T ss_dssp EEECEET------TEECCCEEEEEE--ETTEEEEEETTSSEEEEECT-TTCBEEEEEECT--TGGGGSCSCCSSCCCEEE
T ss_pred EEEeccC------CccccccceeEE--ECCEEEEEEccCCeEEEEEC-CCCcEEEEEECC--cCccccccccCcCCceEE
Confidence 2111100 012455677777 57899999999999999999 477776555332 111000 0 0112224
Q ss_pred EEEeeeCCEEEEEeCC
Q psy17325 427 LALDLENGMLYYSTEG 442 (461)
Q Consensus 427 ~~l~~~~~~lYwtd~~ 442 (461)
+|++..+++||+|--.
T Consensus 230 IA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 230 IAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEcCCCCEEEEECCC
Confidence 4555557899999744
|
| >1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-09 Score=74.81 Aligned_cols=47 Identities=28% Similarity=0.488 Sum_probs=43.2
Q ss_pred CCCcccCCCCCCCCCceeCCC-CceEeCCCCCeecCCCCceecCccee
Q psy17325 29 DLAECKHKFGLCSNTCHPTPL-GALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
++++|..+++.|++.|.++++ +|.|.|++||.|..++++|.+++||.
T Consensus 4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~ 51 (69)
T 1kli_L 4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 51 (69)
T ss_dssp CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccccc
Confidence 467898888999999999998 79999999999999999999999984
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.68 E-value=9.3e-07 Score=88.99 Aligned_cols=177 Identities=13% Similarity=0.104 Sum_probs=104.8
Q ss_pred EEEecCCCCCceeEEEcCCC-CceEEEEeecCCCCcEEEEecCCCCc-EEEEe------cc-----cccceeEEeecc--
Q psy17325 184 IVLAKDNITQPRGMMLDPSP-GTRWLFWTDWGENPRIERIGMDGSNR-STIIS------TK-----IYWPNGLTLDIA-- 248 (461)
Q Consensus 184 ~~l~~~~~~~p~~ia~d~~~-g~~~ly~td~~~~~~I~~~~~dG~~~-~~i~~------~~-----~~~P~glavD~~-- 248 (461)
..++..++.+|++|++.|.. + .||+++. ..+|++++.+|... +.+.. .+ ...+.|||+++.
T Consensus 6 v~~va~gL~~P~~~a~~pdG~~--rl~V~er--~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 6 IQEVVSGLRQPVGALHSGDGSQ--RLFILEK--EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp EEEEEEEESSEEEEECCSSSSC--CEEEEET--TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred EEEeccCCCCceEEEECCCCCe--EEEEEeC--CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence 34445567899999999974 3 5999993 46898888776531 11111 11 345788999985
Q ss_pred -CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC--------CceEEEEeCCe-----
Q psy17325 249 -TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG--------SNASILVSGQL----- 314 (461)
Q Consensus 249 -~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g--------~~~~~l~~~~~----- 314 (461)
++.||++.+....-. . .+......+|.|..++. +..++|+....
T Consensus 82 ~n~~lYv~yt~~~~~~---------------------~-~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H 139 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERW---------------------A-IGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH 139 (463)
T ss_dssp HHCEEEEEEEECCCSS---------------------C-SSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS
T ss_pred CCCEEEEEEeCCCCCc---------------------c-cCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc
Confidence 678887653210000 0 00000002466666542 12345544211
Q ss_pred -eeeEEEeccCCeEEEeecCceeeE--E--Eeec-CCCCceEEEeecCCC-------------------eEEEeeCCCCC
Q psy17325 315 -YEALALDLENGMLYYSTLKCTRWL--F--WTDW-GENPRIERIGMDGSN-------------------RSTIISTKIYW 369 (461)
Q Consensus 315 -p~~iavd~~~~~lY~t~~~~~~~l--~--~~d~-~~~~~I~~~~~dG~~-------------------~~~l~~~~l~~ 369 (461)
...|+++| .|+||++.-.....- . -.+. ...++|.|++.||+. +..|.+..+.+
T Consensus 140 ~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN 218 (463)
T 2wg3_C 140 LGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD 218 (463)
T ss_dssp CEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred cCCcEeECC-CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence 67899998 569999854310000 0 0000 124789999999951 22345589999
Q ss_pred ceeEEEecCCC------eEEEEcC
Q psy17325 370 PNGLTLDIATR------RVYFADS 387 (461)
Q Consensus 370 p~glaiD~~~~------~ly~~d~ 387 (461)
|.||++|+.++ +||.+|.
T Consensus 219 p~gla~dp~tg~~~G~l~~~~~D~ 242 (463)
T 2wg3_C 219 PGRCAVDRHPTDININLTILCSDS 242 (463)
T ss_dssp CCBEEEESSCSSTTCSEEEEEECC
T ss_pred cceEEECCCCCCcccceEEEeccc
Confidence 99999998754 6787885
|
| >1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-08 Score=102.41 Aligned_cols=84 Identities=26% Similarity=0.622 Sum_probs=64.8
Q ss_pred CCcccCCCCCCCCCceeCCCC-ceE-eCCCCCeecCCCCceecCcceec-CCcccC-----ceeeccCCcccc-CCCCee
Q psy17325 30 LAECKHKFGLCSNTCHPTPLG-ALC-TCPPGEILSNDSVTCQDMNECEQ-PGYCSQ-----MCTNTKGSYICS-CNEGYV 100 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~-~~C-~C~~G~~l~~~~~~C~d~~eC~~-~~~C~~-----~C~~~~g~~~C~-C~~g~~ 100 (461)
+++|..+++.-...|.+++++ |.| .|++||. .++..|++++||.. ++.|.+ .|.++.++|+|. |++||.
T Consensus 3 IDeC~~nPC~~gg~C~n~~~Gsy~C~~C~~Gyt--Gdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~ 80 (634)
T 1yo8_A 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYR 80 (634)
T ss_dssp -CGGGGCCSCTTCCEEECTTSCEEECCCCTTBC--SCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEE
T ss_pred ccccCCCCCCCCCEEecCCCCCeECCcCCCccC--CCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcc
Confidence 567865543333579999865 999 9999996 35689999999973 345865 799999999998 999998
Q ss_pred eeC-----------CCCceeeccccc
Q psy17325 101 LEY-----------DNHTCKAINHSA 115 (461)
Q Consensus 101 l~~-----------~~~~C~~~~~~~ 115 (461)
... +++.|.++++|.
T Consensus 81 G~~c~g~g~~~~~~dg~~C~dideC~ 106 (634)
T 1yo8_A 81 GNQPVGVGLEAAKTEKQVCEPENPCK 106 (634)
T ss_dssp ECCCEESSSHHHHSCCCCEEECCTTT
T ss_pred cCccccccccccccCCCccccccccc
Confidence 543 456788888775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.5e-06 Score=73.84 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=108.7
Q ss_pred ceeEEEcCCCCceEEEEeecCCC--CcEEEEecCCCCc-EEEEecccccceeEEeeccCCeeEEecCCCceeeeccccee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGEN--PRIERIGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~--~~I~~~~~dG~~~-~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
-.||+++. + .||.+. +.. ..|.++++..... ..+....-....||+++ +++||.+....+
T Consensus 23 tqGL~~~~--~--~Lyest-G~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~---------- 85 (243)
T 3mbr_X 23 TEGLFYLR--G--HLYEST-GETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH---------- 85 (243)
T ss_dssp EEEEEEET--T--EEEEEE-CCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS----------
T ss_pred cccEEEEC--C--EEEEEC-CCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC----------
Confidence 56999986 6 899997 543 6899999974433 22322222233566665 799999987764
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
.+.+.+.+.- ....+-.. +.|.++.+.++.||.|+.. +.|++.|-.....+
T Consensus 86 ------------------------~v~v~D~~tl~~~~ti~~~--~~Gwglt~dg~~L~vSdgs--~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 86 ------------------------EGFVYDLATLTPRARFRYP--GEGWALTSDDSHLYMSDGT--AVIRKLDPDTLQQV 137 (243)
T ss_dssp ------------------------EEEEEETTTTEEEEEEECS--SCCCEEEECSSCEEEECSS--SEEEEECTTTCCEE
T ss_pred ------------------------EEEEEECCcCcEEEEEeCC--CCceEEeeCCCEEEEECCC--CeEEEEeCCCCeEE
Confidence 4555555432 22222222 3445555668899998842 33344333222222
Q ss_pred EEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccC---CCCCcce
Q psy17325 350 ERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLM---GDNGVPA 426 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~ 426 (461)
.+...... ...+..++.|.. .+++||...+..+.|.++|+ .+|.....+.-. ++..... .+...-+
T Consensus 138 ~~I~V~~~------g~~~~~lNeLe~--~~G~lyanvw~s~~I~vIDp-~tG~V~~~idl~--~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 138 GSIKVTAG------GRPLDNLNELEW--VNGELLANVWLTSRIARIDP-ASGKVVAWIDLQ--ALVPDADALTDSTNDVL 206 (243)
T ss_dssp EEEECEET------TEECCCEEEEEE--ETTEEEEEETTTTEEEEECT-TTCBEEEEEECG--GGSTTTTSCCCTTSSCE
T ss_pred EEEEEccC------CcccccceeeEE--eCCEEEEEECCCCeEEEEEC-CCCCEEEEEECC--cCccccccccCCcCCce
Confidence 11111000 012345667776 68999999999999999999 377765544322 1110000 0111123
Q ss_pred EEEee--eCCEEEEEeC
Q psy17325 427 LALDL--ENGMLYYSTE 441 (461)
Q Consensus 427 ~~l~~--~~~~lYwtd~ 441 (461)
-+||+ .+++||+|--
T Consensus 207 NGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EEEEEcCCCCEEEEECC
Confidence 45554 5789999963
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-05 Score=79.88 Aligned_cols=248 Identities=9% Similarity=0.019 Sum_probs=133.9
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCC-----cEEEEe------cCCCCCceeEEEcCCCCceEEEEeecCCC-----CcEEEE
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGT-----NRIVLA------KDNITQPRGMMLDPSPGTRWLFWTDWGEN-----PRIERI 222 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~-----~~~~l~------~~~~~~p~~ia~d~~~g~~~ly~td~~~~-----~~I~~~ 222 (461)
..+.||+.....++|.++|.... ...++- ..+...|+++.+-|. | ||++..+.. ..|..+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G---i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A---IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C---EEEEEEEETTSCSCCEEEEE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e---EEEEcCCCcCCCCCCeEEEE
Confidence 47789999999999999997432 122221 123347999999876 3 888875431 466666
Q ss_pred ecCCCCcEEEEeccccccee----EEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 223 GMDGSNRSTIISTKIYWPNG----LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~g----lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
+........-... -..|.+ +.+.+..+.+|.++...-..... | .+...+ .+.. .++|.+
T Consensus 170 D~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~-g-----~~~~~~------~~~~----~d~V~v 232 (462)
T 2ece_A 170 DHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED-G-----LKLEHL------KDRY----GNRIHF 232 (462)
T ss_dssp CTTTCCEEEECCS-BCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT-C-----CCTTTH------HHHS----CCEEEE
T ss_pred ECCCCeEEEEEcc-CCCCccccceEEECCCCCEEEEccCcCcccccc-c-----cchhhh------hhcc----CCEEEE
Confidence 6653332211111 113333 44455667777776320000000 0 000000 0000 045777
Q ss_pred EeCCCCce-EEEEeC-C-e-eeeEEE--eccCCeEEEeec-----CceeeEEEeecCCCCceEEEeecCCC---eEEE-e
Q psy17325 299 ANMDGSNA-SILVSG-Q-L-YEALAL--DLENGMLYYSTL-----KCTRWLFWTDWGENPRIERIGMDGSN---RSTI-I 363 (461)
Q Consensus 299 ~~~~g~~~-~~l~~~-~-~-p~~iav--d~~~~~lY~t~~-----~~~~~l~~~d~~~~~~I~~~~~dG~~---~~~l-~ 363 (461)
.+++.... .++-.. . . |+.|++ +|.+..+|++.. . ++.|.....++.. .+++ +
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~L------------ss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDL------------SSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTC------------CEEEEEEEEETTEEEEEEEEEE
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCC------------CceEEEEEecCCceeEEEEEeC
Confidence 77765332 222221 1 2 888877 999999999876 4 3333333332211 0111 0
Q ss_pred eC-----C-----------CCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccc-e----ee--ccCC
Q psy17325 364 ST-----K-----------IYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVE-F----TN--DLMG 420 (461)
Q Consensus 364 ~~-----~-----------l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~-~----~~--~~~~ 420 (461)
.. . -..|.+|.|.+++++||+++++.+.|..++.+..+.. +++.....+ . .. ....
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~-~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP-VLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC-EEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-EEEEEEEeCCeeccccccccccC
Confidence 00 1 2469999999999999999999999999998422322 222111111 0 00 0001
Q ss_pred CCCcceEEEeeeCCEEEEEe
Q psy17325 421 DNGVPALALDLENGMLYYST 440 (461)
Q Consensus 421 ~~~~~~~~l~~~~~~lYwtd 440 (461)
.+.+..++|+.++.+||+|+
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 12355788888899999999
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-05 Score=77.47 Aligned_cols=208 Identities=10% Similarity=0.030 Sum_probs=118.5
Q ss_pred cceeeeeeeecCCeEEEEeCC-CCeEEEEeCCCCcEEEE-ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSR-LNRIEVCDENGTNRIVL-AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~-~~~I~~~~~~G~~~~~l-~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
..|.++++++.++.||+++.. .+.|.+++ ........ + .-|..+.+.+..+ ..|++.+. ..++..+++.|
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i----~~~~~~~~~~~~~--~~~~~~~~-dg~~~~vd~~g 196 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL----SSPTCYHIHPGAP--STFYLLCA-QGGLAKTDHAG 196 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc----CCCceEEEEeCCC--ceEEEEcC-CCCEEEEECCC
Confidence 468899999999999999875 68899999 65443222 2 2244466666655 67777643 35666666633
Q ss_pred CCcEEEEecc---cccce--eEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 227 SNRSTIISTK---IYWPN--GLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 227 ~~~~~i~~~~---~~~P~--glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
.....+.... -..|. ..++....+.+||+.... .+.++++
T Consensus 197 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------------~v~vid~ 241 (373)
T 2mad_H 197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG-----------------------------------KILQADI 241 (373)
T ss_pred cEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc-----------------------------------eEEEEec
Confidence 3221111000 01121 123344455666554221 2444444
Q ss_pred CCCceEEEE----------eCCe-eee---EEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCC
Q psy17325 302 DGSNASILV----------SGQL-YEA---LALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI 367 (461)
Q Consensus 302 ~g~~~~~l~----------~~~~-p~~---iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l 367 (461)
.+...+++. .... |.+ +++++.+++||++... .-.|++....+.|...++.......-+ .--
T Consensus 242 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~---~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g 317 (373)
T 2mad_H 242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE---QSAWKLHAAAKEVTSVTGLVGQTSSQI-SLG 317 (373)
T ss_pred cCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc---CCcccccCCCCeEEEEECCCCEEEEEE-ECC
Confidence 333221111 0111 555 8999999999997542 011111112456777776544332222 222
Q ss_pred CCceeEEEecCCC-eEEEEcCCCCeEEEEEecCCCCeE
Q psy17325 368 YWPNGLTLDIATR-RVYFADSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 368 ~~p~glaiD~~~~-~ly~~d~~~~~I~~~~~~g~g~~~ 404 (461)
..|.+|+++++++ +||.+....+.|..+|+. ++...
T Consensus 318 ~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~-t~~vv 354 (373)
T 2mad_H 318 HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG-AGDQD 354 (373)
T ss_pred CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC-CCCEE
Confidence 3699999998888 788888888999999993 45543
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.2e-08 Score=81.64 Aligned_cols=102 Identities=27% Similarity=0.664 Sum_probs=70.2
Q ss_pred ccCCCCCCCCCCCC-----------CCCCCCCCCCC--CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee-
Q psy17325 4 RCVNLTKVCDGKTD-----------CPNGADEGPGC--DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ- 69 (461)
Q Consensus 4 ~Ci~~~~~Cd~~~d-----------C~dg~de~~~C--~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~- 69 (461)
+|......|..... |+.|+ .+..| ++++|..++......|.+.+++|.|.|++||. +..|+
T Consensus 7 eC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy-~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~ 81 (135)
T 2vj3_A 7 ECSLGANPCEHAGKCINTLGSFECQCLQGY-TGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYE----GVHCEV 81 (135)
T ss_dssp TTTSSSCSSSTTCEEEECSSSEEEECCTTE-ESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEE----SSSSCE
T ss_pred cccCCCCCCCCCCEeECCCCCEEEECCCCC-cCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCc----CCccee
Confidence 45544455665444 44444 23456 46788766544456799999999999999996 56786
Q ss_pred cCcceecCCccc--CceeeccCCccccCCCCeeeeCCCCce-eeccccc
Q psy17325 70 DMNECEQPGYCS--QMCTNTKGSYICSCNEGYVLEYDNHTC-KAINHSA 115 (461)
Q Consensus 70 d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C-~~~~~~~ 115 (461)
++++|. ...|. ..|.+..++|.|.|++||. +..| .+++++.
T Consensus 82 ~~~~C~-~~~C~~~g~C~~~~g~~~C~C~~G~~----G~~C~~~i~~C~ 125 (135)
T 2vj3_A 82 NTDECA-SSPCLHNGRCLDKINEFQCECPTGFT----GHLCQVDLHHIL 125 (135)
T ss_dssp ECCTTT-TCCSTTTCEEEECSSCEEEECCTTEE----SSSSCEECC---
T ss_pred cCCccc-CCCcCCCCEeECCCCCeEEECCCCCc----CCccCccCcccc
Confidence 788886 34665 4899999999999999996 5667 3566654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.6e-06 Score=75.75 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=144.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCC-CcEEEEecCC-CCCceeEEEcCCCCceEEEEeecC--CCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENG-TNRIVLAKDN-ITQPRGMMLDPSPGTRWLFWTDWG--ENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G-~~~~~l~~~~-~~~p~~ia~d~~~g~~~ly~td~~--~~~~I~~~~~d 225 (461)
.+..+++.+.+..|+++. .+.|.+.++++ .....+.... ...+..+++.|... +|+++... ....|+..+++
T Consensus 43 ~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp CCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETT
T ss_pred ceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECC
Confidence 466788887777777765 57999999887 6555544322 24467899999866 88877622 24788988888
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
+.....+... ..+..+++.+.++.|+++......+ .|+..++++..
T Consensus 119 ~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~--------------------------------~l~~~~~~~~~ 164 (297)
T 2ojh_A 119 GGTPRLMTKN--LPSYWHGWSPDGKSFTYCGIRDQVF--------------------------------DIYSMDIDSGV 164 (297)
T ss_dssp CCCCEECCSS--SSEEEEEECTTSSEEEEEEEETTEE--------------------------------EEEEEETTTCC
T ss_pred CCceEEeecC--CCccceEECCCCCEEEEEECCCCce--------------------------------EEEEEECCCCc
Confidence 7665444322 2367788888888887655433221 36666666555
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
...+..... +..++++|.+..|+++... ....+|+..++++.....+. ........+++++.+..|++
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSR----------TGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECT----------TSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEE
T ss_pred ceEcccCCCccccceECCCCCEEEEEecC----------CCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEE
Confidence 544443333 7889999988877766432 12456777776666555544 33345667889888888887
Q ss_pred EcCC----------CCeEEEEEecCCCCeEEEEEc-cccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 385 ADSK----------LDFIDFCNYDGTGRQQVILID-LMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 385 ~d~~----------~~~I~~~~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
+... ...|...+++ ++....+... ..... ...+++..++..|+++....
T Consensus 234 ~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~---------~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 234 VSYDADVFDHPRDLDVRVQLMDMD-GGNVETLFDLFGGQGT---------MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEETTCCSCCSSEEEEEEEEETT-SCSCEEEEEEEESTTT---------SCSCCBCTTSSEEEEEEECC
T ss_pred EEcCCCCCcccccCceEEEEEecC-CCCceeeeccCCCCcc---------cccceECCCCCEEEEEEecc
Confidence 7542 2568889983 3333222211 11110 11345556677777765443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.7e-05 Score=72.10 Aligned_cols=255 Identities=14% Similarity=0.165 Sum_probs=145.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCC-----eEEEEeCCC-------C-cE-EEEe----cCCCCCceeEEEcCCCCceEEEEe
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLN-----RIEVCDENG-------T-NR-IVLA----KDNITQPRGMMLDPSPGTRWLFWT 211 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~-----~I~~~~~~G-------~-~~-~~l~----~~~~~~p~~ia~d~~~g~~~ly~t 211 (461)
.|.|+++|...+++|++-.+.. ++-.++.+. . .. +... ...+..+.++.+|+. + .|++.
T Consensus 27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~-~--rLWVL 103 (381)
T 3q6k_A 27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDC-R--RLWVV 103 (381)
T ss_dssp CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTT-C--EEEEE
T ss_pred ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCC-C--cEEEE
Confidence 5889999734788999887632 444444321 1 11 1111 235778999999985 6 79999
Q ss_pred ecCC--------------CCcEEEEecCCC--Cc-EEE-Eecc----cccceeEEeec-c------CCeeEEecCCCcee
Q psy17325 212 DWGE--------------NPRIERIGMDGS--NR-STI-ISTK----IYWPNGLTLDI-A------TRRVYFADSKLDFI 262 (461)
Q Consensus 212 d~~~--------------~~~I~~~~~dG~--~~-~~i-~~~~----~~~P~glavD~-~------~~~ly~~d~~~~~i 262 (461)
|.+. .++|...++... .. +.+ +... -...+.|+||. . ...+|++|....-|
T Consensus 104 DtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gL 183 (381)
T 3q6k_A 104 DIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGAL 183 (381)
T ss_dssp ECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEE
T ss_pred eCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcE
Confidence 9652 257888888754 22 222 2111 12467899993 2 57899999877655
Q ss_pred eecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEecc----CCeEEEeecCceeeE
Q psy17325 263 DCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLE----NGMLYYSTLKCTRWL 338 (461)
Q Consensus 263 ~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~----~~~lY~t~~~~~~~l 338 (461)
-+.++...+. .|.+ +..-. +..-.....+|...+ . .....|||++|. ++.|||.-..
T Consensus 184 IVydl~~~~s------wRv~---~~~~~--pd~~~~~~i~G~~~~--~-~~Gi~gIaLsp~~~~~~~~LYf~pls----- 244 (381)
T 3q6k_A 184 FIYDHKKQDS------WNVT---HPTFK--AERPTKFDYGGKEYE--F-KAGIFGITLGDRDSEGNRPAYYLAGS----- 244 (381)
T ss_dssp EEEETTTTEE------EEEE---CGGGS--CCSCEEEEETTEEEE--E-CCCEEEEEECCCCTTSCCEEEEEESS-----
T ss_pred EEEECCCCcE------EEEc---cCCCc--cccCcceEECCEEeE--e-ccCceEEEecCCcCCCCeEEEEEECC-----
Confidence 5444322110 0000 00000 000001111222111 0 011789999998 7889988766
Q ss_pred EEeecCCCCceEEEee----c---CCCeEEEeeCC-CCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCC-----CeEE
Q psy17325 339 FWTDWGENPRIERIGM----D---GSNRSTIISTK-IYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTG-----RQQV 405 (461)
Q Consensus 339 ~~~d~~~~~~I~~~~~----d---G~~~~~l~~~~-l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g-----~~~~ 405 (461)
+.+++++.. + ....+.+.... .....++++|..+|.||+++...+.|.+.+. ++ .+..
T Consensus 245 -------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~--~~~~~~~~n~~ 315 (381)
T 3q6k_A 245 -------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNT--QKMPLRMKNTD 315 (381)
T ss_dssp -------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEET--TSCSBCGGGEE
T ss_pred -------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeC--CCCccccCceE
Confidence 455666652 2 22334444332 2455678898788999999999999999998 44 2333
Q ss_pred EEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCce
Q psy17325 406 ILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEF 445 (461)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~ 445 (461)
++.... .+. .|-++++. +++||++...-+.
T Consensus 316 ~l~~d~-~l~---------~pd~~~i~~~g~Lwv~sn~l~~ 346 (381)
T 3q6k_A 316 VVYTSS-RFV---------FGTDISVDSKGGLWFMSNGFPP 346 (381)
T ss_dssp EEEECT-TCC---------SEEEEEECTTSCEEEEECSCCS
T ss_pred EEEECC-Ccc---------ccCeEEECCCCeEEEEECcchH
Confidence 333322 322 36677774 6899998766443
|
| >2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-08 Score=68.58 Aligned_cols=44 Identities=30% Similarity=0.753 Sum_probs=39.1
Q ss_pred ccee-cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 72 NECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 72 ~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
+||. .++.|+|.|.|++|+|.|.|++||.|..++++|.++++++
T Consensus 2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~ 46 (55)
T 2jkh_L 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP 46 (55)
T ss_dssp CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence 5776 3567999999999999999999999999999999998764
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-05 Score=78.31 Aligned_cols=193 Identities=13% Similarity=0.158 Sum_probs=122.6
Q ss_pred cCccceeeeeeeecCCeEEEEeCCC---------------CeEEEEeCCCC--c-E-EEEecCCC----CCceeEEEc-C
Q psy17325 146 SGLDLVEGLAYDWIGGHIYWLDSRL---------------NRIEVCDENGT--N-R-IVLAKDNI----TQPRGMMLD-P 201 (461)
Q Consensus 146 ~g~~~p~~iavd~~~~~ly~~d~~~---------------~~I~~~~~~G~--~-~-~~l~~~~~----~~p~~ia~d-~ 201 (461)
.+|.++.++.+|. .++|++.|++. -+|.++|+... . . +..+.... .....|++| .
T Consensus 84 ~~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~ 162 (381)
T 3q6k_A 84 KELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVA 162 (381)
T ss_dssp CSSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEES
T ss_pred cceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecc
Confidence 4677889999995 78999999772 16888897765 3 2 22232211 235679999 2
Q ss_pred --C----CCceEEEEeecCCCCcEEEEecCC-CCcEEEEeccc------------------ccceeEEeecc----CCee
Q psy17325 202 --S----PGTRWLFWTDWGENPRIERIGMDG-SNRSTIISTKI------------------YWPNGLTLDIA----TRRV 252 (461)
Q Consensus 202 --~----~g~~~ly~td~~~~~~I~~~~~dG-~~~~~i~~~~~------------------~~P~glavD~~----~~~l 252 (461)
. .+ ++|+||. ..+.|...++.. ..++++ +..+ ....|||+++. .+.|
T Consensus 163 ~~~~~c~~~--~aYItD~-~~~gLIVydl~~~~swRv~-~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~L 238 (381)
T 3q6k_A 163 NPKGDCSET--FVYITNF-LRGALFIYDHKKQDSWNVT-HPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPA 238 (381)
T ss_dssp CTTTTSCSE--EEEEEET-TTTEEEEEETTTTEEEEEE-CGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEE
T ss_pred cCCCCCCcc--EEEEEcC-CCCcEEEEECCCCcEEEEc-cCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEE
Confidence 2 45 9999995 456888888864 333333 2111 13345666554 4556
Q ss_pred EEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEe---C-C---CCceEEEEeCCe---eeeEEEec
Q psy17325 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN---M-D---GSNASILVSGQL---YEALALDL 322 (461)
Q Consensus 253 y~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~---~-~---g~~~~~l~~~~~---p~~iavd~ 322 (461)
||.-..+.. ++++. + + ....+.+...+. ..++++|+
T Consensus 239 Yf~plss~~----------------------------------ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~ 284 (381)
T 3q6k_A 239 YYLAGSAIK----------------------------------VYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDP 284 (381)
T ss_dssp EEEESSCSE----------------------------------EEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECT
T ss_pred EEEECCCCc----------------------------------EEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeC
Confidence 665544433 23222 1 1 233444444431 44678988
Q ss_pred cCCeEEEeecCceeeEEEeecCCCCceEEEeecC-----CCeEEEe-eCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-----SNRSTII-STKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-----~~~~~l~-~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
.+|.||+++.. ...|.+.+.++ .+..+++ ...+.||.+|++| .++.||+...+..
T Consensus 285 ~~G~ly~~~~~------------~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~-~~g~Lwv~sn~l~ 345 (381)
T 3q6k_A 285 KTKVIFFAEAN------------TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVD-SKGGLWFMSNGFP 345 (381)
T ss_dssp TTCEEEEEESS------------SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEEC-TTSCEEEEECSCC
T ss_pred CCCeEEEEecc------------CCeEEEEeCCCCccccCceEEEEECCCccccCeEEEC-CCCeEEEEECcch
Confidence 89999999988 77788887776 3445554 4579999999999 6789999876543
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-08 Score=88.23 Aligned_cols=92 Identities=34% Similarity=0.726 Sum_probs=61.4
Q ss_pred CCCCCCC---CCCCC-CCCc--ccCCCCCC----CCCceeCCC----CceEeCCCC------------------------
Q psy17325 17 DCPNGAD---EGPGC-DLAE--CKHKFGLC----SNTCHPTPL----GALCTCPPG------------------------ 58 (461)
Q Consensus 17 dC~dg~d---e~~~C-~~~~--C~~~~~~C----~~~C~~~~~----~~~C~C~~G------------------------ 58 (461)
.|+.|+- .+..| ++++ |......| ...|.+..+ +|.|.|++|
T Consensus 27 ~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~~~~~C~~C~~~~~~~y~C~C~~ 106 (162)
T 1uzk_A 27 DCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPG 106 (162)
T ss_dssp ECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCEETTTTEECCCTTSHHHHHHCTT
T ss_pred eCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCCcCCCcccCCCCCCCCceeECCC
Confidence 4676663 24567 4555 76543333 345666554 455555554
Q ss_pred ---CeecCCCCceecCcceec-CCcccC-ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 59 ---EILSNDSVTCQDMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 59 ---~~l~~~~~~C~d~~eC~~-~~~C~~-~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
|....++..|++++||.. +..|.+ .|+|+.++|.|.|++||.+..++++|
T Consensus 107 g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C 161 (162)
T 1uzk_A 107 GEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161 (162)
T ss_dssp CTTEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBB
T ss_pred CCCcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCcc
Confidence 444444567899999984 457874 99999999999999999999888887
|
| >1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-08 Score=84.54 Aligned_cols=71 Identities=32% Similarity=0.652 Sum_probs=50.7
Q ss_pred CCCcccCCCCCC-CCCceeCCCCceEeCCCCCeecCCCCceecCcc--eecC-Ccc----cCceeeccC----CccccCC
Q psy17325 29 DLAECKHKFGLC-SNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE--CEQP-GYC----SQMCTNTKG----SYICSCN 96 (461)
Q Consensus 29 ~~~~C~~~~~~C-~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~e--C~~~-~~C----~~~C~~~~g----~~~C~C~ 96 (461)
+++||.. +..| ...|++++++|.|.|++||.+..++++|+++++ |... ..| ...|.+..+ +|.|.|+
T Consensus 2 dideC~~-~~~C~~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~ 80 (162)
T 1uzk_A 2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCS 80 (162)
T ss_dssp CCCGGGS-TTSSBTSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTT
T ss_pred ccccCCC-CCCCCCCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCC
Confidence 4678874 2346 467999999999999999999888999999987 8632 223 447777766 6777777
Q ss_pred CCee
Q psy17325 97 EGYV 100 (461)
Q Consensus 97 ~g~~ 100 (461)
+||.
T Consensus 81 ~G~~ 84 (162)
T 1uzk_A 81 LGKA 84 (162)
T ss_dssp TCCE
T ss_pred CCCC
Confidence 7665
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-08 Score=67.67 Aligned_cols=42 Identities=26% Similarity=0.634 Sum_probs=31.9
Q ss_pred ccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcce
Q psy17325 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
|..++..|.+.|.+++++|.|.|++||.|..++++|++++||
T Consensus 1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~ 42 (51)
T 1kig_L 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence 444566777778888888888888888877778888887776
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=4.2e-08 Score=68.46 Aligned_cols=52 Identities=21% Similarity=0.554 Sum_probs=44.3
Q ss_pred ccCCCCCCCCCceeCC-CCceEeCCCCCeecCCCCceecCcceecCCcccCceeecc
Q psy17325 33 CKHKFGLCSNTCHPTP-LGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTK 88 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~ 88 (461)
|..+++.|++.|.+++ ++|.|.|++||.|..|+++|.++++ ..|.+.|.|..
T Consensus 2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~----~pC~~~c~n~~ 54 (59)
T 2wph_E 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP----FPCGRVSVSQT 54 (59)
T ss_dssp TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS----SCTTCCCSCCC
T ss_pred CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC----CCCCCcccccc
Confidence 5667788999999999 5999999999999999999998754 47888887754
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.52 E-value=5.3e-05 Score=72.49 Aligned_cols=188 Identities=16% Similarity=0.137 Sum_probs=114.9
Q ss_pred eEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCC---CCce--EEEEeecCC--CCcEEEEecCCCC--cEEE
Q psy17325 162 HIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPS---PGTR--WLFWTDWGE--NPRIERIGMDGSN--RSTI 232 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~---~g~~--~ly~td~~~--~~~I~~~~~dG~~--~~~i 232 (461)
.++++-...+.+.+.+++|+....+-. .++.++.+-|. .|+. .+|.++ .. ..+|...++|... .+.+
T Consensus 41 s~ii~t~k~~gL~Vydl~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSLDGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEETTSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEEcCCCCEEEEcCCCcEEEEccC---CCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCCCCceeec
Confidence 345544445789999999988777632 34677666542 1111 468888 44 5678777776322 2223
Q ss_pred ------EecccccceeEEe--eccCCe--eEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEe-C
Q psy17325 233 ------ISTKIYWPNGLTL--DIATRR--VYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN-M 301 (461)
Q Consensus 233 ------~~~~~~~P~glav--D~~~~~--ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~-~ 301 (461)
+.+.+..|.||++ ++.+++ +|+++.. +.++. +.... .
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q-------------------------------~~l~~~~ 164 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQ-------------------------------YELKADK 164 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEE-------------------------------EEEEECT
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEE-------------------------------EEEEeCC
Confidence 1244578999999 876664 6666665 33321 11111 1
Q ss_pred CCCce-E---EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC---CeEEEe---eCCCC-Cc
Q psy17325 302 DGSNA-S---ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS---NRSTII---STKIY-WP 370 (461)
Q Consensus 302 ~g~~~-~---~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~---~~~~l~---~~~l~-~p 370 (461)
+|+.. + .+-...-|+++++|+..+.||+++.. .+ |++.+.+.. ..+.+. ...+. .|
T Consensus 165 ~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd------------~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDv 231 (355)
T 3amr_A 165 NGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED------------EA-IWKFSAEPDGGSNGTVIDRADGRHLTRDI 231 (355)
T ss_dssp TSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT------------TE-EEEEECSTTSCSCCEEEEEBSSSSBCSCE
T ss_pred CCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc------------ce-EEEEeCCcCCCCCceEEEEecCCccccCc
Confidence 22111 1 11111129999999999999998876 44 888885532 233332 13344 79
Q ss_pred eeEEEecCC---CeEEEEcCCCCeEEEEEec
Q psy17325 371 NGLTLDIAT---RRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 371 ~glaiD~~~---~~ly~~d~~~~~I~~~~~~ 398 (461)
.||+|.+.. ++|++++.+.++...++..
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999996433 5799999888888888883
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-06 Score=82.87 Aligned_cols=248 Identities=13% Similarity=0.122 Sum_probs=145.2
Q ss_pred eeEEEecc--ccceeecccccCcccccceEEEcCccceeeeee-e-ecCCeEEEEe-----------------CCCCeEE
Q psy17325 116 AFLIISNR--HSILVADLEEKGKDHRAQDIVVSGLDLVEGLAY-D-WIGGHIYWLD-----------------SRLNRIE 174 (461)
Q Consensus 116 ~~l~~~~~--~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iav-d-~~~~~ly~~d-----------------~~~~~I~ 174 (461)
.++++... ..|.++++..... .+.+-.+.-..|.|+++ . +.++.+|.+. ...+.+.
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~---~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKC---DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEE---EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceE---eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 34555442 3466666653211 11111233357999998 4 7899999994 3345788
Q ss_pred EEeCCCCcEE-EEecCCCCCceeEEEcCCCCceEEEEeecCCCC------------------------------------
Q psy17325 175 VCDENGTNRI-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENP------------------------------------ 217 (461)
Q Consensus 175 ~~~~~G~~~~-~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~------------------------------------ 217 (461)
++|.+..... ++..++ +|.+++++|..+ ++|+|...++.
T Consensus 179 vID~~t~~v~~qI~Vgg--~pd~~~~spdGk--~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG--NLDNCDADYEGK--WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEETTTTEEEEEEEESS--CCCCEEECSSSS--EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEECCCCeEEEEEEeCC--CccceEECCCCC--EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 9998865433 222233 699999999977 99999844321
Q ss_pred cEEEEecCC---CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 218 RIERIGMDG---SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 218 ~I~~~~~dG---~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
.+..++... +.....+.. -..|.|+++.+.++++|+++...+.+...+....+.
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~---------------------- 311 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA---------------------- 311 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH----------------------
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccc----------------------
Confidence 122222221 110111211 137999999999999999999887654322210000
Q ss_pred eeeEEeCCCCceEEEEe--CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-------CC-eEEEe
Q psy17325 295 KIGKANMDGSNASILVS--GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-------SN-RSTII 363 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~~--~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-------~~-~~~l~ 363 (461)
...-+++-. ..++.. .++ |+.+++|+.+ ++|.+..- .+.|.+.+++. .. ..++-
T Consensus 312 -~~~~~l~~~-~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l------------dsqV~kwdi~~a~~~~~g~~~~~vi~ 376 (595)
T 1fwx_A 312 -VFYENADPR-SAVVAEPELGLGPLHTAFDGRG-NAYTSLFL------------DSQVVKWNIEDAIRAYAGEKVDPIKD 376 (595)
T ss_dssp -HHHSCCCGG-GGEEECCBCCSCEEEEEECTTS-EEEEEETT------------TTEEEEEEHHHHHHHHHTCSCCCEEE
T ss_pred -ccccccCcc-cceEEEcCCCCCcceEEECCCC-eEEEEEec------------CCcEEEEEhhHhhhhhcccccceeEE
Confidence 000000100 112222 223 9999999976 99998776 67777777654 11 23332
Q ss_pred e-CCCCCc------eeEEEecCCCeEEEEcCCC-CeE-----------EEEEecCCCCeEEEEEcc
Q psy17325 364 S-TKIYWP------NGLTLDIATRRVYFADSKL-DFI-----------DFCNYDGTGRQQVILIDL 410 (461)
Q Consensus 364 ~-~~l~~p------~glaiD~~~~~ly~~d~~~-~~I-----------~~~~~~g~g~~~~~~~~~ 410 (461)
. .--.+| .|+++++++++||.++... +++ ..+++ +|...+++.+.
T Consensus 377 kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di--s~~~m~lv~d~ 440 (595)
T 1fwx_A 377 KLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI--SGDKMVLVHDG 440 (595)
T ss_dssp EEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC--SSSSCEEEEEE
T ss_pred EeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEc--CCCcEEEEEEE
Confidence 1 122244 7888899999999998877 676 77888 56655555543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00022 Score=73.78 Aligned_cols=228 Identities=7% Similarity=-0.019 Sum_probs=135.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeC---CCCcEEEEecCCCCCceeEEEc----CCCCceEEEEeecCCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDE---NGTNRIVLAKDNITQPRGMMLD----PSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~---~G~~~~~l~~~~~~~p~~ia~d----~~~g~~~ly~td~~~~~~I~~~ 222 (461)
.|.++++++.++.+|+++. .+.|.++|+ .++....+..+ ..|++|+++ |..+ ++|+++. ..+.|..+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk--~l~v~n~-~~~~v~Vi 271 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDK--YAIAGAY-WPPQYVIM 271 (567)
T ss_dssp CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTT--EEEEEEE-ETTEEEEE
T ss_pred CccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCC--EEEEEEc-cCCeEEEE
Confidence 5889999999999999874 689999998 44444443332 459999999 5766 9999984 34577777
Q ss_pred ecCCCCcEEEEeccc-----------ccceeEEeeccCCeeEEecCCCceeeecccceee-----eeccc---------e
Q psy17325 223 GMDGSNRSTIISTKI-----------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT-----NVNYS---------T 277 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~-----------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~-----~v~~~---------~ 277 (461)
+.........+...- ..+.+|+.......++++-...+.|..++..... .+... .
T Consensus 272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p 351 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 351 (567)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECC
Confidence 654333322232210 1334666655555556665556666555432211 11111 1
Q ss_pred eeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC-Ce-e---eeEE-EeccCCeEEEeecCceeeEEEeecCCCCceEE
Q psy17325 278 IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG-QL-Y---EALA-LDLENGMLYYSTLKCTRWLFWTDWGENPRIER 351 (461)
Q Consensus 278 ~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~-~~-p---~~ia-vd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~ 351 (461)
=.+++|-++..+ ++|.+.+.........+.. +. | +|+. ++|..+.+|++... ..+.|..
T Consensus 352 dgr~~~va~~~s----n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~-----------g~~~Vsv 416 (567)
T 1qks_A 352 SHRYFITAANAR----NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM-----------GDDSVAL 416 (567)
T ss_dssp TSCEEEEEEGGG----TEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBS-----------SSSEEEE
T ss_pred CCCEEEEEeCCC----CeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCC-----------CCCeEEE
Confidence 134677777666 5788888775443333333 22 4 4665 57777777765432 1456666
Q ss_pred EeecCCC-----eEEE--eeCCCCCceeEEEecCCCeEEEEcCC------CCeEEEEEec
Q psy17325 352 IGMDGSN-----RSTI--ISTKIYWPNGLTLDIATRRVYFADSK------LDFIDFCNYD 398 (461)
Q Consensus 352 ~~~dG~~-----~~~l--~~~~l~~p~glaiD~~~~~ly~~d~~------~~~I~~~~~~ 398 (461)
.+.+... .+++ +...-..+..|++.+.+.+||+.... .+.|..++++
T Consensus 417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~ 476 (567)
T 1qks_A 417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 476 (567)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence 6665411 1222 11222345668888788888887643 3589999984
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00011 Score=72.80 Aligned_cols=209 Identities=9% Similarity=0.068 Sum_probs=138.1
Q ss_pred cceeeeeeeecCCeEEEEeCCC--CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRL--NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~--~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~~~I~~~~~d 225 (461)
..+..+++.+.++.|+++.... ..|.+.++.+.....+.... .....+++.|... +|+++.. .....|+..++.
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~-~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS-SCEEEEEECTTSS--EEEEEECTTSSCEEEEEETT
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCC-CcccCEEEcCCCC--EEEEEEecCCCceEEEEECC
Confidence 3566788888888888877543 58999998766655554322 4578899999866 7886642 223579999988
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
+.....+.. .-.....+++.+.++.|+++...... ..|++.++++..
T Consensus 256 ~~~~~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~--------------------------------~~i~~~d~~~~~ 302 (415)
T 2hqs_A 256 SGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGR--------------------------------PQVYKVNINGGA 302 (415)
T ss_dssp TCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSS--------------------------------CEEEEEETTSSC
T ss_pred CCCEEeCcC-CCCcccceEECCCCCEEEEEECCCCC--------------------------------cEEEEEECCCCC
Confidence 655443332 23456778888888888876543221 246777777665
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
.+.+..... ...+++.|.++.|+++... .....|+..++++.....+. .. .....+++.+.+..|++
T Consensus 303 ~~~l~~~~~~~~~~~~spdG~~l~~~~~~----------~g~~~i~~~d~~~~~~~~l~-~~-~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 303 PQRITWEGSQNQDADVSSDGKFMVMVSSN----------GGQQHIAKQDLATGGVQVLS-ST-FLDETPSLAPNGTMVIY 370 (415)
T ss_dssp CEECCCSSSEEEEEEECTTSSEEEEEEEC----------SSCEEEEEEETTTCCEEECC-CS-SSCEEEEECTTSSEEEE
T ss_pred EEEEecCCCcccCeEECCCCCEEEEEECc----------CCceEEEEEECCCCCEEEec-CC-CCcCCeEEcCCCCEEEE
Confidence 444333222 6778999988888776542 11346888888776665444 22 37888999988888888
Q ss_pred EcCCCC--eEEEEEecCCCCeEEEE
Q psy17325 385 ADSKLD--FIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 385 ~d~~~~--~I~~~~~~g~g~~~~~~ 407 (461)
+....+ .|+.+++ +|.....+
T Consensus 371 ~s~~~~~~~l~~~d~--~g~~~~~l 393 (415)
T 2hqs_A 371 SSSQGMGSVLNLVST--DGRFKARL 393 (415)
T ss_dssp EEEETTEEEEEEEET--TSCCEEEC
T ss_pred EEcCCCccEEEEEEC--CCCcEEEe
Confidence 755444 7899998 56654433
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-05 Score=76.75 Aligned_cols=181 Identities=11% Similarity=0.113 Sum_probs=121.3
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-CCCcEEEEecCCCCcEEEEecccccceeEEeeccC
Q psy17325 171 NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 249 (461)
Q Consensus 171 ~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~-~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~ 249 (461)
++|.+.+++|.....+.... .....+++.|... +|+++... ....|+..++.+.....+.. .-.....+++.+.+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~~~l~~-~~~~~~~~~~spdg 234 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDG 234 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-SCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTS
T ss_pred ceEEEEcCCCCCCEEEeCCC-CcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcEEEeec-CCCcccCEEEcCCC
Confidence 68999999988766665432 4578899999866 77777632 23689999998665554432 23456789999988
Q ss_pred CeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEE
Q psy17325 250 RRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLY 328 (461)
Q Consensus 250 ~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY 328 (461)
+.|+++....+. ..|++.++.+.....+..... ...+++.|.+..|+
T Consensus 235 ~~la~~~~~~g~--------------------------------~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~ 282 (415)
T 2hqs_A 235 SKLAFALSKTGS--------------------------------LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282 (415)
T ss_dssp SEEEEEECTTSS--------------------------------CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEEecCCC--------------------------------ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEE
Confidence 888876543221 246667776555444433222 67788888887777
Q ss_pred EeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC--CCeEEEEEec
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK--LDFIDFCNYD 398 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~--~~~I~~~~~~ 398 (461)
++... ....+|+..++++...+.+. ........+++.++++.|+++... ...|...+++
T Consensus 283 ~~s~~----------~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 283 FTSDQ----------AGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp EEECT----------TSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred EEECC----------CCCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 65432 22457888888776655443 333456788999888889887554 4589999983
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-08 Score=67.07 Aligned_cols=42 Identities=29% Similarity=0.556 Sum_probs=35.3
Q ss_pred ccCCCCCCCCCceeCCC-CceEeCCCCCeecCCCCceecCcce
Q psy17325 33 CKHKFGLCSNTCHPTPL-GALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
|..+++.|++.|.++++ +|.|.|++||.|..++++|.+++||
T Consensus 2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec 44 (53)
T 2bz6_L 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCccc
Confidence 55567778888988888 6889999999888888899988887
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-05 Score=72.57 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=122.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++++ .++++++ ..+.|...+++|+..-.+-...-..+.+.++.+. | .+++++.+.+.+|..++.+|+..
T Consensus 38 ~~~~~~~~p-dG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~d-G--~~lv~~~~~~~~v~~vd~~Gk~l 111 (276)
T 3no2_A 38 ECNSVAATK-AGEILFS--YSKGAKMITRDGRELWNIAAPAGCEMQTARILPD-G--NALVAWCGHPSTILEVNMKGEVL 111 (276)
T ss_dssp CCCEEEECT-TSCEEEE--CBSEEEEECTTSCEEEEEECCTTCEEEEEEECTT-S--CEEEEEESTTEEEEEECTTSCEE
T ss_pred CCcCeEECC-CCCEEEe--CCCCEEEECCCCCEEEEEcCCCCccccccEECCC-C--CEEEEecCCCCEEEEEeCCCCEE
Confidence 466677775 5567774 4678999999888766554322124566777775 4 47777744367888888888765
Q ss_pred EEEEec-----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 230 STIIST-----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 230 ~~i~~~-----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
..+... ....|.+++++. ++++++++... ++|...+++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~----------------------------------~~v~~~d~~G~ 156 (276)
T 3no2_A 112 SKTEFETGIERPHAQFRQINKNK-KGNYLVPLFAT----------------------------------SEVREIAPNGQ 156 (276)
T ss_dssp EEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTT----------------------------------TEEEEECTTSC
T ss_pred EEEeccCCCCcccccccCceECC-CCCEEEEecCC----------------------------------CEEEEECCCCC
Confidence 444321 123577788876 56666777655 35777788876
Q ss_pred ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeC-----CCCCceeEEEecC
Q psy17325 305 NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIIST-----KIYWPNGLTLDIA 378 (461)
Q Consensus 305 ~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~-----~l~~p~glaiD~~ 378 (461)
....+-....|.++++.+ +|.+++++.. +++|...+.+ |+..-.+... .+..|.+++++ .
T Consensus 157 ~~w~~~~~~~~~~~~~~~-~g~~~v~~~~------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~-~ 222 (276)
T 3no2_A 157 LLNSVKLSGTPFSSAFLD-NGDCLVACGD------------AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL-Q 222 (276)
T ss_dssp EEEEEECSSCCCEEEECT-TSCEEEECBT------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC-T
T ss_pred EEEEEECCCCccceeEcC-CCCEEEEeCC------------CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc-C
Confidence 655544433488888875 5677777665 5678888877 7765555422 35679999998 6
Q ss_pred CCeEEEEcC
Q psy17325 379 TRRVYFADS 387 (461)
Q Consensus 379 ~~~ly~~d~ 387 (461)
++++|+++.
T Consensus 223 ~G~i~v~~~ 231 (276)
T 3no2_A 223 NGGLYICNW 231 (276)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEec
Confidence 899999985
|
| >1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-07 Score=63.89 Aligned_cols=40 Identities=33% Similarity=0.761 Sum_probs=36.1
Q ss_pred cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 76 ~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
.++.|+|.|.|++|+|.|.|++||.|..++++|.++++++
T Consensus 4 ~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~p 43 (51)
T 1kig_L 4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP 43 (51)
T ss_dssp TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred CCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCccc
Confidence 3567999999999999999999999999999999988753
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-05 Score=69.42 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=116.5
Q ss_pred CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC-CCcEEEEecc-cccceeEEeec
Q psy17325 170 LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG-SNRSTIISTK-IYWPNGLTLDI 247 (461)
Q Consensus 170 ~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG-~~~~~i~~~~-~~~P~glavD~ 247 (461)
.+.|.+.++.+.....+... -..+.++++.|... +|+++. ...|...++++ .....+.... ...+..+++.+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~-~~~v~~~~~spdg~--~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT-PELFEAPNWSPDGK--YLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE-SSCCEEEEECTTSS--EEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred ceeEEEEeCCCCceeeeccC-CcceEeeEECCCCC--EEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 45666677665554444432 24578999999866 777765 35899999987 5554444322 24567799998
Q ss_pred cCCeeEEecCCCc-eeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCe
Q psy17325 248 ATRRVYFADSKLD-FIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGM 326 (461)
Q Consensus 248 ~~~~ly~~d~~~~-~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~ 326 (461)
.++.|+++....+ . ..|+..++++.....+.....+..+++.|.+..
T Consensus 95 dg~~l~~~~~~~~~~--------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 142 (297)
T 2ojh_A 95 DGALYAISDKVEFGK--------------------------------SAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKS 142 (297)
T ss_dssp TSSEEEEEECTTTSS--------------------------------CEEEEEETTCCCCEECCSSSSEEEEEECTTSSE
T ss_pred CCCEEEEEEeCCCCc--------------------------------ceEEEEECCCCceEEeecCCCccceEECCCCCE
Confidence 8888888763321 1 246667766655544433323677889988887
Q ss_pred EEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc--CCCCeEEEEEecCCCCeE
Q psy17325 327 LYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD--SKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 327 lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d--~~~~~I~~~~~~g~g~~~ 404 (461)
|+++... ....+|+.+++++.....+. ..-..+..+++++.+..|+++. .+...|+.+++ ++...
T Consensus 143 l~~~~~~----------~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~--~~~~~ 209 (297)
T 2ojh_A 143 FTYCGIR----------DQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV--DGSSV 209 (297)
T ss_dssp EEEEEEE----------TTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--TSSCE
T ss_pred EEEEECC----------CCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECC--CCCCc
Confidence 7765433 11225666666665554444 4445678899998888888774 34556777776 44443
Q ss_pred E
Q psy17325 405 V 405 (461)
Q Consensus 405 ~ 405 (461)
.
T Consensus 210 ~ 210 (297)
T 2ojh_A 210 E 210 (297)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00031 Score=67.15 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=96.4
Q ss_pred eEEEEeCC--CCeEEEEeCC--CCcEEEEe------cCCCCCceeEEE--cCCCCceEEEEeecCCCCcEEEEec----C
Q psy17325 162 HIYWLDSR--LNRIEVCDEN--GTNRIVLA------KDNITQPRGMML--DPSPGTRWLFWTDWGENPRIERIGM----D 225 (461)
Q Consensus 162 ~ly~~d~~--~~~I~~~~~~--G~~~~~l~------~~~~~~p~~ia~--d~~~g~~~ly~td~~~~~~I~~~~~----d 225 (461)
.+|.++.. .++|.+++++ ....+.+. ...+..|.||++ ++..++.++|+++ . ...+....+ +
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k-~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-K-EGEFEQYELKADKN 165 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-S-SSEEEEEEEEECTT
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-C-CCeEEEEEEEeCCC
Confidence 47999988 8999888665 22333331 144578999999 8877744688887 3 356666444 2
Q ss_pred CCCcEEEEec--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC-
Q psy17325 226 GSNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD- 302 (461)
Q Consensus 226 G~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~- 302 (461)
|+....++.+ --..|.|+++|...++||+++...+ |.+...+
T Consensus 166 g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G-----------------------------------Iw~~da~p 210 (355)
T 3amr_A 166 GYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA-----------------------------------IWKFSAEP 210 (355)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-----------------------------------EEEEECST
T ss_pred CcccceEEEEecCCCCcceEEEcCCCCeEEEecccce-----------------------------------EEEEeCCc
Confidence 3222233322 1247999999999999999999862 6666644
Q ss_pred -CC-ceEEEEe---CCe---eeeEEEeccC---CeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 303 -GS-NASILVS---GQL---YEALALDLEN---GMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 303 -g~-~~~~l~~---~~~---p~~iavd~~~---~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
+. .++++.. ..+ ++||++.+.. ++|++|+.+...|..|---+...-+-++
T Consensus 211 ~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 211 DGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 32 2333322 222 9999997544 5899998875556655332233334444
|
| >2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-07 Score=75.77 Aligned_cols=78 Identities=29% Similarity=0.684 Sum_probs=60.5
Q ss_pred CCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCcee-cCcceecCCccc--CceeeccCCccccCCCCeeeeC
Q psy17325 29 DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ-DMNECEQPGYCS--QMCTNTKGSYICSCNEGYVLEY 103 (461)
Q Consensus 29 ~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~l~~ 103 (461)
+++||......|.+ .|++..++|.|.|++||. +..|+ ++++|.. ..|. ..|.+..++|.|.|++||.
T Consensus 4 dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~----G~~C~~~~~~C~~-~~C~~~~~C~~~~g~~~C~C~~G~~--- 75 (135)
T 2vj3_A 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVS-NPCQNDATCLDQIGEFQCICMPGYE--- 75 (135)
T ss_dssp CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTSCEECCTTTT-CCCCSSCEEEECSSCEEEECCTTEE---
T ss_pred ccccccCCCCCCCCCCEeECCCCCEEEECCCCCc----CCcccccCccCCC-CCCCCCCEEeCCCCCceeeCCCCCc---
Confidence 46788765566765 799999999999999996 56785 8899963 4564 4899999999999999996
Q ss_pred CCCcee-eccccc
Q psy17325 104 DNHTCK-AINHSA 115 (461)
Q Consensus 104 ~~~~C~-~~~~~~ 115 (461)
+..|. +++++.
T Consensus 76 -G~~C~~~~~~C~ 87 (135)
T 2vj3_A 76 -GVHCEVNTDECA 87 (135)
T ss_dssp -SSSSCEECCTTT
T ss_pred -CCcceecCCccc
Confidence 45563 455543
|
| >2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-07 Score=63.50 Aligned_cols=40 Identities=33% Similarity=0.735 Sum_probs=36.1
Q ss_pred cCCcccCceeeccC-CccccCCCCeeeeCCCCceeeccccc
Q psy17325 76 QPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 76 ~~~~C~~~C~~~~g-~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
.++.|+|.|.|+++ +|.|.|++||.|..++++|.++++++
T Consensus 5 ~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~ 45 (53)
T 2bz6_L 5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP 45 (53)
T ss_dssp GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred CCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCcccc
Confidence 35689999999999 79999999999999999999998764
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-07 Score=71.00 Aligned_cols=75 Identities=17% Similarity=0.512 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee--cCcceecCCccc--Cceeecc--CC
Q psy17325 17 DCPNGADEGPGCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ--DMNECEQPGYCS--QMCTNTK--GS 90 (461)
Q Consensus 17 dC~dg~de~~~C~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~--d~~eC~~~~~C~--~~C~~~~--g~ 90 (461)
.|.+|+- +..|++++|...+ |.+..++|.|.|++||. .|+ ++++|.. ..|. ..|.+.. ++
T Consensus 5 ~C~~g~~-g~~c~~~~c~~~p------C~n~~~~y~C~C~~G~~------~C~~~~~~~C~~-~pC~ngg~C~~~~~~~~ 70 (91)
T 1tpg_A 5 ICRDEKT-QMIYQQHQSWLRP------VLRSNRVEYCWCNSGRA------QCHSVPVKSCSE-PRCFNGGTCQQALYFSD 70 (91)
T ss_dssp CCBCSSS-CCBCCSSCEEEEE------CSSSSCEEEEECSSSCC------BCCEECEEECSS-CCSCTTCEEEEESSSSC
T ss_pred ECCCCCc-CCeECCCcccCCc------cccCCCCcEeECCCCCc------ccccCcCCcccC-CCCCCCCEeecCCCCCC
Confidence 4888874 4678888886443 56678899999999994 786 7899963 4575 3799987 99
Q ss_pred ccccCCCCeeeeCCCCcee
Q psy17325 91 YICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 91 ~~C~C~~g~~l~~~~~~C~ 109 (461)
|.|.|++||. ++.|.
T Consensus 71 ~~C~C~~G~~----G~~Ce 85 (91)
T 1tpg_A 71 FVCQCPEGFA----GKSCE 85 (91)
T ss_dssp EEEECCTTCB----SSSCC
T ss_pred eEeECCCCCc----CCcCC
Confidence 9999999994 66774
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.8e-07 Score=75.04 Aligned_cols=66 Identities=32% Similarity=0.770 Sum_probs=51.1
Q ss_pred CCcccCCCCCCCCCce-------eCCCCceEeCCCCCeecCCCCcee-cCcceecCCccc--CceeeccCCccccCCCCe
Q psy17325 30 LAECKHKFGLCSNTCH-------PTPLGALCTCPPGEILSNDSVTCQ-DMNECEQPGYCS--QMCTNTKGSYICSCNEGY 99 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~-------~~~~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~ 99 (461)
.++|..++......|. +.+++|.|.|++||. +..|+ ++++|. ...|. ..|.+..++|.|.|++||
T Consensus 52 ~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~----G~~C~~~i~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~ 126 (143)
T 4d90_A 52 AGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFN----GIHCQHNINECE-VEPCKNGGICTDLVANYSCECPGEF 126 (143)
T ss_dssp CCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTEE----STTSCEECCTTT-TCCSCTTCEEEEETTEEEEECCTTC
T ss_pred CCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCCc----CCCcccCCCcCC-CCCCCCCCEeECCCCCeEeECCCCC
Confidence 3566554433334688 566899999999995 78897 999996 34564 589999999999999999
Q ss_pred e
Q psy17325 100 V 100 (461)
Q Consensus 100 ~ 100 (461)
.
T Consensus 127 ~ 127 (143)
T 4d90_A 127 M 127 (143)
T ss_dssp B
T ss_pred c
Confidence 5
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.4e-05 Score=81.13 Aligned_cols=197 Identities=9% Similarity=-0.022 Sum_probs=123.7
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-C--CCCcEEEEec--C
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-G--ENPRIERIGM--D 225 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~--~~~~I~~~~~--d 225 (461)
...+++.+.++.|.++....+.+.+..++|...+.+.........++++.|. . .+|+++. + ....|+.+++ +
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEEEEETTST
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-e--EEEEeccCCCCcceEEEEEeccCC
Confidence 4567777778888877655677777777777766665433234567777776 5 8999884 1 2357888988 7
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
|... .+. .......+++.+..+.++++....+. +...++++..
T Consensus 101 g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~~----------------------------------~~l~d~~~g~ 143 (582)
T 3o4h_A 101 GEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATEDR----------------------------------VALYALDGGG 143 (582)
T ss_dssp TCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSSC----------------------------------EEEEEEETTE
T ss_pred Cccc-ccc--CCCCceeeeeCCCCCeEEEEecCCCC----------------------------------ceEEEccCCc
Confidence 7655 221 12233345666667666665443322 2233555554
Q ss_pred eEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 306 ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 306 ~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
.+.+.... ...++++|.+..|+++... -+....|+..++++...+.+. ........+++.+++..|+.+
T Consensus 144 ~~~l~~~~-~~~~~~spDG~~la~~~~~---------~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~ 212 (582)
T 3o4h_A 144 LRELARLP-GFGFVSDIRGDLIAGLGFF---------GGGRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGL 212 (582)
T ss_dssp EEEEEEES-SCEEEEEEETTEEEEEEEE---------ETTEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEE
T ss_pred EEEeecCC-CceEEECCCCCEEEEEEEc---------CCCCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEc
Confidence 44444322 2678899988888765322 112256888888776666665 444556889999888889865
Q ss_pred cCCC-CeEEEEEec
Q psy17325 386 DSKL-DFIDFCNYD 398 (461)
Q Consensus 386 d~~~-~~I~~~~~~ 398 (461)
+... ..|+..+++
T Consensus 213 ~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 213 ETAREARLVTVDPR 226 (582)
T ss_dssp ECSSCEEEEEECTT
T ss_pred cCCCeeEEEEEcCC
Confidence 5432 389999993
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.7e-07 Score=61.88 Aligned_cols=42 Identities=43% Similarity=1.041 Sum_probs=36.3
Q ss_pred ecCcceec---------CCcccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 69 QDMNECEQ---------PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 69 ~d~~eC~~---------~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
+|++||.. ...|.+.|.|++|+|.|.|++||.+..++++|.+
T Consensus 2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 46888874 2579999999999999999999999989999964
|
| >2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6.4e-07 Score=75.23 Aligned_cols=70 Identities=34% Similarity=0.743 Sum_probs=53.9
Q ss_pred CceeCCCCceEeCCCCCeec-----CCCCceecCcceecC--Cccc--CceeeccCCccccCCCCeeeeCC--------C
Q psy17325 43 TCHPTPLGALCTCPPGEILS-----NDSVTCQDMNECEQP--GYCS--QMCTNTKGSYICSCNEGYVLEYD--------N 105 (461)
Q Consensus 43 ~C~~~~~~~~C~C~~G~~l~-----~~~~~C~d~~eC~~~--~~C~--~~C~~~~g~~~C~C~~g~~l~~~--------~ 105 (461)
.|++ .|.|.|++||... .++..|++++||... ..|. +.|.++.++|.|.|++||.+... +
T Consensus 14 ~C~~---~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~ 90 (143)
T 2bou_A 14 SCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESE 90 (143)
T ss_dssp EESS---SSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGG
T ss_pred EEcC---CCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCC
Confidence 4554 3899999999853 345789999999854 2686 58999999999999999987643 3
Q ss_pred Cceeeccccc
Q psy17325 106 HTCKAINHSA 115 (461)
Q Consensus 106 ~~C~~~~~~~ 115 (461)
..|.+++++.
T Consensus 91 ~~C~dideC~ 100 (143)
T 2bou_A 91 NTCQDVDECS 100 (143)
T ss_dssp CCEEECCHHH
T ss_pred CCcCCccCcc
Confidence 4788887764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0037 Score=58.64 Aligned_cols=198 Identities=6% Similarity=-0.007 Sum_probs=120.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE--EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR--IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~--~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
.+..+++.+.+..|+ +-...+.|.+.+++.... ...+.........+++.|... .|+... ....|...++...
T Consensus 99 ~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~--~dg~v~~~d~~~~ 173 (337)
T 1gxr_A 99 YIRSCKLLPDGCTLI-VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFSCC--SDGNIAVWDLHNQ 173 (337)
T ss_dssp BEEEEEECTTSSEEE-EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEEEE--TTSCEEEEETTTT
T ss_pred cEEEEEEcCCCCEEE-EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC--EEEEEe--CCCcEEEEeCCCC
Confidence 456677776554454 445568899999876652 222333334578899999766 666665 3467888887754
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
.....+......+..+++.+.+..|+.+.... .|...++......
T Consensus 174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDN-----------------------------------TVRSWDLREGRQL 218 (337)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------------------------------EEEEEETTTTEEE
T ss_pred ceeeeeecccCceEEEEECCCCCEEEEEecCC-----------------------------------cEEEEECCCCceE
Confidence 43333333345678899988766666554332 3555555544333
Q ss_pred EEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 308 ILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 308 ~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
....... +..+++.|.+..|+.+.. .+.|...++.......+. ..-..+..+++.+.+..|+.+
T Consensus 219 ~~~~~~~~v~~~~~s~~~~~l~~~~~-------------~~~i~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~- 283 (337)
T 1gxr_A 219 QQHDFTSQIFSLGYCPTGEWLAVGME-------------SSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVST- 283 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEET-------------TSCEEEEETTSSCEEEEC-CCSSCEEEEEECTTSSEEEEE-
T ss_pred eeecCCCceEEEEECCCCCEEEEEcC-------------CCcEEEEECCCCCeEEEc-CCccceeEEEECCCCCEEEEe-
Confidence 3333222 788899988776665543 345666666655544443 445567889998665555554
Q ss_pred CCCCeEEEEEecCCCCe
Q psy17325 387 SKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 387 ~~~~~I~~~~~~g~g~~ 403 (461)
...+.|...++. ++..
T Consensus 284 ~~dg~i~~~~~~-~~~~ 299 (337)
T 1gxr_A 284 GKDNLLNAWRTP-YGAS 299 (337)
T ss_dssp ETTSEEEEEETT-TCCE
T ss_pred cCCCcEEEEECC-CCeE
Confidence 456789999983 4444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00046 Score=66.93 Aligned_cols=249 Identities=11% Similarity=0.031 Sum_probs=138.3
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCc--eeEEEcCCCCceEEEEee------------------
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQP--RGMMLDPSPGTRWLFWTD------------------ 212 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p--~~ia~d~~~g~~~ly~td------------------ 212 (461)
++++.+.++.|+++.. ...|.+.++++...+.+........ ...++++... .+....
T Consensus 85 ~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKD-GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEF 161 (388)
T ss_dssp SCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ceEEcCCCCEEEEEeC-CCeEEEEECCCCcceeeeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhh
Confidence 4577777888888875 3689999988776655544221111 1123455544 444221
Q ss_pred --cCCCCcEEEEecCCCCcEEEEecccccceeEEeec-cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCC
Q psy17325 213 --WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI-ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGG 289 (461)
Q Consensus 213 --~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~-~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~ 289 (461)
......|++.++.+...+.+... ......+++.+ .+++|.++......
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~---------------------------- 212 (388)
T 3pe7_A 162 YFTKPCCRLMRVDLKTGESTVILQE-NQWLGHPIYRPYDDSTVAFCHEGPHD---------------------------- 212 (388)
T ss_dssp GGGCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCTT----------------------------
T ss_pred hccCCcceEEEEECCCCceEEeecC-CccccccEECCCCCCEEEEEEecCCC----------------------------
Confidence 12336789999887666555443 34567888888 77777665442100
Q ss_pred CCcceeeeEEeCCCCceEEEEeCC--e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCC--ceEEEeecCCCeEEEee
Q psy17325 290 NGVPLKIGKANMDGSNASILVSGQ--L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENP--RIERIGMDGSNRSTIIS 364 (461)
Q Consensus 290 ~~~~~~I~~~~~~g~~~~~l~~~~--~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~--~I~~~~~dG~~~~~l~~ 364 (461)
.....|+..+++|...+.+.... . ...+++.|.+..|++.... .... .|+..++++...+.+..
T Consensus 213 -~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~----------~~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 213 -LVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYL----------KGSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp -TSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEE----------TTCCCEEEEEECTTTCCEEEEEE
T ss_pred -CCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecC----------CCCCcceEEEEecCCCceEEEEc
Confidence 00035777788777666655433 1 4456788877766543221 1122 38888887766555532
Q ss_pred CCC-----CCceeEEEecCCCeEEEEc--------CCCCeEEEEEecCCCCeEEEEEccccceeeccCCCC--CcceEEE
Q psy17325 365 TKI-----YWPNGLTLDIATRRVYFAD--------SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDN--GVPALAL 429 (461)
Q Consensus 365 ~~l-----~~p~glaiD~~~~~ly~~d--------~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 429 (461)
..- ..|.++++.+++++|+++- .....|+.+++ ++.....+........ .+.+.. .....++
T Consensus 282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 358 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM--KNGTQHRVARHDTSWK-VFEGDRQVTHPHPSF 358 (388)
T ss_dssp ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET--TTTEEEEEEECCCCCC-CBTTBSSTTCCCCEE
T ss_pred CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec--cCCceEEeccccCccc-ccccccccCCCCccC
Confidence 111 1266677887888888753 45668999999 4444333332221000 000000 0123466
Q ss_pred eeeCCEEEEEeCCCceee
Q psy17325 430 DLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 430 ~~~~~~lYwtd~~~~~i~ 447 (461)
+.++..||++....+...
T Consensus 359 spDg~~l~~~s~~~g~~~ 376 (388)
T 3pe7_A 359 TPDDKQILFTSDVHGKPA 376 (388)
T ss_dssp CTTSSEEEEEECTTSSCE
T ss_pred CCCCCEEEEEecCCCcee
Confidence 777888998876665443
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-07 Score=79.77 Aligned_cols=76 Identities=28% Similarity=0.751 Sum_probs=59.9
Q ss_pred CCCCcccCCCCCCC--CCce----eCCCCceEeCCCCCeecC-CCCceecC--cceecCCcc---cCceeeccCCccccC
Q psy17325 28 CDLAECKHKFGLCS--NTCH----PTPLGALCTCPPGEILSN-DSVTCQDM--NECEQPGYC---SQMCTNTKGSYICSC 95 (461)
Q Consensus 28 C~~~~C~~~~~~C~--~~C~----~~~~~~~C~C~~G~~l~~-~~~~C~d~--~eC~~~~~C---~~~C~~~~g~~~C~C 95 (461)
|.+++|...+ |. ..|. +..++|.|.|++||.+.. ++..|+++ ++|. ..| .+.|+++.++|.|.|
T Consensus 89 C~~d~C~~~~--C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~--~~C~~~~~~C~n~~g~y~C~C 164 (186)
T 1z1y_A 89 CVLDVCQYXN--CGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ--LXCNTDNEVCXNVEGVYXCQC 164 (186)
T ss_dssp EEEGGGTTCC--CCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC--CCCCTTTEEEEEETTEEEEEE
T ss_pred CCCCcCcCCC--CCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc--ccccccCcceecCCCCeeeEC
Confidence 4567887654 54 4577 788899999999998754 67899986 7896 378 358999999999999
Q ss_pred CCCeeeeCCCCc
Q psy17325 96 NEGYVLEYDNHT 107 (461)
Q Consensus 96 ~~g~~l~~~~~~ 107 (461)
++||........
T Consensus 165 ~~G~~g~~~~~~ 176 (186)
T 1z1y_A 165 MEGFTFDXEXNV 176 (186)
T ss_dssp CTTCEEETTTTE
T ss_pred CCCCccCccccc
Confidence 999988765443
|
| >2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=61.03 Aligned_cols=38 Identities=34% Similarity=0.853 Sum_probs=34.0
Q ss_pred cCCcccCceeecc-CCccccCCCCeeeeCCCCceeeccc
Q psy17325 76 QPGYCSQMCTNTK-GSYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 76 ~~~~C~~~C~~~~-g~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
.++.|+|.|.+++ |+|.|.|++||.|..|+++|.++++
T Consensus 5 ~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~ 43 (59)
T 2wph_E 5 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 43 (59)
T ss_dssp GGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS
T ss_pred CCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC
Confidence 3568999999999 6999999999999999999988654
|
| >3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-06 Score=54.95 Aligned_cols=26 Identities=38% Similarity=1.041 Sum_probs=23.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 12 ~g~Cip~~~~CDg~~DC~dgsDE-~~C 37 (39)
T 3dpr_E 12 STQCIPVSWRCDGENDCDSGEDE-ENC 37 (39)
T ss_dssp SSCCCCTTSSSSSSCCSTTTTTS-TTC
T ss_pred CCCEeCccccCCCcccCcCCccc-ccC
Confidence 37999999999999999999999 455
|
| >1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-06 Score=58.77 Aligned_cols=42 Identities=38% Similarity=0.807 Sum_probs=34.7
Q ss_pred CCCcccCC--------CCCCCCCceeCCCCceEeCCCCCeecCCCCceec
Q psy17325 29 DLAECKHK--------FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 29 ~~~~C~~~--------~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
+++||... +..|.+.|.+++++|.|.|++||.+..++++|.+
T Consensus 3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~ 52 (53)
T 1apq_A 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence 35677653 3578899999999999999999999888888864
|
| >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-06 Score=74.82 Aligned_cols=73 Identities=29% Similarity=0.659 Sum_probs=57.8
Q ss_pred CCCC-CceeCCCCceEeCCCCCeecCCCCceecCcceec---CCccc--Cceeecc-----CCccccCCCCeeeeCCCCc
Q psy17325 39 LCSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQ---PGYCS--QMCTNTK-----GSYICSCNEGYVLEYDNHT 107 (461)
Q Consensus 39 ~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~---~~~C~--~~C~~~~-----g~~~C~C~~g~~l~~~~~~ 107 (461)
.|.+ .|++++++|.|.|++||... ++..|+++++|.. ...|. ..|.++. ++|.|.|++||.... ..
T Consensus 12 pC~ng~C~~~~g~~~C~C~~G~~g~-~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~--~~ 88 (186)
T 1z1y_A 12 ICXNGQLVQMSNHFXCMCNEGLVHL-SENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE--DT 88 (186)
T ss_dssp CCBTEEEEECSSCEEEEECTTEEEE-ETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET--TE
T ss_pred CCCCCEeECCCCCeEeECCCCCccC-CCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC--CC
Confidence 3433 69999999999999999864 4678999999973 45786 4899999 899999999998763 25
Q ss_pred eeeccccc
Q psy17325 108 CKAINHSA 115 (461)
Q Consensus 108 C~~~~~~~ 115 (461)
|. ++++.
T Consensus 89 C~-~d~C~ 95 (186)
T 1z1y_A 89 CV-LDVCQ 95 (186)
T ss_dssp EE-EGGGT
T ss_pred CC-CCcCc
Confidence 64 55554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00045 Score=73.51 Aligned_cols=214 Identities=9% Similarity=0.048 Sum_probs=129.9
Q ss_pred ceeeeeeeecCCeEEEEeCCCC-----eEEEEeCCCCcEEEEecCCCC------------------------CceeEEEc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLN-----RIEVCDENGTNRIVLAKDNIT------------------------QPRGMMLD 200 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~-----~I~~~~~~G~~~~~l~~~~~~------------------------~p~~ia~d 200 (461)
.+..+++.+.++.|+++....+ .|.+.++++.....+...... ....+++.
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4667888888888888877445 899999887665555432111 14678999
Q ss_pred CCCCceEEEEeecCCCCcEEEEecCCC---CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccce
Q psy17325 201 PSPGTRWLFWTDWGENPRIERIGMDGS---NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST 277 (461)
Q Consensus 201 ~~~g~~~ly~td~~~~~~I~~~~~dG~---~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~ 277 (461)
|... +|+++. . ..|+..++++. ....+.. .-..+..+++.+.+++|+++...
T Consensus 118 pDg~--~l~~~~-~--~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~~------------------- 172 (741)
T 2ecf_A 118 PDAQ--RLLFPL-G--GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRGR------------------- 172 (741)
T ss_dssp TTSS--EEEEEE-T--TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEETT-------------------
T ss_pred CCCC--EEEEEe-C--CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeCC-------------------
Confidence 9866 888876 2 68999999876 4433332 23457789999988888877532
Q ss_pred eeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe------------------eeeEEEeccCCeEEEeecCce----
Q psy17325 278 IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL------------------YEALALDLENGMLYYSTLKCT---- 335 (461)
Q Consensus 278 ~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~------------------p~~iavd~~~~~lY~t~~~~~---- 335 (461)
.|++.++++.....+..... +.++++.|.+..|+++.....
T Consensus 173 -----------------~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~ 235 (741)
T 2ecf_A 173 -----------------NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV 235 (741)
T ss_dssp -----------------EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE
T ss_pred -----------------cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce
Confidence 24444554433322221111 367899998888888643210
Q ss_pred -------------eeEEEeecCCC---CceEEEeecC-CCeEEEeeC--CCCCceeEEEecCCCeEEEEcC----CCCeE
Q psy17325 336 -------------RWLFWTDWGEN---PRIERIGMDG-SNRSTIIST--KIYWPNGLTLDIATRRVYFADS----KLDFI 392 (461)
Q Consensus 336 -------------~~l~~~d~~~~---~~I~~~~~dG-~~~~~l~~~--~l~~p~glaiD~~~~~ly~~d~----~~~~I 392 (461)
..+.|...+.. .+|+..++++ .....+... .-..+..+++ +++.+|+++.. ....|
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEE
T ss_pred EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEE
Confidence 01111111111 1566667766 554444311 2334677899 88888987643 24578
Q ss_pred EEEEecCCCCeEEEE
Q psy17325 393 DFCNYDGTGRQQVIL 407 (461)
Q Consensus 393 ~~~~~~g~g~~~~~~ 407 (461)
..+++. +|..+.++
T Consensus 315 ~~~d~~-~g~~~~~~ 328 (741)
T 2ecf_A 315 VEVTLA-SNQQRVLA 328 (741)
T ss_dssp EEEETT-TCCEEEEE
T ss_pred EEEECC-CCceEEEE
Confidence 888883 45554443
|
| >1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.8e-07 Score=58.32 Aligned_cols=26 Identities=42% Similarity=0.955 Sum_probs=23.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 21 ~g~CIp~~~~CDG~~DC~DgSDE-~~C 46 (47)
T 1k7b_A 21 HGECYPQDWLCDGHPDCDDGRDE-WGC 46 (47)
T ss_dssp CCCCEEGGGSSCSSCCSSSSTTT-GGG
T ss_pred CCcCCCccccCCCcCCCCCCccc-CCC
Confidence 57999999999999999999999 445
|
| >1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-06 Score=54.99 Aligned_cols=26 Identities=35% Similarity=0.905 Sum_probs=23.4
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 11 ~g~Ci~~~~~CDg~~DC~DgsDE-~~C 36 (37)
T 1ajj_A 11 SGECIHSSWRCDGGPDCKDKSDE-ENC 36 (37)
T ss_dssp TSCEECGGGTTSSSCCSTTCGGG-TTC
T ss_pred CCCeechhhccCCCCCCCCCccc-cCC
Confidence 57899999999999999999999 444
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-06 Score=64.27 Aligned_cols=40 Identities=28% Similarity=0.674 Sum_probs=31.9
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccC-CCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKH-KFGLCS 41 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~~~~C~~-~~~~C~ 41 (461)
+++||+.+|+|||..||.||+||...|....|.+ ..+.|.
T Consensus 14 ~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~ 54 (82)
T 2fyj_A 14 SGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCN 54 (82)
T ss_dssp SSCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECT
T ss_pred CCCEEeccccCCCcccCCCccccccccccccCCCCCceECC
Confidence 5789999999999999999999955676556743 555564
|
| >1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-06 Score=55.47 Aligned_cols=26 Identities=42% Similarity=0.929 Sum_probs=23.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 14 ~g~CI~~~~~CDg~~DC~DgSDE-~~C 39 (42)
T 1cr8_A 14 DGLCIPLRWRCDGDTDCMDSSDE-KSC 39 (42)
T ss_dssp TCCEECGGGSSSSSCCSSSSTTT-TTC
T ss_pred CCeEcChhhcCCCCcCCCCCCcc-cCC
Confidence 47899999999999999999999 455
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00068 Score=71.13 Aligned_cols=205 Identities=11% Similarity=0.060 Sum_probs=119.0
Q ss_pred ecCCe-EEEEeCCCCeEEEEeCC--C-CcEEEEecC----CCCCceeEEEcCCCCceEEEEeecC--------CCCcEEE
Q psy17325 158 WIGGH-IYWLDSRLNRIEVCDEN--G-TNRIVLAKD----NITQPRGMMLDPSPGTRWLFWTDWG--------ENPRIER 221 (461)
Q Consensus 158 ~~~~~-ly~~d~~~~~I~~~~~~--G-~~~~~l~~~----~~~~p~~ia~d~~~g~~~ly~td~~--------~~~~I~~ 221 (461)
+.++. |+++.....+|.+.+++ | .....+... ....+.++++.|... .|+++... ....|++
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTCEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCCceeEEEE
Confidence 34677 88888778899999988 4 444444331 123467889999866 78776522 1158999
Q ss_pred EecCC------CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCccee
Q psy17325 222 IGMDG------SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLK 295 (461)
Q Consensus 222 ~~~dG------~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~ 295 (461)
.++++ ...+.+..........+++.+.+++|+|+........ +.. ..
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~-----------------------~~~----~~ 218 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP-----------------------WEG----TE 218 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT-----------------------TTC----EE
T ss_pred EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCC-----------------------CCC----cE
Confidence 99988 4444443022345667888888888988763321000 000 25
Q ss_pred eeEEeCCC-C---ceEEEEeC-Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCC--C
Q psy17325 296 IGKANMDG-S---NASILVSG-QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK--I 367 (461)
Q Consensus 296 I~~~~~~g-~---~~~~l~~~-~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~--l 367 (461)
|++.++++ . ..+.+... .. +..++..|.+. ||++... ....+|++.++++...+.+.... .
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~----------~~~~~l~~~~~~~~~~~~l~~~~~~~ 287 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDR----------TGWWNLHRVDPATGAATQLCRREEEF 287 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECT----------TSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECC----------CCCeEEEEEECCCCceeecccccccc
Confidence 77777774 2 33344432 22 77888888766 5554332 12337888887665555444221 1
Q ss_pred CC------ceeEEEecCCCeEEEE-cCCCCeEEEEEecCCCCeEE
Q psy17325 368 YW------PNGLTLDIATRRVYFA-DSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 368 ~~------p~glaiD~~~~~ly~~-d~~~~~I~~~~~~g~g~~~~ 405 (461)
.. ...+++.+ +++++++ ..+..+|+.+++ ++....
T Consensus 288 ~~p~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~--~~~~~~ 329 (662)
T 3azo_A 288 AGPLWTPGMRWFAPLA-NGLIAVVHGKGAAVLGILDP--ESGELV 329 (662)
T ss_dssp SCCCCSTTCCSEEECT-TSCEEEEEBSSSCEEEEEET--TTTEEE
T ss_pred cCccccccCceEeEeC-CCEEEEEEEcCccEEEEEEC--CCCcEE
Confidence 11 24566643 4555554 325557788887 444433
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0016 Score=62.98 Aligned_cols=224 Identities=9% Similarity=0.044 Sum_probs=121.4
Q ss_pred eeeeecCCeEEEEeCCCC--eEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 154 LAYDWIGGHIYWLDSRLN--RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 154 iavd~~~~~ly~~d~~~~--~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
.++.+.++.|+++....+ +|.+.++++.....+.........++++.|... .|+++. . ...|++.++++...+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~--~l~~~~-~-~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD--ALFYVK-D-GRNLMRVDLATLEENV 116 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS--EEEEEE-T-TTEEEEEETTTCCEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC--EEEEEe-C-CCeEEEEECCCCccee
Confidence 345555666666655333 689999888776666543322233678999876 888887 2 3589999998766555
Q ss_pred EEecccccc--eeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 232 IISTKIYWP--NGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 232 i~~~~~~~P--~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
+........ ...++++....|............ +.+...+.+....+....|++.++.+...+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 183 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVP-------------LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI 183 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-------------CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred eeechhhcccccceeECCCCCeeccccccCccccc-------------ccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence 543221111 112335544444322110000000 00000000000000004578888876666666
Q ss_pred EeCCe-eeeEEEec-cCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCCC-CCceeEEEecCCCeEEEE
Q psy17325 310 VSGQL-YEALALDL-ENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKI-YWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 310 ~~~~~-p~~iavd~-~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l-~~p~glaiD~~~~~ly~~ 385 (461)
..... ...+++.| .++.|.++... .+. ...+|+..+.+|...+.+....- .....+++.+++++|+++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~--------~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEG--------PHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECS--------CTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred ecCCccccccEECCCCCCEEEEEEec--------CCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence 54433 67888998 77766554322 011 14578888888887766653221 134567888888878554
Q ss_pred -cCCCC---eEEEEEecCCCCe
Q psy17325 386 -DSKLD---FIDFCNYDGTGRQ 403 (461)
Q Consensus 386 -d~~~~---~I~~~~~~g~g~~ 403 (461)
+.... .|+.++++ +|..
T Consensus 256 ~~~~~~~~~~l~~~d~~-~g~~ 276 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPE-TLEN 276 (388)
T ss_dssp EEETTCCCEEEEEECTT-TCCE
T ss_pred ecCCCCCcceEEEEecC-CCce
Confidence 33222 39999983 3443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0015 Score=64.83 Aligned_cols=199 Identities=5% Similarity=0.011 Sum_probs=122.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCC-----------CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENG-----------TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPR 218 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G-----------~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~ 218 (461)
.+..+++.+.+++++.+-...+.|.+.++.. .....+. ..-..+.+|++.|... .++.+- .....
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~--~~l~s~-~~dg~ 205 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLN--GYLLSA-SDDHT 205 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTST--TEEEEE-CTTSC
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCC--CeEEEE-eCCCe
Confidence 4667788775567888888889999998763 2222222 2334578999998744 355554 34567
Q ss_pred EEEEecCCCCc--E-----EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCC
Q psy17325 219 IERIGMDGSNR--S-----TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNG 291 (461)
Q Consensus 219 I~~~~~dG~~~--~-----~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~ 291 (461)
|...++..... . ............+++.+.++.++.+....+.
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~------------------------------ 255 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK------------------------------ 255 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE------------------------------
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe------------------------------
Confidence 87777765211 1 1122223457788888767777776655533
Q ss_pred cceeeeEEeCCCC----ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEeeC
Q psy17325 292 VPLKIGKANMDGS----NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTIIST 365 (461)
Q Consensus 292 ~~~~I~~~~~~g~----~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~~~ 365 (461)
|...++... ....+..... ++.|++.|.+..++++-.. .+.|...++.. ......+..
T Consensus 256 ----i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~------------dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 256 ----LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA------------DKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp ----EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEET------------TSEEEEEETTCTTSCSEEEEC
T ss_pred ----EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeC------------CCeEEEEeCCCCCCCeEEeec
Confidence 444444422 2222222222 8899999988877776555 45565555543 222222224
Q ss_pred CCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 366 KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 366 ~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.-.....|++.+.++.++.+-...+.|...++.
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 455678899988777888887777888888884
|
| >3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.3e-06 Score=55.54 Aligned_cols=26 Identities=35% Similarity=0.822 Sum_probs=23.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+..|+|||..||.||+|| ..|
T Consensus 17 ~g~CI~~~~~CDg~~DC~DgSDE-~~C 42 (44)
T 3a7q_B 17 NERCIPSVWRCDEDDDCLDHSDE-DDC 42 (44)
T ss_dssp TSCEEEGGGTTSSSCCSSSSTTT-SCC
T ss_pred CCCEeChhhccCCCCCCCCCccc-cCC
Confidence 57899999999999999999999 455
|
| >1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.6e-06 Score=57.26 Aligned_cols=26 Identities=42% Similarity=0.955 Sum_probs=23.4
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 19 ~~~CIp~~~~CDG~~DC~DgSDE-~~C 44 (47)
T 1jrf_A 19 HGECYPQDWLCDGHPDCDDGRDE-WGC 44 (47)
T ss_dssp CTTTSGGGGSSSSSCCSSSSCTT-HHH
T ss_pred CCeEcCHhhcCCCCcCCCCCccc-ccC
Confidence 57899999999999999999999 444
|
| >1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-06 Score=54.97 Aligned_cols=24 Identities=38% Similarity=0.864 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+|+|||..||.|||||.
T Consensus 15 ~g~CI~~~~~CDG~~DC~DgSDE~ 38 (45)
T 1d2l_A 15 NSRCIQERWKCDGDNDCLDNSDEA 38 (45)
T ss_dssp TTEEECGGGTTTSSCTTTTCSTTS
T ss_pred CCCeEehhhccCCCCCCCCCCCCC
Confidence 578999999999999999999994
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0042 Score=59.67 Aligned_cols=233 Identities=11% Similarity=-0.025 Sum_probs=123.7
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-EEEE---ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-RIVL---AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-~~~l---~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
...+++.+ +..+++-..++.|.+.+++... ..++ ..+.-.....|++.|... +|.-.. ....|...++..
T Consensus 85 v~~~~~s~--d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs--~d~~i~iwd~~~ 158 (344)
T 4gqb_B 85 VADLTWVG--ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGS--KDICIKVWDLAQ 158 (344)
T ss_dssp EEEEEEET--TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEE--TTSCEEEEETTT
T ss_pred EEEEEEeC--CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEe--CCCeEEEEECCC
Confidence 34455553 3344566678899999876433 2221 223334578899998755 555544 345777777764
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN- 305 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~- 305 (461)
......+.........+++.+.+..++.+-...+ .|...++....
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~----------------------------------~v~iwd~~~~~~ 204 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN----------------------------------RILLWDTRCPKP 204 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTS----------------------------------CEEEEETTSSSC
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeecccc----------------------------------ccccccccccce
Confidence 3322222223345677888877666666544332 24444443222
Q ss_pred eEEEEeC--C-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 306 ASILVSG--Q-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 306 ~~~l~~~--~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
...+... . .+..+++.|.+++++.+-.. .+.|...++. ++....+. ..-.....|++.+.+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~------------dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~ 271 (344)
T 4gqb_B 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE------------NGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVP 271 (344)
T ss_dssp EEECC----CCCEEEEEECSSCTTEEEEEET------------TSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSC
T ss_pred eeeeecceeeccceeeeecCCCCcceEEecc------------CCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCe
Confidence 2222111 1 16788888888877766444 3445444443 23333333 44455678888766666
Q ss_pred EEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 382 VYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
+..+-...+.|...++ .......+ ...... ...+++.+++..|..|-...++|++
T Consensus 272 ~lasgs~D~~i~vwd~--~~~~~~~~-~~H~~~---------V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 272 FLASLSEDCSLAVLDS--SLSELFRS-QAHRDF---------VRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CEEEEETTSCEEEECT--TCCEEEEE-CCCSSC---------EEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEEeCCCeEEEEEC--CCCcEEEE-cCCCCC---------EEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 6555455677888787 33332222 111111 1123333456667777666666643
|
| >2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-06 Score=56.83 Aligned_cols=26 Identities=42% Similarity=0.822 Sum_probs=23.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+||. .|
T Consensus 17 ~g~CI~~~~~CDG~~DC~DgSDE~-~C 42 (50)
T 2knx_A 17 THVCVPERWLCDGDKDCADGADES-IA 42 (50)
T ss_dssp TTEEEETTTTTSSSCCSTTCGGGS-GG
T ss_pred CCeEcChhhcCCCCCCCCCCCccc-cc
Confidence 578999999999999999999994 45
|
| >2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-06 Score=54.69 Aligned_cols=25 Identities=40% Similarity=0.880 Sum_probs=22.9
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 3 DRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 3 ~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
++||+.+|+|||..||.||+|| ..|
T Consensus 18 g~CI~~~~~CDg~~DC~DgSDE-~~C 42 (43)
T 2jm4_A 18 TKCLPQLLHCNGVDDCGNQADE-DNC 42 (43)
T ss_dssp SCEEEGGGTTSSCCCSSSCCTT-SSC
T ss_pred CeEcCHhhccCCCCCCCCCccc-CCC
Confidence 7899999999999999999999 445
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.002 Score=68.14 Aligned_cols=203 Identities=10% Similarity=0.124 Sum_probs=116.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCC-----CcEEEEecCCCC--------------CceeEEEcCCCCceEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENG-----TNRIVLAKDNIT--------------QPRGMMLDPSPGTRWLFW 210 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G-----~~~~~l~~~~~~--------------~p~~ia~d~~~g~~~ly~ 210 (461)
.+..+++.+.++.|+++. .+.|.+.++++ .....+...... .+.++++.|... +|++
T Consensus 122 ~~~~~~~SpdG~~la~~~--~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~--~la~ 197 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVR--NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS--CLAF 197 (706)
T ss_dssp CCTTCEECTTSSEEEEEE--TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS--EEEE
T ss_pred cccCCcCCCCCCEEEEEE--CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC--EEEE
Confidence 455677887777777763 47899999876 444443332211 257899999866 7777
Q ss_pred eecC-------------------------------CCCcEEEEecCCCCcEEEEec--ccccceeEEeeccCCeeEEecC
Q psy17325 211 TDWG-------------------------------ENPRIERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 211 td~~-------------------------------~~~~I~~~~~dG~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~ 257 (461)
+... ....|+..++++.....+... .-..+..+++.+.++.|+++..
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe
Confidence 6421 124566777665433222211 1124566777777777776432
Q ss_pred CCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-ceEEEEeCCe------eeeEEEec--cCCeEE
Q psy17325 258 KLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-NASILVSGQL------YEALALDL--ENGMLY 328 (461)
Q Consensus 258 ~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-~~~~l~~~~~------p~~iavd~--~~~~lY 328 (461)
....- ...|...++++. ..+.+..... ...+++.| .++.||
T Consensus 278 ~~~~~------------------------------~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 278 NRAQN------------------------------ECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp CTTSC------------------------------EEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred CCCCC------------------------------eeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 21100 024666776655 4444432111 25677777 554443
Q ss_pred EeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCcee-EEEecCCCeEEEEcCCCC----eEEEEEec
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG-LTLDIATRRVYFADSKLD----FIDFCNYD 398 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~g-laiD~~~~~ly~~d~~~~----~I~~~~~~ 398 (461)
.++. ....+|+..+.+|...+.+. ..-..... +++++++++||++....+ .|++++++
T Consensus 328 ~~~~-----------~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 328 QSRR-----------DGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EECT-----------TSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred EEcc-----------CCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 3322 22456777777776555554 22222334 789988889998866544 88999883
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.01 Score=60.69 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=123.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+.++++.+.+..|. +-...+.|.+.+.++.....+... -..+.+|++.|... +|.... ....|...+.++...
T Consensus 346 ~v~~~~~s~~g~~l~-~~~~dg~v~~~~~~~~~~~~~~~~-~~~v~~~~~s~dg~--~l~~~~--~d~~v~~~~~~~~~~ 419 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQLLQTLTGH-SSSVRGVAFSPDGQ--TIASAS--DDKTVKLWNRNGQLL 419 (577)
T ss_dssp CEEEEEECTTSSEEE-EEETTSEEEEEETTCCEEEEEECC-SSCEEEEEECTTSS--CEEEEE--TTSEEEEECTTCCEE
T ss_pred CEEEEEECCCCCEEE-EEeCCCEEEEEcCCCCEEEEecCC-CCCeEEEEECCCCC--EEEEEe--CCCEEEEEeCCCCEE
Confidence 345677776554444 444568899999888776665433 25688999998755 666554 345677777776544
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
..+. ..-....+|++.+.++.|..+.... .|...++++.....+
T Consensus 420 ~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~-----------------------------------~v~~w~~~~~~~~~~ 463 (577)
T 2ymu_A 420 QTLT-GHSSSVWGVAFSPDDQTIASASDDK-----------------------------------TVKLWNRNGQLLQTL 463 (577)
T ss_dssp EEEE-CCSSCEEEEEECTTSSEEEEEETTS-----------------------------------EEEEEETTSCEEEEE
T ss_pred EEec-CCCCCeEEEEECCCCCEEEEEcCCC-----------------------------------EEEEEECCCCEEEEE
Confidence 4332 2234567888988776666554332 355556666655555
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
..... +..+++.|.+..|..+.. .+.|...+.+|.....+. ..-.....|++.+++..|..+. .
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~-------------d~~i~iw~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~-~ 528 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASD-------------DKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASAS-D 528 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEET-------------TSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSSCEEEEE-T
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeC-------------CCEEEEEcCCCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEE-C
Confidence 43333 788999987665554332 344555556666555554 4455678899987666666553 4
Q ss_pred CCeEEEEEecCCCCeEEEE
Q psy17325 389 LDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 389 ~~~I~~~~~~g~g~~~~~~ 407 (461)
.+.|...+. +|.....+
T Consensus 529 dg~v~lwd~--~~~~~~~~ 545 (577)
T 2ymu_A 529 DKTVKLWNR--NGQLLQTL 545 (577)
T ss_dssp TSEEEEECT--TSCEEEEE
T ss_pred cCEEEEEeC--CCCEEEEE
Confidence 567888887 67654444
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0057 Score=57.56 Aligned_cols=209 Identities=16% Similarity=0.213 Sum_probs=118.7
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccc
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~ 239 (461)
.++||+.. ..+.|.+.+.+|...-..... ......+++|+. | .||+.. ....|++.+.+|...... ......
T Consensus 107 ~~~l~v~t-~~~~l~~~d~~g~~~~~~~~~-~~~~~~~~~~~~-g--~l~vgt--~~~~l~~~d~~g~~~~~~-~~~~~~ 178 (330)
T 3hxj_A 107 EDILYVTS-MDGHLYAINTDGTEKWRFKTK-KAIYATPIVSED-G--TIYVGS--NDNYLYAINPDGTEKWRF-KTNDAI 178 (330)
T ss_dssp TTEEEEEC-TTSEEEEECTTSCEEEEEECS-SCCCSCCEECTT-S--CEEEEC--TTSEEEEECTTSCEEEEE-ECSSCC
T ss_pred CCEEEEEe-cCCEEEEEcCCCCEEEEEcCC-CceeeeeEEcCC-C--EEEEEc--CCCEEEEECCCCCEeEEE-ecCCCc
Confidence 67777654 457899999886654333222 123456778764 4 577765 336899988885433222 222234
Q ss_pred ceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeE
Q psy17325 240 PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEAL 318 (461)
Q Consensus 240 P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~i 318 (461)
...+++|. .++||++. . .|.+.+.+|........... +..+
T Consensus 179 ~~~~~~d~-~g~l~v~t--~-----------------------------------~l~~~d~~g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 179 TSAASIGK-DGTIYFGS--D-----------------------------------KVYAINPDGTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp CSCCEECT-TCCEEEES--S-----------------------------------SEEEECTTSCEEEEECCSSCCCSCC
T ss_pred eeeeEEcC-CCEEEEEe--C-----------------------------------EEEEECCCCcEEEEEccCCcceece
Confidence 55677774 67788877 2 14555544443322222112 6778
Q ss_pred EEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 319 ALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 319 avd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
++|+ +|.||++... +.|.+.+.+|.....+. ..-..+..+++| .+++||++.. .+.|.+++.
T Consensus 221 ~~~~-~g~l~v~t~~-------------~gl~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~g~l~v~t~-~ggl~~~d~- 282 (330)
T 3hxj_A 221 AISE-DGTIYVTSLD-------------GHLYAINPDGTEKWRFK-TGKRIESSPVIG-NTDTIYFGSY-DGHLYAINP- 282 (330)
T ss_dssp EECT-TSCEEEEETT-------------TEEEEECTTSCEEEEEE-CSSCCCSCCEEC-TTSCEEEECT-TCEEEEECT-
T ss_pred EECC-CCeEEEEcCC-------------CeEEEECCCCCEeEEee-CCCCccccceEc-CCCeEEEecC-CCCEEEECC-
Confidence 8885 5678887542 35666655554443332 223335567786 6789998854 457888887
Q ss_pred CCCCeEEEEEccccceeeccCCCCCcceEEEee-eCCEEEEEeCCCcee
Q psy17325 399 GTGRQQVILIDLMVEFTNDLMGDNGVPALALDL-ENGMLYYSTEGAEFL 446 (461)
Q Consensus 399 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~lYwtd~~~~~i 446 (461)
+|......... .. ...++.. .++.||+...+ +.+
T Consensus 283 -~g~~~~~~~~~--~~----------~~~~~~~d~~g~l~~gt~~-G~~ 317 (330)
T 3hxj_A 283 -DGTEKWNFETG--SW----------IIATPVIDENGTIYFGTRN-GKF 317 (330)
T ss_dssp -TSCEEEEEECS--SC----------CCSCCEECTTCCEEEECTT-SCE
T ss_pred -CCcEEEEEEcC--Cc----------cccceEEcCCCEEEEEcCC-CeE
Confidence 67654332211 11 1224444 56788887644 444
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.014 Score=54.59 Aligned_cols=192 Identities=9% Similarity=0.019 Sum_probs=110.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE----EEEe-cCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR----IVLA-KDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~----~~l~-~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.+..+++.+.+..|+... .+.|.+.+++.... ..+. ...-.....+++.|... +|+... ....|...++
T Consensus 53 ~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~--~d~~i~~~d~ 126 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGG--EASTLSIWDL 126 (337)
T ss_dssp CCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEE--SSSEEEEEEC
T ss_pred ceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEc--CCCcEEEEEC
Confidence 345677776555555443 78999999765321 1111 12334578899999765 666654 3467888888
Q ss_pred CCCCcEE--EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 225 DGSNRST--IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 225 dG~~~~~--i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
....... ...........+++.+.++.|+.+.... .|...++.
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------~v~~~d~~ 171 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG-----------------------------------NIAVWDLH 171 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS-----------------------------------CEEEEETT
T ss_pred CCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC-----------------------------------cEEEEeCC
Confidence 7654222 2223334567888888666666655432 35555554
Q ss_pred CCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC
Q psy17325 303 GSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 380 (461)
Q Consensus 303 g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~ 380 (461)
.......+.... +..++++|.+..|+.+.. .+.|...++......... ..-..+..+++.+.+.
T Consensus 172 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-------------DNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGE 237 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------------TSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSS
T ss_pred CCceeeeeecccCceEEEEECCCCCEEEEEec-------------CCcEEEEECCCCceEeee-cCCCceEEEEECCCCC
Confidence 443332332222 788999987666665433 344555555433322222 2334567888886666
Q ss_pred eEEEEcCCCCeEEEEEe
Q psy17325 381 RVYFADSKLDFIDFCNY 397 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~ 397 (461)
.|+.+. ..+.|...++
T Consensus 238 ~l~~~~-~~~~i~~~~~ 253 (337)
T 1gxr_A 238 WLAVGM-ESSNVEVLHV 253 (337)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEc-CCCcEEEEEC
Confidence 666654 4567888888
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.011 Score=58.81 Aligned_cols=240 Identities=8% Similarity=0.051 Sum_probs=127.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC---CCcEEEEec-CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN---GTNRIVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~---G~~~~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+.++++.+.+..|+++-...+.|.+.++. |.....+.. .....+.+|++.|... +|+.++ ....|+..++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~--~~g~v~~~~~~ 179 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT--TVIIAD--KFGDVYSIDIN 179 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC--EEEEEe--CCCcEEEEecC
Confidence 467788888777777887778999999876 444444321 2224578999999866 888776 24578887775
Q ss_pred CCCcEE----EEecccccceeEEeecc---CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 226 GSNRST----IISTKIYWPNGLTLDIA---TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 226 G~~~~~----i~~~~~~~P~glavD~~---~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
...... .+.........|++.+. +..|+.+.... .|..
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-----------------------------------~i~v 224 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-----------------------------------HIKI 224 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-----------------------------------CEEE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-----------------------------------cEEE
Confidence 433211 11222345778888876 44555444332 3444
Q ss_pred EeCCC-CceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeE----------EE-e-
Q psy17325 299 ANMDG-SNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRS----------TI-I- 363 (461)
Q Consensus 299 ~~~~g-~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~----------~l-~- 363 (461)
.++.. .....+..... +..+++. .+..|+..... .....| |......+........... .+ .
T Consensus 225 wd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d-~~v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 225 SHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD-DKIFAW-DWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp EEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS-SEEEEE-ETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred EECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC-CeEEEE-ECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence 44443 32333232222 7888888 55555544322 222223 2222222222211100000 00 0
Q ss_pred --eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe-cCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEe
Q psy17325 364 --STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY-DGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYST 440 (461)
Q Consensus 364 --~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd 440 (461)
...-....+|++.+.+..||.+-...+.|...++ +.++.....+...... ..+.++++..+.++++-
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~----------~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP----------YNVISLSAHNDEFQVTL 371 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS----------SCEEEEEEETTEEEEEE
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC----------CceEEEEecCCcEEEEE
Confidence 0111235678888778888888766788888888 2233221211111101 12566777666666664
Q ss_pred C
Q psy17325 441 E 441 (461)
Q Consensus 441 ~ 441 (461)
.
T Consensus 372 ~ 372 (450)
T 2vdu_B 372 D 372 (450)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0015 Score=68.55 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=118.0
Q ss_pred eeeeeeeecCCeEEEEeC--C-CC--eEEEEeCCCCcEEEEecCCCCCce---------eEEEc--CCCCceE-EEEeec
Q psy17325 151 VEGLAYDWIGGHIYWLDS--R-LN--RIEVCDENGTNRIVLAKDNITQPR---------GMMLD--PSPGTRW-LFWTDW 213 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~-~~--~I~~~~~~G~~~~~l~~~~~~~p~---------~ia~d--~~~g~~~-ly~td~ 213 (461)
...++++ .+.+||+.. . .+ .|.+. ..+...+.+.... ...+ ..+.. |..+ + |+++.
T Consensus 26 ~~~~~~s--~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~--~~la~~~- 98 (662)
T 3azo_A 26 PACVGAV--GDEVWWVAPRPAEAGRATLVRR-RADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGG--PLLVFTH- 98 (662)
T ss_dssp CEEEEEE--TTEEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSS--CEEEEEB-
T ss_pred cceeEEc--CCeEEEEecCcccCCcEEEEEE-CCCCCcceeCCCC-ccccccccccCCccceeeeecCCC--eEEEEEE-
Confidence 4455665 556777654 2 22 35554 3333344443322 1222 34343 6655 7 77776
Q ss_pred CCCCcEEEEecC--C-CCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 214 GENPRIERIGMD--G-SNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 214 ~~~~~I~~~~~d--G-~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
....+|+.++++ | .....+... ....+.++++.+.+++|+++......
T Consensus 99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~------------------------- 153 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG------------------------- 153 (662)
T ss_dssp TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS-------------------------
T ss_pred CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccC-------------------------
Confidence 335789999998 5 554444331 13356789999989999887643100
Q ss_pred cCCCCcceeeeEEeCCC------CceEEEE-eCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-
Q psy17325 287 EGGNGVPLKIGKANMDG------SNASILV-SGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS- 357 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g------~~~~~l~-~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~- 357 (461)
.........|++.++++ ...+.+. .... ...+++.|.++.|+|+...... + .| ....|+..+++++
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~-~---~~-~~~~i~~~d~~~~g 228 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR-M---PW-EGTELKTARVTEDG 228 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTC-C---TT-TCEEEEEEEECTTS
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCC-C---CC-CCcEEEEEEECCCC
Confidence 00000003578888887 5555554 3222 6778899988888776532000 0 00 1357888888742
Q ss_pred ---CeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC--eEEEEEe
Q psy17325 358 ---NRSTIISTKIYWPNGLTLDIATRRVYFADSKLD--FIDFCNY 397 (461)
Q Consensus 358 ---~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~--~I~~~~~ 397 (461)
..+.+....-..+..+++.+++. ||++....+ .|+++++
T Consensus 229 ~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 229 RFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp CEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECT
T ss_pred cccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEEC
Confidence 33444423345677888876655 666644444 8888887
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
Probab=97.85 E-value=1.7e-06 Score=64.18 Aligned_cols=39 Identities=31% Similarity=0.757 Sum_probs=31.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCS 41 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~~~~C~~~~~~C~ 41 (461)
+++||+.+|+|||..||.||+|| ..|....|....+.|.
T Consensus 12 ~g~CI~~~~~CDg~~DC~DgSDE-~~C~~~~C~~~~f~C~ 50 (80)
T 2fcw_B 12 DGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCN 50 (80)
T ss_dssp TSCEEEGGGTTSSSCCSTTCTTT-TTHHHHHCCTTEEECT
T ss_pred CCCEEeeecccCCcccCCCcccc-cccccccCCceeeECC
Confidence 57999999999999999999999 5675445666566664
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.019 Score=58.63 Aligned_cols=199 Identities=13% Similarity=0.113 Sum_probs=122.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+.++++.+.+ ....+-...+.|.+.++++.....+.. .-..+.++++.|... .|.... ....|...+.++...
T Consensus 305 ~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~~~~~~-~~~~v~~~~~s~~g~--~l~~~~--~dg~v~~~~~~~~~~ 378 (577)
T 2ymu_A 305 SVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHLQTLTG-HSSSVWGVAFSPDGQ--TIASAS--DDKTVKLWNRNGQLL 378 (577)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEECC-CSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETTCCEE
T ss_pred CeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeeEEEeC-CCCCEEEEEECCCCC--EEEEEe--CCCEEEEEcCCCCEE
Confidence 34567776544 444555567889999998877655543 235578899999855 665544 345677777776544
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
..+. ..-..+.+|++.+.++.|..+.... .|...+.++.....+
T Consensus 379 ~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~-----------------------------------~v~~~~~~~~~~~~~ 422 (577)
T 2ymu_A 379 QTLT-GHSSSVRGVAFSPDGQTIASASDDK-----------------------------------TVKLWNRNGQLLQTL 422 (577)
T ss_dssp EEEE-CCSSCEEEEEECTTSSCEEEEETTS-----------------------------------EEEEECTTCCEEEEE
T ss_pred EEec-CCCCCeEEEEECCCCCEEEEEeCCC-----------------------------------EEEEEeCCCCEEEEe
Confidence 4332 2334577899988776666554332 355555666555544
Q ss_pred EeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 310 VSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 310 ~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
..... ..++++.|.+..|..+.. .+.|...++++.....+. ..-.....|++.+++..|..+ ..
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~~-------------d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~spd~~~las~-~~ 487 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASASD-------------DKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASA-SD 487 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEET-------------TSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSCEEEEE-ET
T ss_pred cCCCCCeEEEEECCCCCEEEEEcC-------------CCEEEEEECCCCEEEEEc-CCCCCEEEEEEcCCCCEEEEE-eC
Confidence 43333 778999987776654433 334544555665555544 444567789998665555544 44
Q ss_pred CCeEEEEEecCCCCeEEEE
Q psy17325 389 LDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 389 ~~~I~~~~~~g~g~~~~~~ 407 (461)
.+.|...+. +|.....+
T Consensus 488 d~~i~iw~~--~~~~~~~~ 504 (577)
T 2ymu_A 488 DKTVKLWNR--NGQLLQTL 504 (577)
T ss_dssp TSEEEEEET--TSCEEEEE
T ss_pred CCEEEEEcC--CCCEEEEE
Confidence 567877777 66655444
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0021 Score=68.28 Aligned_cols=261 Identities=10% Similarity=0.091 Sum_probs=138.1
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCC---cEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGT---NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~---~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
+..+++.+.++.|+++.. +.|.+.++++. ....+... -..+..+++.|... +|.++. . ..|+..++++.
T Consensus 111 v~~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPDG~--~la~~~-~--~~i~~~d~~~g 182 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPKGG--FVSFIR-G--RNLWVIDLASG 182 (741)
T ss_dssp SCCCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTTSS--EEEEEE-T--TEEEEEETTTT
T ss_pred cceeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC-CcccccccCCCCCC--EEEEEe-C--CcEEEEecCCC
Confidence 456788888888888776 89999998876 44444332 24578899999866 777665 2 37999988875
Q ss_pred CcEEEEeccc----------------ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCC
Q psy17325 228 NRSTIISTKI----------------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNG 291 (461)
Q Consensus 228 ~~~~i~~~~~----------------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~ 291 (461)
....+..... ..+.++++.+.+++|+++.............. ..........+.|...+...
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~--~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE--VYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE--ECSSCEEEEEEECCBTTSCC
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC--CCCCcccceEeecCCCCCCC
Confidence 4433322211 12577899998888888743221100000000 00000000001111111100
Q ss_pred cceeeeEEeCCC-CceEEEEeC---Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeC-
Q psy17325 292 VPLKIGKANMDG-SNASILVSG---QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIST- 365 (461)
Q Consensus 292 ~~~~I~~~~~~g-~~~~~l~~~---~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~- 365 (461)
-...|.+.++++ .....+... .. +..+++ |.+..|+++... .......|+..++++.....+...
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~--------~~~~~~~i~~~d~~~g~~~~~~~~~ 331 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS--------RDQKKLDLVEVTLASNQQRVLAHET 331 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE--------TTSSEEEEEEEETTTCCEEEEEEEE
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec--------ccCCeEEEEEEECCCCceEEEEEcC
Confidence 012566777766 554444322 12 778899 988888876431 001234677777765554444422
Q ss_pred CCC---CceeEEEecCCCeEEEEcCCC--CeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEe
Q psy17325 366 KIY---WPNGLTLDIATRRVYFADSKL--DFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYST 440 (461)
Q Consensus 366 ~l~---~p~glaiD~~~~~ly~~d~~~--~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd 440 (461)
.-. ....+++.+++. ++++-... ..|+.+++ +|. ...+........ ...+++.+++.||++-
T Consensus 332 ~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~--~~~-~~~l~~~~~~v~---------~~~~~s~dg~~l~~~~ 398 (741)
T 2ecf_A 332 SPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDS--KGK-AAALTHGNWSVD---------ELLAVDEKAGLAYFRA 398 (741)
T ss_dssp CSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECS--SSC-EEESCCSSSCEE---------EEEEEETTTTEEEEEE
T ss_pred CCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcC--CCC-eeeeeecceEEE---------eEeEEeCCCCEEEEEE
Confidence 111 235788886655 55553333 47888887 454 333322211111 1123555666777665
Q ss_pred CCC
Q psy17325 441 EGA 443 (461)
Q Consensus 441 ~~~ 443 (461)
...
T Consensus 399 ~~~ 401 (741)
T 2ecf_A 399 GIE 401 (741)
T ss_dssp CSS
T ss_pred eCC
Confidence 544
|
| >4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=67.48 Aligned_cols=75 Identities=27% Similarity=0.637 Sum_probs=48.7
Q ss_pred cccCCCCCCCCCceeCC--CCceEeCCCCCeecCCCCcee-------------cCcceecCCccc--Ccee-------ec
Q psy17325 32 ECKHKFGLCSNTCHPTP--LGALCTCPPGEILSNDSVTCQ-------------DMNECEQPGYCS--QMCT-------NT 87 (461)
Q Consensus 32 ~C~~~~~~C~~~C~~~~--~~~~C~C~~G~~l~~~~~~C~-------------d~~eC~~~~~C~--~~C~-------~~ 87 (461)
+|..++..-...|++.. ++|.|.|++||. +..|+ ++++|. ...|. ..|. ++
T Consensus 2 ~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~----G~~C~~~~~~~~~~~~c~~~~~C~-~~~C~~~g~C~~~~~~~~~~ 76 (143)
T 4d90_A 2 ICDPNPCENGGICLPGLADGSFSCECPDGFT----DPNCSSVVEVASDEEEPTSAGPCT-PNPCHNGGTCEISEAYRGDT 76 (143)
T ss_dssp -CCSCCCGGGCEEEC-----CCEEECCTTCC----TTTTCSCCCCTTTTTSCCCCCTTS-SCCCCTTCEEEECCCEETTE
T ss_pred cCCCCcCCCCCEeeCCCCCCCEEeECCCCCC----CCCCccCccccccccccccCCcCC-CCCCCCCCEecCCCccccCC
Confidence 45444322234688765 689999999995 44554 345564 33454 3787 67
Q ss_pred cCCccccCCCCeeeeCCCCcee-eccccc
Q psy17325 88 KGSYICSCNEGYVLEYDNHTCK-AINHSA 115 (461)
Q Consensus 88 ~g~~~C~C~~g~~l~~~~~~C~-~~~~~~ 115 (461)
.++|.|.|++||. +..|. +++++.
T Consensus 77 ~~~~~C~C~~G~~----G~~C~~~i~~C~ 101 (143)
T 4d90_A 77 FIGYVCKCPRGFN----GIHCQHNINECE 101 (143)
T ss_dssp ECCEEEECCTTEE----STTSCEECCTTT
T ss_pred CCCeEeECcCCCc----CCCcccCCCcCC
Confidence 7899999999994 67785 777764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0047 Score=65.23 Aligned_cols=264 Identities=12% Similarity=0.077 Sum_probs=135.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC---
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG--- 226 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG--- 226 (461)
.+..+++.+. +.+.++. .+.|.+.++.+.....+.... ..+..+++.|... +|+++. ...|+..++++
T Consensus 83 ~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~SpdG~--~la~~~---~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTYLFDTN-EETASLDFSPVGD--RVAYVR---NHNLYIARGGKLGE 153 (706)
T ss_dssp CCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEEEECCT-TCCTTCEECTTSS--EEEEEE---TTEEEEEECBCTTS
T ss_pred CceeEEECCC-CeEEEEE--CCEEEEEECCCCceEEccCCc-ccccCCcCCCCCC--EEEEEE---CCeEEEEecCcccc
Confidence 4667788776 6666653 389999998877655554432 4467789999866 777664 25788888876
Q ss_pred --CCcEEEEecccc--------------cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCC
Q psy17325 227 --SNRSTIISTKIY--------------WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN 290 (461)
Q Consensus 227 --~~~~~i~~~~~~--------------~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~ 290 (461)
.....+...... .+.++++.+.+++|+++......+.......... ....+ ..+.+-..+..
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~-~~~~~-~~~~y~~~g~~ 231 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHP-LEAES-KPLYYPMAGTP 231 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCS-SSCEE-EEECCCBTTSC
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCC-CCCce-EEeeCCCCCCC
Confidence 444333322111 2478899988888887752111000000000000 00000 00000000000
Q ss_pred CcceeeeEEeCCCCceEEEEeCC---e-eeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCC-CeEEEee
Q psy17325 291 GVPLKIGKANMDGSNASILVSGQ---L-YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGS-NRSTIIS 364 (461)
Q Consensus 291 ~~~~~I~~~~~~g~~~~~l~~~~---~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~-~~~~l~~ 364 (461)
.-...|.+.++++.....+.... . +..+++.|.+..|+++... .. ....|...++++. ..+.+..
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---------~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN---------RAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC---------TTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeC---------CCCCeeEEEEEECCCCceeeEEEE
Confidence 00135777777766544433221 1 6788999888878775332 10 1235666676554 4444432
Q ss_pred -CCC---CCceeEEEec--CCCeEEEEcC-CCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEE
Q psy17325 365 -TKI---YWPNGLTLDI--ATRRVYFADS-KLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLY 437 (461)
Q Consensus 365 -~~l---~~p~glaiD~--~~~~ly~~d~-~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lY 437 (461)
..- ....++++.+ +++.||.++. +..+|+.++. +|.....+........ ..++++.+++.||
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~v~---------~~~~~spdg~~l~ 371 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT--TGRLIRQVTKGEWEVT---------NFAGFDPKGTRLY 371 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET--TSCEEEECCCSSSCEE---------EEEEECTTSSEEE
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC--CCCEEEecCCCCeEEE---------eeeEEcCCCCEEE
Confidence 111 1236788876 5555554533 3357777776 5655443322111111 0134555566677
Q ss_pred EEeCCCc
Q psy17325 438 YSTEGAE 444 (461)
Q Consensus 438 wtd~~~~ 444 (461)
++....+
T Consensus 372 ~~~~~~~ 378 (706)
T 2z3z_A 372 FESTEAS 378 (706)
T ss_dssp EEESSSC
T ss_pred EEecCCC
Confidence 7665543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.002 Score=62.26 Aligned_cols=227 Identities=8% Similarity=0.010 Sum_probs=114.4
Q ss_pred eeeeeeeecCCeEEEEeC--CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDS--RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
+..+++.+.++.|+++.. +...|.+.++++.....+.........++++.|... +|+++. . ...|++.++++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~--~l~~~~-~-~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER--AFFYVK-N-ELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS--EEEEEE-T-TTEEEEEETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC--EEEEEE-c-CCcEEEEECCCCC
Confidence 344566666777666543 345788889887766555433221122367888866 887776 2 2479999998766
Q ss_pred cEEEEecccc-cceeEEeeccCCeeEEecCCCce-eeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 229 RSTIISTKIY-WPNGLTLDIATRRVYFADSKLDF-IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 229 ~~~i~~~~~~-~P~glavD~~~~~ly~~d~~~~~-i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.+.+...... .|. +..|+++...... ++... +....-.+.+++...........|++.++++...
T Consensus 114 ~~~~~~~~~~~~~~-------g~~l~~~~~~~~~~~~~~~------~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 114 EQVIYTVDEEWKGY-------GTWVANSDCTKLVGIEILK------RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp EEEEEECCTTEEEE-------EEEEECTTSSEEEEEEEEG------GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred cEEEEecccccCCC-------CCEEEeccCCccccccccc------cccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 5555442111 122 2222222110000 00000 0000000000000000000003577778776655
Q ss_pred EEEEeCCe-eeeEEEec-cCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCC-CCCceeEEEecCCCeE
Q psy17325 307 SILVSGQL-YEALALDL-ENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTK-IYWPNGLTLDIATRRV 382 (461)
Q Consensus 307 ~~l~~~~~-p~~iavd~-~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~-l~~p~glaiD~~~~~l 382 (461)
+.+..... ...+++.| .++.|+++... .+. ...+|+..++++...+.+.... ...+..+++.+++++|
T Consensus 181 ~~~~~~~~~~~~~~~sp~dg~~l~~~~~~--------~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 181 EVIHQDTAWLGHPIYRPFDDSTVGFCHEG--------PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAM 252 (396)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECS--------CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCE
T ss_pred EeeccCCcccccceECCCCCCEEEEEecC--------CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEE
Confidence 55554333 66777877 55555554221 000 1157888888887766655321 2246678898877878
Q ss_pred EEEcC--CCCe--EEEEEecCCCCe
Q psy17325 383 YFADS--KLDF--IDFCNYDGTGRQ 403 (461)
Q Consensus 383 y~~d~--~~~~--I~~~~~~g~g~~ 403 (461)
+++.. .... |+.+++. +|..
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~-~g~~ 276 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPE-TLEN 276 (396)
T ss_dssp EEEEEETTTCCEEEEEECTT-TCCE
T ss_pred EEEecCCCCccceEEEEECC-CCCe
Confidence 77632 2334 8899883 3443
|
| >2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.7e-06 Score=56.82 Aligned_cols=26 Identities=38% Similarity=0.969 Sum_probs=23.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+|+||+..|+|||..||.||+|| ..|
T Consensus 16 nG~CIp~~~~CDG~~DC~DgSDE-~~~ 41 (52)
T 2m0p_A 16 NHQCISKNWVCDTDNDCGDGSDE-KNC 41 (52)
T ss_dssp TCCEEETTSTTSSSCSSSSCHHH-HSC
T ss_pred CCCEEecCccCCCCCCCCCCCcc-ccc
Confidence 68999999999999999999999 445
|
| >2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.4e-06 Score=61.84 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=28.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCC--CCC-CCcccCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGP--GCD-LAECKHKFGLC 40 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~--~C~-~~~C~~~~~~C 40 (461)
++.|||.+|+|||..||.||+||.. .|. ...|....++|
T Consensus 19 ~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c 60 (80)
T 2kny_A 19 THVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGS 60 (80)
T ss_dssp SSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCH
T ss_pred CCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchh
Confidence 4789999999999999999999953 343 23454444444
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0067 Score=58.98 Aligned_cols=210 Identities=9% Similarity=0.044 Sum_probs=114.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCC----CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENG----TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G----~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+..+++.+.+..| ++-..++.|.+.+++. ......+.........+++.|..+ .++++- +....|...++.
T Consensus 69 ~v~~~~~s~~~~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~-~~dg~v~iwd~~ 144 (416)
T 2pm9_A 69 KFNDLDWSHNNKII-AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD--NVLASG-GNNGEIFIWDMN 144 (416)
T ss_dssp CEEEEEECSSSSCE-EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST--TBEEEE-CSSSCEEBCBTT
T ss_pred ceEEEEECCCCCeE-EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC--CEEEEE-cCCCeEEEEECC
Confidence 34566676544444 4444568899988776 323333333335678999998733 344443 344677777776
Q ss_pred CCC------cEEEE---ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 226 GSN------RSTII---STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 226 G~~------~~~i~---~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
... ..... .........+++.+.++.++++-...+ .|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----------------------------------~v 190 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN----------------------------------FA 190 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS----------------------------------CE
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC----------------------------------CE
Confidence 543 11111 112335678888876455555544332 34
Q ss_pred eEEeCCCCceEEEEeC-------Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-CeEEEee-CC
Q psy17325 297 GKANMDGSNASILVSG-------QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS-NRSTIIS-TK 366 (461)
Q Consensus 297 ~~~~~~g~~~~~l~~~-------~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~-~~~~l~~-~~ 366 (461)
...++........+.. .. +..+++.|.+..++++-... +..+.|...++... .....+. ..
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------~~~~~i~~~d~~~~~~~~~~~~~~~ 261 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS---------DNDPSILIWDLRNANTPLQTLNQGH 261 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC---------SSSCCCCEEETTSTTSCSBCCCSCC
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC---------CCCceEEEEeCCCCCCCcEEeecCc
Confidence 4555544333222222 12 78899998776555544330 01115555555432 2222222 23
Q ss_pred CCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 367 IYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 367 l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
-.....|++.+.+++++++-...+.|...++. ++.....+
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~-~~~~~~~~ 301 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE-SAEQLSQF 301 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSS-SCCEEEEE
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC-CCccceee
Confidence 44577899987456655555667889888883 45543333
|
| >1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.6e-05 Score=66.68 Aligned_cols=56 Identities=30% Similarity=0.635 Sum_probs=45.9
Q ss_pred CCCCCCCCCCC-CCCcccCCCCCCCCCc-eeCCCCceEeCCCCCeecCCCCceecCcce
Q psy17325 18 CPNGADEGPGC-DLAECKHKFGLCSNTC-HPTPLGALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 18 C~dg~de~~~C-~~~~C~~~~~~C~~~C-~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
|+.|+. +..| +.++|...+..|.+.| .+++++|.|.|++||.+..++.+|++++++
T Consensus 73 C~~G~~-G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~~~ 130 (146)
T 1x7a_L 73 CQVGFE-GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF 130 (146)
T ss_dssp CCSSEE-STTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEECSSS
T ss_pred cCCCCc-CCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCCCCC
Confidence 444543 3567 3578988778899999 999999999999999998889999988764
|
| >1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.2e-05 Score=58.84 Aligned_cols=47 Identities=38% Similarity=0.948 Sum_probs=39.8
Q ss_pred ceecCcceecCCcccC-ceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 67 TCQDMNECEQPGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 67 ~C~d~~eC~~~~~C~~-~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
+|+|++||..+..|.+ .|.++.++|.|.|++||.+ ++..|.+++++.
T Consensus 1 sC~dideC~~~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dideC~ 48 (82)
T 1emn_A 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECS 48 (82)
T ss_dssp CCCCCCSSSSTTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCGGG
T ss_pred CCCccccCCCCCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCccccc
Confidence 4789999976567865 8999999999999999987 467899888875
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.011 Score=56.76 Aligned_cols=204 Identities=12% Similarity=0.073 Sum_probs=111.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+.+ +..++-...+.|.+.++........+.........+++.+... .++.+- +....|...++.....
T Consensus 141 ~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~~~~s~-~~dg~v~~wd~~~~~~ 216 (357)
T 4g56_B 141 IVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--TIFLSC-GEDGRILLWDTRKPKP 216 (357)
T ss_dssp CEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--SCEEEE-ETTSCEEECCTTSSSC
T ss_pred CEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--ceeeee-ccCCceEEEECCCCce
Confidence 35667777644 4445556678899999876655544544445678899988755 566655 4456777766653322
Q ss_pred EEEEe--cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC-Cce
Q psy17325 230 STIIS--TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SNA 306 (461)
Q Consensus 230 ~~i~~--~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~~ 306 (461)
..... ..-..+..+++.+.++.++.+-.... .|...++.. ...
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~----------------------------------~i~~wd~~~~~~~ 262 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETG----------------------------------NVSLVNIKNPDSA 262 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS----------------------------------CEEEEESSCGGGC
T ss_pred eeeeeeccccccccchhhhhcccceEEEeeccc----------------------------------ceeEEECCCCcEe
Confidence 11111 12234677888877666665433332 244444332 222
Q ss_pred EEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 307 SILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 307 ~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
..+..... ...|++.|.++.+..+-.. .+.|...+++........ ..-...++|++.|.+++++.+
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~~~lasgs~------------D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSSPFLASISE------------DCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSCCEEEEET------------TSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEE
T ss_pred EEEeccceeEEEEEEcCCCCCEEEEEeC------------CCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEE
Confidence 23222112 6788888877655544333 344554454433222222 233457789998766666666
Q ss_pred cCCCCeEEEEEecCCCCeE
Q psy17325 386 DSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 386 d~~~~~I~~~~~~g~g~~~ 404 (461)
-...++|..-++...|...
T Consensus 330 ~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 330 VGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp EETTSCEEEEECC------
T ss_pred EcCCCeEEEEECCCCCccc
Confidence 5556777777774345443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0025 Score=60.15 Aligned_cols=185 Identities=14% Similarity=0.199 Sum_probs=100.1
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
..+++| ..++||+.... |.+.+.+|.......... ......+++ .+ .||+.. ....|++.+.+|...-.
T Consensus 63 ~~~~~~-~~g~l~v~t~~---l~~~d~~g~~~~~~~~~~-~~~~~~~~~--~~--~l~v~t--~~~~l~~~d~~g~~~~~ 131 (330)
T 3hxj_A 63 CRPSIG-KDGTIYFGSDK---VYAINPDGTEKWRFDTKK-AIVSDFTIF--ED--ILYVTS--MDGHLYAINTDGTEKWR 131 (330)
T ss_dssp ECCEET-TTTEECCSSCE---EEEECCCGGGGGGSCC------CCEEEE--TT--EEEEEC--TTSEEEEECTTSCEEEE
T ss_pred cceEEe-cCCcEEEecCc---EEEECCCCcEEEEEECCC-CcccCceEE--CC--EEEEEe--cCCEEEEEcCCCCEEEE
Confidence 345555 25677765433 888887765422111111 112234454 56 788765 24688888888543222
Q ss_pred EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe
Q psy17325 232 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS 311 (461)
Q Consensus 232 i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~ 311 (461)
. .........+++|. .++||++.... .|.+.+.+|........
T Consensus 132 ~-~~~~~~~~~~~~~~-~g~l~vgt~~~-----------------------------------~l~~~d~~g~~~~~~~~ 174 (330)
T 3hxj_A 132 F-KTKKAIYATPIVSE-DGTIYVGSNDN-----------------------------------YLYAINPDGTEKWRFKT 174 (330)
T ss_dssp E-ECSSCCCSCCEECT-TSCEEEECTTS-----------------------------------EEEEECTTSCEEEEEEC
T ss_pred E-cCCCceeeeeEEcC-CCEEEEEcCCC-----------------------------------EEEEECCCCCEeEEEec
Confidence 2 22222334566764 56677765432 36666666443322222
Q ss_pred CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC
Q psy17325 312 GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD 390 (461)
Q Consensus 312 ~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~ 390 (461)
... ...+++|. ++.||++. + .|++.+.+|....... .....+.++++| .+++||++.. .+
T Consensus 175 ~~~~~~~~~~d~-~g~l~v~t-~--------------~l~~~d~~g~~~~~~~-~~~~~~~~~~~~-~~g~l~v~t~-~~ 235 (330)
T 3hxj_A 175 NDAITSAASIGK-DGTIYFGS-D--------------KVYAINPDGTEKWNFY-AGYWTVTRPAIS-EDGTIYVTSL-DG 235 (330)
T ss_dssp SSCCCSCCEECT-TCCEEEES-S--------------SEEEECTTSCEEEEEC-CSSCCCSCCEEC-TTSCEEEEET-TT
T ss_pred CCCceeeeEEcC-CCEEEEEe-C--------------EEEEECCCCcEEEEEc-cCCcceeceEEC-CCCeEEEEcC-CC
Confidence 122 56677774 67788765 3 5666664444332222 233457788887 5678998854 46
Q ss_pred eEEEEEecCCCCeEE
Q psy17325 391 FIDFCNYDGTGRQQV 405 (461)
Q Consensus 391 ~I~~~~~~g~g~~~~ 405 (461)
.|.+++. +|....
T Consensus 236 gl~~~~~--~g~~~~ 248 (330)
T 3hxj_A 236 HLYAINP--DGTEKW 248 (330)
T ss_dssp EEEEECT--TSCEEE
T ss_pred eEEEECC--CCCEeE
Confidence 7888876 666543
|
| >1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=2.5e-05 Score=59.08 Aligned_cols=52 Identities=37% Similarity=0.818 Sum_probs=41.7
Q ss_pred CCCCCCC----CCCCC-CCCcccCCCCCCC-CCceeCCCCceEeCCCCCeecCCCCce
Q psy17325 17 DCPNGAD----EGPGC-DLAECKHKFGLCS-NTCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 17 dC~dg~d----e~~~C-~~~~C~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
.|+.|+. .+..| +++||...+..|. ..|.+++++|.|.|++||.+..++++|
T Consensus 28 ~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~C 85 (86)
T 1lmj_A 28 KCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85 (86)
T ss_dssp CCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred eCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCcc
Confidence 4676663 24667 6899988777786 579999999999999999987777776
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.063 Score=53.08 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=91.2
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecC--C-CCcEEEEe-cccccceeEEeeccCCeeEEecCCCceeeecccc
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD--G-SNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLE 268 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d--G-~~~~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~ 268 (461)
...++++.|... +|+.+- +....|...++. . .....+.. ..-..+..|++.+.+..|+.++...
T Consensus 104 ~v~~~~~s~d~~--~l~~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g--------- 171 (450)
T 2vdu_B 104 YIRNLRLTSDES--RLIACA-DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG--------- 171 (450)
T ss_dssp CEEEEEECTTSS--EEEEEE-GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS---------
T ss_pred ceEEEEEcCCCC--EEEEEE-CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC---------
Confidence 467899999866 775554 334566666665 3 33333322 2234678999998888888776532
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce-E----EEEe-CCeeeeEEEecc--CCeEEEeecCceeeEEE
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-S----ILVS-GQLYEALALDLE--NGMLYYSTLKCTRWLFW 340 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~-~----~l~~-~~~p~~iavd~~--~~~lY~t~~~~~~~l~~ 340 (461)
.|...++..... . .+.. ...+..|++.|. .+.+.++-..
T Consensus 172 --------------------------~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------- 218 (450)
T 2vdu_B 172 --------------------------DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR------- 218 (450)
T ss_dssp --------------------------EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-------
T ss_pred --------------------------cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-------
Confidence 244444332211 1 1111 112778889886 1433333332
Q ss_pred eecCCCCceEEEeecC-CCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 341 TDWGENPRIERIGMDG-SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 341 ~d~~~~~~I~~~~~dG-~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
.+.|...++.. .....+....-..+..+++. .+..|+.+ ...+.|...++. +|.....+
T Consensus 219 -----d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~-~~d~~v~vwd~~-~~~~~~~~ 278 (450)
T 2vdu_B 219 -----DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA-GGDDKIFAWDWK-TGKNLSTF 278 (450)
T ss_dssp -----TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE-ESSSEEEEEETT-TCCEEEEE
T ss_pred -----CCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE-eCCCeEEEEECC-CCcEeeee
Confidence 34555555543 33333332444567889997 55555544 566789999983 56554443
|
| >2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.61 E-value=6e-06 Score=54.71 Aligned_cols=27 Identities=41% Similarity=0.935 Sum_probs=23.6
Q ss_pred CC-ccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 AD-RCVNLTKVCDGKTDCPNGADEGPGCD 29 (461)
Q Consensus 2 ~~-~Ci~~~~~Cd~~~dC~dg~de~~~C~ 29 (461)
++ +||+.+|+|||..||.||||| ..|.
T Consensus 16 ~g~~CI~~~~~CDG~~DC~DgSDE-~~C~ 43 (48)
T 2i1p_A 16 DGSSCINSRYRCDGVYDCRDNSDE-AGCP 43 (48)
T ss_dssp SSSCEECGGGSSSSSCCSSSSHHH-HSSC
T ss_pred CCCEeCCHhhcCCCCCCCCCCccc-ccCC
Confidence 45 799999999999999999999 4563
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0067 Score=58.40 Aligned_cols=194 Identities=6% Similarity=-0.039 Sum_probs=100.2
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEE----EecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIV----LAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~----l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
+..+++.+. +.+. +-...+.|.+.++....... ...+.-.....|++.|... +|.... ....|...++..
T Consensus 97 V~~~~~s~d-~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs--~dg~v~iwd~~~ 170 (357)
T 4g56_B 97 VTDVAWVSE-KGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGG--KDFSVKVWDLSQ 170 (357)
T ss_dssp EEEEEEETT-TEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEE--TTSCEEEEETTT
T ss_pred EEEEEEcCC-CCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEe--CCCeEEEEECCC
Confidence 455666543 3443 44556788887764332111 1112223467899998755 665544 345677777764
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
......+.........+++.+.++.++.+-...+. |...++.....
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~----------------------------------v~~wd~~~~~~ 216 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR----------------------------------ILLWDTRKPKP 216 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSC----------------------------------EEECCTTSSSC
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCc----------------------------------eEEEECCCCce
Confidence 33333333334456778887766666655444332 33333322211
Q ss_pred -EEEEeC---CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 307 -SILVSG---QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 307 -~~l~~~---~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
..+... ..+..+++.|.++.++.+-.. .+.|...++.. .....+. ..-.....|++.+.+++
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~------------d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~ 283 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDE------------TGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSP 283 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEES------------SSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSC
T ss_pred eeeeeeccccccccchhhhhcccceEEEeec------------ccceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCC
Confidence 111110 116788888887776665433 34455555432 2223332 33445678888876666
Q ss_pred EEEEcCCCCeEEEEEe
Q psy17325 382 VYFADSKLDFIDFCNY 397 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~ 397 (461)
+..+-...+.|...++
T Consensus 284 ~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 284 FLASISEDCTVAVLDA 299 (357)
T ss_dssp CEEEEETTSCEEEECT
T ss_pred EEEEEeCCCEEEEEEC
Confidence 6555455577888887
|
| >1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=1e-05 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.804 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+..|+|||..||.||+||.
T Consensus 14 ~g~CI~~~~~CDg~~DC~DgSDE~ 37 (44)
T 1j8e_A 14 SGRCIPEHWTCDGDNDCGDYSDET 37 (44)
T ss_dssp TSCEEEGGGTTSSSCCSSSSGGGS
T ss_pred CCCeEecCcccCCCCCCCCCCCCC
Confidence 578999999999999999999994
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.027 Score=54.80 Aligned_cols=222 Identities=8% Similarity=0.010 Sum_probs=114.2
Q ss_pred EEEEeCCCCeEEEEeCCCCcEE----EEecCCCCCceeEEEcC-CCCceEEEEeecCCCCcEEEEecCCC-------CcE
Q psy17325 163 IYWLDSRLNRIEVCDENGTNRI----VLAKDNITQPRGMMLDP-SPGTRWLFWTDWGENPRIERIGMDGS-------NRS 230 (461)
Q Consensus 163 ly~~d~~~~~I~~~~~~G~~~~----~l~~~~~~~p~~ia~d~-~~g~~~ly~td~~~~~~I~~~~~dG~-------~~~ 230 (461)
+.++-...+.|.+.+++..... ..+...-.....+++.| ... .|+.+. ....|...++... ...
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGS--EDCTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEE--TTSEEEEEECCTTCCSSCBCSCS
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEe--CCCeEEEEEccCCCCccccCCce
Confidence 3444455677777776543221 11222334578899998 544 555444 3456777776543 122
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
..+.........|++.+.+++++++-...+ .|...++........+
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~ 170 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDN----------------------------------VILVWDVGTGAAVLTL 170 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTS----------------------------------CEEEEETTTTEEEEEE
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCC----------------------------------EEEEEECCCCCccEEE
Confidence 223333456778899887655554433332 3555555544333333
Q ss_pred --eCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEE-eeCCCCCceeEEEecCCCeEEE
Q psy17325 311 --SGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTI-ISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 311 --~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l-~~~~l~~p~glaiD~~~~~ly~ 384 (461)
.... ...+++.|.+..|+.+.. .+.|...++.... ...+ ....-..+..+++.+. ++++.
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 236 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCR-------------DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILT 236 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEET-------------TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEE
T ss_pred ecCCCCCceEEEEECCCCCEEEEEec-------------CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEE
Confidence 1111 788999986665554433 3455555554322 2222 1122223678888754 55555
Q ss_pred Ec---CCCCeEEEEEecCCCCe-EEEEE-ccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 385 AD---SKLDFIDFCNYDGTGRQ-QVILI-DLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 385 ~d---~~~~~I~~~~~~g~g~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
+- ...+.|...++. ++.. ..... ...... ..++++.++..||++-...+.|+
T Consensus 237 ~g~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTK-HLEEPLSLQELDTSSGV----------LLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp EEECTTCCEEEEEEETT-BCSSCSEEEECCCCSSC----------EEEEEETTTTEEEEEETTCSCEE
T ss_pred EeccCCCCceEEEEcCc-cccCCceEEeccCCCce----------eEEEEcCCCCEEEEEEcCCCeEE
Confidence 54 456788888883 2332 11111 111111 12344445667777766666554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.005 Score=63.46 Aligned_cols=193 Identities=10% Similarity=-0.033 Sum_probs=112.4
Q ss_pred eeeeeeeecCCeEEEEeC--CC--CeEEEEeC--CCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 151 VEGLAYDWIGGHIYWLDS--RL--NRIEVCDE--NGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--~~--~~I~~~~~--~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
...+++.+. +.+|+++. +. .+|...++ +|... .+... .....+++.|... ..+|.+. .. ..+...++
T Consensus 67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~-~~~~~s~-~~-~~~~l~d~ 139 (582)
T 3o4h_A 67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGE-AVVFTGA-TE-DRVALYAL 139 (582)
T ss_dssp ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSS-CEEEEEE-CS-SCEEEEEE
T ss_pred cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCC-eEEEEec-CC-CCceEEEc
Confidence 344555444 56788875 22 36778888 77765 33221 2234456655543 1345444 22 33445577
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
++...+.+..... ..+++++.++.|+++....+.- ..|++.++++.
T Consensus 140 ~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~-------------------------------~~i~~~d~~~g 185 (582)
T 3o4h_A 140 DGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR-------------------------------VSLFTSNLSSG 185 (582)
T ss_dssp ETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE-------------------------------EEEEEEETTTC
T ss_pred cCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC-------------------------------eEEEEEcCCCC
Confidence 7655554543321 6888999888888654331100 24777887766
Q ss_pred ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEE--------E
Q psy17325 305 NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLT--------L 375 (461)
Q Consensus 305 ~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~gla--------i 375 (461)
..+.+..... ...+++.|.+..|+.++.. ....|++.++++...+ ++...-..+.+++ +
T Consensus 186 ~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~-----------~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 186 GLRVFDSGEGSFSSASISPGMKVTAGLETA-----------REARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp CCEEECCSSCEEEEEEECTTSCEEEEEECS-----------SCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred CceEeecCCCccccceECCCCCEEEEccCC-----------CeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE
Confidence 6665544333 7889999988888743332 1247888888887766 4423333344555 8
Q ss_pred ecCCCeEEEEcCCCCeEEEEEe
Q psy17325 376 DIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 376 D~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++++ +||++-...+++....+
T Consensus 254 spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 254 LPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp CTTS-CEEEEEEETTEEEEEET
T ss_pred cCCC-cEEEEEEcCCcEEEEEE
Confidence 8666 77776555555555554
|
| >2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A | Back alignment and structure |
|---|
Probab=97.53 E-value=4.7e-05 Score=60.10 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=38.2
Q ss_pred CCceecCcceec-CCcccCceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 65 SVTCQDMNECEQ-PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 65 ~~~C~d~~eC~~-~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
+..| +++||.. ++.|++.|.++.++|.|.|++||.+. ++..|.+++++.
T Consensus 24 ~~~C-d~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dideC~ 73 (107)
T 2w2n_E 24 QGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQ 73 (107)
T ss_dssp SCCB-SCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC-----
T ss_pred CCCC-cCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccccccC
Confidence 4568 7999985 46899999999999999999999986 568899998875
|
| >1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* | Back alignment and structure |
|---|
Probab=97.52 E-value=8.2e-05 Score=59.49 Aligned_cols=55 Identities=29% Similarity=0.642 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCC----CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcc
Q psy17325 18 CPNGADEGPGCD----LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73 (461)
Q Consensus 18 C~dg~de~~~C~----~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~e 73 (461)
|+.|+ ++..|. .++|...+..|.+.|.++.++|.|.|++||.+..+++.|+++.+
T Consensus 39 C~~G~-~G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~~ 97 (114)
T 1aut_L 39 CRSGW-EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 97 (114)
T ss_dssp ECTTE-ESTTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred CCCCC-cCCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCcc
Confidence 44444 234563 34788777889999999999999999999999888999987643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.017 Score=64.07 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=93.1
Q ss_pred eeeeeeecCCeEEEEeCCCCeEE-EEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIE-VCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~-~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
..+++. .++.|+++.. ..+|. +.++++.....+. .....+..+++.|... +|+++. ....|+..++.+....
T Consensus 341 ~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~--~la~~~--~~~~v~~~d~~tg~~~ 413 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGK--FAVVAN--DRFEIMTVDLETGKPT 413 (1045)
T ss_dssp EEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSS--EEEEEE--TTSEEEEEETTTCCEE
T ss_pred EeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec-CCccceeeeEECCCCC--EEEEEC--CCCeEEEEECCCCceE
Confidence 344444 3445665554 56788 8888877665555 3335688999999866 787766 2358999999866655
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
.+..........+++.+.++.|.++....+.-. ...-...|.+.++++.....+.
T Consensus 414 ~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~-------------------------~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 414 VIERSREAMITDFTISDNSRFIAYGFPLKHGET-------------------------DGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp EEEECSSSCCCCEEECTTSCEEEEEEEECSSTT-------------------------CSCCEEEEEEEETTTTEEEECS
T ss_pred EeccCCCCCccceEECCCCCeEEEEecCccccc-------------------------cCCCCCeEEEEECCCCcEEEee
Confidence 555443444578999988888877643210000 0000035677777765433333
Q ss_pred eCCe-eeeEEEeccCCeEEEeecC
Q psy17325 311 SGQL-YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 311 ~~~~-p~~iavd~~~~~lY~t~~~ 333 (461)
.... +..+++.|.+..|||+...
T Consensus 469 ~~~~~~~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 469 TENSHDYAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp CSSSBEEEEEECTTSCEEEEEESC
T ss_pred CCCcccCCceEcCCCCEEEEEecc
Confidence 3222 6778899999999987653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0023 Score=61.92 Aligned_cols=193 Identities=11% Similarity=-0.005 Sum_probs=105.2
Q ss_pred CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcC-CCCceEEEEeecCCC----CcEEEEecCCCCcEEEEecc-ccccee
Q psy17325 169 RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDP-SPGTRWLFWTDWGEN----PRIERIGMDGSNRSTIISTK-IYWPNG 242 (461)
Q Consensus 169 ~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~-~~g~~~ly~td~~~~----~~I~~~~~dG~~~~~i~~~~-~~~P~g 242 (461)
....|.+.++++.....+... ......+++.| ..+ .|+++.-+.. .+|+.+++++...+.+.... ...+..
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~--~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQD-TAWLGHPIYRPFDDS--TVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH 242 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEE--EEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred CcceEEEEECCCCcEEeeccC-CcccccceECCCCCC--EEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence 345677788776555544432 23467788888 433 4555431332 57999999887655554321 224667
Q ss_pred EEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEec
Q psy17325 243 LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL 322 (461)
Q Consensus 243 lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~ 322 (461)
+++.+.++.|+++....+.- ...|++.++.+...+.+....... +++.|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~------------------------------~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~ 291 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQT------------------------------DRVIYKANPETLENEEVMVMPPCS-HLMSN 291 (396)
T ss_dssp EEECTTSSCEEEEEEETTTC------------------------------CEEEEEECTTTCCEEEEEECCSEE-EEEEC
T ss_pred eEECCCCCEEEEEecCCCCc------------------------------cceEEEEECCCCCeEEeeeCCCCC-CCccC
Confidence 78888788777764321100 013677777655544444321112 55666
Q ss_pred -cCCeEEEeecCceeeEEEee-----cCCCCceEEEeecCCCeEEEeeCCCC----------CceeEEEecCCCeEEEEc
Q psy17325 323 -ENGMLYYSTLKCTRWLFWTD-----WGENPRIERIGMDGSNRSTIISTKIY----------WPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 323 -~~~~lY~t~~~~~~~l~~~d-----~~~~~~I~~~~~dG~~~~~l~~~~l~----------~p~glaiD~~~~~ly~~d 386 (461)
.+..|+++... .. +...+ ......|+..++++...+.+...... .+..+++.+++++|+++.
T Consensus 292 ~dg~~l~~~~~~-~p-~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 292 FDGSLMVGDGCD-AP-VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp SSSSEEEEEECC-C-----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred CCCceEEEecCC-cc-eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 44433332110 00 00000 01246788888876665555433221 145678887888888875
Q ss_pred CC--CCeEEEEEe
Q psy17325 387 SK--LDFIDFCNY 397 (461)
Q Consensus 387 ~~--~~~I~~~~~ 397 (461)
.. ...|+.+++
T Consensus 370 ~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 370 DFEGVPAIYIADV 382 (396)
T ss_dssp CTTSSCEEEEEEC
T ss_pred cCCCCceEEEEEE
Confidence 43 346888888
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.13 Score=54.84 Aligned_cols=201 Identities=11% Similarity=0.080 Sum_probs=117.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+.++++.+.+..|..+. .++.|.+.+.........+...-.....+++.|... +|..+. ....|...++.....
T Consensus 15 ~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~--~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN--WIIVGS--DDFRIRVFNYNTGEK 89 (814)
T ss_dssp CEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT--EEEEEE--TTSEEEEEETTTCCE
T ss_pred ceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC--EEEEEe--CCCeEEEEECCCCcE
Confidence 466778877666565554 468899999655443333333335678999999866 777665 356788888775444
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-ceEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-NASI 308 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-~~~~ 308 (461)
...+.........+++.+.+..|+.+.... .|...+++.. ....
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----------------------------------~i~vw~~~~~~~~~~ 134 (814)
T 3mkq_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL-----------------------------------TVKLWNWENNWALEQ 134 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTS-----------------------------------EEEEEEGGGTSEEEE
T ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEcCCC-----------------------------------EEEEEECCCCceEEE
Confidence 333443445678899988777777655432 3555555443 2222
Q ss_pred EEeCC-e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEEeeCCCCCceeEEEecC-CCeEEE
Q psy17325 309 LVSGQ-L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTIISTKIYWPNGLTLDIA-TRRVYF 384 (461)
Q Consensus 309 l~~~~-~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l~~~~l~~p~glaiD~~-~~~ly~ 384 (461)
.+... . ...+++.|..+.++++-.. .+.|...++.... ...+..........+++.+. ++.+++
T Consensus 135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~------------dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 135 TFEGHEHFVMCVAFNPKDPSTFASGCL------------DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEET------------TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEcCCCCcEEEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 23222 2 7788888844544444333 3455555554333 33333233355677888651 344444
Q ss_pred EcCCCCeEEEEEecCCCCe
Q psy17325 385 ADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 385 ~d~~~~~I~~~~~~g~g~~ 403 (461)
+-...+.|...++. ++..
T Consensus 203 ~~~~dg~i~~~d~~-~~~~ 220 (814)
T 3mkq_A 203 TASDDLTIKIWDYQ-TKSC 220 (814)
T ss_dssp EECTTSEEEEEETT-TTEE
T ss_pred EEeCCCEEEEEECC-CCcE
Confidence 44556788888872 3443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.069 Score=51.79 Aligned_cols=199 Identities=8% Similarity=-0.059 Sum_probs=116.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCC-------cEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT-------NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~-------~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
.+..+++.+..++++++-..++.|.+.++... .....+.........|++.|... .++++- +....|...
T Consensus 83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~-~~dg~i~iw 159 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ--NVLLSA-GCDNVILVW 159 (402)
T ss_dssp CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT--TEEEEE-ETTSCEEEE
T ss_pred CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC--CEEEEE-cCCCEEEEE
Confidence 45667777645667777777899999997654 22222233335688999999853 344443 244678777
Q ss_pred ecCCCCcEEEE--ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEe
Q psy17325 223 GMDGSNRSTII--STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKAN 300 (461)
Q Consensus 223 ~~dG~~~~~i~--~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~ 300 (461)
++........+ .........+++.+.+..|+.+.... .|...+
T Consensus 160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------~i~iwd 204 (402)
T 2aq5_A 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK-----------------------------------RVRVIE 204 (402)
T ss_dssp ETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS-----------------------------------EEEEEE
T ss_pred ECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC-----------------------------------cEEEEe
Confidence 77654333233 22334567889988666666554332 355555
Q ss_pred CCCCceEEEE-eCC--e-eeeEEEeccCCeEEEee--cCceeeEEEeecCCCCceEEEeecCCCe--EEEeeCCCCCcee
Q psy17325 301 MDGSNASILV-SGQ--L-YEALALDLENGMLYYST--LKCTRWLFWTDWGENPRIERIGMDGSNR--STIISTKIYWPNG 372 (461)
Q Consensus 301 ~~g~~~~~l~-~~~--~-p~~iavd~~~~~lY~t~--~~~~~~l~~~d~~~~~~I~~~~~dG~~~--~~l~~~~l~~p~g 372 (461)
+........+ ... . +..+++.|.+..|+... .. .+.|...++..... .......-.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 205 PRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS------------ERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp TTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC------------CEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred CCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC------------CceEEEEcCccccCCceEEeccCCCceeE
Confidence 5433322222 211 1 57788887544333321 22 34455555433221 1222134456788
Q ss_pred EEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 373 LTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 373 laiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
+++++.+..||++-...+.|...++.
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 99998889999887777889999984
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.027 Score=54.21 Aligned_cols=197 Identities=11% Similarity=0.055 Sum_probs=118.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
.+..+++.+.+.+++++-..++.|.+.++.+......+. ..-....++++.|..+ +.|+.+. ....|...++.+.
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~--~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-NQLFVSS--IRGATTLRDFSGS 151 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-EEEEEEE--TTTEEEEEETTSC
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-CEEEEEe--CCCEEEEEECCCC
Confidence 455677776553666666678899999988665554443 2334578899988533 1444443 4467888888874
Q ss_pred CcEEEEecc--cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 228 NRSTIISTK--IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 228 ~~~~i~~~~--~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
....+.... ......+++.+.+..|+.+.... .|...++++..
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------~i~i~d~~~~~ 196 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG-----------------------------------RLLLLGLDGHE 196 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTS-----------------------------------EEEEEETTSCE
T ss_pred ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCC-----------------------------------CEEEEECCCCE
Confidence 444333221 13467899988777666555432 46666666655
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC----CCeEEEeeCCCCCceeEEEec-CC
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG----SNRSTIISTKIYWPNGLTLDI-AT 379 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG----~~~~~l~~~~l~~p~glaiD~-~~ 379 (461)
...+..... ...+++.|.+..++++-.. .+.|...++.. ....... ..-.....|++++ .+
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSV------------DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS 263 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEET------------TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeC------------CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC
Confidence 554443223 8899999877745554443 34454444432 1111122 3445678899987 44
Q ss_pred CeEEEEcCCCCeEEEEEec
Q psy17325 380 RRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 380 ~~ly~~d~~~~~I~~~~~~ 398 (461)
..|+.+ ...+.|...++.
T Consensus 264 ~~l~~~-~~d~~i~iwd~~ 281 (383)
T 3ei3_B 264 TKLLTT-DQRNEIRVYSSY 281 (383)
T ss_dssp CEEEEE-ESSSEEEEEETT
T ss_pred CEEEEE-cCCCcEEEEECC
Confidence 455544 456788888883
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.48 E-value=0.018 Score=56.84 Aligned_cols=199 Identities=10% Similarity=0.012 Sum_probs=121.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-------EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-------IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-------~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
.+.++++.+.+..++++-...+.|.+.++..... ..........+..+++.|..+ .+|.+. +....|...
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--~~l~s~-~~dg~i~i~ 259 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE--SLFGSV-ADDQKLMIW 259 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT--TEEEEE-ETTSEEEEE
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC--CEEEEE-eCCCeEEEE
Confidence 4566777766665777778889999999875211 112222334578899999666 677776 455688888
Q ss_pred ecCCCC---cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 223 GMDGSN---RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 223 ~~dG~~---~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
++.... ....+...-..++.|++.+.+..++++-...+ .|...
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg----------------------------------~v~vw 305 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK----------------------------------TVALW 305 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS----------------------------------EEEEE
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC----------------------------------eEEEE
Confidence 876431 22222333456788999987777776655543 34555
Q ss_pred eCCC--CceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-------------CCeEEEe
Q psy17325 300 NMDG--SNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-------------SNRSTII 363 (461)
Q Consensus 300 ~~~g--~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-------------~~~~~l~ 363 (461)
++.. .....+..... ...|++.|.+..++.+... .+.|...++.. .......
T Consensus 306 d~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT------------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp ETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET------------TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred eCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC------------CCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 5443 22233322222 7889999988777777655 34444444332 1122222
Q ss_pred -eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 364 -STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 364 -~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
...-..+..+++.+.+..++++-...+.|...++
T Consensus 374 ~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 1334568999998766657777666777777777
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.14 Score=54.52 Aligned_cols=195 Identities=8% Similarity=0.010 Sum_probs=108.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC-C
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS-N 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~-~ 228 (461)
.+..+++.+.+..|..... .+.|.+.+.........+.........+++.|... +|..+. ....|...+++.. .
T Consensus 57 ~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~--~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGS--DDLTVKLWNWENNWA 131 (814)
T ss_dssp CEEEEEEEGGGTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEE--TTSEEEEEEGGGTSE
T ss_pred cEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC--EEEEEc--CCCEEEEEECCCCce
Confidence 4567788876666665544 78999999765544444444445688999999866 777655 3457777777754 2
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-eE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-AS 307 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-~~ 307 (461)
....+...-.....+++.+..+.++++-...+ .|...++.... ..
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------------------------------~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR----------------------------------TVKVWSLGQSTPNF 177 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTS----------------------------------EEEEEETTCSSCSE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCccee
Confidence 22333333445678888873443433333222 35555554333 22
Q ss_pred EEEeCC-e-eeeEEEec--cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEE
Q psy17325 308 ILVSGQ-L-YEALALDL--ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 308 ~l~~~~-~-p~~iavd~--~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly 383 (461)
.+.... . ...+++.| .+..|+.... .+.|...++........+.........+++.+.+..|+
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-------------dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASD-------------DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECT-------------TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeC-------------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 332222 2 66777777 4444444332 34454444433322222223445566778875544444
Q ss_pred EEcCCCCeEEEEEe
Q psy17325 384 FADSKLDFIDFCNY 397 (461)
Q Consensus 384 ~~d~~~~~I~~~~~ 397 (461)
.. ...+.|...++
T Consensus 245 ~~-~~dg~v~vwd~ 257 (814)
T 3mkq_A 245 SG-SEDGTLKIWNS 257 (814)
T ss_dssp EE-ETTSCEEEEET
T ss_pred EE-eCCCeEEEEEC
Confidence 44 34466777776
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.047 Score=55.90 Aligned_cols=205 Identities=12% Similarity=0.001 Sum_probs=111.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCC----cEEEEecCCCCC-ceeEEEcC--CCCceEEEEeecCCCCcEEEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGT----NRIVLAKDNITQ-PRGMMLDP--SPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~----~~~~l~~~~~~~-p~~ia~d~--~~g~~~ly~td~~~~~~I~~~ 222 (461)
.+..+++++.++.|.... .+.|.+.+++.. .....+...-.. ...+++.| ... +|+.+. ....|...
T Consensus 20 ~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~--~dg~v~vw 93 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCSGD--ESGKVIVW 93 (615)
T ss_dssp CCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC--EEEEEE--TTSEEEEE
T ss_pred ceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC--EEEEec--CCCEEEEE
Confidence 456788888777777766 578999987744 333333333345 78999999 755 666655 34566666
Q ss_pred ecC-C------C-CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 223 GMD-G------S-NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 223 ~~d-G------~-~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
++. | . .....+...-.....+++.+.++.|+.+....+.. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~-------------------------------~ 142 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNF-------------------------------G 142 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCS-------------------------------E
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCc-------------------------------c
Confidence 663 2 1 11112222334577899998887777765443110 1
Q ss_pred eeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCC---Cc
Q psy17325 295 KIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY---WP 370 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~---~p 370 (461)
.|...+ .+.....+..... ...+++.|.+..++++-.. .+.|...++........+...-. ..
T Consensus 143 ~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v 209 (615)
T 1pgu_A 143 VFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTHHKQGSFV 209 (615)
T ss_dssp EEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred EEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeC------------CCcEEEEeCCCcceeeeecccCCCCceE
Confidence 233322 1221222211111 7788888877645544433 33444433332222222212233 56
Q ss_pred eeEEEecC-CCeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 371 NGLTLDIA-TRRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 371 ~glaiD~~-~~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
..+++.+. +..|+.+ ...+.|...++. ++.....
T Consensus 210 ~~~~~~~~~~~~l~~~-~~dg~i~vwd~~-~~~~~~~ 244 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITV-GSDRKISCFDGK-SGEFLKY 244 (615)
T ss_dssp EEEEECSTTCCEEEEE-ETTCCEEEEETT-TCCEEEE
T ss_pred EEEEECCCCCCEEEEE-eCCCeEEEEECC-CCCEeEE
Confidence 78899876 4445544 446788888873 4554333
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.088 Score=50.25 Aligned_cols=197 Identities=12% Similarity=-0.006 Sum_probs=110.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+. ++...+-..++.|.+.++........+...-.....+++.+... .++.+- +....|...++.....
T Consensus 129 ~V~~v~~spd-g~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~l~s~-s~D~~v~iwd~~~~~~ 204 (344)
T 4gqb_B 129 IVSTVSVLSS-GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD--SVFLSC-SEDNRILLWDTRCPKP 204 (344)
T ss_dssp CEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT--TEEEEE-ETTSCEEEEETTSSSC
T ss_pred CEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC--Cceeee-ccccccccccccccce
Confidence 4567788764 44555666678999999876554444444445678899988765 677665 3446777777653332
Q ss_pred -EEEEe-cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC-Cce
Q psy17325 230 -STIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SNA 306 (461)
Q Consensus 230 -~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~~ 306 (461)
..+.. ..-..+..+++.+.+++++.+-...+ .|...++.. +..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg----------------------------------~v~~wd~~~~~~~ 250 (344)
T 4gqb_B 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG----------------------------------TVSLVDTKSTSCV 250 (344)
T ss_dssp EEECC----CCCEEEEEECSSCTTEEEEEETTS----------------------------------EEEEEESCC--CC
T ss_pred eeeeecceeeccceeeeecCCCCcceEEeccCC----------------------------------cEEEEECCCCcEE
Confidence 22221 12234677888877777766544432 344444432 222
Q ss_pred EEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 307 SILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 307 ~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
..+..... ...|++.|.+..+..+-+. .+.|...++.......+. ..-....+|++.+.+++|..+
T Consensus 251 ~~~~~h~~~v~~v~fsp~g~~~lasgs~------------D~~i~vwd~~~~~~~~~~-~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 251 LSSAVHSQCVTGLVFSPHSVPFLASLSE------------DCSLAVLDSSLSELFRSQ-AHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEET------------TSCEEEECTTCCEEEEEC-CCSSCEEEEEECSSSTTEEEE
T ss_pred EEEcCCCCCEEEEEEccCCCeEEEEEeC------------CCeEEEEECCCCcEEEEc-CCCCCEEEEEEeCCCCeEEEE
Confidence 33322122 7888898877655554433 334444444333222221 333456788888777777665
Q ss_pred cCCCCeEEEEEe
Q psy17325 386 DSKLDFIDFCNY 397 (461)
Q Consensus 386 d~~~~~I~~~~~ 397 (461)
-...++|..-++
T Consensus 318 ~s~D~~v~~w~v 329 (344)
T 4gqb_B 318 VGWDHQVVHHVV 329 (344)
T ss_dssp EETTSCEEEEEC
T ss_pred EcCCCeEEEEEC
Confidence 444455655555
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0091 Score=63.06 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=53.3
Q ss_pred eeeeEEeCCCCceEEEEeCC---e----eeeEEEeccCCeEEEe-ecCceeeEEEeecCCCCceEEEe-ecCCC---eEE
Q psy17325 294 LKIGKANMDGSNASILVSGQ---L----YEALALDLENGMLYYS-TLKCTRWLFWTDWGENPRIERIG-MDGSN---RST 361 (461)
Q Consensus 294 ~~I~~~~~~g~~~~~l~~~~---~----p~~iavd~~~~~lY~t-~~~~~~~l~~~d~~~~~~I~~~~-~dG~~---~~~ 361 (461)
..|...++++.....+.... . +..+++.|.+..|+++ ... .+ +.....+|+..+ .++.. .+.
T Consensus 280 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~-----~~~~~~~l~~~d~~~~~~~~~~~~ 353 (723)
T 1xfd_A 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP-QG-----GRGKFYHITVSSSQPNSSNDNIQS 353 (723)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC-CS-----SSSCEEEEEEECSSCCSSSCCCCB
T ss_pred EEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc-cC-----CCcceeEEEEEeccCCCCccceeE
Confidence 35777777665544443221 1 1478888888777764 222 00 000022577776 45554 333
Q ss_pred EeeCCCCCceeEEEecCCCeEEEEcC----CCCeEEEEEe
Q psy17325 362 IISTKIYWPNGLTLDIATRRVYFADS----KLDFIDFCNY 397 (461)
Q Consensus 362 l~~~~l~~p~glaiD~~~~~ly~~d~----~~~~I~~~~~ 397 (461)
+..........++++++++.||++-. ..-.|+++++
T Consensus 354 l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 33112221223689989999988643 3456888887
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=7.6e-05 Score=64.35 Aligned_cols=45 Identities=36% Similarity=0.896 Sum_probs=39.2
Q ss_pred ceecCcceecCC-c---ccCceeeccCCccccCCCCeeeeCCCCceeec
Q psy17325 67 TCQDMNECEQPG-Y---CSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111 (461)
Q Consensus 67 ~C~d~~eC~~~~-~---C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~ 111 (461)
.|.+++||.... . |++.|.|+.++|.|.|++||.|..++++|.++
T Consensus 120 ~~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp EEEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred eccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence 577899998443 3 99999999999999999999999999999764
|
| >1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.3e-05 Score=56.29 Aligned_cols=46 Identities=30% Similarity=0.886 Sum_probs=38.9
Q ss_pred cCcceecC-Ccc-cCceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 70 DMNECEQP-GYC-SQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 70 d~~eC~~~-~~C-~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
+++||... ..| .+.|.++.++|.|.|++||.+..+++.|.+++++.
T Consensus 2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~ 49 (87)
T 1z6c_A 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS 49 (87)
T ss_dssp CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHH
T ss_pred ccccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeC
Confidence 67889743 348 45899999999999999999988889999888875
|
| >3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00025 Score=67.61 Aligned_cols=58 Identities=28% Similarity=0.701 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCC--CCCcccCC-CCCCCCCceeCCCCceEeCCCCCeecCCCCceecCccee
Q psy17325 17 DCPNGADEGPGC--DLAECKHK-FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 17 dC~dg~de~~~C--~~~~C~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
.|+.|+. +..| +++||... +..|.+.|.+..++|.|.|++||.+..++..|.+.++|.
T Consensus 29 ~C~~g~~-g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~c~ 89 (317)
T 3h5c_B 29 TCSPGYE-GSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89 (317)
T ss_dssp CCSSSCC-SSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECSSCC
T ss_pred ECCCCCc-CCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccccccc
Confidence 4666664 4678 58899863 368999999999999999999999888889999988873
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.026 Score=53.46 Aligned_cols=96 Identities=10% Similarity=0.104 Sum_probs=61.9
Q ss_pred ceeeeeeeecCCeEEEEeC--------CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC---CCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDS--------RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG---ENPR 218 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~--------~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~---~~~~ 218 (461)
.+..+++ .++.|+++-. ....|.+.++++.....+ .....+++.|... +|+++... ....
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~--~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----ENATMPRISPDGK--KIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----ESCEEEEECTTSS--EEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----ccCCCeEECCCCC--EEEEEEeccCCCcce
Confidence 3444555 3566655421 145688888887665555 3467789999866 77766532 2356
Q ss_pred EEEEecCCCCcEEEEecccccceeEEeeccCCeeEEec
Q psy17325 219 IERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 219 I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
|+.+++++.....+..... ...+++.+.++.|+++.
T Consensus 87 l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~ 122 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVG 122 (347)
T ss_dssp EEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEE
Confidence 9999988765555544322 67888888888888874
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.017 Score=64.15 Aligned_cols=221 Identities=10% Similarity=0.012 Sum_probs=127.7
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCC----------CCCceeEEEc-CCCCceEEEEeecCCCCcEEE
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDN----------ITQPRGMMLD-PSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~----------~~~p~~ia~d-~~~g~~~ly~td~~~~~~I~~ 221 (461)
.+++.+.++.|.++. .+.|.+.++.+.....+.... ...+..+++. |... +|.++. ...|+.
T Consensus 249 ~~~~SpDG~~la~~~--~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~--~la~~~---~~~i~~ 321 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD--LIAFVS---RGQAFI 321 (1045)
T ss_dssp EEEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG--CEEEEE---TTEEEE
T ss_pred eeeEcCCCCEEEEEe--CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCC--EEEEEE---cCEEEE
Confidence 446666666666653 567888887554443222110 0136788898 8744 666554 347777
Q ss_pred EecCCCCcEEEEecccc-cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee-EE
Q psy17325 222 IGMDGSNRSTIISTKIY-WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG-KA 299 (461)
Q Consensus 222 ~~~dG~~~~~i~~~~~~-~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~-~~ 299 (461)
.++++.....+. .... .+..+++. .++.|+++.. . ..|. ..
T Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~~~s-dg~~l~~~s~-~----------------------------------~~l~~~~ 364 (1045)
T 1k32_A 322 QDVSGTYVLKVP-EPLRIRYVRRGGD-TKVAFIHGTR-E----------------------------------GDFLGIY 364 (1045)
T ss_dssp ECTTSSBEEECS-CCSCEEEEEECSS-SEEEEEEEET-T----------------------------------EEEEEEE
T ss_pred EcCCCCceEEcc-CCCcceEEeeeEc-CCCeEEEEEC-C----------------------------------CceEEEE
Confidence 777754433221 1112 34455665 5555665443 1 2466 66
Q ss_pred eCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecC
Q psy17325 300 NMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIA 378 (461)
Q Consensus 300 ~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~ 378 (461)
++++...+.+..... +..+++.|.+..|+++.. .+.|+..++++.....+.........++++.++
T Consensus 365 d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-------------~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 365 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-------------RFEIMTVDLETGKPTVIERSREAMITDFTISDN 431 (1045)
T ss_dssp ETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-------------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred ECCCCCceEecCCccceeeeEECCCCCEEEEECC-------------CCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence 666665554442222 788999998888776543 346777777665555555344445588999988
Q ss_pred CCeEEEEcCC---------CCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCC
Q psy17325 379 TRRVYFADSK---------LDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEG 442 (461)
Q Consensus 379 ~~~ly~~d~~---------~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~ 442 (461)
+.+|.++... ...|...++ .+.....+....... ...+++.++.+|||+...
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~--~~g~~~~l~~~~~~~----------~~~~~spdG~~l~~~s~~ 492 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDM--EGRKIFAATTENSHD----------YAPAFDADSKNLYYLSYR 492 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEET--TTTEEEECSCSSSBE----------EEEEECTTSCEEEEEESC
T ss_pred CCeEEEEecCccccccCCCCCeEEEEEC--CCCcEEEeeCCCccc----------CCceEcCCCCEEEEEecc
Confidence 8888887442 257888888 343323222211111 134555667788887653
|
| >2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=1.5e-05 Score=70.04 Aligned_cols=36 Identities=36% Similarity=0.678 Sum_probs=29.3
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFG 38 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~~~~C~~~~~ 38 (461)
+++|||.+|+|||..||.||+|| ..|....|.+..+
T Consensus 66 ~g~CIp~~~~CDG~~DC~DgSDE-~~C~~~~C~~~~F 101 (215)
T 2gtl_O 66 DPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKF 101 (215)
T ss_dssp SCCEEEGGGTTSSSCCSSSCHHH-HCCCCSSCTTCEE
T ss_pred CCcCccccccCCCCCcCCCcccc-cCCCCCCcCCCce
Confidence 57999999999999999999999 5676555554443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.1 Score=49.12 Aligned_cols=198 Identities=10% Similarity=0.082 Sum_probs=114.6
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
...+++.+ .+.+..+-..++.|.+.++........+.........+++.|... +|.... ....|...++......
T Consensus 83 v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~g~--~dg~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 83 VVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ--YLATGT--HVGKVNIFGVESGKKE 157 (321)
T ss_dssp EEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS--EEEEEC--TTSEEEEEETTTCSEE
T ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC--EEEEEc--CCCcEEEEEcCCCcee
Confidence 34455543 344566667788999999875554444444435577899999865 655443 4467777777655444
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
..+...-.....+++.+.++.|..+.... .|...++........+
T Consensus 158 ~~~~~~~~~v~~~~~spdg~~lasg~~dg-----------------------------------~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSPDGKYLASGAIDG-----------------------------------IINIFDIATGKLLHTL 202 (321)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTS-----------------------------------CEEEEETTTTEEEEEE
T ss_pred EEecCCCceEEEEEECCCCCEEEEEcCCC-----------------------------------eEEEEECCCCcEEEEE
Confidence 33443344567888988766666554332 3445554433222222
Q ss_pred eCC-e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCC
Q psy17325 311 SGQ-L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 388 (461)
Q Consensus 311 ~~~-~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~ 388 (461)
... . ...+++.|.+..|..+. . .+.|...++........+...-.....|++.+.+..|+-+ ..
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s-~------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~-s~ 268 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTAS-D------------DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS-SS 268 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEEC-T------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ET
T ss_pred cccCCceeEEEEcCCCCEEEEEc-C------------CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEE-eC
Confidence 222 2 78899998766554432 2 3445555554433333332445567889998665555544 45
Q ss_pred CCeEEEEEecCCCCe
Q psy17325 389 LDFIDFCNYDGTGRQ 403 (461)
Q Consensus 389 ~~~I~~~~~~g~g~~ 403 (461)
.+.|...++. ++..
T Consensus 269 D~~v~iwd~~-~~~~ 282 (321)
T 3ow8_A 269 DKSVKVWDVG-TRTC 282 (321)
T ss_dssp TSCEEEEETT-TTEE
T ss_pred CCcEEEEeCC-CCEE
Confidence 6788888882 4444
|
| >1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* | Back alignment and structure |
|---|
Probab=97.35 E-value=7e-05 Score=65.65 Aligned_cols=55 Identities=25% Similarity=0.692 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCC--C-CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCc
Q psy17325 17 DCPNGADEGPGCD--L-AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMN 72 (461)
Q Consensus 17 dC~dg~de~~~C~--~-~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~ 72 (461)
.|+.|+. +..|. + ++|...+..|.+.|.+.+++|.|.|++||.+..++..|+++.
T Consensus 66 ~C~~Gf~-G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~ 123 (195)
T 1nfu_B 66 TCLEGFE-GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123 (195)
T ss_dssp ----------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred eCCCCce-eccccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccCC
Confidence 4666653 46784 4 789887788999999999999999999999988899998774
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.13 Score=49.85 Aligned_cols=198 Identities=10% Similarity=-0.008 Sum_probs=113.3
Q ss_pred eeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC-CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE
Q psy17325 154 LAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD-NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI 232 (461)
Q Consensus 154 iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~-~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i 232 (461)
.+++|..+++.. -...+.|.+.+.+......+... .-.....+++.|... +|+.+. ....|...++........
T Consensus 97 ~~~~~s~~~l~~-~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~--~dg~i~iwd~~~~~~~~~ 171 (401)
T 4aez_A 97 NLLDWSNLNVVA-VALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGS--FLSVGL--GNGLVDIYDVESQTKLRT 171 (401)
T ss_dssp BCEEECTTSEEE-EEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSS--EEEEEE--TTSCEEEEETTTCCEEEE
T ss_pred EEEeecCCCEEE-EECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCC--EEEEEC--CCCeEEEEECcCCeEEEE
Confidence 346665555544 34567888888765554444433 334578999999755 666665 345777777765443333
Q ss_pred EecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC-Cc-eEEEE
Q psy17325 233 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG-SN-ASILV 310 (461)
Q Consensus 233 ~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g-~~-~~~l~ 310 (461)
+.........++++ ...|+.+... +.|...++.. .. ...+.
T Consensus 172 ~~~~~~~v~~~~~~--~~~l~~~~~d-----------------------------------g~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 172 MAGHQARVGCLSWN--RHVLSSGSRS-----------------------------------GAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETT-----------------------------------SEEEEEETTSSSCEEEEEE
T ss_pred ecCCCCceEEEEEC--CCEEEEEcCC-----------------------------------CCEEEEecccCcceeeEEc
Confidence 33333345556554 3444433332 2355555552 22 22222
Q ss_pred eCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC--
Q psy17325 311 SGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS-- 387 (461)
Q Consensus 311 ~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~-- 387 (461)
.... ..++++.|.+..|+.+.. .+.|...++............-.....|++.+.+..|+.+-.
T Consensus 215 ~~~~~v~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 215 GHSSEVCGLAWRSDGLQLASGGN-------------DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET-------------TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred CCCCCeeEEEEcCCCCEEEEEeC-------------CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence 2222 788999986555554332 345555555543333333245556789999887888888754
Q ss_pred CCCeEEEEEecCCCCeEEEE
Q psy17325 388 KLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 388 ~~~~I~~~~~~g~g~~~~~~ 407 (461)
..+.|...++. ++.....+
T Consensus 282 ~d~~i~i~d~~-~~~~~~~~ 300 (401)
T 4aez_A 282 MDKQIHFWNAA-TGARVNTV 300 (401)
T ss_dssp TTCEEEEEETT-TCCEEEEE
T ss_pred CCCEEEEEECC-CCCEEEEE
Confidence 57889999984 45544433
|
| >2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... | Back alignment and structure |
|---|
Probab=97.33 E-value=8.1e-05 Score=61.41 Aligned_cols=56 Identities=25% Similarity=0.676 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCC--C-CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcc
Q psy17325 17 DCPNGADEGPGCD--L-AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNE 73 (461)
Q Consensus 17 dC~dg~de~~~C~--~-~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~e 73 (461)
.|+.|+. +..|. + ++|...+..|.+.|.+.+++|.|.|++||.+..++..|+++++
T Consensus 66 ~C~~G~~-G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~~ 124 (134)
T 2vh0_B 66 TCLEGFE-GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124 (134)
T ss_dssp ----------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred eCCCCcc-CCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCCC
Confidence 3555553 35674 4 7898777789999999999999999999999888999988754
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=69.05 Aligned_cols=46 Identities=26% Similarity=0.618 Sum_probs=41.3
Q ss_pred CCcccCC-CCCCCCCceeCCCCceEeCCCCCeecCCCCceecCccee
Q psy17325 30 LAECKHK-FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 30 ~~~C~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
.+||..+ ++.|.+.|.++.++|.|.|.+||.+..++.+|.+.++|.
T Consensus 2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~ 48 (283)
T 3f1s_B 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 48 (283)
T ss_dssp -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence 5789877 899999999999999999999999999999999888873
|
| >2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=6.3e-05 Score=65.55 Aligned_cols=28 Identities=43% Similarity=0.898 Sum_probs=24.4
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC-CCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG-PGCD 29 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~-~~C~ 29 (461)
+++||+..|+|||..||+||+||. ..|.
T Consensus 64 ~g~CIp~~wvCDG~~DC~DGSDE~~~~C~ 92 (220)
T 2gtl_N 64 EQECISDLLVCDGHKDCHNAHDEDPDVCD 92 (220)
T ss_dssp SCCEEETTTTTSSSCCSTTCTTSCGGGGC
T ss_pred CCcEeCcceecCCCCCCCCCCccCcccCC
Confidence 478999999999999999999995 3564
|
| >3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=68.27 Aligned_cols=46 Identities=35% Similarity=0.769 Sum_probs=39.1
Q ss_pred cCcceec--CCcccCceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 70 DMNECEQ--PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 70 d~~eC~~--~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
++|||.. +++|+|.|.++.++|.|+|+.||.+..+.++|.+.+++.
T Consensus 1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~ 48 (283)
T 3f1s_B 1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 48 (283)
T ss_dssp --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence 3688974 589999999999999999999999999999998876543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.034 Score=53.83 Aligned_cols=203 Identities=9% Similarity=0.019 Sum_probs=116.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc------EEEEe---cCCCCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN------RIVLA---KDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~------~~~l~---~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
.+..+++.+.+++++++-..++.|.+.++.... ..... .........+++.|..+ .++++- .....|.
T Consensus 115 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~-~~dg~v~ 191 (416)
T 2pm9_A 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA--HVFASA-GSSNFAS 191 (416)
T ss_dssp CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT--TEEEEE-SSSSCEE
T ss_pred ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC--cEEEEE-cCCCCEE
Confidence 456677776656777777778999999987654 22111 12234578899999844 455554 3456788
Q ss_pred EEecCCCCcEEEEecc------cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 221 RIGMDGSNRSTIISTK------IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~------~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
..++........+... ......+++.+.+..++++-...+. .+
T Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-------------------------------~~ 240 (416)
T 2pm9_A 192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-------------------------------DP 240 (416)
T ss_dssp EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-------------------------------SC
T ss_pred EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-------------------------------Cc
Confidence 8887754333223222 3457788998876555544333210 00
Q ss_pred eeeEEeCCCC-c-eEEEE-eCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc
Q psy17325 295 KIGKANMDGS-N-ASILV-SGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370 (461)
Q Consensus 295 ~I~~~~~~g~-~-~~~l~-~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p 370 (461)
.|...++... . ...+. .... +..+++.|..+.++++-.. .+.|...++........+...-...
T Consensus 241 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------------dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 241 SILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR------------DNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp CCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES------------SSEEEEECSSSCCEEEEEECSSSCC
T ss_pred eEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC------------CCCEEEeeCCCCccceeecCCCCce
Confidence 2444444432 1 22222 1112 7888998845555544443 3455555544333322222444567
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
..+++.+.+.+++++-...+.|...++.
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 8899987665677776667888888883
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.14 Score=49.35 Aligned_cols=196 Identities=9% Similarity=-0.061 Sum_probs=107.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+.+..|+ +-..++.|.+.+.+|.....+.. .......+++.|... +|+.+. ....|...++.....
T Consensus 110 ~v~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~--~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIV-TGVENGELRLWNKTGALLNVLNF-HRAPIVSVKWNKDGT--HIISMD--VENVTILWNVISGTV 183 (425)
T ss_dssp CEEEEEECTTSSEEE-EEETTSCEEEEETTSCEEEEECC-CCSCEEEEEECTTSS--EEEEEE--TTCCEEEEETTTTEE
T ss_pred ceEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCeeeeccC-CCccEEEEEECCCCC--EEEEEe--cCCeEEEEECCCCcE
Confidence 456677776444444 44556889999988876665543 335678999999866 777665 345777777754332
Q ss_pred EEEEeccccc---------------ceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 230 STIISTKIYW---------------PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 230 ~~i~~~~~~~---------------P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
...+...... ...+++.+ .+.++.+.. . +
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~----------------------------------g 227 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVD-DDKFVIPGP-K----------------------------------G 227 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEE-TTEEEEECG-G----------------------------------G
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcC-CCEEEEEcC-C----------------------------------C
Confidence 2222211111 44555554 233333322 2 2
Q ss_pred eeeEEeCCCCceEEEEeCC-e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCcee
Q psy17325 295 KIGKANMDGSNASILVSGQ-L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG 372 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~~~~-~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~g 372 (461)
.|...++........+... . ...+++.|.+..|+.+.. .+.|...++........+...-.....
T Consensus 228 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-------------DGTLRIWHGGNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp CEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-------------TSCEEEECSSSBSCSEEECCCSSCEEE
T ss_pred eEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-------------CCEEEEEECCCCccceEecCCCccEEE
Confidence 3555555443322222222 2 778899987765555432 345555554433322223234456778
Q ss_pred EEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 373 LTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 373 laiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
+++.+.+ ++++-...+.|...++. ++..
T Consensus 295 ~~~~~~~--~l~~~~~d~~i~i~d~~-~~~~ 322 (425)
T 1r5m_A 295 ASWVGDD--KVISCSMDGSVRLWSLK-QNTL 322 (425)
T ss_dssp EEEETTT--EEEEEETTSEEEEEETT-TTEE
T ss_pred EEECCCC--EEEEEeCCCcEEEEECC-CCcE
Confidence 8887554 45555566788888883 4443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.25 E-value=0.14 Score=48.47 Aligned_cols=201 Identities=9% Similarity=0.062 Sum_probs=110.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
+..+++.+.+ ++.++-...+.|.+.++++.. ....+...-.....|++.|... +|+.+. ....|...++....
T Consensus 11 i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~--~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 11 ISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCG--TDRNAYVWTLKGRT 85 (372)
T ss_dssp CCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEE--TTSCEEEEEEETTE
T ss_pred eEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCC--EEEEEc--CCCeEEEEECCCCe
Confidence 4556776544 444455557889999987764 2223333335678999999766 666555 34567777765443
Q ss_pred cEEEE--ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-
Q psy17325 229 RSTII--STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN- 305 (461)
Q Consensus 229 ~~~i~--~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~- 305 (461)
..... ......+..+++.+.+..|+.+.... .|...+++...
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------~v~i~d~~~~~~ 130 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----------------------------------VISICYFEQEND 130 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----------------------------------SEEEEEEETTTT
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----------------------------------EEEEEEecCCCc
Confidence 22221 22234577889988777776665432 23333333222
Q ss_pred ---eEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-------------------CCCeEE
Q psy17325 306 ---ASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-------------------GSNRST 361 (461)
Q Consensus 306 ---~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-------------------G~~~~~ 361 (461)
...+..... +..+++.|.+..|+.+... +.|...++. +.....
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------------CCEEEEEcccccccccccccccccccchhhheEe
Confidence 111111111 7888998866655544332 233333321 221222
Q ss_pred EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 362 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 362 l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
+. ..-.....+++++.+..|+.+ ...+.|...++. ++.....+
T Consensus 198 ~~-~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~-~~~~~~~~ 240 (372)
T 1k8k_C 198 SS-SSCGWVHGVCFSANGSRVAWV-SHDSTVCLADAD-KKMAVATL 240 (372)
T ss_dssp CC-CCSSCEEEEEECSSSSEEEEE-ETTTEEEEEEGG-GTTEEEEE
T ss_pred cC-CCCCeEEEEEECCCCCEEEEE-eCCCEEEEEECC-CCceeEEE
Confidence 21 334467889998766666655 456788888884 45554443
|
| >2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=7.6e-05 Score=62.66 Aligned_cols=56 Identities=32% Similarity=0.673 Sum_probs=45.6
Q ss_pred CCCCCCCCCC--CCCCC-CCCcccCCCCCCCC-CceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 14 GKTDCPNGAD--EGPGC-DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 14 ~~~dC~dg~d--e~~~C-~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
-...|+.|+. .+..| +++||...+..|.+ .|++++++|.|.|++||.+..++++|.
T Consensus 88 ~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~ 147 (147)
T 2w86_A 88 VDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147 (147)
T ss_dssp CCTTTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred CcccCCCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence 3447998883 34678 68999877777875 799999999999999999888888773
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.11 Score=49.94 Aligned_cols=193 Identities=6% Similarity=-0.107 Sum_probs=106.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCC---------------ceeEEEcCCCCceEEEEeecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQ---------------PRGMMLDPSPGTRWLFWTDWG 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~---------------p~~ia~d~~~g~~~ly~td~~ 214 (461)
.+..+++.+.+..|+.+ ...+.|.+.++........+...... ...+++.+. + .++...
T Consensus 151 ~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-- 224 (425)
T 1r5m_A 151 PIVSVKWNKDGTHIISM-DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-D--KFVIPG-- 224 (425)
T ss_dssp CEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-T--EEEEEC--
T ss_pred cEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-C--EEEEEc--
Confidence 45667777655555544 44688888888655443333322122 667777765 4 444433
Q ss_pred CCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcce
Q psy17325 215 ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPL 294 (461)
Q Consensus 215 ~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~ 294 (461)
....|...++........+.........+++.+.+..|+.+....
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----------------------------------- 269 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG----------------------------------- 269 (425)
T ss_dssp GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS-----------------------------------
T ss_pred CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC-----------------------------------
Confidence 346788777775443333333344567888888666665554332
Q ss_pred eeeEEeCCCCc-eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCcee
Q psy17325 295 KIGKANMDGSN-ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG 372 (461)
Q Consensus 295 ~I~~~~~~g~~-~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~g 372 (461)
.|...++.... ...+..... ...+++.|.+ ++++-.. .+.|...++........+...-..+..
T Consensus 270 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~i~~ 335 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCSM------------DGSVRLWSLKQNTLLALSIVDGVPIFA 335 (425)
T ss_dssp CEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEET------------TSEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred EEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEeC------------CCcEEEEECCCCcEeEecccCCccEEE
Confidence 24444443322 222221122 7788888765 4443333 445555555433333333244456788
Q ss_pred EEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 373 LTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 373 laiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
+++.+.+..|+.+ ...+.|...++.
T Consensus 336 ~~~s~~~~~l~~~-~~dg~i~i~~~~ 360 (425)
T 1r5m_A 336 GRISQDGQKYAVA-FMDGQVNVYDLK 360 (425)
T ss_dssp EEECTTSSEEEEE-ETTSCEEEEECH
T ss_pred EEEcCCCCEEEEE-ECCCeEEEEECC
Confidence 9998665555555 445778888873
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.035 Score=58.52 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=119.8
Q ss_pred eeeeeeeecCCeEEEEeCC--------CCeEEEEeCCCCcEEEEecCC--CCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 151 VEGLAYDWIGGHIYWLDSR--------LNRIEVCDENGTNRIVLAKDN--ITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~--------~~~I~~~~~~G~~~~~l~~~~--~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
+..+++.+.++.|.++... .+.|.+.++++...+.+.... -..+..+++.|... +|.++. . ..|+
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~--~la~~~-~--~~i~ 137 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ--QLIFIF-E--NNIY 137 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT--CEEEEE-T--TEEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC--EEEEEE-C--CeEE
Confidence 5677888777777666432 267889998776554443321 11266788998865 666655 2 4799
Q ss_pred EEecCCCCcEEEEecccc------------------cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEE
Q psy17325 221 RIGMDGSNRSTIISTKIY------------------WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKL 282 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~~~------------------~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~ 282 (461)
..++++.....+...... .+.++++.+.++.|+++......+..........-.... .+.+
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPT-VKPY 216 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCC-CEEE
T ss_pred EEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCc-ceec
Confidence 999887665555443211 236789998888887764322111100000000000000 0111
Q ss_pred EEEecCCCCcceeeeEEeCCCCce-EEEEeC------Ce-eeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEe
Q psy17325 283 YWIDEGGNGVPLKIGKANMDGSNA-SILVSG------QL-YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIG 353 (461)
Q Consensus 283 yw~d~~~~~~~~~I~~~~~~g~~~-~~l~~~------~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~ 353 (461)
.|...+...-...|.+.++++... ..+... .. ...+++.|.+..|+.+ ++.+ ....|+..+
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~----------~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW----------LNRAQNVSILTLCD 286 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE----------EETTSCEEEEEEEE
T ss_pred cCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE----------EcCCCCeEEEEEEe
Confidence 111111111113567777766553 333221 11 4567788766544322 2211 124577777
Q ss_pred ecCCCeEEEee-CCCCC----ceeEEEecCCCeEEEE-cCCCC------eEEEEE
Q psy17325 354 MDGSNRSTIIS-TKIYW----PNGLTLDIATRRVYFA-DSKLD------FIDFCN 396 (461)
Q Consensus 354 ~dG~~~~~l~~-~~l~~----p~glaiD~~~~~ly~~-d~~~~------~I~~~~ 396 (461)
+++.....+.. ..-.+ +..+++.+++++|+++ ....+ .|+.++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 76555444432 21122 2478998888888886 43333 677777
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.19 Score=48.66 Aligned_cols=196 Identities=8% Similarity=-0.006 Sum_probs=114.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC-CC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG-SN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG-~~ 228 (461)
.+..+++.+.+..|+ +-..++.|.+.++........+...-.....+++++ . .|+... ....|...++.. ..
T Consensus 136 ~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~~~~--~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 136 YVASVKWSHDGSFLS-VGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR--H--VLSSGS--RSGAIHHHDVRIANH 208 (401)
T ss_dssp CEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET--T--EEEEEE--TTSEEEEEETTSSSC
T ss_pred CEEEEEECCCCCEEE-EECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC--C--EEEEEc--CCCCEEEEecccCcc
Confidence 456777776444444 444578899999775554444444435567777754 3 555544 446777777763 33
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
....+........++++.+.+..|+.+.... .|...++.......
T Consensus 209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----------------------------------~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-----------------------------------VVQIWDARSSIPKF 253 (401)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTS-----------------------------------CEEEEETTCSSEEE
T ss_pred eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----------------------------------eEEEccCCCCCccE
Confidence 2333333445678899988655555544332 35555555433333
Q ss_pred EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc
Q psy17325 309 LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 309 l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d 386 (461)
.+.... ...+++.|.+..|+.+-.+ ...+.|...++........+ ..-.....+++.+.+..|+.+.
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~g----------s~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGG----------TMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECC----------TTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecC----------CCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEe
Confidence 332222 7899999988877776431 01344555554433332222 2334578899987777777763
Q ss_pred -CCCCeEEEEEec
Q psy17325 387 -SKLDFIDFCNYD 398 (461)
Q Consensus 387 -~~~~~I~~~~~~ 398 (461)
...+.|...++.
T Consensus 323 g~~dg~i~v~~~~ 335 (401)
T 4aez_A 323 GFPDNNLSIWSYS 335 (401)
T ss_dssp CTTTCEEEEEEEE
T ss_pred ecCCCcEEEEecC
Confidence 356788888883
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.19 Score=53.06 Aligned_cols=209 Identities=8% Similarity=0.025 Sum_probs=112.9
Q ss_pred ecCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCC-C-----CCceeEEEcCCCCceEEEEe-ecCCC--CcEEEEec
Q psy17325 158 WIGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDN-I-----TQPRGMMLDPSPGTRWLFWT-DWGEN--PRIERIGM 224 (461)
Q Consensus 158 ~~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~-~-----~~p~~ia~d~~~g~~~ly~t-d~~~~--~~I~~~~~ 224 (461)
+.++.+|++-.. ...|.+.+..+...++++... + ....++++.|... +|.++ +.+.. ..|+..++
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~--~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGE--YFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSS--EEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCC--EEEEEEcCCCCceEEEEEEEC
Confidence 346777766432 226788887665555554321 1 1245788888755 66554 42222 38999999
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
++.....+..... ...+++..+.++.||++......-. ..+. .........|++.++.+.
T Consensus 159 ~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~-~~~~------------------~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 159 DGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGK-SDGT------------------ETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp TTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSC-CSSS------------------CCCCCCCCEEEEEETTSC
T ss_pred CCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccc-cccc------------------ccccCCCCEEEEEECCCC
Confidence 8765443322222 2456888877888887654321000 0000 000001135777777654
Q ss_pred ce--EEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-------C-CeEEEeeCCCCCc
Q psy17325 305 NA--SILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-------S-NRSTIISTKIYWP 370 (461)
Q Consensus 305 ~~--~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-------~-~~~~l~~~~l~~p 370 (461)
.. .++..... ..++++.|.++.|+++... .......|+..++++ . ..+.+. .....-
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~--------~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~ 289 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE--------GCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGE 289 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC--------SSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSC
T ss_pred cccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc--------cCCCccEEEEEECcccccccCCccceEEee-CCCCcE
Confidence 42 34444321 4578888888877765432 111145677777764 2 234444 222211
Q ss_pred eeEEEecCCCeEEEEcCC---CCeEEEEEec
Q psy17325 371 NGLTLDIATRRVYFADSK---LDFIDFCNYD 398 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~---~~~I~~~~~~ 398 (461)
.-.+++.+++||+.... ..+|..++++
T Consensus 290 -~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~ 319 (710)
T 2xdw_A 290 -YDYVTNEGTVFTFKTNRHSPNYRLINIDFT 319 (710)
T ss_dssp -EEEEEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred -EEEEeccCCEEEEEECCCCCCCEEEEEeCC
Confidence 22466678889887432 4589999984
|
| >2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00014 Score=54.20 Aligned_cols=26 Identities=42% Similarity=1.067 Sum_probs=23.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 55 ~g~CI~~~~~CDG~~DC~DgSDE-~~C 80 (82)
T 2fyj_A 55 NGRCININWRCDNDNDCGDNSDE-AGC 80 (82)
T ss_dssp TSCEEETTCBSSSSBCCSSSSSC-SCC
T ss_pred CCCeEcHHHccCCCCcCCCCccc-cCC
Confidence 57899999999999999999999 455
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.11 Score=54.72 Aligned_cols=209 Identities=11% Similarity=0.059 Sum_probs=115.9
Q ss_pred eeeeeeeecCCeEEEEeCCCC----eEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC-----------
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLN----RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE----------- 215 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~----~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~----------- 215 (461)
..++++.+.++.|.++-...+ .|.+.++++.....+.... ....+++..|... .||++....
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK--GMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS--EEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC--EEEEEEECCccccccccccc
Confidence 456777777777766543322 7999998876654332211 1256789988766 788775221
Q ss_pred ---CCcEEEEecCCCCcE-EEEecc---cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecC
Q psy17325 216 ---NPRIERIGMDGSNRS-TIISTK---IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEG 288 (461)
Q Consensus 216 ---~~~I~~~~~dG~~~~-~i~~~~---~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~ 288 (461)
..+|++.++.+...+ .++... -....++++.+.++.|+++-.....-
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~-------------------------- 257 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP-------------------------- 257 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS--------------------------
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC--------------------------
Confidence 234888888654321 233221 12345788888888887764321000
Q ss_pred CCCcceeeeEEeCCC------C--ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC--
Q psy17325 289 GNGVPLKIGKANMDG------S--NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-- 358 (461)
Q Consensus 289 ~~~~~~~I~~~~~~g------~--~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-- 358 (461)
. ..|+..++++ . ..+.+........-.+++.++.||+.... -+.+.+|++.++++..
T Consensus 258 ~----~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~---------~~~~~~l~~~d~~~~~~~ 324 (710)
T 2xdw_A 258 V----NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNR---------HSPNYRLINIDFTDPEES 324 (710)
T ss_dssp C----CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECT---------TCTTCEEEEEETTSCCGG
T ss_pred c----cEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECC---------CCCCCEEEEEeCCCCCcc
Confidence 0 2466666653 2 23333332222222456667777765332 1125678888887654
Q ss_pred -eEEEeeCCC-CCceeEEEecCCCeEEEEcCCC--CeEEEEEecCCCCe
Q psy17325 359 -RSTIISTKI-YWPNGLTLDIATRRVYFADSKL--DFIDFCNYDGTGRQ 403 (461)
Q Consensus 359 -~~~l~~~~l-~~p~glaiD~~~~~ly~~d~~~--~~I~~~~~~g~g~~ 403 (461)
.+.++...- ....++++. .+++|+++-... .+|+.+++. +|..
T Consensus 325 ~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~-~g~~ 371 (710)
T 2xdw_A 325 KWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLA-TGAL 371 (710)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT-TCCE
T ss_pred cceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECC-CCCE
Confidence 255552221 235567774 477888764433 367777772 4543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.18 Score=47.36 Aligned_cols=215 Identities=7% Similarity=-0.027 Sum_probs=116.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+.+..| ++-..++.|.+.++........+...-.....+++.|... +|+.+. ....|...++.....
T Consensus 34 ~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~--~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 34 PLTQVKYNKEGDLL-FSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK--YCVTGS--ADYSIKLWDVSNGQC 108 (369)
T ss_dssp CEEEEEECTTSCEE-EEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEE--TTTEEEEEETTTCCE
T ss_pred eEEEEEEcCCCCEE-EEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCC--EEEEEe--CCCeEEEEECCCCcE
Confidence 35566776644444 4444567888888665444444443445678999998755 666554 346788888875544
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCC----CceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSK----LDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~----~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
...+. .-..+..+++.+.+..|+.+... .+.|. +|=.+..... ..+. ......
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~------------------~~d~~~~~~~--~~~~--~~~~~~ 165 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN------------------IYEIERDSAT--HELT--KVSEEP 165 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEE------------------EEEEEECTTT--CCEE--EECSSC
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEE------------------EEEecCCccc--eeec--ccccce
Confidence 33333 34467889999877777665543 12221 1111111100 0111 111111
Q ss_pred eEEEE-eCC--eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEeeCCCCCceeEEEecCCCe
Q psy17325 306 ASILV-SGQ--LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTIISTKIYWPNGLTLDIATRR 381 (461)
Q Consensus 306 ~~~l~-~~~--~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~~~~l~~p~glaiD~~~~~ 381 (461)
...+. ... ....++++|.+..|+.+.. .+.|...++.. ......+...-....++++++.+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHK-------------DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEET-------------TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcC-------------CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 22222 222 2677888887776665443 34555555544 2222223244556788999866555
Q ss_pred EEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 382 VYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
|+.+ ...+.|...++. ++.....+
T Consensus 233 l~~~-~~d~~i~v~d~~-~~~~~~~~ 256 (369)
T 3zwl_B 233 FITS-SRDTNSFLVDVS-TLQVLKKY 256 (369)
T ss_dssp EEEE-ETTSEEEEEETT-TCCEEEEE
T ss_pred EEEe-cCCceEEEEECC-CCceeeee
Confidence 6555 456788888883 45544333
|
| >2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00028 Score=58.72 Aligned_cols=56 Identities=27% Similarity=0.571 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCC--CCc---ccCCCCCCCCCceeCCC-CceEeCCCCCeecCCCCceecCcc
Q psy17325 17 DCPNGADEGPGCD--LAE---CKHKFGLCSNTCHPTPL-GALCTCPPGEILSNDSVTCQDMNE 73 (461)
Q Consensus 17 dC~dg~de~~~C~--~~~---C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~d~~e 73 (461)
.|+.|+. +..|. +++ |...++.|.+.|.++.+ +|.|.|++||.+..++.+|+++++
T Consensus 71 ~C~~G~~-G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~e 132 (142)
T 2c4f_L 71 FCLPAFE-GRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 132 (142)
T ss_dssp ECCTTEE-STTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESSS
T ss_pred eCCCCcc-CCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCCc
Confidence 3666653 46674 355 44456678889999999 999999999999888999998876
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00019 Score=61.78 Aligned_cols=73 Identities=34% Similarity=0.725 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCC-CceeCCCCceEeCCCCCeecCCCCcee-cCcceecCCcccC--ceeec-cCCc
Q psy17325 17 DCPNGADEGPGCDLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQ-DMNECEQPGYCSQ--MCTNT-KGSY 91 (461)
Q Consensus 17 dC~dg~de~~~C~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~-d~~eC~~~~~C~~--~C~~~-~g~~ 91 (461)
.|+.|+. +..|+ +|...+ .|.+ .|. +++.|.|++||. +..|+ ++++|.....|.+ .|.++ +++|
T Consensus 86 ~C~~G~~-G~~C~--~C~~~~-~C~~g~C~---~~~~C~C~~G~~----G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~ 154 (169)
T 2vj2_A 86 RCQYGWQ-GLYCD--KCIPHP-GCVHGICN---EPWQCLCETNWG----GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKY 154 (169)
T ss_dssp EECTTEE-SSSSC--EECCCT-TCSSEECS---STTCCEECTTEE----TTTTCEESCHHHHTCCCCTTCEEEECSTTCE
T ss_pred ECCCCCC-CCCcc--cCCCCC-CCCCCCcC---CCCEEeCCCCCC----CCcccCCCCCCCCCCCCCCCCEEcCCCCCCc
Confidence 3555543 34554 344332 2433 354 568899999996 56787 7888875456753 78886 7889
Q ss_pred cccCCCCee
Q psy17325 92 ICSCNEGYV 100 (461)
Q Consensus 92 ~C~C~~g~~ 100 (461)
.|.|++||.
T Consensus 155 ~C~C~~G~~ 163 (169)
T 2vj2_A 155 QCSCPEGYS 163 (169)
T ss_dssp EEECCTTCC
T ss_pred EeECCCCCc
Confidence 999999984
|
| >1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00025 Score=61.07 Aligned_cols=43 Identities=33% Similarity=0.770 Sum_probs=37.2
Q ss_pred CCCcccCCCCC---CCCCceeCCCCceEeCCCCCeecCCCCceecC
Q psy17325 29 DLAECKHKFGL---CSNTCHPTPLGALCTCPPGEILSNDSVTCQDM 71 (461)
Q Consensus 29 ~~~~C~~~~~~---C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~ 71 (461)
++++|...+.. |.+.|.+.+++|.|.|++||.+..++++|+++
T Consensus 123 di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp ECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred ccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence 56789876654 99999999999999999999998889999764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.44 Score=50.51 Aligned_cols=243 Identities=8% Similarity=0.018 Sum_probs=125.0
Q ss_pred ecCCeEEEEeCCC----CeEEEEeCC---CCcEEEEecCC-C-----CCceeEEEcCCCCceEEEE-eecCCC--CcEEE
Q psy17325 158 WIGGHIYWLDSRL----NRIEVCDEN---GTNRIVLAKDN-I-----TQPRGMMLDPSPGTRWLFW-TDWGEN--PRIER 221 (461)
Q Consensus 158 ~~~~~ly~~d~~~----~~I~~~~~~---G~~~~~l~~~~-~-----~~p~~ia~d~~~g~~~ly~-td~~~~--~~I~~ 221 (461)
+.++.+|++-... ..|.+.+.+ |...++++..+ + ....++++.|... +|.+ ++.+.. ..|+.
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~--~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR--LLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS--EEEEEEEETTCSEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC--EEEEEEcCCCCceEEEEE
Confidence 3467777665332 467888876 55555553321 1 1345788888755 5544 443232 57999
Q ss_pred EecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 222 IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 222 ~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
.++++........... ...+++..+. +.||++......-. + ..++. +....|++.++
T Consensus 194 ~dl~tg~~~~~~~~~~-~~~~~~wspD-~~l~~~~~~~~~~~---~---------------~~~~~---~~~~~v~~~~l 250 (741)
T 1yr2_A 194 VGVADGKPLADELKWV-KFSGLAWLGN-DALLYSRFAEPKEG---Q---------------AFQAL---NYNQTVWLHRL 250 (741)
T ss_dssp EETTTCCEEEEEEEEE-ESCCCEESTT-SEEEEEECCCC--------------------------C---CCCCEEEEEET
T ss_pred EECCCCCCCCccCCCc-eeccEEEECC-CEEEEEEecCcccc---c---------------ccccC---CCCCEEEEEEC
Confidence 9998766533321111 1245667666 77777653321000 0 00000 00135677776
Q ss_pred CCCc--eEEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--C-eEEEeeCCCCCcee
Q psy17325 302 DGSN--ASILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--N-RSTIISTKIYWPNG 372 (461)
Q Consensus 302 ~g~~--~~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~-~~~l~~~~l~~p~g 372 (461)
.+.. .+++..... ..++++.|.++.|+++... .+.....|+..++++. . .+.|. .....-..
T Consensus 251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~--------~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~ 321 (741)
T 1yr2_A 251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE--------GTDPVNTVHVARVTNGKIGPVTALI-PDLKAQWD 321 (741)
T ss_dssp TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC--------TTCSCCEEEEEEEETTEECCCEEEE-CSSSSCEE
T ss_pred CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc--------cCCCcceEEEEECCCCCCcccEEec-CCCCceEE
Confidence 5443 234443321 3467788877776665322 0112457888888765 4 44454 22222222
Q ss_pred EEEecCCCeEEEEcC---CCCeEEEEEecCCC-CeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 373 LTLDIATRRVYFADS---KLDFIDFCNYDGTG-RQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 373 laiD~~~~~ly~~d~---~~~~I~~~~~~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
. +++.+++||+.-. ...+|..++++ ++ ...+.+....... ..++++.++.|+++-...+..+
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~-~~~~~~~~l~~~~~~~-----------l~~~~~~~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLS-GSTPRFDTVVPESKDN-----------LESVGIAGNRLFASYIHDAKSQ 387 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECS-SSSCEEEEEECCCSSE-----------EEEEEEEBTEEEEEEEETTEEE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCC-CCccccEEEecCCCCe-----------EEEEEEECCEEEEEEEECCEEE
Confidence 2 3467888888633 35679999984 22 2333333222111 1244555777777765554443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.04 E-value=0.22 Score=46.98 Aligned_cols=193 Identities=10% Similarity=-0.050 Sum_probs=105.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE-EE-ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI-VL-AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~-~l-~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
.+..+++.+.+..| ++-...+.|.+.++...... .+ ....-..+..+++.|... +|+.+. ....|...+++..
T Consensus 54 ~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~--~d~~v~i~d~~~~ 128 (372)
T 1k8k_C 54 QVTGVDWAPDSNRI-VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK--KFAVGS--GSRVISICYFEQE 128 (372)
T ss_dssp CEEEEEEETTTTEE-EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS--EEEEEE--TTSSEEEEEEETT
T ss_pred cccEEEEeCCCCEE-EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC--EEEEEe--CCCEEEEEEecCC
Confidence 45678887644444 44456788999887655422 22 223334578999998866 777665 3356666666654
Q ss_pred Cc----EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC--
Q psy17325 228 NR----STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM-- 301 (461)
Q Consensus 228 ~~----~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~-- 301 (461)
.. ..+..........|++.+.+..|+.+.... . |...++
T Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~----------------------------------i~~~d~~~ 173 (372)
T 1k8k_C 129 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-K----------------------------------CRIFSAYI 173 (372)
T ss_dssp TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-C----------------------------------EEEEECCC
T ss_pred CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC-C----------------------------------EEEEEccc
Confidence 42 111122234577888887666555544332 2 222221
Q ss_pred -----------------CCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe
Q psy17325 302 -----------------DGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363 (461)
Q Consensus 302 -----------------~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~ 363 (461)
.+.....+..... +..++++|.+..|+.+.. .+.|...++........+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-------------DSTVCLADADKKMAVATL 240 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-------------TTEEEEEEGGGTTEEEEE
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-------------CCEEEEEECCCCceeEEE
Confidence 1222222211112 788899987666655433 345655565433332222
Q ss_pred eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 364 STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 364 ~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
...-.....+++++.+ +++.+- ..+.|...++
T Consensus 241 ~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 241 ASETLPLLAVTFITES-SLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp ECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEE
T ss_pred ccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEc
Confidence 2444456889998554 444443 5566777776
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.00 E-value=0.22 Score=46.13 Aligned_cols=193 Identities=6% Similarity=-0.008 Sum_probs=107.5
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
+..+++.+.+. +..+-..++.|.+.+.........+.........+++.|... +|+.+. ....|...++......
T Consensus 26 v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~--~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 26 VSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN--LLVSAS--DDKTLKIWDVSSGKCL 100 (312)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETTTCCEE
T ss_pred EEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCC--EEEEEC--CCCEEEEEECCCCcEE
Confidence 45566665444 444555577888888754444444444445578899999765 666554 3457777777644433
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV 310 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~ 310 (461)
..+.........+++.+.+..|+.+.... .|...++........+
T Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----------------------------------~i~iwd~~~~~~~~~~ 145 (312)
T 4ery_A 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDE-----------------------------------SVRIWDVKTGKCLKTL 145 (312)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTS-----------------------------------CEEEEETTTCCEEEEE
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----------------------------------cEEEEECCCCEEEEEe
Confidence 33333334566788887666655544332 3455555433322222
Q ss_pred eCC-e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 311 SGQ-L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 311 ~~~-~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
... . ...+++.|.+..|+.+.. .+.|...++.. .....+..........+++++.+..|..+ .
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 211 (312)
T 4ery_A 146 PAHSDPVSAVHFNRDGSLIVSSSY-------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-T 211 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEET-------------TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE-E
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE-c
Confidence 222 2 678888886665554433 33444444432 22223332233344668888666666555 4
Q ss_pred CCCeEEEEEe
Q psy17325 388 KLDFIDFCNY 397 (461)
Q Consensus 388 ~~~~I~~~~~ 397 (461)
..+.|...++
T Consensus 212 ~d~~i~iwd~ 221 (312)
T 4ery_A 212 LDNTLKLWDY 221 (312)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEEC
Confidence 4578888888
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0063 Score=61.71 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=77.9
Q ss_pred EcCccceeeeeeeecCCeEEEEeCC---------------------CCeEEEEeCCCCc--------EEEEec-------
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSR---------------------LNRIEVCDENGTN--------RIVLAK------- 188 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~---------------------~~~I~~~~~~G~~--------~~~l~~------- 188 (461)
.+.+.+||++++++.++.||++=++ .++|.+...++.. ...++.
T Consensus 380 AT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~ 459 (592)
T 4a9v_A 380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA 459 (592)
T ss_dssp CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred CccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccc
Confidence 3556789999999999999998543 3789888865421 122221
Q ss_pred -------------CCCCCceeEEEcCCCCceEEEE-eecC----------CCCcEEEEecCCCCcEEEEec-ccccceeE
Q psy17325 189 -------------DNITQPRGMMLDPSPGTRWLFW-TDWG----------ENPRIERIGMDGSNRSTIIST-KIYWPNGL 243 (461)
Q Consensus 189 -------------~~~~~p~~ia~d~~~g~~~ly~-td~~----------~~~~I~~~~~dG~~~~~i~~~-~~~~P~gl 243 (461)
..+..|.+|++|+. | .||+ +|-. .+..+++...+....+.++.. ....|+||
T Consensus 460 ~~~~~g~~~~~~~~~fnsPDnL~fd~~-G--~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGi 536 (592)
T 4a9v_A 460 GTPKGGSSNITPQNMFNSPDGLGFDKA-G--RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGI 536 (592)
T ss_dssp TSGGGCCTTCCTTTCCCCEEEEEECTT-C--CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEE
T ss_pred cccccCccCccccCccCCCCceEECCC-C--CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCC
Confidence 12678999999987 5 6888 8832 124788888864444444432 34579999
Q ss_pred EeeccCCeeEEecC
Q psy17325 244 TLDIATRRVYFADS 257 (461)
Q Consensus 244 avD~~~~~ly~~d~ 257 (461)
++.+..+.||++-.
T Consensus 537 afSPD~ktLfV~vQ 550 (592)
T 4a9v_A 537 SFSPDQKTLFVGIQ 550 (592)
T ss_dssp EECTTSSEEEEEEE
T ss_pred EECCCCCEEEEEEe
Confidence 99999999998754
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00037 Score=59.21 Aligned_cols=44 Identities=39% Similarity=0.815 Sum_probs=38.2
Q ss_pred ceecCcceecC--CcccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 67 TCQDMNECEQP--GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 67 ~C~d~~eC~~~--~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
.|.+++||... ..|++.|.|..++|.|.|.+||.|..++++|.+
T Consensus 113 ~~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp EEEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred ecccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 47788999743 479999999999999999999999999999964
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.32 Score=47.33 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=60.5
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+. +.+.++-..++.|.+.++........+...-.....+++.|... +|.-+. ....|...++.+...
T Consensus 110 ~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~--~l~sgs--~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 110 PVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK--LLASCS--ADMTIKLWDFQGFEC 184 (410)
T ss_dssp CEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS--EEEEEE--TTSCCCEEETTSSCE
T ss_pred cEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC--EEEEEe--CCCeEEEEeCCCCce
Confidence 4556777654 45666667788999999765443333333335578899998755 555443 345666666665433
Q ss_pred EEEEecccccceeEEeeccCCeeEEec
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
...+.........+++.+.++.|+-+.
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 222222234567788887666555443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.33 Score=47.32 Aligned_cols=202 Identities=10% Similarity=0.105 Sum_probs=110.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+ .+++..+-..++.|.+.++.+......+...-.....+++.|... +|+-+. ....|...++.....
T Consensus 152 ~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~--~l~s~s--~D~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 152 SVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSAS--RDKTIKMWEVQTGYC 226 (410)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS--EEEEEE--TTSEEEEEETTTCCE
T ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC--EEEEEe--CCCeEEEEECCCCcE
Confidence 456677775 455666767788999999877655444444445678899999755 555444 346777777764333
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
...+.........+++.+.+..|.-+.. .+ .|...++........
T Consensus 227 ~~~~~~h~~~v~~~~~~~~g~~l~s~s~-D~----------------------------------~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 227 VKTFTGHREWVRMVRPNQDGTLIASCSN-DQ----------------------------------TVRVWVVATKECKAE 271 (410)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEET-TS----------------------------------CEEEEETTTCCEEEE
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcC-CC----------------------------------eEEEEECCCCceeeE
Confidence 2233333345566777765444433332 22 244444433322222
Q ss_pred EeCCe--eeeEEEeccC-------------------CeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEEeeCCC
Q psy17325 310 VSGQL--YEALALDLEN-------------------GMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTIISTKI 367 (461)
Q Consensus 310 ~~~~~--p~~iavd~~~-------------------~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l~~~~l 367 (461)
+.... ...+++.|.. +.+.++-.. .+.|...++.... ...+. ..-
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~------------D~~i~iwd~~~~~~~~~~~-~h~ 338 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR------------DKTIKMWDVSTGMCLMTLV-GHD 338 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET------------TSEEEEEETTTTEEEEEEE-CCS
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC------------CCeEEEEECCCCceEEEEE-CCC
Confidence 22111 5666666642 223333222 3445555544322 22333 445
Q ss_pred CCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 368 YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 368 ~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
.+..+|++++.+..|+.+ ...+.|...++. ++.....
T Consensus 339 ~~v~~v~~~~~g~~l~s~-s~D~~i~vwd~~-~~~~~~~ 375 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSC-ADDKTLRVWDYK-NKRCMKT 375 (410)
T ss_dssp SCEEEEEECSSSSCEEEE-ETTTEEEEECCT-TSCCCEE
T ss_pred CcEEEEEEcCCCCEEEEE-eCCCeEEEEECC-CCceEEE
Confidence 567889998665555544 456788888883 4443333
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00082 Score=48.44 Aligned_cols=67 Identities=21% Similarity=0.325 Sum_probs=44.4
Q ss_pred CCCcccCCCCCCCC--CceeCCCCceEe-CCCCCeecCCCCceecCcceecCCcccCceeeccCCccccCCCCeeeeCCC
Q psy17325 29 DLAECKHKFGLCSN--TCHPTPLGALCT-CPPGEILSNDSVTCQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDN 105 (461)
Q Consensus 29 ~~~~C~~~~~~C~~--~C~~~~~~~~C~-C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~ 105 (461)
+++||...+..|.. .|++++++|.|. |..||....++..+.. .+ ..+...+.|++||++. ++
T Consensus 2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~~~--~~------------~~~~~~~~C~~Gy~~~-~~ 66 (71)
T 2kl7_A 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPP--PV------------PPAQHPNPCPPGYEPD-DQ 66 (71)
T ss_dssp CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSCCC--SS------------CSCSSCCCSCTTEEEE-CC
T ss_pred ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCcccc--cc------------ccCccccCCCCCeeeC-CC
Confidence 46788776667854 699999999997 5578876555543311 11 1122356899999998 45
Q ss_pred Cceee
Q psy17325 106 HTCKA 110 (461)
Q Consensus 106 ~~C~~ 110 (461)
.+|.|
T Consensus 67 ~~C~D 71 (71)
T 2kl7_A 67 DSCVD 71 (71)
T ss_dssp CCSCC
T ss_pred CcccC
Confidence 56754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.28 Score=45.92 Aligned_cols=197 Identities=6% Similarity=-0.043 Sum_probs=100.7
Q ss_pred ceeeeeeeecC--CeEEEEeCCCCeEEEEeCCCCc-EEEEecCCCCCceeEE------EcCCCCceEEEEeecCCCCcEE
Q psy17325 150 LVEGLAYDWIG--GHIYWLDSRLNRIEVCDENGTN-RIVLAKDNITQPRGMM------LDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 150 ~p~~iavd~~~--~~ly~~d~~~~~I~~~~~~G~~-~~~l~~~~~~~p~~ia------~d~~~g~~~ly~td~~~~~~I~ 220 (461)
.+..+++.+.. +.++++-...+.|.+.++.... ....+.........++ +.+... .|+.+. ....|.
T Consensus 67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~--~d~~i~ 142 (357)
T 3i2n_A 67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGS--RDGTVK 142 (357)
T ss_dssp CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEE--TTSCEE
T ss_pred cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc--EEEEEe--CCCeEE
Confidence 34566666553 4666666667899999977554 2223333334456664 345544 555544 345777
Q ss_pred EEecCCCC-cEEEEecc----cccceeEE----eeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCC
Q psy17325 221 RIGMDGSN-RSTIISTK----IYWPNGLT----LDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNG 291 (461)
Q Consensus 221 ~~~~dG~~-~~~i~~~~----~~~P~gla----vD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~ 291 (461)
..++.... ....+... ......++ +.+.+..|+.+...
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------------------------------- 189 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------------------------------- 189 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT---------------------------------
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC---------------------------------
Confidence 77776443 22222111 11333444 44444444443322
Q ss_pred cceeeeEEeCCCCceEEEEeCCe-eeeEEEec---cCCeEEEeecCceeeEEEeecCCCCceEEEeecCC-CeEEE----
Q psy17325 292 VPLKIGKANMDGSNASILVSGQL-YEALALDL---ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS-NRSTI---- 362 (461)
Q Consensus 292 ~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~---~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~-~~~~l---- 362 (461)
+.|...++............. ...+++.| .+..|+.+.. .+.|...++... ....+
T Consensus 190 --~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 254 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSL-------------EGKFHVFDMRTQHPTKGFASVS 254 (357)
T ss_dssp --SEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEES-------------TTEEEEEEEEEEETTTEEEEEE
T ss_pred --CeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECC-------------CCeEEEEeCcCCCcccceeeec
Confidence 235555655544433332222 78889988 5565555433 233433333211 11111
Q ss_pred eeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 363 ISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 363 ~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
....-.....+++.+.+..++++-...+.|...++.
T Consensus 255 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 255 EKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 113445677888886555466665666788877773
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.35 Score=46.68 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=62.6
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccc
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~ 239 (461)
.++++++-...+.|.+.++........+.........+++.|... +|+.+. ....|...++........+......
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s--~d~~i~iwd~~~~~~~~~~~~h~~~ 183 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE--ALISSS--QDMQLKIWSVKDGSNPRTLIGHRAT 183 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETTTCCCCEEEECCSSC
T ss_pred CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC--EEEEEe--CCCeEEEEeCCCCcCceEEcCCCCc
Confidence 455566666678899999887766555544446688999999755 666554 3467888887643333333333456
Q ss_pred ceeEEeeccCCeeEEecCC
Q psy17325 240 PNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 240 P~glavD~~~~~ly~~d~~ 258 (461)
...+++.+.+..|+.+...
T Consensus 184 v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 184 VTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEcCC
Confidence 7889998877666655443
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00022 Score=65.64 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=35.5
Q ss_pred CCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCceecCccee
Q psy17325 29 DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 29 ~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
+++||......|.. .|.|++++|.|.|++||. .++..|.+++++.
T Consensus 4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d~d~Pq 50 (285)
T 1gl4_A 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVAEGSPQ 50 (285)
T ss_dssp ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEETTCEE
T ss_pred cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC--CCCCcCCCCCCCc
Confidence 46788866677864 599999999999999997 4778999998864
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00062 Score=42.67 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=25.8
Q ss_pred CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 30 LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+++|..++......|.+..++|.|.|++||. +..|+
T Consensus 3 ~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~----G~~Ce 38 (39)
T 1edm_B 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFE----GKNCE 38 (39)
T ss_dssp CCTTTTCCCCTTCEEEEETTEEEEECCTTCC----STTSC
T ss_pred cccCCCCCCCCCCEeEcCCCceEeECCCCCc----CCccC
Confidence 4567655433345799999999999999995 45554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.26 Score=51.86 Aligned_cols=241 Identities=8% Similarity=-0.019 Sum_probs=124.2
Q ss_pred ecCCeEEEEeCCC----CeEEEEeCCCCcEEEEecCC-C-----CCceeEEEcCCCCceEEEEe-ecCC--CCcEEEEec
Q psy17325 158 WIGGHIYWLDSRL----NRIEVCDENGTNRIVLAKDN-I-----TQPRGMMLDPSPGTRWLFWT-DWGE--NPRIERIGM 224 (461)
Q Consensus 158 ~~~~~ly~~d~~~----~~I~~~~~~G~~~~~l~~~~-~-----~~p~~ia~d~~~g~~~ly~t-d~~~--~~~I~~~~~ 224 (461)
+.++.+|++-... ..|.+.+.+|...++++..+ + ....++++.|... +|.++ +.+. ...|+..++
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~--~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK--KVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS--EEEEEEEETTCSCCEEEEEET
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC--EEEEEECCCCCceEEEEEEEC
Confidence 3467777765432 46788887766666665421 1 1356788888755 55444 4332 268999999
Q ss_pred CCCCcEEEEeccccc--ceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 225 DGSNRSTIISTKIYW--PNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 225 dG~~~~~i~~~~~~~--P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
++..... ...+.. ..+++..+.++.||++......-... + .......|++.+++
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~-------------------~---~~~~~~~v~~~~l~ 210 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV-------------------D---ERPGYTTIRYHTLG 210 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG-------------------G---GGGGGCEEEEEETT
T ss_pred CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc-------------------c---cCCCCCEEEEEECC
Confidence 8765420 111211 15677777777787765432100000 0 00011357777777
Q ss_pred CCc--eEEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEe
Q psy17325 303 GSN--ASILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLD 376 (461)
Q Consensus 303 g~~--~~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD 376 (461)
+.. .+.+..... ..++++.|.+..|+++.... .....|+..+..+...+.|. ...........
T Consensus 211 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~---------~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~- 279 (695)
T 2bkl_A 211 TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRG---------WSENDVYWKRPGEKDFRLLV-KGVGAKYEVHA- 279 (695)
T ss_dssp SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEET---------TTEEEEEEECTTCSSCEEEE-ECSSCCEEEEE-
T ss_pred CCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCC---------CCceEEEEEcCCCCceEEee-cCCCceEEEEe-
Confidence 554 234444321 45788888888777654320 01235555554444444444 22222222222
Q ss_pred cCCCeEEEEcC---CCCeEEEEEecCCCCe---EEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 377 IATRRVYFADS---KLDFIDFCNYDGTGRQ---QVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 377 ~~~~~ly~~d~---~~~~I~~~~~~g~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
+.++ ||+... ...+|..++++ ++.. +.++... .... ..++++.++.|+++-...+..++
T Consensus 280 ~~g~-l~~~s~~~~~~~~l~~~d~~-~~~~~~~~~l~~~~-~~~~----------l~~~~~~~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 280 WKDR-FYVLTDEGAPRQRVFEVDPA-KPARASWKEIVPED-SSAS----------LLSVSIVGGHLSLEYLKDATSEV 344 (695)
T ss_dssp ETTE-EEEEECTTCTTCEEEEEBTT-BCSGGGCEEEECCC-SSCE----------EEEEEEETTEEEEEEEETTEEEE
T ss_pred cCCc-EEEEECCCCCCCEEEEEeCC-CCCccCCeEEecCC-CCCe----------EEEEEEECCEEEEEEEECCEEEE
Confidence 3455 776533 35789999984 2331 2333221 1111 12345557777777665554443
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0002 Score=49.80 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=30.6
Q ss_pred CCcccCCCCCCC--CCceeCCCCceEeCCCCCeecCCCCceecCccee
Q psy17325 30 LAECKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 30 ~~~C~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
.++|..+++.-. ..|.+.+++|.|.|++||.+ +..|++.++|.
T Consensus 11 ~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~---G~~C~~~~~C~ 55 (61)
T 2k2s_B 11 PAACSSNPCGPEAAGTCKETNSGYICRCNQGYRI---SLDGTGNVTCI 55 (61)
T ss_dssp CCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEE---EECSSSCEEEE
T ss_pred CCcCcCCCCcCCCccccccCCCceEeECCCCCcc---CCCCCCCCEec
Confidence 467776553333 46999999999999999962 34677666664
|
| >2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0003 Score=61.86 Aligned_cols=24 Identities=38% Similarity=0.916 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+|+||+.+|+|||..||+||+||.
T Consensus 65 ~g~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 65 VPECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp SCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCcEechhhccCCCCCCCCCCccc
Confidence 479999999999999999999994
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.39 Score=45.83 Aligned_cols=154 Identities=10% Similarity=0.082 Sum_probs=95.2
Q ss_pred CCceeEEEcCCC-CceEEEEeecCCCCcEEEEecCCCCcEEEEe--cccccceeEEeeccC-CeeEEecCCCceeeeccc
Q psy17325 192 TQPRGMMLDPSP-GTRWLFWTDWGENPRIERIGMDGSNRSTIIS--TKIYWPNGLTLDIAT-RRVYFADSKLDFIDCKSL 267 (461)
Q Consensus 192 ~~p~~ia~d~~~-g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~--~~~~~P~glavD~~~-~~ly~~d~~~~~i~~~~~ 267 (461)
.....+++.|.. . +|+... ....|...++........+. ........+++.+.+ ..|+.+.. .
T Consensus 74 ~~v~~~~~~~~~~~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d-------- 140 (383)
T 3ei3_B 74 RRVTSLEWHPTHPT--TVAVGS--KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI-R-------- 140 (383)
T ss_dssp SCEEEEEECSSCTT--EEEEEE--BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET-T--------
T ss_pred CCEEEEEECCCCCC--EEEEEc--CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC-C--------
Confidence 456788888876 4 555544 34578888887655544443 233456788887733 44444333 2
Q ss_pred ceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC---e-eeeEEEeccCCeEEEeecCceeeEEEeec
Q psy17325 268 EIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ---L-YEALALDLENGMLYYSTLKCTRWLFWTDW 343 (461)
Q Consensus 268 ~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~---~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~ 343 (461)
+.|...++.+.....+.... . ...+++.|.+..|+....
T Consensus 141 --------------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------- 183 (383)
T 3ei3_B 141 --------------------------GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS----------- 183 (383)
T ss_dssp --------------------------TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----------
T ss_pred --------------------------CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----------
Confidence 24566666665544444332 1 778999987776654433
Q ss_pred CCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 344 GENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 344 ~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.+.|...++++.....+. ..-.....|++.+.+..++++-...+.|...++.
T Consensus 184 --d~~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 184 --TGRLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp --TSEEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred --CCCEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence 456666666665555544 4556788899987766466665667788888883
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.37 Score=45.19 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=61.8
Q ss_pred ceeeeeeeecCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-----------
Q psy17325 150 LVEGLAYDWIGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG----------- 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~----------- 214 (461)
.+..+++.+.++.|+++... ...|.+.++++.....+.... . ..++++.|... .|+++...
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSR--KLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSS--EEEEEEECCCC--------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCC--EEEEEEccCCCcCCcEEEc
Confidence 35566777777778776543 335888898877655554433 2 77888988755 77766421
Q ss_pred --------------CCCcEEEEecCCCCc-EEEEecccccceeEEeeccCCeeEEe
Q psy17325 215 --------------ENPRIERIGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFA 255 (461)
Q Consensus 215 --------------~~~~I~~~~~dG~~~-~~i~~~~~~~P~glavD~~~~~ly~~ 255 (461)
....|++.++++... +.+.. . ....+++.+.+ .+|.+
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEE
Confidence 125788888876554 44433 2 56677787755 44444
|
| >2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00025 Score=52.42 Aligned_cols=24 Identities=33% Similarity=0.776 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+|+|||..||.||+||.
T Consensus 51 ~g~Ci~~~~~CDg~~DC~dgsDE~ 74 (80)
T 2fcw_B 51 SSTCIPQLWACDNDPDCEDGSDEW 74 (80)
T ss_dssp TSCEEEGGGTTSSSCCSTTCGGGC
T ss_pred CCCEEecccccCCCcCCCCCCCcC
Confidence 578999999999999999999994
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.22 Score=46.63 Aligned_cols=76 Identities=8% Similarity=0.042 Sum_probs=45.9
Q ss_pred ceeeeeeeecCCeEEEEeCC---CCeEEEEeCCCCcEEEEec-CCCCCceeEEEcCCC--CceEEEEeecCCCCcEEEEe
Q psy17325 150 LVEGLAYDWIGGHIYWLDSR---LNRIEVCDENGTNRIVLAK-DNITQPRGMMLDPSP--GTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~---~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d~~~--g~~~ly~td~~~~~~I~~~~ 223 (461)
.+..+++.+.+..+..+-.. ++.|.+.++++.....+.. ........+++.|.. | ++|+... ....|...+
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~--~dg~i~iwd 96 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ-RYLATGD--FGGNLHIWN 96 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT-CCEEEEE--TTSCEEEEC
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC-ceEEEec--CCCeEEEEe
Confidence 35566776656666666554 7889998877655433221 222457889998873 3 1555544 346777777
Q ss_pred cCCCC
Q psy17325 224 MDGSN 228 (461)
Q Consensus 224 ~dG~~ 228 (461)
+....
T Consensus 97 ~~~~~ 101 (357)
T 3i2n_A 97 LEAPE 101 (357)
T ss_dssp TTSCS
T ss_pred CCCCC
Confidence 76543
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.013 Score=59.52 Aligned_cols=119 Identities=14% Similarity=0.211 Sum_probs=76.7
Q ss_pred CCCCCceeEEEcCCCCceEEEEeecC--------------------CCCcEEEEecCCCC-------cEEEEec------
Q psy17325 189 DNITQPRGMMLDPSPGTRWLFWTDWG--------------------ENPRIERIGMDGSN-------RSTIIST------ 235 (461)
Q Consensus 189 ~~~~~p~~ia~d~~~g~~~ly~td~~--------------------~~~~I~~~~~dG~~-------~~~i~~~------ 235 (461)
..+.+|.+|+++|.+| .||++--+ ...+|+|...++.. ...++..
T Consensus 381 T~mdRpEdi~v~p~~g--~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~ 458 (592)
T 4a9v_A 381 TRMDRPEWIVVSPKDG--QVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVH 458 (592)
T ss_dssp CCEECEEEEEECTTTC--CEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTS
T ss_pred ccccCccceeEcCCCC--EEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccc
Confidence 3467899999999999 99998421 12679998876543 1222211
Q ss_pred ---------------ccccceeEEeeccCCeeEE-ecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEE
Q psy17325 236 ---------------KIYWPNGLTLDIATRRVYF-ADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKA 299 (461)
Q Consensus 236 ---------------~~~~P~glavD~~~~~ly~-~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~ 299 (461)
.+..|.+|+||. .+.||+ +|.......... ..+ ...+++.
T Consensus 459 ~~~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~-------------------~~g----nn~v~~~ 514 (592)
T 4a9v_A 459 AGTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFA-------------------GMG----NNQMLCA 514 (592)
T ss_dssp TTSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGT-------------------TCC----SCEEEEE
T ss_pred ccccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCcccccc-------------------ccC----CceEEEE
Confidence 267899999996 689999 886431100000 000 0246777
Q ss_pred eCCCCceEEEEeCC--e-eeeEEEeccCCeEEEeecC
Q psy17325 300 NMDGSNASILVSGQ--L-YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 300 ~~~g~~~~~l~~~~--~-p~~iavd~~~~~lY~t~~~ 333 (461)
..+....+.++... . |.|+++.|.++.||++...
T Consensus 515 dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 515 DPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp CTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred eCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 77544444444432 2 9999999999999998654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.4 Score=50.82 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=110.6
Q ss_pred eeeeeeeecCCeEEEEeCC--C--CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC-----------
Q psy17325 151 VEGLAYDWIGGHIYWLDSR--L--NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE----------- 215 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~--~--~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~----------- 215 (461)
..++++.+.++.|.++-.. . ..|.+.++++........... ...+++..|. . .||++....
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~-~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV-KFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE-ESCCCEESTT-S--EEEEEECCCC--------CC
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc-eeccEEEECC-C--EEEEEEecCcccccccccCC
Confidence 4456777777776555432 2 358999988765433321111 1246788877 6 777775222
Q ss_pred -CCcEEEEecCCCCc-EEEEecccc---cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCC
Q psy17325 216 -NPRIERIGMDGSNR-STIISTKIY---WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN 290 (461)
Q Consensus 216 -~~~I~~~~~dG~~~-~~i~~~~~~---~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~ 290 (461)
..+|++.++.+... ..++...-. .-.++++.+.++.|+++-..... ..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------------------------~~- 293 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--------------------------PV- 293 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC--------------------------SC-
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC--------------------------Cc-
Confidence 23588888754332 223322221 24577788777777765432100 00
Q ss_pred CcceeeeEEeCCCC--c-eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--CeEEEee
Q psy17325 291 GVPLKIGKANMDGS--N-ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--NRSTIIS 364 (461)
Q Consensus 291 ~~~~~I~~~~~~g~--~-~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~~~~l~~ 364 (461)
..|+..++++. . .+.+..... .... +.+.++.||+.... -+.+.+|+++++++. ..+.++.
T Consensus 294 ---~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~---------~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 294 ---NTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGD---------GAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp ---CEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECT---------TCTTCEEEEEECSSSSCEEEEEEC
T ss_pred ---ceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECC---------CCCCCEEEEEeCCCCccccEEEec
Confidence 24666666654 3 334433221 1111 34667777665322 123567999988773 4455553
Q ss_pred CCCCCceeEEEecCCCeEEEEcC--CCCeEEEEEecCCCCeE
Q psy17325 365 TKIYWPNGLTLDIATRRVYFADS--KLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 365 ~~l~~p~glaiD~~~~~ly~~d~--~~~~I~~~~~~g~g~~~ 404 (461)
..-....++++ .+++|+++-. +..+|+.+++ +|...
T Consensus 361 ~~~~~l~~~~~--~~~~lv~~~~~dg~~~l~~~~~--~g~~~ 398 (741)
T 1yr2_A 361 ESKDNLESVGI--AGNRLFASYIHDAKSQVLAFDL--DGKPA 398 (741)
T ss_dssp CCSSEEEEEEE--EBTEEEEEEEETTEEEEEEEET--TSCEE
T ss_pred CCCCeEEEEEE--ECCEEEEEEEECCEEEEEEEeC--CCCce
Confidence 32222345666 4778887743 3446777777 55543
|
| >1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00052 Score=63.10 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=33.8
Q ss_pred ecCccee-cCCcccC--ceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 69 QDMNECE-QPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 69 ~d~~eC~-~~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
+|++||. ....|+. .|.|+.|+|.|.|.+||. .++..|.+++++.
T Consensus 3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~--GnG~~C~d~d~Pq 50 (285)
T 1gl4_A 3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYT--GNGRQCVAEGSPQ 50 (285)
T ss_dssp ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEE--ECSSSEEETTCEE
T ss_pred ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCC--CCCCcCCCCCCCc
Confidence 4789997 3457864 799999999999999997 4678999987643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.71 Score=48.49 Aligned_cols=207 Identities=8% Similarity=0.074 Sum_probs=113.8
Q ss_pred eeeeecCCeEEEEeCC------------CCeEEEEeCCCCc--EEEEecCCC---CCceeEEEcCCCCceEEEEeecCC-
Q psy17325 154 LAYDWIGGHIYWLDSR------------LNRIEVCDENGTN--RIVLAKDNI---TQPRGMMLDPSPGTRWLFWTDWGE- 215 (461)
Q Consensus 154 iavd~~~~~ly~~d~~------------~~~I~~~~~~G~~--~~~l~~~~~---~~p~~ia~d~~~g~~~ly~td~~~- 215 (461)
+++. .++.||++... ..+|.+.++.... ...+..... ..-.++++.|... +|+++....
T Consensus 180 ~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~ 256 (693)
T 3iuj_A 180 ISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDR--FLLISAANST 256 (693)
T ss_dssp CEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSC--EEEEEEESSS
T ss_pred EEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCC--EEEEEEccCC
Confidence 3444 46677777543 2458887775443 233333221 1134677888755 887765322
Q ss_pred C-CcEEEEecCCC--CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCc
Q psy17325 216 N-PRIERIGMDGS--NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGV 292 (461)
Q Consensus 216 ~-~~I~~~~~dG~--~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~ 292 (461)
. ..|+..++++. ..+.+... ...-.. .+++.+++||+.......
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~-~~~~~g~~l~~~t~~~~~------------------------------- 303 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGD-LDADVS-LVDNKGSTLYLLTNRDAP------------------------------- 303 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECS-SSSCEE-EEEEETTEEEEEECTTCT-------------------------------
T ss_pred CCcEEEEEECCCCCCceEEEeCC-CCceEE-EEeccCCEEEEEECCCCC-------------------------------
Confidence 2 58899888754 33444332 111111 145567777775432210
Q ss_pred ceeeeEEeCCCCce---EEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCC
Q psy17325 293 PLKIGKANMDGSNA---SILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 369 (461)
Q Consensus 293 ~~~I~~~~~~g~~~---~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~ 369 (461)
..+|.++++++... +.++.... ..+.+.+.++.|+++... ....+|+..+++|...+.+.......
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~s~~g~~lv~~~~~----------~g~~~l~~~d~~g~~~~~l~~p~~~~ 372 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQ-QVLTVHSGSGYLFAEYMV----------DATARVEQFDYEGKRVREVALPGLGS 372 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCS-SCEEEEEETTEEEEEEEE----------TTEEEEEEECTTSCEEEEECCSSSSE
T ss_pred CCEEEEEeCCCCCccccEEEecCCC-CEEEEEEECCEEEEEEEE----------CCeeEEEEEECCCCeeEEeecCCCce
Confidence 03688888876554 45544332 112666678877776443 11347888888887665554233333
Q ss_pred ceeEEEecCCCeEEEEcCC---CCeEEEEEecCCCCeEEEEEc
Q psy17325 370 PNGLTLDIATRRVYFADSK---LDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~---~~~I~~~~~~g~g~~~~~~~~ 409 (461)
..+++.++.++.|+++-.. -..|+.+++ .+.....+..
T Consensus 373 ~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~--~~g~~~~l~~ 413 (693)
T 3iuj_A 373 VSGFNGKHDDPALYFGFENYAQPPTLYRFEP--KSGAISLYRA 413 (693)
T ss_dssp EEECCCCTTCSCEEEEEECSSSCCEEEEECT--TTCCEEEEEC
T ss_pred EEeeecCCCCCEEEEEecCCCCCCEEEEEEC--CCCeEEEEEe
Confidence 4455666667777776332 268888888 3434444443
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=44.90 Aligned_cols=37 Identities=30% Similarity=0.581 Sum_probs=27.0
Q ss_pred CCCcccCCCCCCCCCce-----eCCCCceEeCCCCCeecCCCCcee
Q psy17325 29 DLAECKHKFGLCSNTCH-----PTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~-----~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+++||.+++.+-..+|. +..++|.|.|++||. +..|+
T Consensus 7 ~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~----G~~CE 48 (55)
T 3u7u_G 7 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFT----GDRCQ 48 (55)
T ss_dssp ECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEE----STTSC
T ss_pred cCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCc----CCCcC
Confidence 45788877755566794 456789999999996 67775
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.47 Score=50.45 Aligned_cols=193 Identities=9% Similarity=0.030 Sum_probs=105.0
Q ss_pred cCCeEEEEeCCCC----eEEEEeC---CCC--cEEEEecC-------CCCCceeEEEc-CCCCceEEEEe-ecCCC--Cc
Q psy17325 159 IGGHIYWLDSRLN----RIEVCDE---NGT--NRIVLAKD-------NITQPRGMMLD-PSPGTRWLFWT-DWGEN--PR 218 (461)
Q Consensus 159 ~~~~ly~~d~~~~----~I~~~~~---~G~--~~~~l~~~-------~~~~p~~ia~d-~~~g~~~ly~t-d~~~~--~~ 218 (461)
.++.+||+-...+ .+.+.+. +|. ..++++.. ......+.++. |... +|.|+ +.... ..
T Consensus 125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~--~lAy~~~~~G~~~~~ 202 (751)
T 2xe4_A 125 YGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHD--LVAFSVDMSGNEVYT 202 (751)
T ss_dssp ETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTC--EEEEEEESSSSSCEE
T ss_pred ECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCC--EEEEEEeCCCCceEE
Confidence 4788888865433 3667766 665 55666542 11134567888 7754 55554 42222 45
Q ss_pred EEEEecCCC-CcEEEEecccc-cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 219 IERIGMDGS-NRSTIISTKIY-WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 219 I~~~~~dG~-~~~~i~~~~~~-~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
|+..++++. ... ...+. ...+++..+.++.||++..... +.+..|
T Consensus 203 l~v~dl~~g~~~l---~~~~~~~~~~~~WspDg~~l~y~~~d~~------------------------------~~~~~v 249 (751)
T 2xe4_A 203 IEFKRISDPSQTI---ADKVSGTNGEIVWGPDHTSLFYVTKDET------------------------------LRENKV 249 (751)
T ss_dssp EEEEETTCTTCCC---CCCEEEECSCCEECSSTTEEEEEEECTT------------------------------CCEEEE
T ss_pred EEEEECCCCCEeC---CccccCceeeEEEecCCCEEEEEEECCC------------------------------CCCCEE
Confidence 999999876 421 11110 1235666666666766543210 111368
Q ss_pred eEEeCCCCc--eEEEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC--e--EEEeeCCC
Q psy17325 297 GKANMDGSN--ASILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN--R--STIISTKI 367 (461)
Q Consensus 297 ~~~~~~g~~--~~~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~--~--~~l~~~~l 367 (461)
++.++++.. .+.++.... -.++++.|.++.|+|+... .....|+.+++++.. . +.+. ...
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~----------~~~~~l~~~d~~~~~~~~~~~~l~-~~~ 318 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQS----------PETAEVHLLDLRKGNAHNTLEIVR-PRE 318 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEEC----------SSCEEEEEEESSSCTTCCCEEESS-CCC
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecC----------CCCceEEEEECCCCCCCceeEEee-cCC
Confidence 888887654 234444321 3456677777766665322 235678888877642 2 3333 222
Q ss_pred CCceeEEEe-cCCCeEEEE-c---CCCCeEEEEEec
Q psy17325 368 YWPNGLTLD-IATRRVYFA-D---SKLDFIDFCNYD 398 (461)
Q Consensus 368 ~~p~glaiD-~~~~~ly~~-d---~~~~~I~~~~~~ 398 (461)
..+ -..+| ..+++||+. + ....+|.+++++
T Consensus 319 ~~~-~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 319 KGV-RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp TTC-CEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred CCc-eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 222 12344 357888876 2 245689999983
|
| >2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=47.35 Aligned_cols=40 Identities=28% Similarity=0.606 Sum_probs=28.9
Q ss_pred ecCcceec-CCccc--CceeeccCCccccC-CCCeeeeCCCCce
Q psy17325 69 QDMNECEQ-PGYCS--QMCTNTKGSYICSC-NEGYVLEYDNHTC 108 (461)
Q Consensus 69 ~d~~eC~~-~~~C~--~~C~~~~g~~~C~C-~~g~~l~~~~~~C 108 (461)
+|++||.. ...|. +.|+|++|+|.|.| ..||....++..+
T Consensus 1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~ 44 (71)
T 2kl7_A 1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGP 44 (71)
T ss_dssp CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSC
T ss_pred CccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCcc
Confidence 36889973 34685 48999999999984 5688766555443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.12 Score=50.88 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=111.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
.+..|++.+..+++..+-..++.|.+.+++......++. +.-....+|++.|..+ .++++- +....|...++.+.
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~--~~l~s~-s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT--NQFYAS-SMEGTTRLQDFKGN 197 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT--TEEEEE-CSSSCEEEEETTSC
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC--CEEEEE-eCCCEEEEeeccCC
Confidence 466788877777777777788999999987554333332 2234578999998655 455554 44567877888775
Q ss_pred CcEEEEecc--cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 228 NRSTIISTK--IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 228 ~~~~i~~~~--~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
....+.... ......+++++.+..|..+.... .|...+++|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----------------------------------~i~~wd~~~~~ 242 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG-----------------------------------NVILLNMDGKE 242 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS-----------------------------------BEEEEESSSCB
T ss_pred ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC-----------------------------------cEeeeccCcce
Confidence 544443321 12345688887666555544332 35555666544
Q ss_pred eEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEe--eCCCCCceeEEEecCCCe
Q psy17325 306 ASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTII--STKIYWPNGLTLDIATRR 381 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~--~~~l~~p~glaiD~~~~~ 381 (461)
...+..... ...|++.|.+..++.+-.. .+.|...++.. .....+. ...-.....|++++.+..
T Consensus 243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~------------d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 310 (435)
T 4e54_B 243 LWNLRMHKKKVTHVALNPCCDWFLATASV------------DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR 310 (435)
T ss_dssp CCCSBCCSSCEEEEEECTTCSSEEEEEET------------TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred eEEEecccceEEeeeecCCCceEEEEecC------------cceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence 332221111 7788998887766665443 23333333321 1111111 112233456777765555
Q ss_pred EEEEcCCCCeEEEEEe
Q psy17325 382 VYFADSKLDFIDFCNY 397 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~ 397 (461)
|..+ ...+.|...++
T Consensus 311 l~s~-~~D~~i~iwd~ 325 (435)
T 4e54_B 311 LLTT-DQKSEIRVYSA 325 (435)
T ss_dssp EEEE-ESSSCEEEEES
T ss_pred eEEE-cCCCEEEEEEC
Confidence 5544 44567777776
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.55 Score=43.95 Aligned_cols=187 Identities=7% Similarity=-0.016 Sum_probs=104.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC---CCCcEEEEecCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG---ENPRIERIGMDG 226 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~---~~~~I~~~~~dG 226 (461)
.+..+++.+.+ +.+++-..++.|.+.++........+. .-..+..+++.|... .|+.+... ....|...++..
T Consensus 76 ~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 76 TIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp CEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEE
T ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecC
Confidence 45667776644 444555567899999987555444443 235688999999866 66665521 014566555543
Q ss_pred CCc------------EEEEe-cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcc
Q psy17325 227 SNR------------STIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVP 293 (461)
Q Consensus 227 ~~~------------~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~ 293 (461)
... ..+.. ........+++++.+..|+.+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------------------------------- 197 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG---------------------------------- 197 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS----------------------------------
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC----------------------------------
Confidence 221 11110 1112567788888776666655432
Q ss_pred eeeeEEeCCC-CceEEEEeC-Ce-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc
Q psy17325 294 LKIGKANMDG-SNASILVSG-QL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370 (461)
Q Consensus 294 ~~I~~~~~~g-~~~~~l~~~-~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p 370 (461)
.|...++.. ......+.. .. ...+++.|.+..|+.+.. .+.|...++......... ..-...
T Consensus 198 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------d~~i~v~d~~~~~~~~~~-~~~~~~ 262 (369)
T 3zwl_B 198 -KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR-------------DTNSFLVDVSTLQVLKKY-ETDCPL 262 (369)
T ss_dssp -EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-------------TSEEEEEETTTCCEEEEE-ECSSCE
T ss_pred -EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-------------CceEEEEECCCCceeeee-cCCCCc
Confidence 355555554 222222222 22 788999987666655433 344555555433333323 233456
Q ss_pred eeEEEecCCCeEEEEcCCC
Q psy17325 371 NGLTLDIATRRVYFADSKL 389 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~ 389 (461)
..+++.+.+..|+.+....
T Consensus 263 ~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEEECSSSSEEEEEECCC
T ss_pred eeEEecCCCceEEEeecCC
Confidence 7788887777777765443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.79 Score=48.81 Aligned_cols=186 Identities=9% Similarity=0.043 Sum_probs=103.1
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
+.+++.|. .++||+.- ..+.|.+.+......+.+.. ........|+.|+. | .|+++. . ..|.+.+.....
T Consensus 409 v~~i~~d~-~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~-g--~lwigt-~--~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 409 VLCSLKDS-EGNLWFGT-YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN-K--KIWIGT-H--AGVFVIDLASKK 480 (781)
T ss_dssp EEEEEECT-TSCEEEEE-TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT-S--EEEEEE-T--TEEEEEESSSSS
T ss_pred eEEEEECC-CCCEEEEe-ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC-C--CEEEEE-C--CceEEEeCCCCe
Confidence 44566663 45665543 34568888776444333321 12245778888874 5 677765 2 578888877544
Q ss_pred cEEEEecc-----cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC
Q psy17325 229 RSTIISTK-----IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG 303 (461)
Q Consensus 229 ~~~i~~~~-----~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g 303 (461)
.+.+.... ...+..|+.|. .++|+++....+ +.+.+.++
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~~G-----------------------------------l~~~~~~~ 524 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFGGG-----------------------------------VGIYTPDM 524 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESSSC-----------------------------------EEEECTTC
T ss_pred EEecccCcccccccceeEEEEEcC-CCCEEEEEcCCC-----------------------------------EEEEeCCC
Confidence 44333221 23567888885 677777654321 45555544
Q ss_pred CceEEEEe-CCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-CCC--CCceeEEE
Q psy17325 304 SNASILVS-GQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKI--YWPNGLTL 375 (461)
Q Consensus 304 ~~~~~l~~-~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~~l--~~p~glai 375 (461)
...+.+.. ..+ ...|..|+ .|.||++... +++ .+.+......+.+-. ..+ ....+|+.
T Consensus 525 ~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~T~~--Glv-----------~~~d~~~~~~~~~~~~~gl~~~~i~~i~~ 590 (781)
T 3v9f_A 525 QLVRKFNQYEGFCSNTINQIYRSS-KGQMWLATGE--GLV-----------CFPSARNFDYQVFQRKEGLPNTHIRAISE 590 (781)
T ss_dssp CEEEEECTTTTCSCSCEEEEEECT-TSCEEEEETT--EEE-----------EESCTTTCCCEEECGGGTCSCCCCCEEEE
T ss_pred CeEEEccCCCCCCCCeeEEEEECC-CCCEEEEECC--Cce-----------EEECCCCCcEEEccccCCCCCceEEEEEE
Confidence 43333321 122 56788884 6777776543 221 444433322222211 122 23568999
Q ss_pred ecCCCeEEEEcCCCCeEEEEEe
Q psy17325 376 DIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 376 D~~~~~ly~~d~~~~~I~~~~~ 397 (461)
| .+++||++-. +-|.+++.
T Consensus 591 d-~~g~lW~~t~--~Gl~~~~~ 609 (781)
T 3v9f_A 591 D-KNGNIWASTN--TGISCYIT 609 (781)
T ss_dssp C-SSSCEEEECS--SCEEEEET
T ss_pred C-CCCCEEEEcC--CceEEEEC
Confidence 8 6789988853 44888888
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.46 E-value=0.65 Score=44.27 Aligned_cols=99 Identities=6% Similarity=-0.173 Sum_probs=57.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-------EEEEecCCCCCceeEEEcCC----C---CceEEEEeecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-------RIVLAKDNITQPRGMMLDPS----P---GTRWLFWTDWGEN 216 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-------~~~l~~~~~~~p~~ia~d~~----~---g~~~ly~td~~~~ 216 (461)
+..+++++ +++++-..++.|.+.+++... ...+. ..-.....+++.|. . . +|+.+. ..
T Consensus 19 i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~--~l~s~~--~d 90 (397)
T 1sq9_A 19 IFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELC--LVATTS--FS 90 (397)
T ss_dssp EEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEE--EEEEEE--TT
T ss_pred eEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCcccc--EEEEEc--CC
Confidence 44555543 566666778899999987655 33333 33345688899886 5 5 666655 33
Q ss_pred CcEEEEecCCCCc-----EEEEecc-----cccceeEEee----ccCCe-eEEecC
Q psy17325 217 PRIERIGMDGSNR-----STIISTK-----IYWPNGLTLD----IATRR-VYFADS 257 (461)
Q Consensus 217 ~~I~~~~~dG~~~-----~~i~~~~-----~~~P~glavD----~~~~~-ly~~d~ 257 (461)
..|...++..... ...+... -.....+++. +.+.. |+.+..
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 5676666664442 2222222 2567788888 76776 555544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.45 E-value=1.1 Score=46.82 Aligned_cols=197 Identities=8% Similarity=0.015 Sum_probs=110.9
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-----EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-----RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-----~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
..+..+++.+.+.++.++-+.++.|.+.+++... ....+...-.....+++.|... +|.-.. ....|...+
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs--~Dg~v~vwd 458 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGS--WDGELRLWD 458 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEe--CCCcEEEEE
Confidence 3456677776667888888889999999876421 1222333334577899998755 665544 345777777
Q ss_pred cCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC
Q psy17325 224 MDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG 303 (461)
Q Consensus 224 ~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g 303 (461)
+........+.........+++.+.+..|.-+.... .|..-+..+
T Consensus 459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~-----------------------------------~i~iwd~~~ 503 (694)
T 3dm0_A 459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR-----------------------------------TIKLWNTLG 503 (694)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS-----------------------------------CEEEECTTS
T ss_pred CCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC-----------------------------------EEEEEECCC
Confidence 764333223333344567888887666665443332 244444444
Q ss_pred CceEEEEeCC--e---eeeEEEeccCC-eEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEec
Q psy17325 304 SNASILVSGQ--L---YEALALDLENG-MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377 (461)
Q Consensus 304 ~~~~~l~~~~--~---p~~iavd~~~~-~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~ 377 (461)
.....+.... . ...+++.|... .+.++-.. .+.|...++........+...-.....|++.+
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 571 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW------------DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP 571 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC------------CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence 3333332211 1 56677776542 23333332 34455555544333333324445677889985
Q ss_pred CCCeEEEEcCCCCeEEEEEe
Q psy17325 378 ATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~ 397 (461)
.+ ++..+-...+.|...++
T Consensus 572 dg-~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 572 DG-SLCASGGKDGVVLLWDL 590 (694)
T ss_dssp TS-SEEEEEETTSBCEEEET
T ss_pred CC-CEEEEEeCCCeEEEEEC
Confidence 54 44445455677888887
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.96 Score=46.59 Aligned_cols=203 Identities=9% Similarity=-0.002 Sum_probs=107.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GS 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~ 227 (461)
.|..+++++.++.|.... .+.|.+.++. +....++ .+.-.....+++.|... +|--.+ ....|..-++. +.
T Consensus 20 ~~~~~~~spdg~~l~~~~--~~~v~l~~~~~~~~~~~~-~~h~~~v~~~~~spdg~--~lasg~--~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGY--YCASGD--VHGNVRIWDTTQTT 92 (611)
T ss_dssp CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEESSSTT
T ss_pred ceeEEeeCCCCCEEEeCC--CCEEEEecCCCcccCeEe-cCCCCceEEEEECCCCc--EEEEEe--CCCCEEEeECCCCc
Confidence 466677887777776655 3588888875 4444443 33335578899999755 555444 34566666664 33
Q ss_pred CcE-EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 228 NRS-TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 228 ~~~-~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
... ..+...-.....+++++.++.|..+....+.. ..|...+ .|+..
T Consensus 93 ~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~-------------------------------~~v~~wd-~~~~~ 140 (611)
T 1nr0_A 93 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF-------------------------------GHVFLFD-TGTSN 140 (611)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS-------------------------------EEEEETT-TCCBC
T ss_pred ceeeEeecccCCceEEEEECCCCCEEEEEECCCCce-------------------------------eEEEEee-CCCCc
Confidence 221 12222234567899999888777655433210 1122222 12211
Q ss_pred EEEEeCC-eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 307 SILVSGQ-LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 307 ~~l~~~~-~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
..+.... ....+++.|.+..+..+-.. .+.|.-.+.........+...-.....+++.++ ++++.+
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~------------D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-g~~las 207 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFAS 207 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEET------------TSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEE
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeC------------CCeEEEEECCCCeEeeeeccccCceEEEEECCC-CCEEEE
Confidence 1111111 17788888876654555443 222322222111111112234456778899865 445555
Q ss_pred cCCCCeEEEEEecCCCCeEE
Q psy17325 386 DSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 386 d~~~~~I~~~~~~g~g~~~~ 405 (461)
-...+.|...++. +|....
T Consensus 208 ~s~D~~i~lwd~~-~g~~~~ 226 (611)
T 1nr0_A 208 TGGDGTIVLYNGV-DGTKTG 226 (611)
T ss_dssp EETTSCEEEEETT-TCCEEE
T ss_pred EECCCcEEEEECC-CCcEee
Confidence 4556778887762 455433
|
| >1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=54.71 Aligned_cols=42 Identities=33% Similarity=0.667 Sum_probs=35.1
Q ss_pred CCCcccCC-CCCCCCCceeCCCCceEeCCCCCeecCCCCceec
Q psy17325 29 DLAECKHK-FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 29 ~~~~C~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
+.++|... ...|.+.|.+.++++.|.|++||.+..++++|++
T Consensus 116 d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~ 158 (159)
T 1nzi_A 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158 (159)
T ss_dssp ECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred cCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence 46788753 3578899999999999999999999888888974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.34 E-value=1.1 Score=45.50 Aligned_cols=201 Identities=8% Similarity=-0.102 Sum_probs=102.2
Q ss_pred eeeeeeee--cCCeEEEEeCCCCeEEEEeCC-C------C-cEEEEecCCCCCceeEEEcCCCCceEEEEeecCCC--Cc
Q psy17325 151 VEGLAYDW--IGGHIYWLDSRLNRIEVCDEN-G------T-NRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGEN--PR 218 (461)
Q Consensus 151 p~~iavd~--~~~~ly~~d~~~~~I~~~~~~-G------~-~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~--~~ 218 (461)
+..+++.+ .+..|+ +-..++.|.+.++. | . .....+.........+++.|... +|+.+..... ..
T Consensus 67 v~~~~~sp~~~~~~l~-s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~ 143 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLC-SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGV 143 (615)
T ss_dssp EEEEEECSSTTCCEEE-EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEE
T ss_pred EEEEEECcCCCCCEEE-EecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccE
Confidence 57788887 444444 44457889998884 3 1 11222222335678999999866 7776652211 34
Q ss_pred EEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 219 IERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 219 I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
|...+ .+. ....+.........+++.+.+..++++-...+. |..
T Consensus 144 v~~~d-~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~----------------------------------v~v 187 (615)
T 1pgu_A 144 FISWD-SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS----------------------------------VVF 187 (615)
T ss_dssp EEETT-TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTE----------------------------------EEE
T ss_pred EEEEE-CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCc----------------------------------EEE
Confidence 44444 222 222222333456788888766634444333322 333
Q ss_pred EeCCCCceEEEEe--CC---eeeeEEEecc-CCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEEee---CCCC
Q psy17325 299 ANMDGSNASILVS--GQ---LYEALALDLE-NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTIIS---TKIY 368 (461)
Q Consensus 299 ~~~~g~~~~~l~~--~~---~p~~iavd~~-~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l~~---~~l~ 368 (461)
.++........+. .. ....+++.|. +..|+.... .+.|...++.... ...+.. ..-.
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-------------DRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-------------TCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-------------CCeEEEEECCCCCEeEEecccccccCC
Confidence 3332222111111 11 2567888887 554444332 3445555543222 222212 2334
Q ss_pred CceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEE
Q psy17325 369 WPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 369 ~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~ 406 (461)
....|++. +++++++-...+.|...++. ++.....
T Consensus 255 ~v~~~~~~--~~~~l~~~~~d~~i~~wd~~-~~~~~~~ 289 (615)
T 1pgu_A 255 GIFALSWL--DSQKFATVGADATIRVWDVT-TSKCVQK 289 (615)
T ss_dssp CEEEEEES--SSSEEEEEETTSEEEEEETT-TTEEEEE
T ss_pred ceEEEEEc--CCCEEEEEcCCCcEEEEECC-CCcEEEE
Confidence 56778886 44444444556788888883 4544333
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.2 Score=47.62 Aligned_cols=194 Identities=8% Similarity=0.021 Sum_probs=97.8
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
+..+++.+. +++.++-..++.|.+.++++.. ....+...-.....+++.|... +|+.+. ....|...++....
T Consensus 14 v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s--~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 14 SYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN--RIVTCS--QDRNAYVYEKRPDG 88 (377)
T ss_dssp CSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC--CEEEEE--TTSSEEEC------
T ss_pred EEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC--EEEEEe--CCCeEEEEEcCCCC
Confidence 455666653 3444444556778888877552 2222223334578899998855 666554 33567766666433
Q ss_pred ---cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 229 ---RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 229 ---~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
....+.........+++.+.+..|+.+.... .|...+++...
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------~i~iwd~~~~~ 133 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-----------------------------------VISVCYFEQEN 133 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-----------------------------------CEEECCC----
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCC-----------------------------------eEEEEEECCcc
Confidence 2222222334567788887666666554432 24444444332
Q ss_pred ----eEEEEe-CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-------------CC--eEEEee
Q psy17325 306 ----ASILVS-GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-------------SN--RSTIIS 364 (461)
Q Consensus 306 ----~~~l~~-~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-------------~~--~~~l~~ 364 (461)
...+.. ... ...+++.|.+..|...... +.|...++.. .. ...++.
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------------CEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 233322 112 7889999866655544332 2333333310 00 011111
Q ss_pred --CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 365 --TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 365 --~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
..-.....+++.+.+..|+.+. ..+.|...++.
T Consensus 201 ~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~ 235 (377)
T 3dwl_C 201 EYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPS 235 (377)
T ss_dssp CCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEEC
T ss_pred cccCCceEEEEEECCCCCEEEEEe-CCCcEEEEECC
Confidence 2333467889987666666653 45678888873
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.7 Score=43.21 Aligned_cols=184 Identities=8% Similarity=-0.017 Sum_probs=102.6
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEE--EecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIV--LAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY 238 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~--l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~ 238 (461)
+.+.++-+.++.|.+.+.+...... .+.+.......+++.+... .+.-+. ....|...++........+.....
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~ 123 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP--IAASSS--LDAHIRLWDLENGKQIKSIDAGPV 123 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS--EEEEEE--TTSEEEEEETTTTEEEEEEECCTT
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC--EEEEEe--CCCcEEEEECCCCCEEEEEeCCCc
Confidence 4566777778888888876544322 2333334567788887755 444333 446777777764333333333334
Q ss_pred cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--ee
Q psy17325 239 WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YE 316 (461)
Q Consensus 239 ~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~ 316 (461)
....+++.+.++.|..+.... .|...++........+.... ..
T Consensus 124 ~~~~~~~spdg~~l~~g~~dg-----------------------------------~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 124 DAWTLAFSPDSQYLATGTHVG-----------------------------------KVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp CCCCEEECTTSSEEEEECTTS-----------------------------------EEEEEETTTCSEEEEEECSSSCEE
T ss_pred cEEEEEECCCCCEEEEEcCCC-----------------------------------cEEEEEcCCCceeEEecCCCceEE
Confidence 566788888766665544332 34455554443333333222 77
Q ss_pred eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEE
Q psy17325 317 ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCN 396 (461)
Q Consensus 317 ~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~ 396 (461)
.+++.|.+..|..... .+.|...++........+...-.....|++.+.+..|..+ ...+.|...+
T Consensus 169 ~~~~spdg~~lasg~~-------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i~iwd 234 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAI-------------DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYIKIYD 234 (321)
T ss_dssp EEEECTTSSEEEEEET-------------TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCEEEEE
T ss_pred EEEECCCCCEEEEEcC-------------CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeEEEEE
Confidence 8899987766654433 3445555543322222222333456789998655555444 5567788888
Q ss_pred e
Q psy17325 397 Y 397 (461)
Q Consensus 397 ~ 397 (461)
+
T Consensus 235 ~ 235 (321)
T 3ow8_A 235 V 235 (321)
T ss_dssp T
T ss_pred C
Confidence 8
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.32 E-value=0.67 Score=42.95 Aligned_cols=102 Identities=6% Similarity=-0.055 Sum_probs=60.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-----EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-----RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-----~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.+..|++.+..+++.++-+.++.|.+.++.... ....+.+.......+++.|... +|+... ....|...+.
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~--~d~~i~~~~~ 115 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGS--WDGTLRLWDL 115 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEET
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEc--ccccceEEee
Confidence 466788877777888888888999998865432 1122233334578899998755 666554 3356666666
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEe
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFA 255 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~ 255 (461)
..................+.+.+.+..|+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 146 (340)
T 4aow_A 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146 (340)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred cccceeeeecCCCCceeEEEEeecCccceee
Confidence 5544333333333344555555545544443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.82 Score=42.96 Aligned_cols=197 Identities=8% Similarity=0.045 Sum_probs=103.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEE--EecCCCCCceeEEEcCC--CCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIV--LAKDNITQPRGMMLDPS--PGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~--l~~~~~~~p~~ia~d~~--~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+..+++.+.+..|. +-..++.|.+.++++..... .+...-.....|++.+. .. +|+.+. ....|...++.
T Consensus 13 ~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~--~dg~v~iwd~~ 87 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLA-TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCS--YDGKVLIWKEE 87 (379)
T ss_dssp CEEEEEECSSSSEEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEE--TTSCEEEEEEE
T ss_pred cEEEEEEcCCCCEEE-EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCC--EEEEec--cCCEEEEEEcC
Confidence 355667765444444 44456788888876433222 23333345678888755 34 565554 34567777776
Q ss_pred CCCc--EEEEecccccceeEEeecc--CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 226 GSNR--STIISTKIYWPNGLTLDIA--TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 226 G~~~--~~i~~~~~~~P~glavD~~--~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
.... .............+++.+. ...|+.+.... .|...++
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-----------------------------------~i~v~d~ 132 (379)
T 3jrp_A 88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----------------------------------KVSVVEF 132 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----------------------------------EEEEEEC
T ss_pred CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC-----------------------------------cEEEEec
Confidence 5432 1222223345778888876 45555544332 3444444
Q ss_pred CCC--ceEEEEeCCe--eeeEEEecc------------CCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEE--
Q psy17325 302 DGS--NASILVSGQL--YEALALDLE------------NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTI-- 362 (461)
Q Consensus 302 ~g~--~~~~l~~~~~--p~~iavd~~------------~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l-- 362 (461)
... .....+.... ...+++.|. ++.++++-.. .+.|...++.... ...+
T Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~ 200 (379)
T 3jrp_A 133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA------------DNLVKIWKYNSDAQTYVLES 200 (379)
T ss_dssp CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET------------TSCEEEEEEETTTTEEEEEE
T ss_pred CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC------------CCeEEEEEecCCCcceeeEE
Confidence 433 1222222222 677888874 3444443333 3455555554322 2111
Q ss_pred -eeCCCCCceeEEEecCC--CeEEEEcCCCCeEEEEEec
Q psy17325 363 -ISTKIYWPNGLTLDIAT--RRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 363 -~~~~l~~p~glaiD~~~--~~ly~~d~~~~~I~~~~~~ 398 (461)
+...-.....|++.+.. ++++.+-...+.|...++.
T Consensus 201 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 201 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 11234457789998763 5555554556778888873
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.77 Score=42.39 Aligned_cols=102 Identities=10% Similarity=0.097 Sum_probs=63.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+.++++.+.+.. ..+-..++.|.+.++........+...-.....+++.|... +|+... ....|...++.....
T Consensus 15 ~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s--~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 15 RVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--WIIVGS--DDFRIRVFNYNTGEK 89 (304)
T ss_dssp CEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT--EEEEEE--TTSEEEEEETTTCCE
T ss_pred ceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC--EEEEEC--CCCEEEEEECCCCcE
Confidence 4667788765544 44555678999999876544333333334467888888766 666554 346777777764443
Q ss_pred EEEEecccccceeEEeeccCCeeEEec
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
...+.........|++.+.+..|+-+.
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs 116 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEEC
Confidence 333333344577899988666555443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.19 E-value=0.76 Score=42.33 Aligned_cols=195 Identities=5% Similarity=-0.013 Sum_probs=105.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+.+ ++.++-..++.|.+.++........+.........+++.|... +|+... ....|...++.....
T Consensus 67 ~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~--~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 67 GISDVAWSSDS-NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGS--FDESVRIWDVKTGKC 141 (312)
T ss_dssp CEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEE--TTSCEEEEETTTCCE
T ss_pred ceEEEEEcCCC-CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC--EEEEEe--CCCcEEEEECCCCEE
Confidence 35567776644 4455555678999999775554444444435577899999866 666554 345777777764433
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-eEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-ASI 308 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-~~~ 308 (461)
...+.........+++.+.+..|+.+.... .|...++.... ...
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------------------~i~~wd~~~~~~~~~ 186 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-----------------------------------LCRIWDTASGQCLKT 186 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTS-----------------------------------CEEEEETTTCCEEEE
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-----------------------------------cEEEEECCCCceeeE
Confidence 333333233456788887666555544332 34444443322 222
Q ss_pred EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCC--CceeEEEecCCCeEEE
Q psy17325 309 LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIY--WPNGLTLDIATRRVYF 384 (461)
Q Consensus 309 l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~--~p~glaiD~~~~~ly~ 384 (461)
+..... ...++++|.+..|..+... +.|...++............-. ......+...++.+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 187 LIDDDNPPVSFVKFSPNGKYILAATLD-------------NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp ECCSSCCCEEEEEECTTSSEEEEEETT-------------TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 222222 5678888877666554332 3344444432221111111111 1122333445566666
Q ss_pred EcCCCCeEEEEEe
Q psy17325 385 ADSKLDFIDFCNY 397 (461)
Q Consensus 385 ~d~~~~~I~~~~~ 397 (461)
+-...+.|...++
T Consensus 254 sg~~dg~i~vwd~ 266 (312)
T 4ery_A 254 SGSEDNLVYIWNL 266 (312)
T ss_dssp ECCTTSCEEEEET
T ss_pred EECCCCEEEEEEC
Confidence 6666778888888
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.73 Score=42.01 Aligned_cols=99 Identities=8% Similarity=-0.033 Sum_probs=55.4
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC--
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN-- 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~-- 228 (461)
+..+++ + .+..+++-..++.|.+.+++.......+.........+++.|... .|+.+. ....|...++....
T Consensus 21 v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~--~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 21 VRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE--LLLFGG--KDTMINGVPLFATSGE 94 (313)
T ss_dssp EEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT--EEEEEE--TTSCEEEEETTCCTTS
T ss_pred cEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC--EEEEec--CCCeEEEEEeeecCCC
Confidence 445555 3 344455556678899999876655544444445688999999866 676665 34566655554322
Q ss_pred -cEEEEecccccceeEEeeccCCeeEEecC
Q psy17325 229 -RSTIISTKIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 229 -~~~i~~~~~~~P~glavD~~~~~ly~~d~ 257 (461)
....+.........++++ ++.|+.+..
T Consensus 95 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 122 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSFQ--DGVVISGSW 122 (313)
T ss_dssp CC-CEECCCSSCEEEEEEE--TTEEEEEET
T ss_pred CcccchhhcccCEEEEEec--CCEEEEEeC
Confidence 111122222344556664 445544443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.83 Score=42.54 Aligned_cols=195 Identities=10% Similarity=-0.012 Sum_probs=104.8
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-----EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-----IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-----~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
+..+++.+..+++.++-+.++.|.+.++.+... ...+...-.....+++.|... +|+-+. ....|...++.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s--~D~~v~~wd~~ 95 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSAS--WDKTLRLWDVA 95 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETT
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEe--CCCEEEEEECC
Confidence 455666655567777878888888887654221 112223334567889988755 666554 34577777765
Q ss_pred CCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.......+.........+++++....|.-+.... .|..-++.+..
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~-----------------------------------~i~vwd~~~~~ 140 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK-----------------------------------TIKVWTIKGQC 140 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTS-----------------------------------CEEEEETTSCE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCC-----------------------------------eEEEEECCCCe
Confidence 4332222333334567788887655555443322 34555555544
Q ss_pred eEEEEeCCe-eeeEEEeccC-----CeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCC
Q psy17325 306 ASILVSGQL-YEALALDLEN-----GMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIAT 379 (461)
Q Consensus 306 ~~~l~~~~~-p~~iavd~~~-----~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~ 379 (461)
...+..... ...+++.|.. +.+.++-.. .+.|...++............-.....|++.+.+
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN------------DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEET------------TSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC------------CCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 433332222 5556665532 223333222 3445544544333222222344456788888654
Q ss_pred CeEEEEcCCCCeEEEEEe
Q psy17325 380 RRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 380 ~~ly~~d~~~~~I~~~~~ 397 (461)
..|. +-...+.|...++
T Consensus 209 ~~l~-s~~~dg~i~iwd~ 225 (319)
T 3frx_A 209 TLIA-SAGKDGEIMLWNL 225 (319)
T ss_dssp SEEE-EEETTCEEEEEET
T ss_pred CEEE-EEeCCCeEEEEEC
Confidence 4444 4445678888888
|
| >1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.004 Score=47.27 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCC---CCcccCCCCCCCCCceeCC--CCceEeCCCCCeecCCCCcee-cCcc
Q psy17325 17 DCPNGADEGPGCD---LAECKHKFGLCSNTCHPTP--LGALCTCPPGEILSNDSVTCQ-DMNE 73 (461)
Q Consensus 17 dC~dg~de~~~C~---~~~C~~~~~~C~~~C~~~~--~~~~C~C~~G~~l~~~~~~C~-d~~e 73 (461)
.|+.|+. .|+ +++|..++..-...|.+.+ ++|.|.|++||. +..|+ +++|
T Consensus 35 ~C~~G~~---~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce~~ide 90 (91)
T 1tpg_A 35 WCNSGRA---QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFA----GKSCEIDTRA 90 (91)
T ss_dssp ECSSSCC---BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCB----SSSCCBCSSC
T ss_pred ECCCCCc---ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCc----CCcCCcCCCC
Confidence 4666663 674 6788866533345699887 899999999995 67886 5554
|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0011 Score=56.41 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCCCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCccee
Q psy17325 27 GCDLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECE 75 (461)
Q Consensus 27 ~C~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~ 75 (461)
.|..++|..+++.....|.+..++|.|.|++||. |..|++++||.
T Consensus 116 ICe~~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~----G~~Ce~~~~c~ 160 (162)
T 1g1s_A 116 LCYTASCQDMSCSKQGECLETIGNYTCSCYPGFY----GPECEYVRDDD 160 (162)
T ss_dssp EEEECCCCTTGGGGSEEEEECSSSEEEEECTTEE----STTSCEECC--
T ss_pred EEEeCCCcCCCCCCCCEEecCCCCceEeCCCCCc----CcccccCcccC
Confidence 3455566544422234577777777777777775 45677776664
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.96 Score=43.00 Aligned_cols=109 Identities=11% Similarity=0.031 Sum_probs=66.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+..++++++-...+.|.+.+++........... .....+++.+......++++- .....|...++.....
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE-ETVYSHHMSPVSTKHCLVAVG-TRGPKVQLCDLKSGSC 178 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSSCSSCCEEEEE-ESSSSEEEEESSSSCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC-CceeeeEeecCCCCCcEEEEE-cCCCeEEEEeCCCcce
Confidence 45567776656667777777889999998876655444422 346677777653211344443 3446788888764443
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCc
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLD 260 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~ 260 (461)
...+.........+++.+.+..++++-...+
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 3333333445678899887776555544433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.06 E-value=0.81 Score=48.38 Aligned_cols=96 Identities=14% Similarity=-0.060 Sum_probs=52.6
Q ss_pred eeeeecCCeEEEEeCC--------CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 154 LAYDWIGGHIYWLDSR--------LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 154 iavd~~~~~ly~~d~~--------~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
+++.+.++.|.++... .+.+.+.++.+.....+.. ........++.|... +|.++. ...|+..+++
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~-~~~~~~~~~~SPdG~--~la~~~---~~~i~~~~~~ 140 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEER-IPNNTQWVTWSPVGH--KLAYVW---NNDIYVKIEP 140 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCTTEEEEEECSSTT--CEEEEE---TTEEEEESST
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEccc-CCCcceeeEECCCCC--EEEEEE---CCeEEEEECC
Confidence 4555555555544321 1456677777665444332 123456778888755 555543 2468877777
Q ss_pred CCCcEEEEecc------------------cccceeEEeeccCCeeEEe
Q psy17325 226 GSNRSTIISTK------------------IYWPNGLTLDIATRRVYFA 255 (461)
Q Consensus 226 G~~~~~i~~~~------------------~~~P~glavD~~~~~ly~~ 255 (461)
+.....+...+ +....+++..+.+++|.++
T Consensus 141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~ 188 (740)
T 4a5s_A 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA 188 (740)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence 65544332221 1222357788878877765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.04 E-value=1.8 Score=45.30 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=110.2
Q ss_pred eeeeeeeecCCeEEEEeCCC----CeEEEEeCCCCcEE-EEecCCCCCceeEEEcCCCCceEEEEeecCC----------
Q psy17325 151 VEGLAYDWIGGHIYWLDSRL----NRIEVCDENGTNRI-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGE---------- 215 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~----~~I~~~~~~G~~~~-~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~---------- 215 (461)
..++++.+.++.|.++-... ..|.+.++++.... ...... ....+++..|... .||++....
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSK--GFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSS--EEEEEECCCCTTSCGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCC--EEEEEEecCCCCCccccCC
Confidence 45667777777665554322 57999998876532 101111 1126788988866 788876321
Q ss_pred -CCcEEEEecCCCCc--EEEEec--ccccceeEEeeccCCeeEEecCCC-ceeeecccceeeeeccceeeeEEEEEecCC
Q psy17325 216 -NPRIERIGMDGSNR--STIIST--KIYWPNGLTLDIATRRVYFADSKL-DFIDCKSLEIKTNVNYSTIFRKLYWIDEGG 289 (461)
Q Consensus 216 -~~~I~~~~~dG~~~--~~i~~~--~~~~P~glavD~~~~~ly~~d~~~-~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~ 289 (461)
..+|++.++.+... +.+... .-..-.++++.+.++.|+++.... ..
T Consensus 200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~---------------------------- 251 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE---------------------------- 251 (695)
T ss_dssp GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE----------------------------
T ss_pred CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc----------------------------
Confidence 24589888876542 233322 112345788888888887754322 11
Q ss_pred CCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCe---EEEee
Q psy17325 290 NGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNR---STIIS 364 (461)
Q Consensus 290 ~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~---~~l~~ 364 (461)
..|+..+..+...+.+..... .... +.+.++ ||+. +++. .+.+|++.++++... +.++.
T Consensus 252 ----~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~g~-l~~~----------s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 315 (695)
T 2bkl_A 252 ----NDVYWKRPGEKDFRLLVKGVGAKYEV-HAWKDR-FYVL----------TDEGAPRQRVFEVDPAKPARASWKEIVP 315 (695)
T ss_dssp ----EEEEEECTTCSSCEEEEECSSCCEEE-EEETTE-EEEE----------ECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred ----eEEEEEcCCCCceEEeecCCCceEEE-EecCCc-EEEE----------ECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence 235555544333344433221 1111 123444 5543 3333 367899999876542 55552
Q ss_pred CC-CCCceeEEEecCCCeEEEEcCC--CCeEEEEEecCCCCe
Q psy17325 365 TK-IYWPNGLTLDIATRRVYFADSK--LDFIDFCNYDGTGRQ 403 (461)
Q Consensus 365 ~~-l~~p~glaiD~~~~~ly~~d~~--~~~I~~~~~~g~g~~ 403 (461)
.. -....++++. +++|+++-.. ..+|+.+++ +|..
T Consensus 316 ~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~--~g~~ 353 (695)
T 2bkl_A 316 EDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATL--KGKP 353 (695)
T ss_dssp CCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEET--TCCE
T ss_pred CCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeC--CCCe
Confidence 32 2234567774 7888876443 346777777 4554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=1.1 Score=42.18 Aligned_cols=196 Identities=9% Similarity=0.043 Sum_probs=104.0
Q ss_pred eeeeeeeec-CCeEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCC--CCceEEEEeecCCCCcEEEEecC
Q psy17325 151 VEGLAYDWI-GGHIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPS--PGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 151 p~~iavd~~-~~~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~--~g~~~ly~td~~~~~~I~~~~~d 225 (461)
+..+++.+. .+++.++-..++.|.+.+++... ..............+++.|. .. .|+.+. ....|...++.
T Consensus 58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~--~d~~i~v~d~~ 133 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--LLLVAS--SDGKVSVVEFK 133 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEE--TTSEEEEEECC
T ss_pred EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCC--EEEEec--CCCcEEEEecC
Confidence 445555433 25555566667889999877654 22233333356889999987 44 555554 34577777776
Q ss_pred CCC--cEEEEecccccceeEEeecc-------------CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCC
Q psy17325 226 GSN--RSTIISTKIYWPNGLTLDIA-------------TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN 290 (461)
Q Consensus 226 G~~--~~~i~~~~~~~P~glavD~~-------------~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~ 290 (461)
... ....+.........+++.+. ...|+.+. ..+
T Consensus 134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg------------------------------ 182 (379)
T 3jrp_A 134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADN------------------------------ 182 (379)
T ss_dssp TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-TTS------------------------------
T ss_pred CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCC------------------------------
Confidence 442 23333333445667777763 33333333 222
Q ss_pred CcceeeeEEeCCCCc-e-EEE--EeCC-e-eeeEEEeccC--CeEEEeecCceeeEEEeecCCCCceEEEeecCCC---e
Q psy17325 291 GVPLKIGKANMDGSN-A-SIL--VSGQ-L-YEALALDLEN--GMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN---R 359 (461)
Q Consensus 291 ~~~~~I~~~~~~g~~-~-~~l--~~~~-~-p~~iavd~~~--~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~---~ 359 (461)
.|...++.... . ..+ +... . ...+++.|.. +.+.++-.. .+.|...++.... .
T Consensus 183 ----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 183 ----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ------------DRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp ----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET------------TSCEEEEEESSTTSCCE
T ss_pred ----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC------------CCEEEEEeCCCCCccce
Confidence 23333332221 1 111 1111 1 7788999873 444444333 3445555554332 2
Q ss_pred EEEeeC--CCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 360 STIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 360 ~~l~~~--~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
..+... .-.....+++++.+..|+.+.. .+.|...+++
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 222211 3334678899877777777654 5666666663
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=2.2 Score=45.49 Aligned_cols=184 Identities=11% Similarity=0.100 Sum_probs=99.9
Q ss_pred ceeeeeeeecCCe-EEEEeCCCCeEEEEeCCCCcEEEEecC----CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGH-IYWLDSRLNRIEVCDENGTNRIVLAKD----NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~-ly~~d~~~~~I~~~~~~G~~~~~l~~~----~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.+.+++.|. .++ ||+. ...+.|.+.+..+.....+... ......+|+.|+. | .|+++. . ..+.+.+.
T Consensus 407 ~v~~i~~d~-~g~~lWig-t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g--~lwigt-~--~Gl~~~~~ 478 (795)
T 4a2l_A 407 NIKAVYVDE-KKSLVYIG-THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE-G--NLWLGT-L--SALVRFNP 478 (795)
T ss_dssp CEEEEEEET-TTTEEEEE-ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS-S--CEEEEE-S--SCEEEEET
T ss_pred cEEEEEEcC-CCCEEEEE-eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC-C--CEEEEe-c--CceeEEeC
Confidence 345667773 456 5554 4446788888775544444321 1134678888875 5 577766 2 46888777
Q ss_pred CCCCcEEEEec----cc--ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 225 DGSNRSTIIST----KI--YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 225 dG~~~~~i~~~----~~--~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
+....+.+... .+ .....|+.|. .++||++.. .+ +.+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~-~G-----------------------------------l~~ 521 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE-EG-----------------------------------LSV 521 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES-SC-----------------------------------EEE
T ss_pred CCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeC-Cc-----------------------------------eEE
Confidence 65333322211 11 2456677774 667777654 21 333
Q ss_pred EeCCCCceEEEE----eCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-CCC--
Q psy17325 299 ANMDGSNASILV----SGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKI-- 367 (461)
Q Consensus 299 ~~~~g~~~~~l~----~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~~l-- 367 (461)
.+.+.... .+. ...+ ..+|..|. .|.|+++... .|.+.+.+....+.+.. .++
T Consensus 522 ~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigT~~--------------Gl~~~d~~~~~~~~~~~~~gl~~ 585 (795)
T 4a2l_A 522 FKQEGLDI-QKASILPVSNVTKLFTNCIYEAS-NGIIWVGTRE--------------GFYCFNEKDKQIKRYNTTNGLPN 585 (795)
T ss_dssp EEEETTEE-EECCCSCSCGGGGSCEEEEEECT-TSCEEEEESS--------------CEEEEETTTTEEEEECGGGTCSC
T ss_pred EeCCCCeE-EEecCCCCCCCCCCeeEEEEECC-CCCEEEEeCC--------------CceeECCCCCcEEEeCCCCCCch
Confidence 33333222 111 0111 56778884 6777776543 35555544332222211 122
Q ss_pred CCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 368 YWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 368 ~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
....+|+.| .+++||++- .+-|.+++.
T Consensus 586 ~~i~~i~~d-~~g~lWi~t--~~Gl~~~~~ 612 (795)
T 4a2l_A 586 NVVYGILED-SFGRLWLST--NRGISCFNP 612 (795)
T ss_dssp SCEEEEEEC-TTSCEEEEE--TTEEEEEET
T ss_pred hheEEEEEC-CCCCEEEEc--CCceEEEcC
Confidence 235678888 678898875 356888888
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.97 Score=42.20 Aligned_cols=146 Identities=11% Similarity=0.031 Sum_probs=78.3
Q ss_pred ceeeeeeeec---CCeEEEEeCCCCeEEEEeCC-CCcEEEEec----CCCCCceeEEEcCCCC--ceEEEEeecCCCCcE
Q psy17325 150 LVEGLAYDWI---GGHIYWLDSRLNRIEVCDEN-GTNRIVLAK----DNITQPRGMMLDPSPG--TRWLFWTDWGENPRI 219 (461)
Q Consensus 150 ~p~~iavd~~---~~~ly~~d~~~~~I~~~~~~-G~~~~~l~~----~~~~~p~~ia~d~~~g--~~~ly~td~~~~~~I 219 (461)
.+.++++.+. +..++++-...+.|.+.+.. +.....+.. ........+++.|... +++|+.+. ....|
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~dg~i 97 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG--SRGII 97 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE--TTCEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec--CCCEE
Confidence 3455666652 34444444555688888876 433333321 1123467888877631 11444443 44678
Q ss_pred EEEecCCCCcEEEEecccccceeEEeec-cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 220 ERIGMDGSNRSTIISTKIYWPNGLTLDI-ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 220 ~~~~~dG~~~~~i~~~~~~~P~glavD~-~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
...++........+.........|++.+ ....|+.+.. . +.|..
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-d----------------------------------g~i~i 142 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-D----------------------------------HALRL 142 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-T----------------------------------SCEEE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-C----------------------------------CeEEE
Confidence 8888775444333443445678888887 4444444333 2 23555
Q ss_pred EeCCCCceEEEEe---CC-e-eeeEEEeccCCeEEEeec
Q psy17325 299 ANMDGSNASILVS---GQ-L-YEALALDLENGMLYYSTL 332 (461)
Q Consensus 299 ~~~~g~~~~~l~~---~~-~-p~~iavd~~~~~lY~t~~ 332 (461)
.++........+. .. . +..++++|.+..|+.+..
T Consensus 143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 181 (366)
T 3k26_A 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM 181 (366)
T ss_dssp EETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC
Confidence 5555433333331 11 1 888999987666655443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=95.87 E-value=1.3 Score=42.41 Aligned_cols=72 Identities=6% Similarity=-0.081 Sum_probs=45.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
.+..+++.+.+. +.++-..++.|.+.++........+.........+++.|... +|+.+. ....|...++..
T Consensus 141 ~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~--~d~~v~iwd~~~ 212 (420)
T 3vl1_A 141 EITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR--NVLSAS--LDGTIRLWECGT 212 (420)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--EEEEEE--TTSCEEEEETTT
T ss_pred ccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--EEEEEc--CCCcEEEeECCC
Confidence 456677776444 455556678999999764433333333335678999999866 666554 335677666653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.23 Score=48.73 Aligned_cols=154 Identities=11% Similarity=0.086 Sum_probs=89.8
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec--ccccceeEEeeccCCeeEEecCCCceeeeccccee
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
....|+++|..+ .+..+- +....|...+++......++.. .-....+|++.+.++.++++-...
T Consensus 121 ~V~~l~~~P~~~--~~lasG-s~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D----------- 186 (435)
T 4e54_B 121 RATSLAWHPTHP--STVAVG-SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME----------- 186 (435)
T ss_dssp CEEEEEECSSCT--TCEEEE-ETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----------
T ss_pred CEEEEEEeCCCC--CEEEEE-eCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----------
Confidence 356788888655 444443 2346777777765444333321 233567888887555544444333
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCC
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGEN 346 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~ 346 (461)
+.|...++.+...+++..... ...+++++.+..|.... . .
T Consensus 187 -----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~------------d 230 (435)
T 4e54_B 187 -----------------------GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-N------------V 230 (435)
T ss_dssp -----------------------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-S------------S
T ss_pred -----------------------CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-C------------C
Confidence 245556666665555554332 56788888666554432 2 4
Q ss_pred CceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 347 PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 347 ~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+.|...+++|.....+. ..-....+|++.+.+..++.+-...+.|...++
T Consensus 231 g~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 231 GNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp SBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred CcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 56666666665443332 334456788898777777776555566766666
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.75 E-value=2.2 Score=45.26 Aligned_cols=224 Identities=10% Similarity=-0.048 Sum_probs=112.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-------CC--CCCceeEEEcCCCCceEEEEeecCCCCcEEE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-------DN--ITQPRGMMLDPSPGTRWLFWTDWGENPRIER 221 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-------~~--~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~ 221 (461)
+..|..|. .++|++. +..+.|.+.+........+.. .. .....+|+.|.. | .||+... ...|.+
T Consensus 315 v~~i~~D~-~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g--~lWigt~--~~Gl~~ 387 (781)
T 3v9f_A 315 ARYIFQDS-FNNIWIG-TWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-G--KLWIGTD--GGGINV 387 (781)
T ss_dssp EEEEEECS-SCCEEEE-EBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT-S--CEEEEEB--SSCEEE
T ss_pred EEEEEEeC-CCCEEEE-ecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC-C--CEEEEeC--CCcEEE
Confidence 45566774 4555544 334567777766544333321 11 134678888875 5 5777542 346777
Q ss_pred EecCCCCcEEEEe-c--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeE
Q psy17325 222 IGMDGSNRSTIIS-T--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 222 ~~~dG~~~~~i~~-~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~ 298 (461)
.+......+.+.. . .......|+.|. .++|++..... -+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWigt~~~-----------------------------------Gl~~ 431 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFGTYLG-----------------------------------NISY 431 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECT-TSCEEEEETTE-----------------------------------EEEE
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEEeccC-----------------------------------CEEE
Confidence 7665322111110 0 112345677774 56666654322 2444
Q ss_pred EeCCCCceEEEEeC----CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCC-----CCC
Q psy17325 299 ANMDGSNASILVSG----QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTK-----IYW 369 (461)
Q Consensus 299 ~~~~g~~~~~l~~~----~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~-----l~~ 369 (461)
.+......+.+... ..+..|+.|. .+.||++... .|.+.+.+....+.+.... ...
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~~--------------Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (781)
T 3v9f_A 432 YNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTHA--------------GVFVIDLASKKVIHHYDTSNSQLLENF 496 (781)
T ss_dssp ECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEETT--------------EEEEEESSSSSCCEEECTTTSSCSCSC
T ss_pred EcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEECC--------------ceEEEeCCCCeEEecccCcccccccce
Confidence 44433222222111 1167788884 6777776543 3555554433332222111 245
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCce
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEF 445 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~ 445 (461)
+.+|+.| .+++||++-... -+.+++. .+.....+.. ..++. .....+|..+ ++.||++.. .+.
T Consensus 497 i~~i~~d-~~g~lWigt~~~-Gl~~~~~--~~~~~~~~~~-~~~l~-------~~~i~~i~~d~~g~lWi~T~-~Gl 560 (781)
T 3v9f_A 497 VRSIAQD-SEGRFWIGTFGG-GVGIYTP--DMQLVRKFNQ-YEGFC-------SNTINQIYRSSKGQMWLATG-EGL 560 (781)
T ss_dssp EEEEEEC-TTCCEEEEESSS-CEEEECT--TCCEEEEECT-TTTCS-------CSCEEEEEECTTSCEEEEET-TEE
T ss_pred eEEEEEc-CCCCEEEEEcCC-CEEEEeC--CCCeEEEccC-CCCCC-------CCeeEEEEECCCCCEEEEEC-CCc
Confidence 7789998 678898875533 4777777 4443233221 12221 1123566554 467777655 554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=2.4 Score=44.39 Aligned_cols=208 Identities=10% Similarity=0.108 Sum_probs=106.4
Q ss_pred ceeeeeeeecCCeEEE-EeCC-C--CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecC-----------
Q psy17325 150 LVEGLAYDWIGGHIYW-LDSR-L--NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWG----------- 214 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~-~d~~-~--~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~----------- 214 (461)
...++++.+.++.|-+ .+.. . ..|.+.++++........... +..+++.. ... .||++...
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~--~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV-KFSGISWL-GNE--GFFYSSYDKPDGSELSART 205 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTT--EEEEEESSCCC-------C
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc-eeccEEEe-CCC--EEEEEEecCcccccccccC
Confidence 3456677776665544 4432 2 368888987665333211111 01234444 333 56665422
Q ss_pred CCCcEEEEecCCCCc--EEEEeccc---ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCC
Q psy17325 215 ENPRIERIGMDGSNR--STIISTKI---YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGG 289 (461)
Q Consensus 215 ~~~~I~~~~~dG~~~--~~i~~~~~---~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~ 289 (461)
...+|++.++..... +.+....- .+-.++++.+.++.|+++......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---------------------------- 257 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS---------------------------- 257 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS----------------------------
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC----------------------------
Confidence 125688887764322 33333211 123467777777777665432210
Q ss_pred CCcceeeeEEeCCCC--ceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe---EEEee
Q psy17325 290 NGVPLKIGKANMDGS--NASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR---STIIS 364 (461)
Q Consensus 290 ~~~~~~I~~~~~~g~--~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~---~~l~~ 364 (461)
...|+..++++. ..+.+.......--.+++.++.||+.... -+.+.+|+++++++... +.++.
T Consensus 258 ---~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~---------~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 258 ---GNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNR---------DAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp ---CCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECT---------TCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred ---CcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECC---------CCCCCEEEEEeCCCCCccccEEEec
Confidence 024666776544 23333322111111155667777764322 12357899999887654 55553
Q ss_pred CCCCCceeEEEecCCCeEEEEcCCC--CeEEEEEecCCCCeEEE
Q psy17325 365 TKIYWPNGLTLDIATRRVYFADSKL--DFIDFCNYDGTGRQQVI 406 (461)
Q Consensus 365 ~~l~~p~glaiD~~~~~ly~~d~~~--~~I~~~~~~g~g~~~~~ 406 (461)
..-. .. .+++.+++|+++.... .+|..+++ +|.....
T Consensus 326 ~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~--~g~~~~~ 364 (693)
T 3iuj_A 326 ERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDY--EGKRVRE 364 (693)
T ss_dssp CCSS-CE--EEEEETTEEEEEEEETTEEEEEEECT--TSCEEEE
T ss_pred CCCC-EE--EEEEECCEEEEEEEECCeeEEEEEEC--CCCeeEE
Confidence 3322 22 5555788888764433 47888888 4554433
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=2.6 Score=44.57 Aligned_cols=196 Identities=9% Similarity=0.053 Sum_probs=101.5
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEE--EecCCCCCceeEEEcCC--CCceEEEEeecCCCCcEEEEecCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIV--LAKDNITQPRGMMLDPS--PGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~--l~~~~~~~p~~ia~d~~--~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
+..+++.+.+..| .+-..++.|.+.++.+..... .+...-.....+++.+. .. +|+.+. ..+.|...++.+
T Consensus 12 V~~l~~s~dg~~l-atg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s--~Dg~I~vwd~~~ 86 (753)
T 3jro_A 12 IHDAVLDYYGKRL-ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCS--YDGKVLIWKEEN 86 (753)
T ss_dssp EEEECCCSSSCCE-EEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCS--EEEEEE--TTSCEEEEEEET
T ss_pred eEEEEECCCCCeE-EEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCC--EEEEEe--CCCeEEEEECCC
Confidence 4456666544444 444557888888876443222 23333345678888776 34 555544 345777777765
Q ss_pred CCcEEE--EecccccceeEEeecc--CCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 227 SNRSTI--ISTKIYWPNGLTLDIA--TRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 227 ~~~~~i--~~~~~~~P~glavD~~--~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
.....+ ..........+++.+. +..|+.+.... .|...++.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----------------------------------~I~vwdl~ 131 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----------------------------------KVSVVEFK 131 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----------------------------------EEEEEECC
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----------------------------------cEEEEEee
Confidence 432222 2223345678888876 44554444332 23444433
Q ss_pred CC--ceEEEEeCC-e-eeeEEEecc------------CCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe-EEE---
Q psy17325 303 GS--NASILVSGQ-L-YEALALDLE------------NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR-STI--- 362 (461)
Q Consensus 303 g~--~~~~l~~~~-~-p~~iavd~~------------~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~-~~l--- 362 (461)
.. ......... . ...+++.|. ++.+.++-.. .+.|...++..... ..+
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~------------dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA------------DNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET------------TSCEEEEEEETTTTEEEEEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC------------CCeEEEEeccCCcccceeeee
Confidence 32 111112211 1 667777764 2333333332 44555555543321 111
Q ss_pred eeCCCCCceeEEEecCC--CeEEEEcCCCCeEEEEEec
Q psy17325 363 ISTKIYWPNGLTLDIAT--RRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 363 ~~~~l~~p~glaiD~~~--~~ly~~d~~~~~I~~~~~~ 398 (461)
+...-....+|++.+.. +++.++-...+.|...++.
T Consensus 200 ~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred ecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 11334457789998663 5555555556778888873
|
| >2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0057 Score=63.00 Aligned_cols=37 Identities=32% Similarity=0.679 Sum_probs=29.2
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCDLAECKHKFGLCS 41 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~~~~C~~~~~~C~ 41 (461)
++.||+..++|||..||+|++|| ..|. .|....+.|.
T Consensus 213 ~~~ci~~~~~Cdg~~dC~d~sDE-~~C~--~c~~~~~~C~ 249 (565)
T 2xrc_A 213 NGKYISQMKACDGINDCGDQSDE-LCCK--ACQGKGFHCK 249 (565)
T ss_dssp TSCBCCTTSTTSSSCCSSSSSSS-SSBS--SCSSSCEEET
T ss_pred CCCccCHHHcCCCcccCCCCccc-cccc--ccCCCceecC
Confidence 57899999999999999999999 4574 2655544453
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0075 Score=40.54 Aligned_cols=37 Identities=24% Similarity=0.512 Sum_probs=25.9
Q ss_pred CCcccCC-CCCCC--CCce--eCCCCceEeCCCCCeecCCCCceec
Q psy17325 30 LAECKHK-FGLCS--NTCH--PTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 30 ~~~C~~~-~~~C~--~~C~--~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
+++|.++ ...|. ..|. +..++|.|.|++||. +..|+.
T Consensus 3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce~ 44 (53)
T 1egf_A 3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCc----CCcCCc
Confidence 4566653 12454 4698 778999999999995 567753
|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0054 Score=42.95 Aligned_cols=41 Identities=27% Similarity=0.547 Sum_probs=28.7
Q ss_pred CcccCCCCCCCCCcee-----CCCCceEeCCCCCeecCCCCcee-cCccee
Q psy17325 31 AECKHKFGLCSNTCHP-----TPLGALCTCPPGEILSNDSVTCQ-DMNECE 75 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~-----~~~~~~C~C~~G~~l~~~~~~C~-d~~eC~ 75 (461)
++|..+++.-...|.+ ..++|.|.|++||. +..|+ ++++|.
T Consensus 7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~----G~~Ce~~i~~~~ 53 (63)
T 1hae_A 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCTENVPMKV 53 (63)
T ss_dssp CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSCEECCSSC
T ss_pred CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCc----CCccCcCcCccc
Confidence 3565554333457886 56789999999996 67885 677664
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=95.56 E-value=2.2 Score=45.01 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=44.9
Q ss_pred eEEEeccCCeEE-EeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCcee-EEEecCCCeEEEEcCC------
Q psy17325 317 ALALDLENGMLY-YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNG-LTLDIATRRVYFADSK------ 388 (461)
Q Consensus 317 ~iavd~~~~~lY-~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~g-laiD~~~~~ly~~d~~------ 388 (461)
..+..|.+..|+ |. ++......|+..+++|...+.|. ..-..... +.+| +++||++-..
T Consensus 323 ~p~fspDG~~l~~~~----------s~~~G~~~l~~~~~~~~~~~~lT-~g~~~v~~~~~~d--~~~i~f~~~~~~~~~~ 389 (740)
T 4a5s_A 323 EPHFTLDGNSFYKII----------SNEEGYRHICYFQIDKKDCTFIT-KGTWEVIGIEALT--SDYLYYISNEYKGMPG 389 (740)
T ss_dssp CCEECTTSSEEEEEE----------ECTTSCEEEEEEETTCSSCEESC-CSSSCEEEEEEEC--SSEEEEEESCGGGCTT
T ss_pred CceEcCCCCEEEEEE----------EcCCCceEEEEEECCCCceEecc-cCCEEEEEEEEEe--CCEEEEEEecCCCCCc
Confidence 566777666554 32 22233567999999988777665 33222223 3355 7889987543
Q ss_pred CCeEEEEEecCCCCeE
Q psy17325 389 LDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 389 ~~~I~~~~~~g~g~~~ 404 (461)
...|+++++ +|...
T Consensus 390 ~~~ly~v~~--~g~~~ 403 (740)
T 4a5s_A 390 GRNLYKIQL--IDYTK 403 (740)
T ss_dssp CBEEEEEET--TEEEE
T ss_pred eeEEEEEEC--CCCCc
Confidence 358999999 45543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=95.47 E-value=1.5 Score=40.29 Aligned_cols=103 Identities=9% Similarity=0.062 Sum_probs=60.9
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc-
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR- 229 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~- 229 (461)
...+++.+.+ ++.++-..++.|.+.++........+...-.....|++.|... +|+-+. ....|...++.....
T Consensus 58 v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~sgs--~D~~v~lWd~~~~~~~ 132 (304)
T 2ynn_A 58 VRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGS--DDLTVKLWNWENNWAL 132 (304)
T ss_dssp EEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS--EEEEEE--TTSCEEEEEGGGTTEE
T ss_pred EEEEEEeCCC-CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCC--EEEEEC--CCCeEEEEECCCCcch
Confidence 3456666544 4445556678999999765544433444445678999999866 555444 445777777664322
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCC
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~ 258 (461)
...+.........+++.+..+.++.+-..
T Consensus 133 ~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp EEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred hhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 22333333456788888755554444333
|
| >3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0073 Score=61.64 Aligned_cols=27 Identities=41% Similarity=1.046 Sum_probs=24.8
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCD 29 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~ 29 (461)
+|+||+..|+|||..||.|++|| ..|.
T Consensus 75 ~g~Ci~~~~~Cdg~~dC~d~sDE-~~C~ 101 (554)
T 3ojy_A 75 TGRCLKRHLVCNGDQDCLDGSDE-DDCE 101 (554)
T ss_dssp SCCEECGGGTTSSSCCSSSCTTS-SSCC
T ss_pred CCEEcccccccCCcccCCCcccc-ccCC
Confidence 68999999999999999999999 5675
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=95.40 E-value=1.9 Score=40.89 Aligned_cols=206 Identities=8% Similarity=-0.054 Sum_probs=107.5
Q ss_pred ceeeeeeeec---CC---eEEEEeCCCCeEEEEeCCCCc------EEEEecCC----CCCceeEEEc----CCCCceE-E
Q psy17325 150 LVEGLAYDWI---GG---HIYWLDSRLNRIEVCDENGTN------RIVLAKDN----ITQPRGMMLD----PSPGTRW-L 208 (461)
Q Consensus 150 ~p~~iavd~~---~~---~ly~~d~~~~~I~~~~~~G~~------~~~l~~~~----~~~p~~ia~d----~~~g~~~-l 208 (461)
.+..+++.+. .+ ++.++-...+.|.+.++.... ...+.... -.....+++. |... . |
T Consensus 64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l 141 (397)
T 1sq9_A 64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRL 141 (397)
T ss_dssp CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEE
T ss_pred cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEE
Confidence 3566777655 14 555555567889888876554 33332211 2567889999 7755 6 5
Q ss_pred EEeecCCCCcEEEEecCC-------CCcE-----EEE------ecccccceeEEeeccCCeeEEecCCCceeeeccccee
Q psy17325 209 FWTDWGENPRIERIGMDG-------SNRS-----TII------STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 209 y~td~~~~~~I~~~~~dG-------~~~~-----~i~------~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
+.+. ....|...++.. .... .+. ......+..+++.+.+ .|+.+. ..+
T Consensus 142 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg---------- 207 (397)
T 1sq9_A 142 VATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-NNG---------- 207 (397)
T ss_dssp EEEE--TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-TTS----------
T ss_pred EEEe--CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-CCC----------
Confidence 5554 335666666554 2222 332 1223457788998766 444433 332
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC-------Ce-eeeEEEeccCCeEEEeecCceeeEEEee
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG-------QL-YEALALDLENGMLYYSTLKCTRWLFWTD 342 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~-------~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d 342 (461)
.|...++........+.. .. +..++++|.+..|+.+...
T Consensus 208 ------------------------~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d--------- 254 (397)
T 1sq9_A 208 ------------------------TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS--------- 254 (397)
T ss_dssp ------------------------EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE---------
T ss_pred ------------------------cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC---------
Confidence 345555543333223332 22 7889999876655544321
Q ss_pred cCCCCceEEEeecCCCeEEEeeC-------------CCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 343 WGENPRIERIGMDGSNRSTIIST-------------KIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 343 ~~~~~~I~~~~~dG~~~~~l~~~-------------~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
+..+.|...++........+.. .-.....|++.+.+..|+.+ ...+.|...++. ++.....+
T Consensus 255 -~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~-~~~~~~~~ 329 (397)
T 1sq9_A 255 -NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GWDGKLRFWDVK-TKERITTL 329 (397)
T ss_dssp -TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE-ETTSEEEEEETT-TTEEEEEE
T ss_pred -CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE-eCCCeEEEEEcC-CCceeEEE
Confidence 0003344444322221111212 34456788998665555554 456789999983 45443433
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=95.28 E-value=2.1 Score=40.71 Aligned_cols=196 Identities=10% Similarity=0.062 Sum_probs=102.9
Q ss_pred eeeeeeeecCCeEEEEeC-CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCC
Q psy17325 151 VEGLAYDWIGGHIYWLDS-RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSN 228 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~-~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~ 228 (461)
+..+++.+.+..|.++-. ..+.|.+.++........+... ....+|++.|... +|..+. ...+.+.... |..
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-~~V~~v~fspdg~--~l~s~s---~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-GEVKDLHFSTDGK--VVAYIT---GSSLEVISTVTGSC 209 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-SCCCEEEECTTSS--EEEEEC---SSCEEEEETTTCCE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-CceEEEEEccCCc--eEEecc---ceeEEEEEeccCcc
Confidence 456788887777776554 4678999997765544444332 4578999999755 555433 2345555443 322
Q ss_pred cEEEEec-ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 229 RSTIIST-KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 229 ~~~i~~~-~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
....... .-.....+++.+.+..|..+....... ..+...+.......
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~-------------------------------~~i~~~~~~~~~~~ 258 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG-------------------------------IVLTKISIKSGNTS 258 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC-------------------------------EEEEEEEEETTEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce-------------------------------eEEeecccccceec
Confidence 2111111 122356788887666555443222100 01222222222111
Q ss_pred E----EEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-CCCeEEEeeCCCCCceeEEEecCCC
Q psy17325 308 I----LVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-GSNRSTIISTKIYWPNGLTLDIATR 380 (461)
Q Consensus 308 ~----l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-G~~~~~l~~~~l~~p~glaiD~~~~ 380 (461)
. .+.... ...+++.|.+..|..... .+.|.-.++. |+....+....-....+|++.++ +
T Consensus 259 ~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~-------------D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd-g 324 (365)
T 4h5i_A 259 VLRSKQVTNRFKGITSMDVDMKGELAVLASN-------------DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD-S 324 (365)
T ss_dssp EEEEEEEESSCSCEEEEEECTTSCEEEEEET-------------TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT-S
T ss_pred ceeeeeecCCCCCeEeEEECCCCCceEEEcC-------------CCEEEEEECCCCcEEEEecCcccCCEEEEEECCC-C
Confidence 1 111111 678899987766554432 3445444543 22223333233456789999865 4
Q ss_pred eEEEEcCCCCeEEEEEe
Q psy17325 381 RVYFADSKLDFIDFCNY 397 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~ 397 (461)
++..+-+..++|...++
T Consensus 325 ~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKL 341 (365)
T ss_dssp CEEEEEETTSEEEEEEC
T ss_pred CEEEEEeCCCeEEEEEc
Confidence 44455455677777777
|
| >3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0084 Score=61.09 Aligned_cols=27 Identities=41% Similarity=0.984 Sum_probs=24.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCD 29 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~ 29 (461)
+|+||+..|+|||..||.||+|| ..|.
T Consensus 76 ~g~Ci~~~~~Cdg~~dC~d~sdE-~~c~ 102 (537)
T 3ojy_B 76 TGRCVNRRLLCNGDNDCGDQSDE-ANCR 102 (537)
T ss_dssp TCCEECGGGTTSSSCCSSSSCTT-SSCS
T ss_pred CCcEeeccccCCCCCCCCCcccc-ccCC
Confidence 68999999999999999999999 5664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.16 Score=53.37 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=61.5
Q ss_pred eeeeeeeecCCeEEEEeC--------CCCeEEEEeCCCCcE---EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDS--------RLNRIEVCDENGTNR---IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRI 219 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~--------~~~~I~~~~~~G~~~---~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I 219 (461)
...+++.+.++.|.++.. ..+.|.+.++++... ..+. .....+++.|... +|.++. ...|
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~--~la~~~---~~~i 132 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGS--KLAYVY---QNNI 132 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTT--CEEEEE---TTEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----cccccceECCCCC--EEEEEE---CCeE
Confidence 456777777777766543 246899999887654 2221 3366789999865 666654 2478
Q ss_pred EEEecCCCCcEEEEeccc------------------ccceeEEeeccCCeeEEec
Q psy17325 220 ERIGMDGSNRSTIISTKI------------------YWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 220 ~~~~~dG~~~~~i~~~~~------------------~~P~glavD~~~~~ly~~d 256 (461)
+..++++.....+...+. ....++++.+.++.|+++.
T Consensus 133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 888887655444332211 1224788888888887754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=2.4 Score=40.64 Aligned_cols=241 Identities=9% Similarity=0.046 Sum_probs=121.3
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
...+++.+.+ +...+-..++.|.+.++........+.........+++.|... +|+-+. ....|...++......
T Consensus 126 v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s--~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 126 IRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGS--GDRTVRIWDLRTGQCS 200 (393)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETTTTEEE
T ss_pred EEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC--EEEEec--CCCcEEEEECCCCeeE
Confidence 4567776644 4455556678999999887665555554445678899998866 666544 3456777777543322
Q ss_pred EEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-eEEE
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-ASIL 309 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-~~~l 309 (461)
..+. .......+++.+..++++.+-...+. |...++.... ...+
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~----------------------------------v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 201 LTLS-IEDGVTTVAVSPGDGKYIAAGSLDRA----------------------------------VRVWDSETGFLVERL 245 (393)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEEEETTSC----------------------------------EEEEETTTCCEEEEE
T ss_pred EEEE-cCCCcEEEEEECCCCCEEEEEcCCCc----------------------------------EEEEECCCCcEEEee
Confidence 2222 22345677777645554444333322 3333332221 1111
Q ss_pred E------e--CCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE--eecCCCeEEEeeCCCCCceeEEEecCC
Q psy17325 310 V------S--GQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI--GMDGSNRSTIISTKIYWPNGLTLDIAT 379 (461)
Q Consensus 310 ~------~--~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~--~~dG~~~~~l~~~~l~~p~glaiD~~~ 379 (461)
. . ......+++.|.+..|+-.... .....|. .......... ...+.....+. ..-.....+++.+.+
T Consensus 246 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d-~~v~~wd-~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 322 (393)
T 1erj_A 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLD-RSVKLWN-LQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQND 322 (393)
T ss_dssp C------CCCSSCEEEEEECTTSSEEEEEETT-SEEEEEE-C---------------CEEEEEE-CCSSCEEEEEECGGG
T ss_pred cccccCCCCCCCCEEEEEECCCCCEEEEEeCC-CEEEEEE-CCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCC
Confidence 0 0 1116788898876666544332 2233332 1110000000 00111112222 333456678887555
Q ss_pred CeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-------CCEEEEEeCCCceeec
Q psy17325 380 RRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-------NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 380 ~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~lYwtd~~~~~i~~ 448 (461)
..|. +-...+.|...++. +|.....+.. ... ...++++. ++.++.|-...++||+
T Consensus 323 ~~l~-sgs~D~~v~iwd~~-~~~~~~~l~~-h~~-----------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 323 EYIL-SGSKDRGVLFWDKK-SGNPLLMLQG-HRN-----------SVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp CEEE-EEETTSEEEEEETT-TCCEEEEEEC-CSS-----------CEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred CEEE-EEeCCCeEEEEECC-CCeEEEEECC-CCC-----------CEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 5554 43455678888872 4554333322 111 12344443 3567777777787764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.95 Score=42.82 Aligned_cols=103 Identities=7% Similarity=-0.110 Sum_probs=54.8
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc---EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN---RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~---~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
.+..+++.+.+ ++.++-..++.|.+.++.... ....+...-.....+++.|... +|+... ....|...+++.
T Consensus 57 ~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~--~d~~i~iwd~~~ 131 (377)
T 3dwl_C 57 IVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGS--GARVISVCYFEQ 131 (377)
T ss_dssp CEEEEEECTTT-CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEE--SSSCEEECCC--
T ss_pred eEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEe--cCCeEEEEEECC
Confidence 34566776544 444455557888888876544 2222333335578899998755 666555 345677767665
Q ss_pred CC----cEEEEecccccceeEEeeccCCeeEEecC
Q psy17325 227 SN----RSTIISTKIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 227 ~~----~~~i~~~~~~~P~glavD~~~~~ly~~d~ 257 (461)
.. ...+..........+++.+.+..|..+..
T Consensus 132 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 132 ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp ---CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 43 23332213446778899886666655443
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0013 Score=60.09 Aligned_cols=66 Identities=9% Similarity=-0.112 Sum_probs=44.0
Q ss_pred CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee-cCccee----------------------------cCCccc
Q psy17325 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ-DMNECE----------------------------QPGYCS 81 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~-d~~eC~----------------------------~~~~C~ 81 (461)
++|.+.+..-...|++...+|+|.|++||.. ..|+ ++++|. ....|.
T Consensus 100 ~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G----~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~~c~~~i~c~~~~c~ 175 (267)
T 4fbr_A 100 IVAVSIKSNDGGKTLTGTTTYNGEGPIGFKS----EVTDGDTYSVENQWGGSAAPWHSGGVWVLGTRGKQNVINVDAKSN 175 (267)
T ss_dssp EEEEEEECSSTTSEEEEEEEETTSCCEEEEE----EECCCCEEEEEEECSSTTSCCEEEEEEECCSSTTSCEEEEEEECS
T ss_pred cccCCCCCCCCCEEecCCccEEeeCCCCccc----cCCCCCcccccccCCcCCccccCCcceecccccccccccCCCCCC
Confidence 4666655444567999999999999999963 2332 122211 012232
Q ss_pred --CceeeccCCccccCCCCee
Q psy17325 82 --QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 82 --~~C~~~~g~~~C~C~~g~~ 100 (461)
..|.+...+|.|.|++||+
T Consensus 176 ngg~C~dg~~~y~C~Cp~Gf~ 196 (267)
T 4fbr_A 176 DGGKTLSGTMTYNGEGPIGFR 196 (267)
T ss_dssp STTSEEEEEEEETTSCCEEEE
T ss_pred CCCEeeCCCCCeEEeCCCCcc
Confidence 3788888899999999996
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=1.8 Score=38.28 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=44.9
Q ss_pred EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC-C------CcEEEEecccccceeEEeeccCCeeEEe
Q psy17325 184 IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG-S------NRSTIISTKIYWPNGLTLDIATRRVYFA 255 (461)
Q Consensus 184 ~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG-~------~~~~i~~~~~~~P~glavD~~~~~ly~~ 255 (461)
+.+...++.+...||++| +| .||... +..+++.+... . ..+.|-..+...-..+.+|+ ++.||.+
T Consensus 33 ~~iG~~gw~~~~~laf~P-~G--~LYaV~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav 104 (236)
T 1tl2_A 33 TLIGKGGWSNFKFLFLSP-GG--ELYGVL---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV 104 (236)
T ss_dssp EEEESSSCTTCSEEEECT-TS--CEEEEE---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE
T ss_pred cccCccccccceeEEECC-Cc--cEEEEe---CCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe
Confidence 445554577889999999 78 899873 45799988732 1 12444443444457899995 8899988
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=2.5 Score=39.29 Aligned_cols=100 Identities=7% Similarity=-0.044 Sum_probs=60.7
Q ss_pred ceeeeeeeecC--CeEEEEeCCCCeEEEEeCCC--CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIG--GHIYWLDSRLNRIEVCDENG--TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~--~~ly~~d~~~~~I~~~~~~G--~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+..+++.+.. +++.++-..++.|.+.+++. ......+...-.....+++.|... +|+.+. ....|...++.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~--~dg~v~iwd~~ 116 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS--KVFTAS--CDKTAKMWDLS 116 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETT
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC--EEEEEc--CCCcEEEEEcC
Confidence 35567777654 56677767788899988774 433233433335688999999755 666554 34677777877
Q ss_pred CCCcEEEEecccccceeEEe--eccCCeeEE
Q psy17325 226 GSNRSTIISTKIYWPNGLTL--DIATRRVYF 254 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glav--D~~~~~ly~ 254 (461)
......+.. .-.....+++ .+....|+.
T Consensus 117 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~ 146 (368)
T 3mmy_A 117 SNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMT 146 (368)
T ss_dssp TTEEEEEEE-CSSCEEEEEEEECSSCEEEEE
T ss_pred CCCceeecc-ccCceEEEEEEeCCCCCEEEE
Confidence 554433322 2345667777 543333333
|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.019 Score=36.96 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=18.7
Q ss_pred CCce--eCCCCceEeCCCCCeecCCCCcee
Q psy17325 42 NTCH--PTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 42 ~~C~--~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
..|. +..++|.|.|++||. +..|+
T Consensus 15 g~C~~~~~~~~~~C~C~~G~~----G~~Ce 40 (45)
T 1a3p_A 15 GVXMHIESLDSYTCNCVIGYS----GDRCQ 40 (45)
T ss_dssp CEEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred CEEEeecCCCCEEEEcCCCCc----CCcCC
Confidence 4687 567889999999996 56775
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=3.1 Score=40.08 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=39.9
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe-----EEEeeCCC------------CCceeEEEec
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR-----STIISTKI------------YWPNGLTLDI 377 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~-----~~l~~~~l------------~~p~glaiD~ 377 (461)
...++++|.+..++.+-.. .+.|...++..... ..+- ... .....|++.+
T Consensus 229 v~~~~~~p~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSS------------KGTIRLCDMRASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSH 295 (447)
T ss_dssp EEEEEECSSCTTEEEEEET------------TSCEEEEETTTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECT
T ss_pred eEEEEECCCCCcEEEEEeC------------CCeEEEEECcCCccccceeeEec-cCCCccccccccccCceEEEEEECC
Confidence 7788999876344444333 34455555433222 2222 222 2577899987
Q ss_pred CCCeEEEEcCCCCeEEEEEec
Q psy17325 378 ATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~ 398 (461)
.+..|..+.. +.|...++.
T Consensus 296 ~g~~l~~~~~--~~v~iwd~~ 314 (447)
T 3dw8_B 296 SGRYMMTRDY--LSVKVWDLN 314 (447)
T ss_dssp TSSEEEEEES--SEEEEEETT
T ss_pred CCCEEEEeeC--CeEEEEeCC
Confidence 6556665544 889888884
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=2.9 Score=39.49 Aligned_cols=95 Identities=7% Similarity=-0.019 Sum_probs=53.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-------------CCCCCceeEEEcCCCCceEEEEeecCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-------------DNITQPRGMMLDPSPGTRWLFWTDWGEN 216 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-------------~~~~~p~~ia~d~~~g~~~ly~td~~~~ 216 (461)
.+..+++.+..+++.++-..++.|.+.+++......... ........+++.|..+ .++++- +..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~-~~d 121 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT--GMFTSS-SFD 121 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT--TCEEEE-ETT
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC--cEEEEE-eCC
Confidence 455677766345556666667889999877543211110 1234577899988544 344444 344
Q ss_pred CcEEEEecCCCCcEEEEecccccceeEEeecc
Q psy17325 217 PRIERIGMDGSNRSTIISTKIYWPNGLTLDIA 248 (461)
Q Consensus 217 ~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~ 248 (461)
..|...++.......... .......+++.+.
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~ 152 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPV 152 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSS
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecC
Confidence 677777777544333332 1223455666543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.1 Score=54.95 Aligned_cols=87 Identities=8% Similarity=0.044 Sum_probs=55.8
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEecCCC---CCceeEEEcCCCCceEEEEeecC-------CCCcEEEEecCCCCc---E
Q psy17325 164 YWLDSRLNRIEVCDENGTNRIVLAKDNI---TQPRGMMLDPSPGTRWLFWTDWG-------ENPRIERIGMDGSNR---S 230 (461)
Q Consensus 164 y~~d~~~~~I~~~~~~G~~~~~l~~~~~---~~p~~ia~d~~~g~~~ly~td~~-------~~~~I~~~~~dG~~~---~ 230 (461)
|+.....+.|.+.+.++.....+....- .....+++.|... +|.++... ....|+..++++... .
T Consensus 29 ~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~ 106 (719)
T 1z68_A 29 YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN 106 (719)
T ss_dssp EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEEEEECCCCccccce
Confidence 3434457889999988877666654221 1267899999866 77766421 125788888876543 2
Q ss_pred EEEecccccceeEEeeccCCeeEEec
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
.+ . .....+++.+.++.|.++.
T Consensus 107 ~l-~---~~~~~~~~SPDG~~la~~~ 128 (719)
T 1z68_A 107 EL-P---RPIQYLCWSPVGSKLAYVY 128 (719)
T ss_dssp CC-C---SSBCCEEECSSTTCEEEEE
T ss_pred ec-C---cccccceECCCCCEEEEEE
Confidence 22 1 2456788888888887764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.68 E-value=2.7 Score=38.81 Aligned_cols=99 Identities=4% Similarity=-0.123 Sum_probs=58.5
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc----EEEEecCCCCCceeEEEcCCCCce-EEEEeecCCCCcEEEEec-
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN----RIVLAKDNITQPRGMMLDPSPGTR-WLFWTDWGENPRIERIGM- 224 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~----~~~l~~~~~~~p~~ia~d~~~g~~-~ly~td~~~~~~I~~~~~- 224 (461)
+..+++.+.+..|+. -...+.|.+.+++... ...+. ..-.....+++.|. + + +|+... ....|...++
T Consensus 14 v~~~~~s~~~~~l~~-~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~-~~~l~~~~--~dg~i~~wd~~ 87 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLI-TSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDN-T-DLQIYVGT--VQGEILKVDLI 87 (342)
T ss_dssp EEEEEEEGGGTEEEE-EETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEES-S-SEEEEEEE--TTSCEEEECSS
T ss_pred EEEEEEcCCCCEEEE-EcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCC-C-CcEEEEEc--CCCeEEEEEec
Confidence 456677765554544 4456888888876544 33333 22345788999886 4 2 344443 4568888888
Q ss_pred CCCCcEEEEec--ccccceeEEeeccCCeeEEecC
Q psy17325 225 DGSNRSTIIST--KIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 225 dG~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~ 257 (461)
.+.....+ .. .-.....|++.+ .+.|+.+..
T Consensus 88 ~~~~~~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~ 120 (342)
T 1yfq_A 88 GSPSFQAL-TNNEANLGICRICKYG-DDKLIAASW 120 (342)
T ss_dssp SSSSEEEC-BSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred cCCceEec-cccCCCCceEEEEeCC-CCEEEEEcC
Confidence 66544332 22 334567888887 555554443
|
| >1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=36.08 Aligned_cols=30 Identities=33% Similarity=0.766 Sum_probs=23.5
Q ss_pred cCcceecCCccc--CceeeccCCccccCCCCee
Q psy17325 70 DMNECEQPGYCS--QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 70 d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~ 100 (461)
++++|. ...|. ..|.+..++|.|.|++||.
T Consensus 2 d~d~C~-~~pC~ngg~C~~~~~~~~C~C~~G~~ 33 (39)
T 1edm_B 2 DGDQCE-SNPCLNGGSCKDDINSYECWCPFGFE 33 (39)
T ss_dssp CCCTTT-TCCCCTTCEEEEETTEEEEECCTTCC
T ss_pred ccccCC-CCCCCCCCEeEcCCCceEeECCCCCc
Confidence 466775 34565 3799999999999999994
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=4.9 Score=42.85 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=61.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC------CCCCceeEEEcCCCCceEEEEeecCCC----CcE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD------NITQPRGMMLDPSPGTRWLFWTDWGEN----PRI 219 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~------~~~~p~~ia~d~~~g~~~ly~td~~~~----~~I 219 (461)
+..+|++++....+.|+-...+.|.+.+-.|..=+.+... ......+|++||... +.||++-.... ..|
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~-~~i~~~~g~~~~~~~~~v 94 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP-DRLYLAQGRYVGDEWAAF 94 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE-EEEEEEECSCTTSSCCEE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCC-CEEEEEeCccCCCcccEE
Confidence 5677888876544444444456788888777655544331 113467899998532 26777652222 577
Q ss_pred EEEecCCCCcEEEEec-cc-------ccceeEEeeccC-CeeEEec
Q psy17325 220 ERIGMDGSNRSTIIST-KI-------YWPNGLTLDIAT-RRVYFAD 256 (461)
Q Consensus 220 ~~~~~dG~~~~~i~~~-~~-------~~P~glavD~~~-~~ly~~d 256 (461)
++..-.|...+.+... .. .....|++++.+ ++||...
T Consensus 95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~ 140 (789)
T 1sqj_A 95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT 140 (789)
T ss_dssp EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence 7776667666555321 11 012468998764 4555543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.48 E-value=3.6 Score=39.52 Aligned_cols=103 Identities=11% Similarity=0.075 Sum_probs=57.7
Q ss_pred ceeeeeeeec-CCeEEEEeCCCC----eEEEEeCCCCcEEEEecC-CC------------CCceeEEEcCC--CCceEEE
Q psy17325 150 LVEGLAYDWI-GGHIYWLDSRLN----RIEVCDENGTNRIVLAKD-NI------------TQPRGMMLDPS--PGTRWLF 209 (461)
Q Consensus 150 ~p~~iavd~~-~~~ly~~d~~~~----~I~~~~~~G~~~~~l~~~-~~------------~~p~~ia~d~~--~g~~~ly 209 (461)
....|++|+. .++||+.-. .+ .|.+.+-.|..-+.+... .+ ....+|++||. .+ .||
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~l~ 132 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAAR-TGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--TWY 132 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEE-C--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--CEE
T ss_pred ceEEEEECCCCCCeEEEEec-CCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--EEE
Confidence 4678899873 466776543 23 677776666543333211 11 12446889974 45 788
Q ss_pred EeecCCCCcEEEEecCCCCcEEEEec-c-----------------cccceeEEeecc-CCeeEEecC
Q psy17325 210 WTDWGENPRIERIGMDGSNRSTIIST-K-----------------IYWPNGLTLDIA-TRRVYFADS 257 (461)
Q Consensus 210 ~td~~~~~~I~~~~~dG~~~~~i~~~-~-----------------~~~P~glavD~~-~~~ly~~d~ 257 (461)
... ....|+|..-.|...+.+... . ......|++|+. .++||++..
T Consensus 133 ~g~--~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~ 197 (394)
T 3b7f_A 133 AGT--SPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS 197 (394)
T ss_dssp EEE--ETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE
T ss_pred EEe--cCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC
Confidence 754 235788877666655544210 0 011246888864 467777643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.34 E-value=3.3 Score=38.44 Aligned_cols=104 Identities=7% Similarity=-0.005 Sum_probs=64.1
Q ss_pred eeeeeeeecC---CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIG---GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~---~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
+..+++.+.. +.++++-..++.|.+.++........+...-.....|++.|..+ .++.+- +....|...++...
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~s~-~~dg~i~iwd~~~~ 148 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP--NLLLSV-SKDHALRLWNIQTD 148 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT--TEEEEE-ETTSCEEEEETTTT
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC--CEEEEE-eCCCeEEEEEeecC
Confidence 4556666543 45666667788999999775444333444445688999999434 344443 24467888887654
Q ss_pred CcEEEE---ecccccceeEEeeccCCeeEEecC
Q psy17325 228 NRSTII---STKIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 228 ~~~~i~---~~~~~~P~glavD~~~~~ly~~d~ 257 (461)
.....+ ......+..+++++.+..|+.+..
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 181 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM 181 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecC
Confidence 333333 223446788999886666665544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=8.5 Score=42.97 Aligned_cols=220 Identities=9% Similarity=0.028 Sum_probs=111.1
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE-EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR-IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~-~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
+..+++.+.+..+..+. .+.|.+.+...... ..+..........+++.|... .++.+. ....|...+++....
T Consensus 801 v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~--~dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--LAVIAL--SQYCVELWNIDSRLK 874 (1249)
T ss_dssp BCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT--EEEEEC--SSSCEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC--EEEEEe--CCCeEEEEEcCCCce
Confidence 34566666666666554 47888888665443 333334445678899999866 666554 446787777775443
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccce---eeeeccce----e----eeEEEEEecCCCCcceeeeE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI---KTNVNYST----I----FRKLYWIDEGGNGVPLKIGK 298 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~---~~~v~~~~----~----~~~~yw~d~~~~~~~~~I~~ 298 (461)
............++++.+.+..|+.+... +.|..-+... ...+.... . ...+.-.+... .+..
T Consensus 875 ~~~~~~h~~~v~~v~~spdg~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 948 (1249)
T 3sfz_A 875 VADCRGHLSWVHGVMFSPDGSSFLTASDD-QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR-----GLQL 948 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS-----SEEE
T ss_pred eeecCCCccceEEEEECCCCCEEEEEeCC-CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc-----ceEE
Confidence 33334445567889998866666554433 2322211100 00000000 0 00000001100 0111
Q ss_pred EeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecC
Q psy17325 299 ANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIA 378 (461)
Q Consensus 299 ~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~ 378 (461)
....... ...........+++.|.+..+..... .+.|...++............-....++++.+.
T Consensus 949 ~~~~~~~-~~~~~~~~i~~~~~sp~g~~l~~g~~-------------~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 1014 (1249)
T 3sfz_A 949 IAGKTGQ-IDYLPEAQVSCCCLSPHLEYVAFGDE-------------DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014 (1249)
T ss_dssp EEESSCC-EEEECCSCEEEEEECTTSSEEEEEET-------------TSCCEEEETTTTSCEEECCCCSSCCCCEEECSS
T ss_pred EecCcce-EEEcccCcEEEEEEcCCCCEEEEEcC-------------CCCEEEEEcCCCceeeecccCCCceEEEEECCC
Confidence 1111111 11111111667788887766655433 345555555433333333244456778999866
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q psy17325 379 TRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 379 ~~~ly~~d~~~~~I~~~~~ 397 (461)
+..|..+ ...+.|...++
T Consensus 1015 g~~l~s~-~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 1015 GKTLISS-SEDSVIQVWNW 1032 (1249)
T ss_dssp SSCEEEE-CSSSBEEEEET
T ss_pred CCEEEEE-cCCCEEEEEEC
Confidence 6656555 45678888887
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=2 Score=38.03 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=70.1
Q ss_pred cCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCC-------CcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCc
Q psy17325 146 SGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENG-------TNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPR 218 (461)
Q Consensus 146 ~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G-------~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~ 218 (461)
.|+.....+|+++ ++.||.+ ..+.+.+.+... ...+.|...+...-..+.+|+. | .||.+. +.+
T Consensus 38 ~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~-G--~LYav~---dG~ 108 (236)
T 1tl2_A 38 GGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPN-G--YLYAVS---KDK 108 (236)
T ss_dssp SSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTT-S--CEEEEE---TTE
T ss_pred cccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCC-C--CEEEeC---CCE
Confidence 3577888999998 8999999 667899988633 1234454444444678999976 6 699874 379
Q ss_pred EEEEec--CCCCc-----EEEEecccccceeEEeeccCCeeEEec
Q psy17325 219 IERIGM--DGSNR-----STIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 219 I~~~~~--dG~~~-----~~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
|+|.+. ++... +.|...+-..-.-|++|+ .+.||-+.
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~ 152 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH 152 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe
Confidence 999887 44332 344443334457789997 78898877
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=8.6 Score=42.92 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=60.3
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.....+++.+.+..| .+-..++.|.+.+.........+...-.....+++.|... +|..+. ....|...++....
T Consensus 616 ~~v~~~~~s~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~--~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRI-ASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS--YIATCS--ADKKVKIWDSATGK 690 (1249)
T ss_dssp SCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETTTCC
T ss_pred ccEEEEEECCCCCEE-EEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC--EEEEEe--CCCeEEEEECCCCc
Confidence 346677887755555 4445678899999765554444444445688999999866 666554 34578777776544
Q ss_pred cEEEEecccccceeEEeeccCC
Q psy17325 229 RSTIISTKIYWPNGLTLDIATR 250 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~ 250 (461)
....+.........+++.+..+
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSS
T ss_pred eEEEEcCCCCcEEEEEEecCCC
Confidence 3333333344566777766433
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.021 Score=54.29 Aligned_cols=69 Identities=35% Similarity=0.854 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCC--CCceeCCCCceEeCCCCCeecCCCCceecCcceecCCccc--CceeeccCC
Q psy17325 15 KTDCPNGADEGPGCDLAECKHKFGLCS--NTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCS--QMCTNTKGS 90 (461)
Q Consensus 15 ~~dC~dg~de~~~C~~~~C~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~--~~C~~~~g~ 90 (461)
.-.|+.|+- +..|+.+.|. ..|. ..|.. .+.|.|++||. +..|+ +++|. ..|. ..|.. .
T Consensus 198 ~C~C~~G~~-G~~C~~~~C~---~~C~~~G~C~~---~~~C~C~~G~~----G~~C~-~~~C~--~~C~~~g~C~~---~ 260 (324)
T 2ygq_A 198 FCICPPGFY-GVNCDKANCS---TTCFNGGTCFY---PGKCICPPGLE----GEQCE-ISKCP--QPCRNGGKCIG---K 260 (324)
T ss_dssp CEECCTTCB-TTTTCBCCCS---SCCCSSCCBSC---SSCBCCCTTCC----TTTTC-----------------------
T ss_pred EEeCCCCcc-CCCcccCcCC---CCCCCCCeeCC---CCeeeCCCCcc----CCCCC-cCcCC--CcCCCCCEECC---C
Confidence 345777764 3567655564 1343 24543 25677777774 44564 34442 2232 13432 3
Q ss_pred ccccCCCCee
Q psy17325 91 YICSCNEGYV 100 (461)
Q Consensus 91 ~~C~C~~g~~ 100 (461)
+.|.|++||.
T Consensus 261 ~~C~C~~G~~ 270 (324)
T 2ygq_A 261 SKCKCSKGYQ 270 (324)
T ss_dssp ----------
T ss_pred CEEECCCCCc
Confidence 5677777764
|
| >1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.057 Score=41.11 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=45.1
Q ss_pred Ccee-CCCCceEeCCCCCeecCCCCceecCcc-ee-cCCcccC--ceeecc-CCccccCCCCee
Q psy17325 43 TCHP-TPLGALCTCPPGEILSNDSVTCQDMNE-CE-QPGYCSQ--MCTNTK-GSYICSCNEGYV 100 (461)
Q Consensus 43 ~C~~-~~~~~~C~C~~G~~l~~~~~~C~d~~e-C~-~~~~C~~--~C~~~~-g~~~C~C~~g~~ 100 (461)
.|.. .++...|.|..||.. ++..|..++. |. .+++|+. .|.... ....|.|..+|.
T Consensus 23 ~C~r~~~G~e~CrCl~gY~~--dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~ 84 (105)
T 1n1i_A 23 ACYRYLDGTEEWRCLLGFKE--VGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGS 84 (105)
T ss_dssp EEEECTTSCEEEEECTTEEE--CSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred CeEECCCCCEeEEEECCeec--cCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence 4766 678889999999985 7889998888 76 6778964 888774 778899998863
|
| >3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} | Back alignment and structure |
|---|
Probab=93.95 E-value=7.6 Score=41.19 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=63.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-C----------CCCCceeEEEcCCC-CceEEEEeec----
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-D----------NITQPRGMMLDPSP-GTRWLFWTDW---- 213 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~----------~~~~p~~ia~d~~~-g~~~ly~td~---- 213 (461)
+..+|++++...+++|+-...+.|.+..-.|+.=+.+.. . .......|++||.. + .||.+..
T Consensus 22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~--~~~~~~g~~~~ 99 (763)
T 3a0f_A 22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPD--RLYLAQGDYVQ 99 (763)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTT--CEEEEECSCTT
T ss_pred ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCC--EEEEEeccccc
Confidence 567888988775555554555778888777766444433 1 22346789999853 4 6887652
Q ss_pred -CCCCcEEEEecCCCCcEEEEec-cc-----ccc--eeEEeeccC-CeeEEec
Q psy17325 214 -GENPRIERIGMDGSNRSTIIST-KI-----YWP--NGLTLDIAT-RRVYFAD 256 (461)
Q Consensus 214 -~~~~~I~~~~~dG~~~~~i~~~-~~-----~~P--~glavD~~~-~~ly~~d 256 (461)
+....|+|..=.|...+.+... .. ... ..|++++.+ +.||...
T Consensus 100 ~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~ 152 (763)
T 3a0f_A 100 WDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS 152 (763)
T ss_dssp TCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC
T ss_pred CCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe
Confidence 1236777776667666655432 11 111 358898764 5666654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.88 E-value=6.5 Score=41.50 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=55.2
Q ss_pred eeeeeeeecC-CeEEEEeCCCCeEEEEeCCCCc--EEEEecCCCCCceeEEEcCC--CCceEEEEeecCCCCcEEEEecC
Q psy17325 151 VEGLAYDWIG-GHIYWLDSRLNRIEVCDENGTN--RIVLAKDNITQPRGMMLDPS--PGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 151 p~~iavd~~~-~~ly~~d~~~~~I~~~~~~G~~--~~~l~~~~~~~p~~ia~d~~--~g~~~ly~td~~~~~~I~~~~~d 225 (461)
+..+++.+.. ++..++-..++.|.+.++++.. ..............+++.|. .. .++.+. ....|...++.
T Consensus 56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs--~dg~I~vwdl~ 131 (753)
T 3jro_A 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP--LLLVAS--SDGKVSVVEFK 131 (753)
T ss_dssp EEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEE--TTSEEEEEECC
T ss_pred eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCC--EEEEEe--CCCcEEEEEee
Confidence 4456665432 5566666678899999987664 22223333356788999987 44 555444 44677777776
Q ss_pred CCC--cEEEEecccccceeEEeecc
Q psy17325 226 GSN--RSTIISTKIYWPNGLTLDIA 248 (461)
Q Consensus 226 G~~--~~~i~~~~~~~P~glavD~~ 248 (461)
... ..............+++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCC
T ss_pred cCCCcceeEeecCCCceEEEEecCc
Confidence 442 22223333345667777763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=93.86 E-value=3.9 Score=37.59 Aligned_cols=196 Identities=15% Similarity=0.052 Sum_probs=103.8
Q ss_pred cceeeeeeeecCC-eEEEEeCCCCeEEEEeC-CCCcEEEEecC-CCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGG-HIYWLDSRLNRIEVCDE-NGTNRIVLAKD-NITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~-~ly~~d~~~~~I~~~~~-~G~~~~~l~~~-~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..+..+++.+.+. .|+ +-...+.|.+.++ .+.....+... .-.....|++.| .+ .|+.+. ....|...++.
T Consensus 57 ~~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~--~l~s~~--~d~~i~iwd~~ 130 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIY-VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DD--KLIAAS--WDGLIEVIDPR 130 (342)
T ss_dssp SCEEEEEEEESSSEEEE-EEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TT--EEEEEE--TTSEEEEECHH
T ss_pred CceEEEEECCCCCcEEE-EEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CC--EEEEEc--CCCeEEEEccc
Confidence 3466778876555 454 4445789999998 77665444320 335578899998 55 555544 34567666654
Q ss_pred C---------CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceee
Q psy17325 226 G---------SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKI 296 (461)
Q Consensus 226 G---------~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I 296 (461)
. ......+. .-..+..+++.+. .|+.+.... .|
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~~~~~d~-----------------------------------~i 172 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS--RLIVGMNNS-----------------------------------QV 172 (342)
T ss_dssp HHTTBCEEEEESCSSSSS-SCCCEEEEEECSS--EEEEEESTT-----------------------------------EE
T ss_pred ccccccccccCCeeeEEe-eCCceEEEEecCC--cEEEEeCCC-----------------------------------eE
Confidence 2 11100011 1234566666643 255443322 34
Q ss_pred eEEeCCC-Cc--eEEEEeC-Ce-eeeEEEec-cCCeEEEeecCceeeEEEeecCCCCceEEEeecC-------CCeEEEe
Q psy17325 297 GKANMDG-SN--ASILVSG-QL-YEALALDL-ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-------SNRSTII 363 (461)
Q Consensus 297 ~~~~~~g-~~--~~~l~~~-~~-p~~iavd~-~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-------~~~~~l~ 363 (461)
...++.. .. ....... .. +..+++.| .+..|+.+.. .+.|...+++. .....+.
T Consensus 173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-------------dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-------------DGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-------------TSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred EEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-------------CCcEEEEEEcCCCcccccccceeee
Confidence 5555544 21 1222211 11 78888888 6655554433 23343333322 2222332
Q ss_pred eCC--------CCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 364 STK--------IYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 364 ~~~--------l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
... ......+++.+.+..|+.+. ..+.|...++. ++..
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~-~~~~ 285 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQ-TRKK 285 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETT-TTEE
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCc-cHhH
Confidence 111 22677899987666666554 46788888882 3443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=93.81 E-value=4.7 Score=38.31 Aligned_cols=193 Identities=9% Similarity=-0.045 Sum_probs=102.0
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-----CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-----DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-----~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
.+++.+..+...++-+.++.|.+.++........+. ........+++.+..+ .++.+- +....|...++...
T Consensus 162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~sg-s~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA--NMFISG-SCDTTVRLWDLRIT 238 (380)
T ss_dssp CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC--CEEEEE-ETTSCEEEEETTTT
T ss_pred EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC--CEEEEE-ECCCeEEEEECCCC
Confidence 344444445566777788899999976555443332 2223456788877656 666665 44567777776522
Q ss_pred -CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 228 -NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 228 -~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
.....+.........+++.+.+..|.-+ ...+ .|...++.....
T Consensus 239 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~----------------------------------~i~lwd~~~~~~ 283 (380)
T 3iz6_a 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTG-SDDG----------------------------------TCRLFDMRTGHQ 283 (380)
T ss_dssp CCCCEEECCCSSCCCEEEECTTSSEEEEE-CSSS----------------------------------CEEEEETTTTEE
T ss_pred CcceEEECCcCCCeEEEEEecCCCeEEEE-cCCC----------------------------------eEEEEECCCCcE
Confidence 2222233333457789998765554433 3332 244444433222
Q ss_pred EEEEeCC-------e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEe---eCCCCCceeE
Q psy17325 307 SILVSGQ-------L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTII---STKIYWPNGL 373 (461)
Q Consensus 307 ~~l~~~~-------~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~---~~~l~~p~gl 373 (461)
...+... . ...+++.|.+..|+-... .+.|...++.. .....+. ...-.....|
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-------------dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-------------NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-------------TSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred EEEecccccccccccCceEEEEECCCCCEEEEEEC-------------CCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 2222111 1 467888887665554322 33444444322 2222221 1223456788
Q ss_pred EEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 374 TLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 374 aiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++.+++..| ++-...+.|..-++
T Consensus 351 ~~s~dg~~l-~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 351 GLSSDGSAL-CTGSWDKNLKIWAF 373 (380)
T ss_dssp EECSSSSEE-EEECTTSCEEEEEC
T ss_pred EECCCCCEE-EEeeCCCCEEEEec
Confidence 998655544 44455567777776
|
| >2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.017 Score=39.98 Aligned_cols=33 Identities=33% Similarity=0.872 Sum_probs=26.7
Q ss_pred ceecCcceecCCccc----CceeeccCCccccCCCCee
Q psy17325 67 TCQDMNECEQPGYCS----QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 67 ~C~d~~eC~~~~~C~----~~C~~~~g~~~C~C~~g~~ 100 (461)
.|+++++|.. .+|. ..|.+..++|.|.|++||.
T Consensus 7 ~~~~~d~C~s-nPC~nga~gtC~~~~g~y~C~C~~Gy~ 43 (61)
T 2k2s_B 7 LSETPAACSS-NPCGPEAAGTCKETNSGYICRCNQGYR 43 (61)
T ss_dssp CTTSCCHHHH-CSSCSSSCCEEEECSSEEEEECCTTEE
T ss_pred hcCCCCcCcC-CCCcCCCccccccCCCceEeECCCCCc
Confidence 4677888863 4574 3799999999999999997
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.58 E-value=4.8 Score=42.64 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=85.3
Q ss_pred EEEEeecCC---CCcEEEEec---CCC--CcEEEEeccc-------ccceeEEee-ccCCeeEEecCCCceeeeccccee
Q psy17325 207 WLFWTDWGE---NPRIERIGM---DGS--NRSTIISTKI-------YWPNGLTLD-IATRRVYFADSKLDFIDCKSLEIK 270 (461)
Q Consensus 207 ~ly~td~~~---~~~I~~~~~---dG~--~~~~i~~~~~-------~~P~glavD-~~~~~ly~~d~~~~~i~~~~~~~~ 270 (461)
++||+-... .+.++|... +|. ..++++..+. ..-.+.++. +.+++|.|+....+.-.
T Consensus 128 ~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~------- 200 (751)
T 2xe4_A 128 YRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEV------- 200 (751)
T ss_dssp EEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSC-------
T ss_pred EEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCce-------
Confidence 888875322 246788876 665 5666665421 134567888 77777766544321100
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCC-ceEEEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCC
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS-NASILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGEN 346 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~-~~~~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~ 346 (461)
..|++.++++. .. +...+ ..+++..|.++.||++... +.+..
T Consensus 201 -----------------------~~l~v~dl~~g~~~---l~~~~~~~~~~~~WspDg~~l~y~~~d--------~~~~~ 246 (751)
T 2xe4_A 201 -----------------------YTIEFKRISDPSQT---IADKVSGTNGEIVWGPDHTSLFYVTKD--------ETLRE 246 (751)
T ss_dssp -----------------------EEEEEEETTCTTCC---CCCCEEEECSCCEECSSTTEEEEEEEC--------TTCCE
T ss_pred -----------------------EEEEEEECCCCCEe---CCccccCceeeEEEecCCCEEEEEEEC--------CCCCC
Confidence 24788888776 41 11111 3456666666666655321 00112
Q ss_pred CceEEEeecCCCe--EEEee-CCCCCceeEEEecCCCeEEEEcC--CCCeEEEEEec
Q psy17325 347 PRIERIGMDGSNR--STIIS-TKIYWPNGLTLDIATRRVYFADS--KLDFIDFCNYD 398 (461)
Q Consensus 347 ~~I~~~~~dG~~~--~~l~~-~~l~~p~glaiD~~~~~ly~~d~--~~~~I~~~~~~ 398 (461)
.+|++.++++... ..+.. ..-..-.++++.++++.|+++-. ....|+.++++
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 4788888877542 23332 22223456778878888888643 34578888884
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.046 Score=53.94 Aligned_cols=50 Identities=34% Similarity=0.892 Sum_probs=33.4
Q ss_pred CceeCCCCceEeCCCCCeecCCCCceecC-----------cceecCCcccC--ceeeccCCccccCCCCee
Q psy17325 43 TCHPTPLGALCTCPPGEILSNDSVTCQDM-----------NECEQPGYCSQ--MCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 43 ~C~~~~~~~~C~C~~G~~l~~~~~~C~d~-----------~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~ 100 (461)
.|.+ ..+.|.|++||. +..|+.. ++|...+.|.. .| ..+++.|.|++||.
T Consensus 210 ~C~~--~~g~C~C~~G~~----G~~Ce~~C~~g~~g~~C~~~C~~~~~C~~~g~C--~~~~~~C~C~~G~~ 272 (423)
T 2gy5_A 210 VCHE--DTGECICPPGFM----GRTCEKACELHTFGRTCKERCSGQEGCKSYVFC--LPDPYGCSCATGWK 272 (423)
T ss_dssp EECT--TTCCEECCTTEE----STTSCEECCTTEESTTSCEECCSTTTTTTCCEE--ETTTTEEECCBTCB
T ss_pred EEEC--CCCcEeCCCCcc----CCCcccccCCCCCCCCcCccCCCCCCCCCCCEE--CCCCCeEEeCCCcc
Confidence 4654 467999999996 5566531 24443445543 44 35788999999995
|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.021 Score=37.02 Aligned_cols=26 Identities=27% Similarity=0.653 Sum_probs=18.8
Q ss_pred CCC-CceeCC--CCceEeCCCCCeecCCCCcee
Q psy17325 40 CSN-TCHPTP--LGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 40 C~~-~C~~~~--~~~~C~C~~G~~l~~~~~~C~ 69 (461)
|.+ .|.... ++|.|.|++||. |..|+
T Consensus 14 C~nG~C~~~~~~~~~~C~C~~Gyt----G~~Ce 42 (46)
T 1k36_A 14 CLHGQCIYLVDMSQNYCRCEVGYT----GVRCE 42 (46)
T ss_dssp CSSEEEEEETTTTEEEEEECTTCS----STTSC
T ss_pred CCCCEeeccCCCCCEEEECCCCCc----cCCCC
Confidence 443 687644 679999999995 56675
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=9.2 Score=40.55 Aligned_cols=223 Identities=8% Similarity=0.033 Sum_probs=116.2
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC--------CCCCceeEEEcCCCCceE-EEEeecCCCCcEEE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD--------NITQPRGMMLDPSPGTRW-LFWTDWGENPRIER 221 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~--------~~~~p~~ia~d~~~g~~~-ly~td~~~~~~I~~ 221 (461)
+.+++.|. .++|++. +..+.|.+.+............ ......+|+.|+. | . ||+.. ....|.+
T Consensus 359 V~~i~~d~-~g~lWiG-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g--~~lWigt--~~~Gl~~ 431 (795)
T 4a2l_A 359 VSCIVEDK-DKNLWIG-TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK-K--SLVYIGT--HAGGLSI 431 (795)
T ss_dssp EEEEEECT-TSCEEEE-ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT-T--TEEEEEE--TTTEEEE
T ss_pred eEEEEECC-CCCEEEE-ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC-C--CEEEEEe--CcCceeE
Confidence 45566663 4566554 3345688887765443333211 1234678888875 4 5 66654 2247888
Q ss_pred EecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 222 IGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 222 ~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
.+......+.+... .......|+.|. .++|+++.. .+ +.
T Consensus 432 ~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~-~G-----------------------------------l~ 474 (795)
T 4a2l_A 432 LHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL-SA-----------------------------------LV 474 (795)
T ss_dssp EETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES-SC-----------------------------------EE
T ss_pred EeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec-Cc-----------------------------------ee
Confidence 88775444333211 112456777775 567776654 21 44
Q ss_pred EEeCCCCceEEEEeC----C----eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee----C
Q psy17325 298 KANMDGSNASILVSG----Q----LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS----T 365 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~----~----~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~----~ 365 (461)
+.+++....+.+... . ....|..|. .|.||++... .|.+.+.+.... .+.. .
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~--------------Gl~~~~~~~~~~-~~~~~~~~~ 538 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGEE--------------GLSVFKQEGLDI-QKASILPVS 538 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEESS--------------CEEEEEEETTEE-EECCCSCSC
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeCC--------------ceEEEeCCCCeE-EEecCCCCC
Confidence 444443322222211 1 167788884 6677776543 355555443322 2110 1
Q ss_pred CC--CCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCC
Q psy17325 366 KI--YWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEG 442 (461)
Q Consensus 366 ~l--~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~ 442 (461)
.+ ....+|+.| .+++||++-.+ -|.+++. ...... ......++.. ....+|..+ +|.||++. .
T Consensus 539 ~l~~~~i~~i~~d-~~g~lWigT~~--Gl~~~d~--~~~~~~-~~~~~~gl~~-------~~i~~i~~d~~g~lWi~t-~ 604 (795)
T 4a2l_A 539 NVTKLFTNCIYEA-SNGIIWVGTRE--GFYCFNE--KDKQIK-RYNTTNGLPN-------NVVYGILEDSFGRLWLST-N 604 (795)
T ss_dssp GGGGSCEEEEEEC-TTSCEEEEESS--CEEEEET--TTTEEE-EECGGGTCSC-------SCEEEEEECTTSCEEEEE-T
T ss_pred CCCCCeeEEEEEC-CCCCEEEEeCC--CceeECC--CCCcEE-EeCCCCCCch-------hheEEEEECCCCCEEEEc-C
Confidence 11 245678888 67888887553 5888887 333322 2232333321 123566665 56787765 3
Q ss_pred Cceee
Q psy17325 443 AEFLK 447 (461)
Q Consensus 443 ~~~i~ 447 (461)
.+..+
T Consensus 605 ~Gl~~ 609 (795)
T 4a2l_A 605 RGISC 609 (795)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 44443
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=93.39 E-value=5.8 Score=38.04 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=58.5
Q ss_pred ceeeeeeeec--CCeEEEEeCCCCeEEEEeCCCCcEEEEecC------------------CCCCceeEEEcCC-CCceEE
Q psy17325 150 LVEGLAYDWI--GGHIYWLDSRLNRIEVCDENGTNRIVLAKD------------------NITQPRGMMLDPS-PGTRWL 208 (461)
Q Consensus 150 ~p~~iavd~~--~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~------------------~~~~p~~ia~d~~-~g~~~l 208 (461)
...+|++|+. .+.||..-. .+.|.+.+-.|..-+.+... .......|++||. .+ .|
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~--~l 192 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK--HL 192 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT--CE
T ss_pred ceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC--EE
Confidence 3456888864 577776532 46788887777654443210 0112358999985 34 68
Q ss_pred EEeecCCCCcEEEEecCCCCcEEEEec--c--c--------ccceeEEeeccC-CeeEEec
Q psy17325 209 FWTDWGENPRIERIGMDGSNRSTIIST--K--I--------YWPNGLTLDIAT-RRVYFAD 256 (461)
Q Consensus 209 y~td~~~~~~I~~~~~dG~~~~~i~~~--~--~--------~~P~glavD~~~-~~ly~~d 256 (461)
|+... ...|++..-.|...+.+... . + .....|++|+.+ +.||+..
T Consensus 193 ~vg~~--~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 193 YIGMS--SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp EEEEE--TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred EEEEC--CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 87641 24687776666655544221 0 0 124678888753 5666654
|
| >1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.038 Score=37.00 Aligned_cols=36 Identities=33% Similarity=0.953 Sum_probs=26.0
Q ss_pred cCcceecC--CcccC--cee--eccCCccccCCCCeeeeCCCCcee
Q psy17325 70 DMNECEQP--GYCSQ--MCT--NTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 70 d~~eC~~~--~~C~~--~C~--~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
++++|... ..|.+ .|. +..++|.|.|++||. +..|.
T Consensus 2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~----G~~Ce 43 (53)
T 1egf_A 2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS----GDRCQ 43 (53)
T ss_dssp EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCC----SSSSC
T ss_pred CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCc----CCcCC
Confidence 45677532 36753 788 788999999999994 56674
|
| >1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A | Back alignment and structure |
|---|
Probab=93.12 E-value=0.075 Score=40.20 Aligned_cols=56 Identities=20% Similarity=0.482 Sum_probs=42.9
Q ss_pred Ccee-CCCCceEeCCCCCeecCCCCceecC--ccee-cCCcccC--ceeecc-----CCccccCCCCee
Q psy17325 43 TCHP-TPLGALCTCPPGEILSNDSVTCQDM--NECE-QPGYCSQ--MCTNTK-----GSYICSCNEGYV 100 (461)
Q Consensus 43 ~C~~-~~~~~~C~C~~G~~l~~~~~~C~d~--~eC~-~~~~C~~--~C~~~~-----g~~~C~C~~g~~ 100 (461)
.|.. .++...|.|.+||.. ++..|..+ ..|. .+++|+. .|.... +...|.|.+||.
T Consensus 17 ~C~r~~~g~e~C~C~~gy~g--dg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~ 83 (99)
T 1ob1_C 17 GCFRHLDEREECKCLLNYKQ--EGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS 83 (99)
T ss_dssp EEECCTTSCCEEEECTTEEE--ETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred CeEEcCCCCEEEEecCCeec--CCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence 3555 567889999999985 67889877 5787 4578964 787764 568899999863
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=92.91 E-value=6 Score=36.86 Aligned_cols=94 Identities=5% Similarity=-0.034 Sum_probs=54.7
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCc-------EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEE
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTN-------RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTI 232 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~-------~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i 232 (461)
.+.+.++-..++.|.+.++.... ....+.+.......+++.|... +|+-+. ....|...++........
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s~s--~D~~v~lwd~~~~~~~~~ 113 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAISSS--WDKTLRLWDLRTGTTYKR 113 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEEEE--TTSEEEEEETTSSCEEEE
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEEEc--CCCcEEEEECCCCcEEEE
Confidence 45666677777888888765321 1122333334577899998755 555443 345777777654332222
Q ss_pred EecccccceeEEeeccCCeeEEecC
Q psy17325 233 ISTKIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 233 ~~~~~~~P~glavD~~~~~ly~~d~ 257 (461)
+.........+++.+.++.|+-+..
T Consensus 114 ~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 114 FVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp EECCCSCEEEEEECSSTTEEEEEET
T ss_pred EcCCCCcEEEEEECCCCCEEEEEcC
Confidence 2333345678899887766665543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.72 E-value=6.6 Score=36.89 Aligned_cols=195 Identities=10% Similarity=-0.034 Sum_probs=101.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC-
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN- 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~- 228 (461)
.+..+++.+. +...++-..++.|.+.+.........+.........+++.|... .|... +....|....+....
T Consensus 66 ~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~--~lasg--~~d~~i~v~~~~~~~~ 140 (354)
T 2pbi_B 66 KVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC--AIACG--GLDNKCSVYPLTFDKN 140 (354)
T ss_dssp CEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS--EEEEE--STTSEEEEEECCCCTT
T ss_pred eEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC--EEEEe--eCCCCEEEEEEecccc
Confidence 3556666654 44555666788999998655444333333334577899999755 44433 334455555443211
Q ss_pred -----cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC
Q psy17325 229 -----RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG 303 (461)
Q Consensus 229 -----~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g 303 (461)
....+.........+++.+.+..|+-+.... .|...++..
T Consensus 141 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~-----------------------------------~v~lwd~~~ 185 (354)
T 2pbi_B 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG-----------------------------------TCALWDVES 185 (354)
T ss_dssp CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS-----------------------------------EEEEEETTT
T ss_pred ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC-----------------------------------cEEEEeCCC
Confidence 1111222233456677776555555443322 344455443
Q ss_pred Cce-EEEEeCCe-eeeEEEecc-CCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC
Q psy17325 304 SNA-SILVSGQL-YEALALDLE-NGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 380 (461)
Q Consensus 304 ~~~-~~l~~~~~-p~~iavd~~-~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~ 380 (461)
... ..+..... ...+++.|. .+.++++-.. .+.|...++........+...-....++++.+.+.
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~------------Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~ 253 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC------------DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEET------------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC------------CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC
Confidence 332 22222122 566777664 2444444433 34555555533322222223445677889986555
Q ss_pred eEEEEcCCCCeEEEEEe
Q psy17325 381 RVYFADSKLDFIDFCNY 397 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~ 397 (461)
.|..+ ...+.|...++
T Consensus 254 ~l~s~-s~D~~v~lwd~ 269 (354)
T 2pbi_B 254 AFASG-SDDATCRLYDL 269 (354)
T ss_dssp EEEEE-ETTSCEEEEET
T ss_pred EEEEE-eCCCeEEEEEC
Confidence 54444 45678888888
|
| >3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.039 Score=37.22 Aligned_cols=36 Identities=22% Similarity=0.695 Sum_probs=24.4
Q ss_pred ecCcceecCCccc--Ccee-----eccCCccccCCCCeeeeCCCCcee
Q psy17325 69 QDMNECEQPGYCS--QMCT-----NTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 69 ~d~~eC~~~~~C~--~~C~-----~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
.+++||. ..+|. ..|. +..++|.|.|++||. +..|.
T Consensus 6 ~~~~eC~-s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~----G~~CE 48 (55)
T 3u7u_G 6 VKCAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCPNEFT----GDRCQ 48 (55)
T ss_dssp EECCSTT-TTTSCTTCEEEEECCC--CCCEEEEECTTEE----STTSC
T ss_pred ccCCCCc-CCCCCCCCCcCCCCccCCCCCEeEeCCCCCc----CCCcC
Confidence 3578885 44664 3773 566899999999995 66673
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.71 E-value=6.6 Score=36.88 Aligned_cols=182 Identities=10% Similarity=0.031 Sum_probs=96.5
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCC-CceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSP-GTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~-g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
...+++.+.+. ..++-+.++.|.+.++........+...-.....+++.|.. | .++++- +....|...++.....
T Consensus 157 v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g--~~l~sg-s~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 157 LSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG--NTFVSG-GCDKKAMVWDMRSGQC 232 (354)
T ss_dssp EEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC--CEEEEE-ETTSCEEEEETTTCCE
T ss_pred EEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC--CEEEEE-eCCCeEEEEECCCCcE
Confidence 44566654443 44455667899999976544433333333446678887652 3 344444 3456788777764433
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEE
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASIL 309 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l 309 (461)
...+.........+++.+.+..|.-+.... .|...++.......+
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-----------------------------------~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGDAFASGSDDA-----------------------------------TCRLYDLRADREVAI 277 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTS-----------------------------------CEEEEETTTTEEEEE
T ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEeCCC-----------------------------------eEEEEECCCCcEEEE
Confidence 333333334567888987665554443322 344444443332222
Q ss_pred EeCC-e---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEEEeeCCCCCceeEEEecCCCeEEE
Q psy17325 310 VSGQ-L---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRSTIISTKIYWPNGLTLDIATRRVYF 384 (461)
Q Consensus 310 ~~~~-~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~~~l~~p~glaiD~~~~~ly~ 384 (461)
+... . ...+++.|.+..|+.... .+.|...++ .|.....+. ..-.....|++.+++..|..
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~~l~~g~~-------------d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGRLLFAGYN-------------DYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEET-------------TSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEE
T ss_pred EcCCCcccceeEEEEeCCCCEEEEEEC-------------CCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEE
Confidence 2211 1 567888876665554332 344554454 333333332 44456677888765554444
Q ss_pred E
Q psy17325 385 A 385 (461)
Q Consensus 385 ~ 385 (461)
+
T Consensus 344 g 344 (354)
T 2pbi_B 344 G 344 (354)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=92.68 E-value=6.1 Score=36.41 Aligned_cols=192 Identities=8% Similarity=0.017 Sum_probs=100.4
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
....+++.+. +...++-..++.|.+.++........+.........+++.|... .|.-.. ....|...++.+...
T Consensus 67 ~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~s--~D~~i~vwd~~~~~~ 141 (319)
T 3frx_A 67 IVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS--MIISGS--RDKTIKVWTIKGQCL 141 (319)
T ss_dssp CEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC--EEEEEE--TTSCEEEEETTSCEE
T ss_pred cEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC--EEEEEe--CCCeEEEEECCCCeE
Confidence 3455666653 44455556678999999765544333334445678899998755 554443 345777777776543
Q ss_pred EEEEecccccceeEEeeccCC-----eeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 230 STIISTKIYWPNGLTLDIATR-----RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~-----~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
..+. ........+++.+... .++++-... +.|...++...
T Consensus 142 ~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d----------------------------------~~i~~wd~~~~ 186 (319)
T 3frx_A 142 ATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGND----------------------------------KMVKAWNLNQF 186 (319)
T ss_dssp EEEC-CCSSCEEEEEECCC------CCEEEEEETT----------------------------------SCEEEEETTTT
T ss_pred EEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCC----------------------------------CEEEEEECCcc
Confidence 3332 1223344555544221 122222221 23444555433
Q ss_pred ceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 305 NASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 305 ~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
.....+.... ...+++.|.+..|.-+.. .+.|..-++........+ ..-.....|++.+.+..|
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-------------dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGK-------------DGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNRYWL 252 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEET-------------TCEEEEEETTTTEEEEEE-ECCSCEEEEEECSSSSEE
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCCcEEEEe-cCCCcEEEEEEcCCCCEE
Confidence 3222222222 778899986665543322 334444444333222222 223456788998776666
Q ss_pred EEEcCCCCeEEEEEe
Q psy17325 383 YFADSKLDFIDFCNY 397 (461)
Q Consensus 383 y~~d~~~~~I~~~~~ 397 (461)
..+.. +.|...++
T Consensus 253 a~~~~--~~i~v~~~ 265 (319)
T 3frx_A 253 AAATA--TGIKVFSL 265 (319)
T ss_dssp EEEET--TEEEEEEE
T ss_pred EEEcC--CCcEEEEe
Confidence 66543 45677777
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.67 E-value=6.5 Score=36.70 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=56.7
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE--E-EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR--I-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~--~-~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
...+++.+. +.+..+-..++.|.+.++.+... . .+..+.......+++.|... +|..+.. ...|...+.+..
T Consensus 19 v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~--D~~v~iw~~~~~ 93 (345)
T 3fm0_A 19 CWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASF--DATTCIWKKNQD 93 (345)
T ss_dssp EEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEET--TSCEEEEEECCC
T ss_pred EEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEEC--CCcEEEEEccCC
Confidence 345666654 44555556678888888776542 2 22233334578899999766 6665552 334544444433
Q ss_pred CcEEE--EecccccceeEEeeccCCeeEEec
Q psy17325 228 NRSTI--ISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 228 ~~~~i--~~~~~~~P~glavD~~~~~ly~~d 256 (461)
....+ +.........+++.+.+..|.-+.
T Consensus 94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s 124 (345)
T 3fm0_A 94 DFECVTTLEGHENEVKSVAWAPSGNLLATCS 124 (345)
T ss_dssp -EEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CeEEEEEccCCCCCceEEEEeCCCCEEEEEE
Confidence 22221 222234567888887666555443
|
| >2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.069 Score=50.66 Aligned_cols=70 Identities=34% Similarity=0.845 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCceecCcceecCCccc--CceeeccCC
Q psy17325 15 KTDCPNGADEGPGCDLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCS--QMCTNTKGS 90 (461)
Q Consensus 15 ~~dC~dg~de~~~C~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~--~~C~~~~g~ 90 (461)
.-.|+.|+. +..|+.+.|.. .|.+ .|.. .+.|.|++||. +..|+. .+|. ..|. ..|.+ .
T Consensus 166 ~C~C~~G~~-G~~C~~~~C~~---~C~~~G~C~~---~~~C~C~~G~~----G~~C~~-~~C~--~~C~~~G~C~~---~ 228 (324)
T 2ygq_A 166 ICECPDGFH-GPHCEKALCTP---RCMNGGLCVT---PGFCICPPGFY----GVNCDK-ANCS--TTCFNGGTCFY---P 228 (324)
T ss_dssp CEECCTTEE-SSSSCEESSSS---CCCTTCEECS---SCCEECCTTCB----TTTTCB-CCCS--SCCCSSCCBSC---S
T ss_pred eEECCCCCc-CCCCCCCCCCC---CCCCCCEEcC---CCEEeCCCCcc----CCCccc-CcCC--CCCCCCCeeCC---C
Confidence 346888884 46787767753 4543 4654 47899999996 556753 3343 2343 24544 3
Q ss_pred ccccCCCCeee
Q psy17325 91 YICSCNEGYVL 101 (461)
Q Consensus 91 ~~C~C~~g~~l 101 (461)
+.|.|++||..
T Consensus 229 ~~C~C~~G~~G 239 (324)
T 2ygq_A 229 GKCICPPGLEG 239 (324)
T ss_dssp SCBCCCTTCCT
T ss_pred CeeeCCCCccC
Confidence 68999999873
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=92.64 E-value=5.8 Score=36.08 Aligned_cols=103 Identities=10% Similarity=-0.012 Sum_probs=57.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc----EEEEecCCCCCceeEEEcCC--CCceEEEEeecCCCCcEEEEe
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN----RIVLAKDNITQPRGMMLDPS--PGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~----~~~l~~~~~~~p~~ia~d~~--~g~~~ly~td~~~~~~I~~~~ 223 (461)
.+..+++.+.+ ++.++-..++.|.+.+++... ....+...-.....|++.|. .. +|+.+. ....|...+
T Consensus 13 ~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~--~dg~v~vwd 87 (351)
T 3f3f_A 13 LVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASAS--YDKTVKLWE 87 (351)
T ss_dssp CEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEE--TTSCEEEEE
T ss_pred ceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEc--CCCeEEEEe
Confidence 35567777644 444555567889888876432 12222333355788999884 33 454444 345677666
Q ss_pred cCCCC--------c-EEEEecccccceeEEeecc--CCeeEEecC
Q psy17325 224 MDGSN--------R-STIISTKIYWPNGLTLDIA--TRRVYFADS 257 (461)
Q Consensus 224 ~dG~~--------~-~~i~~~~~~~P~glavD~~--~~~ly~~d~ 257 (461)
+.... . ...+.........+++.+. +..|+.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence 65432 1 1122223345678888876 555554443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=92.57 E-value=8 Score=37.50 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=42.4
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
+..+++. .+.++++-..++.|.+.+++.......+.........+++.+.....+|+... ....|...++...
T Consensus 165 V~~l~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s--~d~~i~vwd~~~~ 237 (464)
T 3v7d_B 165 VWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS--RDNTLHVWKLPKE 237 (464)
T ss_dssp EEEEEEC--STTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE--TTSCEEEEECCCC
T ss_pred EEEEEEc--CCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc--CCCcEEEeeCCCC
Confidence 4445554 33366677778899999987655444444444557778887532212444443 3456666666543
|
| >2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.088 Score=51.89 Aligned_cols=52 Identities=25% Similarity=0.708 Sum_probs=31.4
Q ss_pred CCCCceEeCCCCCeecCCCCceecC-------cceecCCccc--CceeeccCCccccCCCCeeeeCCCCcee
Q psy17325 47 TPLGALCTCPPGEILSNDSVTCQDM-------NECEQPGYCS--QMCTNTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 47 ~~~~~~C~C~~G~~l~~~~~~C~d~-------~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
.++++.|.|++||. +..|+.. ..|...-.|. ..|.+.. .|.|++||. +..|.
T Consensus 259 ~~~~~~C~C~~G~~----G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~----G~~Ce 319 (423)
T 2gy5_A 259 LPDPYGCSCATGWK----GLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQ----GLQCE 319 (423)
T ss_dssp ETTTTEEECCBTCB----SGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCB----STTSC
T ss_pred CCCCCeEEeCCCcc----cccccCccCCCCcCCcccccccCCCCCEecCCC---ceECCCCCc----CCCCc
Confidence 46789999999996 5566531 1221111232 2565543 399999995 55674
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=92.45 E-value=7.5 Score=36.86 Aligned_cols=202 Identities=9% Similarity=-0.028 Sum_probs=103.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC-
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN- 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~- 228 (461)
.+..+++.+. +++.++-+.++.|.+.+.........+.........+++.|... +|.... ....|...++....
T Consensus 68 ~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~--~las~~--~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 68 KVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ--SVACGG--LDSACSIFNLSSQAD 142 (380)
T ss_dssp CEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS--EEEECC--SSSCCEEEECCCCSS
T ss_pred EEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC--EEEEee--CCCcEEEEECCCCcc
Confidence 3455666654 44555666678999999766555444444445577889998755 555443 33455544443211
Q ss_pred -----c-EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 229 -----R-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 229 -----~-~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
. ...+.........+++.+..+...++-... +.|...++.
T Consensus 143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D----------------------------------~~i~~wd~~ 188 (380)
T 3iz6_a 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD----------------------------------QTCVLWDVT 188 (380)
T ss_dssp CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTT----------------------------------SCEEEECTT
T ss_pred ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCC----------------------------------CcEEEEEcC
Confidence 0 001111112233444444333322232222 134444444
Q ss_pred CCceEEEEeC-----Ce--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec--CCCeEEEeeCCCCCceeE
Q psy17325 303 GSNASILVSG-----QL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD--GSNRSTIISTKIYWPNGL 373 (461)
Q Consensus 303 g~~~~~l~~~-----~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d--G~~~~~l~~~~l~~p~gl 373 (461)
.......+.. .. ...+++.+.++.++.+-.. .+.|...++. +.....+. ..-.....|
T Consensus 189 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~------------D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v 255 (380)
T 3iz6_a 189 TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC------------DTTVRLWDLRITSRAVRTYH-GHEGDINSV 255 (380)
T ss_dssp TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET------------TSCEEEEETTTTCCCCEEEC-CCSSCCCEE
T ss_pred CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC------------CCeEEEEECCCCCcceEEEC-CcCCCeEEE
Confidence 3333222211 11 5667777766777766554 4455555543 22233332 444567889
Q ss_pred EEecCCCeEEEEcCCCCeEEEEEecCCCCeEE
Q psy17325 374 TLDIATRRVYFADSKLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 374 aiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~ 405 (461)
++.+.+ +.+.+-...+.|...++. +|....
T Consensus 256 ~~~p~~-~~l~s~s~D~~i~lwd~~-~~~~~~ 285 (380)
T 3iz6_a 256 KFFPDG-QRFGTGSDDGTCRLFDMR-TGHQLQ 285 (380)
T ss_dssp EECTTS-SEEEEECSSSCEEEEETT-TTEEEE
T ss_pred EEecCC-CeEEEEcCCCeEEEEECC-CCcEEE
Confidence 998554 445555667788888883 454433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=92.44 E-value=6.2 Score=35.89 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=44.4
Q ss_pred ceeeeeeeec-CCeEEEEeCCCCeEEEEeCCCCc---------EEEEecCCCCCceeEEEcCC--CCceEEEEeecCCCC
Q psy17325 150 LVEGLAYDWI-GGHIYWLDSRLNRIEVCDENGTN---------RIVLAKDNITQPRGMMLDPS--PGTRWLFWTDWGENP 217 (461)
Q Consensus 150 ~p~~iavd~~-~~~ly~~d~~~~~I~~~~~~G~~---------~~~l~~~~~~~p~~ia~d~~--~g~~~ly~td~~~~~ 217 (461)
.+..+++.+. .++++++-..++.|.+.+++... ....+...-.....+++.|. .. +|+.+. ...
T Consensus 59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~--~dg 134 (351)
T 3f3f_A 59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLG--NDG 134 (351)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEE--TTC
T ss_pred cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEec--CCC
Confidence 4556666654 36666666778899999876542 22223333355788999987 44 555544 345
Q ss_pred cEEEEecC
Q psy17325 218 RIERIGMD 225 (461)
Q Consensus 218 ~I~~~~~d 225 (461)
.|...++.
T Consensus 135 ~v~iwd~~ 142 (351)
T 3f3f_A 135 ILRLYDAL 142 (351)
T ss_dssp EEEEEECS
T ss_pred cEEEecCC
Confidence 67776664
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=92.43 E-value=1.3 Score=45.51 Aligned_cols=107 Identities=11% Similarity=0.169 Sum_probs=67.4
Q ss_pred cCccceeeeeeeecCCeEEEEeCC---------------------CCeEEEEeCCCCc--------EEEEec--------
Q psy17325 146 SGLDLVEGLAYDWIGGHIYWLDSR---------------------LNRIEVCDENGTN--------RIVLAK-------- 188 (461)
Q Consensus 146 ~g~~~p~~iavd~~~~~ly~~d~~---------------------~~~I~~~~~~G~~--------~~~l~~-------- 188 (461)
+.+.+||++++++.++.||++-++ .++|.+..+++.. ...++.
T Consensus 381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~ 460 (592)
T 3zwu_A 381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG 460 (592)
T ss_dssp CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence 467899999999999999998653 3678888754321 111211
Q ss_pred ------------CCCCCceeEEEcCCCCceEEEEeecCC-----------CCcEEEEecCCCCcEEEEec-ccccceeEE
Q psy17325 189 ------------DNITQPRGMMLDPSPGTRWLFWTDWGE-----------NPRIERIGMDGSNRSTIIST-KIYWPNGLT 244 (461)
Q Consensus 189 ------------~~~~~p~~ia~d~~~g~~~ly~td~~~-----------~~~I~~~~~dG~~~~~i~~~-~~~~P~gla 244 (461)
..+..|..|++|+..+ ||+..=+. +..+............++.. .-.-..|++
T Consensus 461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~---LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~ 537 (592)
T 3zwu_A 461 TPKGGSSNITPQNMFNSPDGLGFDKAGR---LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS 537 (592)
T ss_dssp SGGGCCTTCCTTTCCCCEEEEEECTTCC---EEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEE
T ss_pred cccccccccCCCCCccCCcceEECCCCC---EEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCee
Confidence 1366899999999744 66553132 23455555442233333322 223467999
Q ss_pred eeccCCeeEEe
Q psy17325 245 LDIATRRVYFA 255 (461)
Q Consensus 245 vD~~~~~ly~~ 255 (461)
+.+..+.||+.
T Consensus 538 fspDg~tlfvn 548 (592)
T 3zwu_A 538 FSPDQKTLFVG 548 (592)
T ss_dssp ECTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 99988888875
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=92.35 E-value=7.1 Score=36.33 Aligned_cols=193 Identities=7% Similarity=0.005 Sum_probs=99.9
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+++.+ .+++..+-..++.|.+.+.........+...-.....+++.|... +|.... ....|...++.....
T Consensus 57 ~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~--~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 57 KIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN--YVACGG--LDNICSIYNLKTREG 131 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS--EEEEEE--TTCEEEEEETTTCSB
T ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC--EEEEEe--CCCeEEEEECccCCC
Confidence 345566664 345556666788999998665444333333334577889998765 666554 335666666653221
Q ss_pred --EE--EEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 230 --ST--IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 230 --~~--i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
.. .+.........+++.+ .+.|+.+... +.|...++....
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~d-----------------------------------~~i~~wd~~~~~ 175 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGD-----------------------------------TTCALWDIETGQ 175 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEE-TTEEEEEETT-----------------------------------SCEEEEETTTTE
T ss_pred cceeEEEecCCCccEEEEEECC-CCcEEEEECC-----------------------------------CcEEEEECCCCc
Confidence 11 1111222334455543 3333333222 234444544333
Q ss_pred eEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEE
Q psy17325 306 ASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 306 ~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly 383 (461)
....+.... ...+++.|.+. ++++-.. .+.|...++........+...-....+|++.+.+..|.
T Consensus 176 ~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~------------d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 242 (340)
T 1got_B 176 QTTTFTGHTGDVMSLSLAPDTR-LFVSGAC------------DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEET------------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEcCCCCceEEEEECCCCC-EEEEEeC------------CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE
Confidence 222222222 77888888554 4444333 34444444433222222223445678899986555444
Q ss_pred EEcCCCCeEEEEEe
Q psy17325 384 FADSKLDFIDFCNY 397 (461)
Q Consensus 384 ~~d~~~~~I~~~~~ 397 (461)
+-...+.|...++
T Consensus 243 -s~s~d~~v~iwd~ 255 (340)
T 1got_B 243 -TGSDDATCRLFDL 255 (340)
T ss_dssp -EEETTSCEEEEET
T ss_pred -EEcCCCcEEEEEC
Confidence 4455678888888
|
| >2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.043 Score=46.75 Aligned_cols=79 Identities=24% Similarity=0.626 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCC-CceeCCCCceEeCCCCCeecCCCCceecCcceecCCcccC-ceeeccCCcccc
Q psy17325 17 DCPNGADEGPGCDLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYCSQ-MCTNTKGSYICS 94 (461)
Q Consensus 17 dC~dg~de~~~C~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~-~C~~~~g~~~C~ 94 (461)
.|..|+- +..|+.++|.. ...|.+ .|.+ .+.|.|++||. +..|+ +|.....|.+ .|. +++.|.
T Consensus 53 ~C~~G~~-G~~C~~~~C~~-~C~~~~g~C~~---~~~C~C~~G~~----G~~C~---~C~~~~~C~~g~C~---~~~~C~ 117 (169)
T 2vj2_A 53 TCMEGWM-GPECNRAICRQ-GCSPKHGSCKL---PGDCRCQYGWQ----GLYCD---KCIPHPGCVHGICN---EPWQCL 117 (169)
T ss_dssp EECTTEE-STTSCEECCCT-TCCTTTEECSS---TTCCEECTTEE----SSSSC---EECCCTTCSSEECS---STTCCE
T ss_pred ECCCCCc-CCCCCCCCCCC-CCCCCCcccCC---CCeeECCCCCC----CCCcc---cCCCCCCCCCCCcC---CCCEEe
Confidence 4666663 35676555642 111122 3543 57899999996 55664 4543333543 555 578999
Q ss_pred CCCCeeeeCCCCcee-ecccc
Q psy17325 95 CNEGYVLEYDNHTCK-AINHS 114 (461)
Q Consensus 95 C~~g~~l~~~~~~C~-~~~~~ 114 (461)
|++||. +..|. +++++
T Consensus 118 C~~G~~----G~~C~~~~~~C 134 (169)
T 2vj2_A 118 CETNWG----GQLCDKDLNYC 134 (169)
T ss_dssp ECTTEE----TTTTCEESCHH
T ss_pred CCCCCC----CCcccCCCCCC
Confidence 999996 45675 55554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.21 E-value=8.2 Score=36.77 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=80.9
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
...+++.|... +|+... ....|...++........+.........+++.+.+..|+-+....
T Consensus 126 v~~v~~s~dg~--~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-------------- 187 (393)
T 1erj_A 126 IRSVCFSPDGK--FLATGA--EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR-------------- 187 (393)
T ss_dssp EEEEEECTTSS--EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--------------
T ss_pred EEEEEECCCCC--EEEEEc--CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCC--------------
Confidence 56889988755 665544 346777777765433333333344567888887776665544332
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
.|...++........+.... ...+++.|..+.++.+-.. .+.|...
T Consensus 188 ---------------------~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~------------d~~v~iw 234 (393)
T 1erj_A 188 ---------------------TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL------------DRAVRVW 234 (393)
T ss_dssp ---------------------EEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET------------TSCEEEE
T ss_pred ---------------------cEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC------------CCcEEEE
Confidence 34444544333322222222 6778888856655555443 2333333
Q ss_pred eecCCC-eEEEe------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 353 GMDGSN-RSTII------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 353 ~~dG~~-~~~l~------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
++.... ...+. ...-.....|++.+.+..|+.+ ...+.|...++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~ 285 (393)
T 1erj_A 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNL 285 (393)
T ss_dssp ETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC
T ss_pred ECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEEC
Confidence 332211 11111 1223356778888655555444 44567777776
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=91.88 E-value=9.7 Score=36.90 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=113.6
Q ss_pred ceeeeeeee-cCCeEEEEeCCCCeEEEEeCCCCcEE-----------------------EEecCCCCCceeEEEcCCCCc
Q psy17325 150 LVEGLAYDW-IGGHIYWLDSRLNRIEVCDENGTNRI-----------------------VLAKDNITQPRGMMLDPSPGT 205 (461)
Q Consensus 150 ~p~~iavd~-~~~~ly~~d~~~~~I~~~~~~G~~~~-----------------------~l~~~~~~~p~~ia~d~~~g~ 205 (461)
....+++.+ ..+.+.++-..++.|.+.++...... ............ +.+...
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~- 281 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGN- 281 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETT-
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCC-
Confidence 345566654 24566667777788888887654321 111111122223 333333
Q ss_pred eEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEE
Q psy17325 206 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWI 285 (461)
Q Consensus 206 ~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~ 285 (461)
.|+... ....|...++........+.........+++++.+..|+.+....
T Consensus 282 -~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-------------------------- 332 (464)
T 3v7d_B 282 -IVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-------------------------- 332 (464)
T ss_dssp -EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS--------------------------
T ss_pred -EEEEEe--CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------------------------
Confidence 555544 345677777654332222322334567888888666666554432
Q ss_pred ecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe
Q psy17325 286 DEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII 363 (461)
Q Consensus 286 d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~ 363 (461)
.|...++........+.... ...++++ +..|..+ .. .+.|...++.........
T Consensus 333 ---------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~-s~------------dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 333 ---------TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA-AA------------DGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp ---------CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE-ET------------TSEEEEEETTTCCEEEEE
T ss_pred ---------cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE-eC------------CCcEEEEECCCCceeeee
Confidence 35555554332222222221 5666665 3433332 22 344555555433333222
Q ss_pred eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCC
Q psy17325 364 STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGA 443 (461)
Q Consensus 364 ~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~ 443 (461)
..-.....+++.+.+..|.... .+.|...++. +|........... .+..++++.++.++.+-...
T Consensus 389 -~~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~-~g~~~~~~~~~~~-----------~~v~~v~~~~~~l~~~~~~~ 453 (464)
T 3v7d_B 389 -HHTNLSAITTFYVSDNILVSGS--ENQFNIYNLR-SGKLVHANILKDA-----------DQIWSVNFKGKTLVAAVEKD 453 (464)
T ss_dssp -ECTTCCCEEEEEECSSEEEEEE--TTEEEEEETT-TCCEEESCTTTTC-----------SEEEEEEEETTEEEEEEEET
T ss_pred -cCCCCccEEEEEeCCCEEEEec--CCeEEEEECC-CCcEEehhhccCC-----------CcEEEEEecCCEEEEEEEeC
Confidence 2333445567775555555444 5788888883 4543221111111 12567778888888876666
Q ss_pred cee
Q psy17325 444 EFL 446 (461)
Q Consensus 444 ~~i 446 (461)
+.+
T Consensus 454 g~~ 456 (464)
T 3v7d_B 454 GQS 456 (464)
T ss_dssp TEE
T ss_pred CeE
Confidence 544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=91.69 E-value=10 Score=36.90 Aligned_cols=106 Identities=9% Similarity=-0.043 Sum_probs=63.6
Q ss_pred ceeeeeeeecCCeEEE---EeCCCCeEEEEeCCCC------cE-----EEEecCCCCCceeEEEcCCCCceEEEEeecCC
Q psy17325 150 LVEGLAYDWIGGHIYW---LDSRLNRIEVCDENGT------NR-----IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE 215 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~---~d~~~~~I~~~~~~G~------~~-----~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~ 215 (461)
.+..+++.+.+..|++ +-...+.|.+.++... .. ..+..+.-..+.+|++.|..+ .++.+- +.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~--~~las~-s~ 170 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP--SMVAVC-LA 170 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT--TEEEEE-ET
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC--CEEEEE-EC
Confidence 4677888877777776 5566778888885432 10 112222224578999999855 566554 34
Q ss_pred CCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCC
Q psy17325 216 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 216 ~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~ 258 (461)
...|...++............-..+..+++.+.+..|+.+...
T Consensus 171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~d 213 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQN 213 (434)
T ss_dssp TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETT
T ss_pred CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCC
Confidence 4677777776442211111123467889998877777666543
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.075 Score=55.58 Aligned_cols=42 Identities=24% Similarity=0.582 Sum_probs=31.6
Q ss_pred ceEeCC----CCCeecCCCCcee-cCcceecC--Cccc--CceeeccCCccccCCCCee
Q psy17325 51 ALCTCP----PGEILSNDSVTCQ-DMNECEQP--GYCS--QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 51 ~~C~C~----~G~~l~~~~~~C~-d~~eC~~~--~~C~--~~C~~~~g~~~C~C~~g~~ 100 (461)
+.|.|+ +||. |..|+ ++++|... ..|+ ..|.+ +.|.|++||.
T Consensus 504 g~C~C~~~~~~Gy~----G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~ 554 (690)
T 3fcs_B 504 GQCVCHSSDFGKIT----GKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWT 554 (690)
T ss_dssp SSEEECCCSSCCCB----STTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEE
T ss_pred CeeEeecCCCCCee----CCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCc
Confidence 689999 8985 67886 67788632 3575 36765 6899999995
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=91.17 E-value=9.5 Score=35.42 Aligned_cols=89 Identities=8% Similarity=-0.036 Sum_probs=54.6
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeE
Q psy17325 164 YWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGL 243 (461)
Q Consensus 164 y~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~gl 243 (461)
+++-..++.|.+.++........+.........+++.|... ++.+- +....|...++........+.........+
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~sg-~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v 232 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR---LFVSG-ACDASAKLWDVREGMCRQTFTGHESDINAI 232 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEE-ETTSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC---EEEEE-eCCCcEEEEECCCCeeEEEEcCCcCCEEEE
Confidence 55566678899998765554444444445678899998755 44443 344677777776443333333334457789
Q ss_pred EeeccCCeeEEec
Q psy17325 244 TLDIATRRVYFAD 256 (461)
Q Consensus 244 avD~~~~~ly~~d 256 (461)
++.+.+..|..+.
T Consensus 233 ~~~p~~~~l~s~s 245 (340)
T 1got_B 233 CFFPNGNAFATGS 245 (340)
T ss_dssp EECTTSSEEEEEE
T ss_pred EEcCCCCEEEEEc
Confidence 9988665555443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.07 E-value=10 Score=38.36 Aligned_cols=171 Identities=15% Similarity=0.177 Sum_probs=97.9
Q ss_pred ceEEEEeecCCCCcEEEEecCCCCcEEEEe-cccccceeEEee--ccCCeeEEecCCCceeeecccceeeee--ccceee
Q psy17325 205 TRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLD--IATRRVYFADSKLDFIDCKSLEIKTNV--NYSTIF 279 (461)
Q Consensus 205 ~~~ly~td~~~~~~I~~~~~dG~~~~~i~~-~~~~~P~glavD--~~~~~ly~~d~~~~~i~~~~~~~~~~v--~~~~~~ 279 (461)
+++||+.| ..+++|-|++++--....|+. .+.....|+.+. +.++.+|......-.+-- ++ +.+ +...-|
T Consensus 142 GrylfiNd-kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pn-dg---~~~~~~~~~~y 216 (638)
T 3sbq_A 142 GKYLFIND-KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPN-DG---KVFDLQDENSY 216 (638)
T ss_dssp EEEEEEEE-TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSC-SS---SCCCTTSTTEE
T ss_pred eEEEEEec-CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCC-CC---cccccCChhhc
Confidence 56999999 888999999999755444543 356677788887 466666654433211000 00 000 000112
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCCce----EEEEeCCeeeeEEEeccCCeEEEeecCc-------------eeeEEEee
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGSNA----SILVSGQLYEALALDLENGMLYYSTLKC-------------TRWLFWTD 342 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~~~----~~l~~~~~p~~iavd~~~~~lY~t~~~~-------------~~~l~~~d 342 (461)
.+|. ..|+... ++++. +.+.....|+.++..|+|..++ ..|+...+
T Consensus 217 -~~f~---------------~iD~~tm~v~~Qv~v~-gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn 279 (638)
T 3sbq_A 217 -TMYN---------------AIDAETMEMAFQVIVD-GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFD 279 (638)
T ss_dssp -EEEE---------------EEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEE
T ss_pred -eEEE---------------EEcCCccEEEEEEEcC-CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEec
Confidence 1211 1222222 22222 2255667788888888876542 45777776
Q ss_pred cCC------CCc---eE---EEeecCCC-------eEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEec
Q psy17325 343 WGE------NPR---IE---RIGMDGSN-------RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYD 398 (461)
Q Consensus 343 ~~~------~~~---I~---~~~~dG~~-------~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~ 398 (461)
|.. .++ |. .--+||.. ..-.+ ..-..|.|+-++++++++|++.....++..++..
T Consensus 280 ~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~ 353 (638)
T 3sbq_A 280 IHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAID 353 (638)
T ss_dssp HHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred HHHHHHHHhcCCeEEECCCCeeEEccccccccCCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEee
Confidence 621 111 10 00123322 12222 3346899999999999999999999999999883
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=90.92 E-value=15 Score=37.37 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=61.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC-CCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD-GSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d-G~~ 228 (461)
.+..+++.+.+..+..+-..++.|.+.+.........+.+.-.....+++.|... + +.+- +....|...++. |..
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~--~-las~-s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--L-FAST-GGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS--E-EEEE-ETTSCEEEEETTTCCE
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC--E-EEEE-ECCCcEEEEECCCCcE
Confidence 3556777765555677777788898888654433333444445578999999744 4 4443 344567766654 332
Q ss_pred cEEEEe------cccccceeEEeeccCCeeEEec
Q psy17325 229 RSTIIS------TKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 229 ~~~i~~------~~~~~P~glavD~~~~~ly~~d 256 (461)
...+.. .......++++.+.+..|.-+.
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 222211 1223567888887666555443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=90.45 E-value=13 Score=36.19 Aligned_cols=64 Identities=5% Similarity=-0.209 Sum_probs=35.3
Q ss_pred CceeEEEcCCCCceEEEE---eecCCCCcEEEEecCCC------Cc---EEEE--ecccccceeEEeeccCCeeEEecCC
Q psy17325 193 QPRGMMLDPSPGTRWLFW---TDWGENPRIERIGMDGS------NR---STII--STKIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~---td~~~~~~I~~~~~dG~------~~---~~i~--~~~~~~P~glavD~~~~~ly~~d~~ 258 (461)
.+..+++.|... +|++ +- +....|...++... .. ..+. ...-....+|++.+..+.++.+-..
T Consensus 94 ~v~~l~~spdg~--~lav~~~sg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 94 PIHHLALSCDNL--TLSACMMSS-EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CEEEEEECTTSC--EEEEEEEET-TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred cccEEEEcCCCC--EEEEEEecc-CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 478899999866 7775 32 23356666655321 11 1111 1123457788888765555554433
Q ss_pred C
Q psy17325 259 L 259 (461)
Q Consensus 259 ~ 259 (461)
.
T Consensus 171 D 171 (434)
T 2oit_A 171 D 171 (434)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=90.44 E-value=13 Score=35.78 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=49.0
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE---EEEecc
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS---TIISTK 236 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~---~i~~~~ 236 (461)
.+++.++-..++.|.+.++........+.........+++++ + .|+... ....|...++...... ......
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~ 255 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--G--MMVTCS--KDRSIAVWDMASPTDITLRRVLVGH 255 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--T--EEEEEE--TTSCEEEEECSSSSCCEEEEEECCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--C--EEEEee--CCCcEEEEeCCCCCCceeeeEecCC
Confidence 455666667788999999765444333333334466666653 4 555544 3457777777644332 122222
Q ss_pred cccceeEEeeccCCeeEEecC
Q psy17325 237 IYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~ 257 (461)
......+++| ++.|+.+..
T Consensus 256 ~~~v~~~~~~--~~~l~s~~~ 274 (435)
T 1p22_A 256 RAAVNVVDFD--DKYIVSASG 274 (435)
T ss_dssp SSCEEEEEEE--TTEEEEEET
T ss_pred CCcEEEEEeC--CCEEEEEeC
Confidence 2334455553 555555543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=13 Score=35.69 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccccc
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYW 239 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~ 239 (461)
.+...++-..++.|.+.++........+...-.....+++| .. .|+... ....|...++........+......
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~--~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~ 215 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--ER--VIITGS--SDSTVRVWDVNTGEMLNTLIHHCEA 215 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--SS--EEEEEE--TTSCEEEEESSSCCEEEEECCCCSC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--CC--EEEEEc--CCCeEEEEECCCCcEEEEEcCCCCc
Confidence 34555566667889999976554444444333445666664 23 555444 4467777777644332222222333
Q ss_pred ceeEEeeccCCeeEEec
Q psy17325 240 PNGLTLDIATRRVYFAD 256 (461)
Q Consensus 240 P~glavD~~~~~ly~~d 256 (461)
...++++ .+.|+.+.
T Consensus 216 v~~l~~~--~~~l~s~s 230 (435)
T 1p22_A 216 VLHLRFN--NGMMVTCS 230 (435)
T ss_dssp EEEEECC--TTEEEEEE
T ss_pred EEEEEEc--CCEEEEee
Confidence 4455554 44444433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.04 E-value=14 Score=35.43 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=54.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeC----CCCcEEEEecC-----------CCCCceeEE--EcCCCCceEEEEee
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDE----NGTNRIVLAKD-----------NITQPRGMM--LDPSPGTRWLFWTD 212 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~----~G~~~~~l~~~-----------~~~~p~~ia--~d~~~g~~~ly~td 212 (461)
.+..+++.+ .++++++-..++.|.+.++ .|.....+... .-.....++ ..+... .|+...
T Consensus 113 ~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 189 (437)
T 3gre_A 113 TVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALT 189 (437)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEE
T ss_pred CEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEe
Confidence 456677775 4455556566788888876 44433222111 111122233 223322 444433
Q ss_pred cCCCCcEEEEecCCCCcEEEEec--ccccceeEEeeccCCeeEEecCC
Q psy17325 213 WGENPRIERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 213 ~~~~~~I~~~~~dG~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~~ 258 (461)
....|...++........+.. .......+++++.+..|+.+...
T Consensus 190 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 235 (437)
T 3gre_A 190 --NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR 235 (437)
T ss_dssp --TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT
T ss_pred --CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC
Confidence 446777777765443333332 34567889998876666655443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=89.94 E-value=2.7 Score=43.05 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=62.2
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEe----e------cCCCCceEEEeecCCCe-------EEEe--------------
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWT----D------WGENPRIERIGMDGSNR-------STII-------------- 363 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~----d------~~~~~~I~~~~~dG~~~-------~~l~-------------- 363 (461)
|++++++|.++.||++-+...... +. + -...+.|+|...++... ..++
T Consensus 386 pEgi~~~p~~g~vY~a~Tn~~~rg-~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~~ 464 (592)
T 3zwu_A 386 PEWIVVSPKDGQVYCTLTNNAKRG-EDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp EEEEEECTTTCCEEEEECCBTTTT-STTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred cceeEEcCCCCEEEEEecCCcccc-cCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccccc
Confidence 999999999999999866411000 00 0 00124577776543221 1111
Q ss_pred -------eCCCCCceeEEEecCCCeEEEE-cCC-----------CCeEEEEEecCCCCeEEEEEccccceeeccCCCCCc
Q psy17325 364 -------STKIYWPNGLTLDIATRRVYFA-DSK-----------LDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGV 424 (461)
Q Consensus 364 -------~~~l~~p~glaiD~~~~~ly~~-d~~-----------~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 424 (461)
...+..|.+|++| ..++||++ |.. ++.+...+.. +|.....+. ...+.. .
T Consensus 465 ~~~~~~~~~~f~~PDNL~fd-~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~-~g~~~rf~~-~P~gaE--------~ 533 (592)
T 3zwu_A 465 GSSNITPQNMFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFMV-GPIGCE--------V 533 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT-TCCEEEEEE-CCTTCE--------E
T ss_pred cccccCCCCCccCCcceEEC-CCCCEEEEecCCCcccccccccccceEEEEeCC-CCeEEEEEe-CCCCcc--------C
Confidence 0237789999999 45778886 432 3455655552 454433332 211111 1
Q ss_pred ceEEEeeeCCEEEEEe
Q psy17325 425 PALALDLENGMLYYST 440 (461)
Q Consensus 425 ~~~~l~~~~~~lYwtd 440 (461)
.+..++.++..||+.-
T Consensus 534 TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 534 TGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTSSEEEEEE
T ss_pred cCeeECCCCCEEEEEE
Confidence 2455556677888863
|
| >3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D | Back alignment and structure |
|---|
Probab=89.26 E-value=0.032 Score=37.19 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=24.0
Q ss_pred ceEeCCCCCeecCCCCceecCcceecCCcccCceee----ccCCccccCCCCeeeeCCCCce
Q psy17325 51 ALCTCPPGEILSNDSVTCQDMNECEQPGYCSQMCTN----TKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 51 ~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~----~~g~~~C~C~~g~~l~~~~~~C 108 (461)
+.|.|++||. .+.|.+.+ .|.+ ..++|.|.|++||. +..|
T Consensus 3 ~~C~C~~g~~----------~~pC~NGG----tC~~~~~~~~~~y~C~C~~Gf~----G~~C 46 (52)
T 3ca7_A 3 PTYKCPETFD----------AWYCLNDA----HCFAVKIADLPVYSCECAIGFM----GQRC 46 (52)
T ss_dssp CCBCCCHHHH----------HHTSCTTC----EEEEEEETTEEEEEEECCTTEE----STTS
T ss_pred eeeECCCCCc----------CCcCCCCC----EEecCccCCCCCEEEECCCCCc----CCCC
Confidence 4678888874 12333222 3443 34578899999885 4555
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=89.26 E-value=13 Score=33.92 Aligned_cols=74 Identities=8% Similarity=-0.025 Sum_probs=42.2
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.+..+++.+.+. +.++-..++.|...+...................+...+... .|+... ....+...++.+..
T Consensus 88 ~V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s--~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 88 FVSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR--QIVSGS--RDKTIKLWNTLGVC 161 (340)
T ss_dssp CEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS--CEEEEE--TTSCEEEECTTSCE
T ss_pred CEEEEEECCCCC-EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc--cceeec--CCCeEEEEEeCCCc
Confidence 456677765444 444445567888888777665555444444566666666655 555443 23455555555443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.88 E-value=13 Score=33.39 Aligned_cols=197 Identities=8% Similarity=-0.001 Sum_probs=95.8
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc---EEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN---RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~---~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..+..+++.+.+..|+ +-..++.|.+.++.... ....+.........++++. + .|+.+. ....|...+ .
T Consensus 60 ~~v~~~~~~~~~~~l~-~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~l~~~~--~d~~i~~~d-~ 131 (313)
T 3odt_A 60 GFLNSVCYDSEKELLL-FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD--G--VVISGS--WDKTAKVWK-E 131 (313)
T ss_dssp SCEEEEEEETTTTEEE-EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEET--T--EEEEEE--TTSEEEEEE-T
T ss_pred ccEEEEEECCCCCEEE-EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecC--C--EEEEEe--CCCCEEEEc-C
Confidence 4566788887555444 44456788877755432 1112222334466777753 3 555554 334666655 2
Q ss_pred CCCcEEEEecccccceeEEeec-cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 226 GSNRSTIISTKIYWPNGLTLDI-ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 226 G~~~~~i~~~~~~~P~glavD~-~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
+... ..+.........+++.+ ..+.|+.+.. .+ .|...+ .+.
T Consensus 132 ~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d~----------------------------------~i~i~d-~~~ 174 (313)
T 3odt_A 132 GSLV-YNLQAHNASVWDAKVVSFSENKFLTASA-DK----------------------------------TIKLWQ-NDK 174 (313)
T ss_dssp TEEE-EEEECCSSCEEEEEEEETTTTEEEEEET-TS----------------------------------CEEEEE-TTE
T ss_pred CcEE-EecccCCCceeEEEEccCCCCEEEEEEC-CC----------------------------------CEEEEe-cCc
Confidence 2211 22222334455677665 3444444333 22 233333 111
Q ss_pred ceEEEEe-CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 305 NASILVS-GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 305 ~~~~l~~-~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
....+.. ... ...+++.|.+. |+ +-.. .+.|...++........+...-.....|++.+.+ +|
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 175 VIKTFSGIHNDVVRHLAVVDDGH-FI-SCSN------------DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EEEEECSSCSSCEEEEEEEETTE-EE-EEET------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred eEEEEeccCcccEEEEEEcCCCe-EE-EccC------------CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 1111111 111 67788876544 33 3222 3455555554332222222444567788887554 55
Q ss_pred EEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 383 YFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 383 y~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
+.+ ...+.|...++. ++.....+
T Consensus 240 ~~~-~~dg~v~iwd~~-~~~~~~~~ 262 (313)
T 3odt_A 240 VSC-GEDRTVRIWSKE-NGSLKQVI 262 (313)
T ss_dssp EEE-ETTSEEEEECTT-TCCEEEEE
T ss_pred EEE-ecCCEEEEEECC-CCceeEEE
Confidence 544 456788888873 45544443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.69 E-value=17 Score=34.71 Aligned_cols=70 Identities=7% Similarity=-0.062 Sum_probs=42.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCC---C--cE-EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEe
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENG---T--NR-IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIG 223 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G---~--~~-~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~ 223 (461)
.+..+++.+..+.++++-..++.|.+.++.. . .. ..... .-.....|++.|... .|+.+. ....|...+
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~--~l~s~s--~dg~i~vwd 139 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFD--AFAVSS--KDGQIIVLK 139 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSS--EEEEEE--TTSEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCC--EEEEEe--CCCEEEEEE
Confidence 4567777763556667777788999988654 1 11 11111 224578899998755 666554 334555555
Q ss_pred c
Q psy17325 224 M 224 (461)
Q Consensus 224 ~ 224 (461)
+
T Consensus 140 ~ 140 (437)
T 3gre_A 140 V 140 (437)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=23 Score=35.98 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=57.7
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEe---------------------ec----CCCCceEEEeec-CCCeEEEeeCCCCC
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWT---------------------DW----GENPRIERIGMD-GSNRSTIISTKIYW 369 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~---------------------d~----~~~~~I~~~~~d-G~~~~~l~~~~l~~ 369 (461)
.++++||.++.||+.... ....++. .. ...+.|...++. |+.+-.+- .. ..
T Consensus 389 ~~~a~dp~~g~~yv~~~~-~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~-~~-~~ 465 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNH-ICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKW-EK-FA 465 (571)
T ss_dssp CBCEEETTTTEEEEEEEC-EEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEE-ES-SC
T ss_pred CCceECCCCCEEEEEchh-ccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEec-CC-CC
Confidence 468999999999997542 1111110 00 012456655543 33322222 11 12
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeC
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTE 441 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~ 441 (461)
+.+.++...++.||+.. ..+.|..++.. +|..+-.+....... ..|+.+ ..++++|+...
T Consensus 466 ~~~~~~~t~gg~v~~g~-~dg~l~a~D~~-tG~~lw~~~~~~~~~---------~~p~~~-~~~G~~yv~~~ 525 (571)
T 2ad6_A 466 AWGGTLYTKGGLVWYAT-LDGYLKALDNK-DGKELWNFKMPSGGI---------GSPMTY-SFKGKQYIGSM 525 (571)
T ss_dssp CCSBCEEETTTEEEEEC-TTSEEEEEETT-TCCEEEEEECSSCCC---------SCCEEE-EETTEEEEEEE
T ss_pred ccceeEEECCCEEEEEc-CCCeEEEEECC-CCCEEEEEeCCCCcE---------eeeEEE-EECCEEEEEEE
Confidence 23333333678999874 46789999983 677654333221111 123433 35788888654
|
| >1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=88.33 E-value=0.24 Score=45.99 Aligned_cols=40 Identities=40% Similarity=0.990 Sum_probs=32.2
Q ss_pred cCcceecC----CcccCceeeccCCccccCCCCeeeeCCCCcee
Q psy17325 70 DMNECEQP----GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 70 d~~eC~~~----~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
+.++|..+ ..|++.|.+..+++.|.|.+||.|..+...|.
T Consensus 119 ~~~~C~~~~~~~~~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 119 DVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp ECCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred cCCccCCCCCCcccCCCccccccCceEeecCCCceeccCCCCcc
Confidence 34566532 35999999999999999999999999888885
|
| >1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A | Back alignment and structure |
|---|
Probab=87.92 E-value=0.2 Score=32.32 Aligned_cols=35 Identities=29% Similarity=0.869 Sum_probs=22.6
Q ss_pred Ccceec--CCcccC-ceeecc--CCccccCCCCeeeeCCCCcee
Q psy17325 71 MNECEQ--PGYCSQ-MCTNTK--GSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 71 ~~eC~~--~~~C~~-~C~~~~--g~~~C~C~~g~~l~~~~~~C~ 109 (461)
+++|.. ..+|.+ .|.... ++|.|.|++||. +..|.
T Consensus 3 i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~Gyt----G~~Ce 42 (46)
T 1k36_A 3 ITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYT----GVRCE 42 (46)
T ss_dssp EECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCS----STTSC
T ss_pred cccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCc----cCCCC
Confidence 455542 145543 677654 689999999994 66663
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.86 E-value=19 Score=34.30 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=59.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCC-CCcEEEE-------ecCCCCCceeEEEcCCC-CceEEEEeecCCCCcEE
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDEN-GTNRIVL-------AKDNITQPRGMMLDPSP-GTRWLFWTDWGENPRIE 220 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~-G~~~~~l-------~~~~~~~p~~ia~d~~~-g~~~ly~td~~~~~~I~ 220 (461)
.+..+++.+.+ +++.+- .++.|.+.+++ +.....+ +...-.....++++|.. . .|+... ....|.
T Consensus 179 ~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~~--~dg~i~ 252 (447)
T 3dw8_B 179 HINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN--TFVYSS--SKGTIR 252 (447)
T ss_dssp CCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT--EEEEEE--TTSCEE
T ss_pred ceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc--EEEEEe--CCCeEE
Confidence 35567777644 444454 68999999988 3322222 12223457899999986 4 455444 345777
Q ss_pred EEecCCCCc----EEEEecccc------------cceeEEeeccCCeeEEecC
Q psy17325 221 RIGMDGSNR----STIISTKIY------------WPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 221 ~~~~dG~~~----~~i~~~~~~------------~P~glavD~~~~~ly~~d~ 257 (461)
..++..... ...+..... ....+++.+.+..|..+..
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 777764432 223322221 5678899886666665544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=87.49 E-value=21 Score=34.32 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=53.1
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
..++++ +++.++-..++.|.+.++........+...-.....+++++ + .|+... ....|...++.......
T Consensus 163 ~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~--~l~s~s--~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 163 WSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--K--RVVSGS--RDATLRVWDIETGQCLH 233 (445)
T ss_dssp EEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET--T--EEEEEE--TTSEEEEEESSSCCEEE
T ss_pred EEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC--C--EEEEEe--CCCEEEEEECCCCcEEE
Confidence 444553 45666667788999999876554444443334566777764 3 555544 34677777776544333
Q ss_pred EEecccccceeEEeeccCCeeEEec
Q psy17325 232 IISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 232 i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
.+.........+++| ++.|+.+.
T Consensus 234 ~~~~~~~~v~~~~~~--~~~l~~~~ 256 (445)
T 2ovr_B 234 VLMGHVAAVRCVQYD--GRRVVSGA 256 (445)
T ss_dssp EEECCSSCEEEEEEC--SSCEEEEE
T ss_pred EEcCCcccEEEEEEC--CCEEEEEc
Confidence 333333345556663 44554444
|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
Probab=87.15 E-value=0.26 Score=51.49 Aligned_cols=68 Identities=25% Similarity=0.585 Sum_probs=43.6
Q ss_pred CCCC--CCcccCCC-CCCCC--CceeCCCCceEeCCCCCeecCCCCcee---cCcceecC--CcccC--ceeeccCCccc
Q psy17325 26 PGCD--LAECKHKF-GLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ---DMNECEQP--GYCSQ--MCTNTKGSYIC 93 (461)
Q Consensus 26 ~~C~--~~~C~~~~-~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~---d~~eC~~~--~~C~~--~C~~~~g~~~C 93 (461)
..|+ .++|.... ..|.+ .|.+ +.|.|++||. |..|+ ++++|... ..|++ .|.+ ..|
T Consensus 519 ~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~----G~~CeC~~~~~~C~~~~g~~C~~~G~C~~----g~C 586 (690)
T 3fcs_B 519 KYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWT----GYYCNCTTRTDTCMSSNGLLCSGRGKCEC----GSC 586 (690)
T ss_dssp TTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEE----SSSSCEECCCTTTBCTTSSBTSSSCEEET----TEE
T ss_pred CCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCc----CCCCccCCCCCcccCCCCCCCCCCCEEeC----CEE
Confidence 5664 56676421 34643 4654 7899999996 56676 56778632 35753 6754 289
Q ss_pred cC-CCCeeeeCCCCcee
Q psy17325 94 SC-NEGYVLEYDNHTCK 109 (461)
Q Consensus 94 ~C-~~g~~l~~~~~~C~ 109 (461)
.| ++||. +..|.
T Consensus 587 ~C~~~Gy~----G~~Ce 599 (690)
T 3fcs_B 587 VCIQPGSY----GDTCE 599 (690)
T ss_dssp ECCSTTCB----STTSC
T ss_pred ECCCCCcc----CCCcC
Confidence 99 99995 45553
|
| >3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* | Back alignment and structure |
|---|
Probab=86.97 E-value=0.19 Score=54.74 Aligned_cols=27 Identities=33% Similarity=0.907 Sum_probs=24.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCD 29 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~ 29 (461)
+|+||+..|+|||..||.|++|| ..|.
T Consensus 127 ~g~ci~~~~~c~g~~dC~d~sde-~~C~ 153 (913)
T 3t5o_A 127 SGRCIARKLECNGENDCGDNSDE-RDCG 153 (913)
T ss_dssp TSCEEEGGGSSSSSCCSSSSGGG-TTCS
T ss_pred CCceEccceecCCcccCCCcccc-ccCC
Confidence 58999999999999999999999 5674
|
| >4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=0.049 Score=49.64 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=36.6
Q ss_pred CCceeCCCCceEeCCCCCeecCCCCceec-CcceecCCcccCceeeccCCccccCCCCe
Q psy17325 42 NTCHPTPLGALCTCPPGEILSNDSVTCQD-MNECEQPGYCSQMCTNTKGSYICSCNEGY 99 (461)
Q Consensus 42 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~d-~~eC~~~~~C~~~C~~~~g~~~C~C~~g~ 99 (461)
..|++..++|+|.||+||. +..|+. ++||..+..|...+-+..+.+.|.|..++
T Consensus 178 g~C~dg~~~y~C~Cp~Gf~----G~~c~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~ 232 (267)
T 4fbr_A 178 GKTLSGTMTYNGEGPIGFR----GTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQ 232 (267)
T ss_dssp TSEEEEEEEETTSCCEEEE----EEEEETTEEEEEEECSCTTSCCEEEEEEECCCCTTC
T ss_pred CEeeCCCCCeEEeCCCCcc----ccccccccceeccCCCccCCcccCCCeEEEecCCCC
Confidence 4688888999999999996 467764 56665444455444344455666676665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=86.55 E-value=33 Score=35.62 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=13.9
Q ss_pred eEEeeccCCeeEEecCC
Q psy17325 242 GLTLDIATRRVYFADSK 258 (461)
Q Consensus 242 glavD~~~~~ly~~d~~ 258 (461)
.+++|+..+.||+....
T Consensus 247 ~~~~d~~~~~vy~~~~~ 263 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGN 263 (677)
T ss_dssp CEEEETTTTEEEEECCC
T ss_pred ceeEcCCCCEEEEECCC
Confidence 57899999999987654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=86.26 E-value=22 Score=33.36 Aligned_cols=197 Identities=10% Similarity=0.059 Sum_probs=98.9
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
++.+++.|... +|..+.-.....|...++........+. .-.....|++.+.++.|..+.... +
T Consensus 136 ~~~v~fSpDg~--~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~--~----------- 199 (365)
T 4h5i_A 136 TKLVYISREGT--VAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS--L----------- 199 (365)
T ss_dssp EEEEEECTTSS--CEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC--E-----------
T ss_pred EEEEEEcCCCC--EEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee--E-----------
Confidence 67899999866 7776552233567666766433322222 234577899988777666554322 1
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
.++|...+. .+......+ ... .+.+++.|.+..|..+... .+....|...
T Consensus 200 -------~~~~~~~~~-----~~~~~~~~~--------~~~~v~~v~fspdg~~l~~~s~d---------~~~~~~i~~~ 250 (365)
T 4h5i_A 200 -------EVISTVTGS-----CIARKTDFD--------KNWSLSKINFIADDTVLIAASLK---------KGKGIVLTKI 250 (365)
T ss_dssp -------EEEETTTCC-----EEEEECCCC--------TTEEEEEEEEEETTEEEEEEEES---------SSCCEEEEEE
T ss_pred -------EEEEeccCc-----ceeeeecCC--------CCCCEEEEEEcCCCCEEEEEecC---------CcceeEEeec
Confidence 122222211 111111111 111 6678888766655543322 0001123333
Q ss_pred eecCCCeEE----EeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEE
Q psy17325 353 GMDGSNRST----IISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALA 428 (461)
Q Consensus 353 ~~dG~~~~~----l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (461)
++....... .+.........|++.+++..|..+ ...+.|...++. +|.....+...... +..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg-s~D~~V~iwd~~-~~~~~~~~~~gH~~-----------~V~~ 317 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA-SNDNSIALVKLK-DLSMSKIFKQAHSF-----------AITE 317 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE-ETTSCEEEEETT-TTEEEEEETTSSSS-----------CEEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEE-cCCCEEEEEECC-CCcEEEEecCcccC-----------CEEE
Confidence 332222211 122344556788998665555544 445678888882 45443333322211 1345
Q ss_pred Eeee-CCEEEEEeCCCceeec
Q psy17325 429 LDLE-NGMLYYSTEGAEFLKT 448 (461)
Q Consensus 429 l~~~-~~~lYwtd~~~~~i~~ 448 (461)
|++. ++.+..|-...++||+
T Consensus 318 v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEE
Confidence 5554 3566677777888865
|
| >3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.85 E-value=0.37 Score=44.40 Aligned_cols=40 Identities=45% Similarity=1.042 Sum_probs=32.8
Q ss_pred cCcceec----CCcccCceeeccCCccccCCCCeeeeCCCCcee
Q psy17325 70 DMNECEQ----PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 70 d~~eC~~----~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
+.++|.. ...|.+.|.+..+++.|.|.+||.+..+.+.|.
T Consensus 120 ~~~~C~~~~~~~~~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~ 163 (278)
T 3dem_A 120 DVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163 (278)
T ss_dssp ECCTTTC-----CCCSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred ccccCCCCCCCcccCCcCcCCccCCcEEEeCCcceeccCCCCCc
Confidence 4556652 237999999999999999999999998888885
|
| >1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... | Back alignment and structure |
|---|
Probab=85.83 E-value=0.34 Score=49.36 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=28.8
Q ss_pred CCcccCCCCCCCCCcee-CCCCceEeCC-CCCeecCCCCceec
Q psy17325 30 LAECKHKFGLCSNTCHP-TPLGALCTCP-PGEILSNDSVTCQD 70 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~-~~~~~~C~C~-~G~~l~~~~~~C~d 70 (461)
.++|.+++++....|.+ ..++|.|.|+ +||. |..|+.
T Consensus 2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce~ 40 (553)
T 1q4g_A 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYS----GPNCTI 40 (553)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEE----TTTTCE
T ss_pred CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcC----CCCCCC
Confidence 36787766444567999 8899999999 9996 678863
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=84.18 E-value=42 Score=34.79 Aligned_cols=35 Identities=23% Similarity=0.103 Sum_probs=24.1
Q ss_pred eeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 371 NGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 371 ~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
.+.++...++.||+. ...+.+..++.. +|...-.+
T Consensus 480 ~~g~~~~~g~~v~~g-~~dg~l~a~D~~-tG~~lw~~ 514 (677)
T 1kb0_A 480 NGGTLTTAGNVVFQG-TADGRLVAYHAA-TGEKLWEA 514 (677)
T ss_dssp CCCEEEETTTEEEEE-CTTSEEEEEETT-TCCEEEEE
T ss_pred cCcceEeCCCEEEEE-CCCCcEEEEECC-CCceeeee
Confidence 444555478888887 567899999983 67765444
|
| >3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... | Back alignment and structure |
|---|
Probab=83.00 E-value=0.52 Score=48.18 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=27.0
Q ss_pred CcccCCCCCCCCCcee-CCCCceEeCC-CCCeecCCCCceec
Q psy17325 31 AECKHKFGLCSNTCHP-TPLGALCTCP-PGEILSNDSVTCQD 70 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~-~~~~~~C~C~-~G~~l~~~~~~C~d 70 (461)
++|.+++++....|.. ..++|.|.|+ +||. |..|+.
T Consensus 2 d~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce~ 39 (587)
T 3nt1_A 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFY----GENCTT 39 (587)
T ss_dssp CTTTTCCCCTTCEEEEEETTEEEEECTTSSEE----TTTTCE
T ss_pred CCCCCCCCCCCCEeeCCCCCCeEEecCCCCcc----CCCCCC
Confidence 5777666555567985 4588999999 9996 678863
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=82.88 E-value=34 Score=32.75 Aligned_cols=88 Identities=8% Similarity=-0.008 Sum_probs=48.2
Q ss_pred CeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccc
Q psy17325 161 GHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 240 (461)
Q Consensus 161 ~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P 240 (461)
++..++-..++.|.+.++........+.........+++++ + .|+.+. ....|...++........+.......
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~--~l~s~~--~dg~i~vwd~~~~~~~~~~~~h~~~v 202 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--N--IIISGS--TDRTLKVWNAETGECIHTLYGHTSTV 202 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--T--EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC--C--EEEEEe--CCCeEEEEECCcCcEEEEECCCCCcE
Confidence 45555666688999999765444433443334566777763 3 555544 34677777776443322222222334
Q ss_pred eeEEeeccCCeeEEec
Q psy17325 241 NGLTLDIATRRVYFAD 256 (461)
Q Consensus 241 ~glavD~~~~~ly~~d 256 (461)
..++++ .+.|+.+.
T Consensus 203 ~~~~~~--~~~l~s~s 216 (445)
T 2ovr_B 203 RCMHLH--EKRVVSGS 216 (445)
T ss_dssp EEEEEE--TTEEEEEE
T ss_pred EEEEec--CCEEEEEe
Confidence 556664 44554443
|
| >3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.74 E-value=0.74 Score=42.33 Aligned_cols=40 Identities=38% Similarity=0.725 Sum_probs=31.2
Q ss_pred CCcccCC---CCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 30 LAECKHK---FGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 30 ~~~C~~~---~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
.++|... +..|.+.|.+..+++.|.|.+||.+..+...|.
T Consensus 121 ~~~C~~~~~~~~~c~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~ 163 (278)
T 3dem_A 121 VDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163 (278)
T ss_dssp CCTTTC-----CCCSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred cccCCCCCCCcccCCcCcCCccCCcEEEeCCcceeccCCCCCc
Confidence 3456533 247888999999999999999999988777775
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=82.35 E-value=30 Score=31.81 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=46.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
.+..+++.+. +.+.++-..++.|.+.++........+...-.....+++.|... +|+-+. ....|...++.+.
T Consensus 78 ~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~~--~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 78 FVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR--QILSAG--AEREIKLWNILGE 150 (343)
T ss_dssp CEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT--EEEEEE--TTSCEEEEESSSC
T ss_pred ceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC--EEEEEc--CCCEEEEEeccCC
Confidence 3456777653 44555666788999999764443333333335678899999866 666554 3456777777643
|
| >1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=81.74 E-value=0.7 Score=42.74 Aligned_cols=39 Identities=33% Similarity=0.753 Sum_probs=29.5
Q ss_pred CcccCCC---CCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 31 AECKHKF---GLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~~~---~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
++|...+ ..|.+.|.+..+++.|.|.+||.+..+...|.
T Consensus 121 ~~C~~~~~~~~~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~ 162 (286)
T 1nt0_A 121 DECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCS 162 (286)
T ss_dssp CTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred CccCCCCCCcccCCCccccccCceEeecCCCceeccCCCCcc
Confidence 4565322 35888999999999999999999987777764
|
| >1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A | Back alignment and structure |
|---|
Probab=81.41 E-value=0.57 Score=39.10 Aligned_cols=34 Identities=32% Similarity=0.775 Sum_probs=25.7
Q ss_pred Cccc--CceeeccCCccccCCCCeeeeCCCCceeeccccc
Q psy17325 78 GYCS--QMCTNTKGSYICSCNEGYVLEYDNHTCKAINHSA 115 (461)
Q Consensus 78 ~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~~ 115 (461)
..|. ..|.+..++|.|.|++||. +..|..+++|.
T Consensus 125 ~~C~~~g~C~~~~~~~~c~C~~g~~----G~~Ce~~~~c~ 160 (162)
T 1g1s_A 125 MSCSKQGECLETIGNYTCSCYPGFY----GPECEYVRDDD 160 (162)
T ss_dssp TGGGGSEEEEECSSSEEEEECTTEE----STTSCEECC--
T ss_pred CCCCCCCEEecCCCCceEeCCCCCc----CcccccCcccC
Confidence 3564 3799999999999999996 56787776654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.08 E-value=64 Score=34.69 Aligned_cols=151 Identities=6% Similarity=-0.026 Sum_probs=82.4
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~ 271 (461)
.....||++|... +|.... ....|...+..+.... .....-.....|++.+ ++.|.-+....
T Consensus 18 ~~V~~lafspdg~--~lAsgs--~Dg~I~lw~~~~~~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~------------ 79 (902)
T 2oaj_A 18 SKPIAAAFDFTQN--LLAIAT--VTGEVHIYGQQQVEVV-IKLEDRSAIKEMRFVK-GIYLVVINAKD------------ 79 (902)
T ss_dssp SCEEEEEEETTTT--EEEEEE--TTSEEEEECSTTCEEE-EECSSCCCEEEEEEET-TTEEEEEETTC------------
T ss_pred CCcEEEEECCCCC--EEEEEe--CCCEEEEEeCCCcEEE-EEcCCCCCEEEEEEcC-CCEEEEEECcC------------
Confidence 4578899999866 665554 3356766666543221 1112223467888887 55455444332
Q ss_pred eeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-eEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceE
Q psy17325 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIE 350 (461)
Q Consensus 272 ~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~ 350 (461)
.|..-++.... ...+........++++|.+..|+..... +.|.
T Consensus 80 -----------------------~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~d-------------g~V~ 123 (902)
T 2oaj_A 80 -----------------------TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQN-------------GSMI 123 (902)
T ss_dssp -----------------------EEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETT-------------SCEE
T ss_pred -----------------------eEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCC-------------CcEE
Confidence 35555554332 2223222227788999888877765443 3444
Q ss_pred EEeecCCCeEEEe-----------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 351 RIGMDGSNRSTII-----------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 351 ~~~~dG~~~~~l~-----------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
..++++.....+. .........|++.+.++.+..+-...+.| ..++
T Consensus 124 lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 124 VYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 4444433221110 12234567888887655444454556777 7777
|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
Probab=80.94 E-value=0.4 Score=50.04 Aligned_cols=68 Identities=29% Similarity=0.758 Sum_probs=41.3
Q ss_pred CCCC--CCcccCC-CCCCCC----CceeCCCCceEeCCCCCeecCCCCcee---cCcceecC--CcccC--ceeeccCCc
Q psy17325 26 PGCD--LAECKHK-FGLCSN----TCHPTPLGALCTCPPGEILSNDSVTCQ---DMNECEQP--GYCSQ--MCTNTKGSY 91 (461)
Q Consensus 26 ~~C~--~~~C~~~-~~~C~~----~C~~~~~~~~C~C~~G~~l~~~~~~C~---d~~eC~~~--~~C~~--~C~~~~g~~ 91 (461)
..|+ ..+|... ...|.+ .|.. ..|.|++||. |..|+ +.++|... ..|+. .|.. .
T Consensus 510 ~~Ce~~~~~C~~~~~~~C~~~~~G~C~~----g~C~C~~G~~----G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~----g 577 (687)
T 3k6s_B 510 QYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFE----GSACQCERTTEGCLNPRRVECSGRGRCRC----N 577 (687)
T ss_dssp TTSCEESSCSCEETTEETSHHHHEEEET----TEEEECTTCC----STTSCSCCSSCTTBCTTCSBTSSSCCBCS----S
T ss_pred cccccccccccCCCCcCcCCCCCCeEEC----CEEEcCCCCc----CCCCccCCCCCCCCCCCCCCCCCCCcCCC----C
Confidence 4564 5566532 123543 3542 3899999995 66776 34667532 24643 5654 4
Q ss_pred cccCCCCeeeeCCCCcee
Q psy17325 92 ICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 92 ~C~C~~g~~l~~~~~~C~ 109 (461)
.|.|.+||. +..|.
T Consensus 578 ~C~C~~Gy~----G~~Ce 591 (687)
T 3k6s_B 578 VCECHSGYQ----LPLCQ 591 (687)
T ss_dssp CBCCSTTCC----TTTTC
T ss_pred EEECCCCCc----CCCCC
Confidence 799999994 55664
|
| >1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A | Back alignment and structure |
|---|
Probab=80.77 E-value=0.55 Score=32.40 Aligned_cols=27 Identities=22% Similarity=0.770 Sum_probs=19.8
Q ss_pred ceee-----ccCCccccCCCCeeeeCCCCcee-eccc
Q psy17325 83 MCTN-----TKGSYICSCNEGYVLEYDNHTCK-AINH 113 (461)
Q Consensus 83 ~C~~-----~~g~~~C~C~~g~~l~~~~~~C~-~~~~ 113 (461)
.|.+ ..++|.|.|++||. +..|. ++++
T Consensus 19 ~C~~~~~~~~~~~y~C~C~~Gf~----G~~Ce~~i~~ 51 (63)
T 1hae_A 19 ECFMVKDLSNPSRYLCKCQPGFT----GARCTENVPM 51 (63)
T ss_dssp EEEEEESSSSSCCEEEECCTTEE----STTSCEECCS
T ss_pred EEecCCccCCCCCEEEECCCCCc----CCccCcCcCc
Confidence 6775 56889999999995 66774 3443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.65 E-value=66 Score=34.58 Aligned_cols=101 Identities=6% Similarity=0.036 Sum_probs=62.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.+..+|+++.+..| .+-..++.|.+.+..+........ .-.....|++.| .. +|.-+. ....|...++.....
T Consensus 19 ~V~~lafspdg~~l-Asgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~--~L~S~s--~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 19 KPIAAAFDFTQNLL-AIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI--YLVVIN--AKDTVYVLSLYSQKV 91 (902)
T ss_dssp CEEEEEEETTTTEE-EEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT--EEEEEE--TTCEEEEEETTTCSE
T ss_pred CcEEEEECCCCCEE-EEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC--EEEEEE--CcCeEEEEECCCCcE
Confidence 45678888755544 455557889999887655433332 223578899998 33 455544 346777777764332
Q ss_pred EEEEecccccceeEEeeccCCeeEEecCC
Q psy17325 230 STIISTKIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 230 ~~i~~~~~~~P~glavD~~~~~ly~~d~~ 258 (461)
...+. .-.....+++++....|+.+...
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~d 119 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQN 119 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETT
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCC
Confidence 22222 22356788999888888776654
|
| >1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 | Back alignment and structure |
|---|
Probab=80.58 E-value=0.88 Score=28.88 Aligned_cols=23 Identities=30% Similarity=0.820 Sum_probs=18.0
Q ss_pred cee--eccCCccccCCCCeeeeCCCCcee
Q psy17325 83 MCT--NTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 83 ~C~--~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
.|. +..++|.|.|++||. +..|.
T Consensus 16 ~C~~~~~~~~~~C~C~~G~~----G~~Ce 40 (45)
T 1a3p_A 16 VXMHIESLDSYTCNCVIGYS----GDRCQ 40 (45)
T ss_dssp EEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred EEEeecCCCCEEEEcCCCCc----CCcCC
Confidence 676 677899999999995 55663
|
| >1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* | Back alignment and structure |
|---|
Probab=80.35 E-value=0.63 Score=30.89 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=17.7
Q ss_pred CCce--eCCCCceEeCCCCCeecCCCCcee
Q psy17325 42 NTCH--PTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 42 ~~C~--~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
..|. ...++|.|.|++||. +..|+
T Consensus 18 G~C~~~~~~~~~~C~C~~Gyt----G~~Ce 43 (53)
T 1nql_B 18 GVCMYIEALDKYACNCVVGYI----GERCQ 43 (53)
T ss_dssp CEEEEETTTTEEEEEECTTEE----STTSC
T ss_pred eEEeeecCCCCEEEecCCCCc----CCCCC
Confidence 3576 456778999999995 56675
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 461 | ||||
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 9e-27 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 1e-24 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 8e-16 | |
| d1i0ua2 | 41 | g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r | 2e-05 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 2e-12 | |
| d1nt0a3 | 45 | g.3.11.1 (A:120-164) Mannose-binding protein assoc | 1e-04 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 4e-12 | |
| d1nzia2 | 42 | g.3.11.1 (A:118-159) Complement C1S component {Hum | 6e-04 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 9e-12 | |
| d1apqa_ | 53 | g.3.11.1 (A:) Complement protease C1R {Human (Homo | 4e-04 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 1e-11 | |
| d1szba2 | 45 | g.3.11.1 (A:124-168) Mannose-binding protein assoc | 2e-05 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 2e-11 | |
| d1uzka2 | 43 | g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa | 6e-05 | |
| d1dx5i3 | 40 | g.3.11.1 (I:423-462) Thrombomodulin, different EGF | 6e-11 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 7e-11 | |
| d2p3ua1 | 51 | g.3.11.1 (A:87-137) Factor X, N-terminal module {H | 2e-07 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 9e-11 | |
| d1kigl_ | 51 | g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo | 4e-08 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 9e-11 | |
| d3bpse1 | 40 | g.3.11.1 (E:293-332) Low density lipoprotein (LDL) | 1e-05 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 2e-10 | |
| d1autl2 | 50 | g.3.11.1 (L:97-146) Activated protein c (autoproth | 4e-07 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 2e-10 | |
| d1uzka1 | 43 | g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa | 1e-05 | |
| d1emoa1 | 43 | g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa | 2e-10 | |
| d1emoa1 | 43 | g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa | 0.002 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 3e-10 | |
| d1lmja2 | 42 | g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien | 1e-04 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 1e-08 | |
| d1rfnb_ | 57 | g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens | 1e-05 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 4e-08 | |
| d2bz6l1 | 53 | g.3.11.1 (L:90-142) Coagulation factor VIIa {Human | 5e-05 | |
| d1lmja1 | 44 | g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens | 4e-07 | |
| d1ijqa2 | 50 | g.3.11.1 (A:643-692) Low density lipoprotein (LDL) | 7e-07 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 4e-05 | |
| d1rwia_ | 260 | b.68.9.1 (A:) Serine/threonine-protein kinase PknD | 0.004 | |
| d2vj3a1 | 42 | g.3.11.1 (A:411-452) Neurogenic locus notch homolo | 3e-04 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 5e-04 | |
| d1q7fa_ | 279 | b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D | 9e-04 | |
| d1gl4a2 | 40 | g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 | 0.001 | |
| d1d2la_ | 45 | g.12.1.1 (A:) Ligand-binding domain of low-density | 0.001 | |
| d2fcwb2 | 39 | g.12.1.1 (B:125-163) Ligand-binding domain of low- | 0.001 | |
| d2gtln2 | 41 | g.12.1.1 (N:61-101) Extracellular hemoglobin linke | 0.002 | |
| d2fcwb1 | 39 | g.12.1.1 (B:86-124) Ligand-binding domain of low-d | 0.002 | |
| d2gtlm2 | 42 | g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co | 0.002 | |
| d1cr8a_ | 42 | g.12.1.1 (A:) Ligand-binding domain of low-density | 0.002 | |
| d1k7ba_ | 42 | g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai | 0.002 | |
| d1f8za_ | 39 | g.12.1.1 (A:) Ligand-binding domain of low-density | 0.002 | |
| d1f5ya2 | 41 | g.12.1.1 (A:45-85) Ligand-binding domain of low-de | 0.002 | |
| d1ajja_ | 37 | g.12.1.1 (A:) Ligand-binding domain of low-density | 0.002 | |
| d1j8ea_ | 44 | g.12.1.1 (A:) Ligand-binding domain of low-density | 0.003 | |
| d1xfea2 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 0.003 | |
| d1v9u5_ | 39 | g.12.1.1 (5:) Very low-density lipoprotein recepto | 0.003 | |
| d1f5ya1 | 44 | g.12.1.1 (A:1-44) Ligand-binding domain of low-den | 0.003 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 9e-27
Identities = 46/280 (16%), Positives = 88/280 (31%), Gaps = 44/280 (15%)
Query: 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEV 175
A+L +NRH + L D ++ L V L + IYW D I
Sbjct: 2 AYLFFTNRHEVRKMTL-----DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICS 56
Query: 176 CDENGTN----RIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231
+ + + +I P G+ +D ++WTD + G R T
Sbjct: 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLG-TVSVADTKGVKRKT 113
Query: 232 IISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYST-------------- 277
+ P + +D +Y+ D K ++
Sbjct: 114 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 173
Query: 278 IFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG--QLYEALALDLENGMLYYSTLKCT 335
+ +LYW+D + I +++G N ++ +L +L + ++
Sbjct: 174 LSGRLYWVDSKLH----SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF------- 222
Query: 336 RWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTL 375
WTD N I + +++ + P + L
Sbjct: 223 ----WTDII-NEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 100 bits (249), Expect = 1e-24
Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 37/275 (13%)
Query: 117 FLIISNRHSILVADLEEKG-KDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEV 175
L+ + I LE K A+ + ++ GLA+D + +YW D I
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 176 CDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST 235
+G + + ++ P G+ LD R +FWTD + RIE MDG+ R + T
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLD-RIEVAKMDGTQRRVLFDT 119
Query: 236 KIYWPNGLTLDIATRRVYFADS-----KLDFIDCKSLEIKTNVN----------YSTIFR 280
+ P G+ D +Y+ D K++ + +
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Query: 281 KLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFW 340
+L W+D G + + N ++ G L A+ LY +
Sbjct: 180 QLCWVDAGTH----RAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLY-----------Y 223
Query: 341 TDWGENPRIERIGM-DGSNRSTIISTKIYWPNGLT 374
TDW + + + + T K G+T
Sbjct: 224 TDW-KTNSVIAMDLAISKEMDTFHPHKQTRLYGIT 257
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.0 bits (169), Expect = 8e-16
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 72 NECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111
+EC+ P CSQ+C N +G Y C C EG+ L+ CKA+
Sbjct: 2 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (93), Expect = 2e-05
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM 71
EC+ CS C G C C G L + C+ +
Sbjct: 3 ECQDP-DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.1 bits (143), Expect = 2e-12
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 71 MNECEQP----GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111
++EC C C N G Y CSC GY+L + HTC A+
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.2 bits (86), Expect = 1e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 32 ECK---HKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM 71
EC+ C + CH G C+C G IL + TC +
Sbjct: 3 ECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (141), Expect = 4e-12
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 72 NECEQP--GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
NEC CS C N G Y CSC Y L D C
Sbjct: 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 41
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (81), Expect = 6e-04
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 32 ECKHKF-GLCSNTCHPTPLGALCTCPPGEILSNDSVTC 68
EC CS+ C+ G C+CPP L +D C
Sbjct: 2 ECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (139), Expect = 9e-12
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 70 DMNECEQ---------PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
D++EC C +C N G Y CSC GY L+ D H+C+A
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (83), Expect = 4e-04
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69
+ C + CH G C+C PG L D +CQ
Sbjct: 15 EEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (137), Expect = 1e-11
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 71 MNECEQP----GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110
++EC+ C C N G + CSC GYVL + TC
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (92), Expect = 2e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 32 ECKHKFGL---CSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
EC+ G C + CH G C+C G +L + TC +
Sbjct: 3 ECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (136), Expect = 2e-11
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 69 QDMNEC-EQPGYCS-QMCTNTKGSYICSCNEGYVLEYDNHTC 108
+D++EC E PG C C NT GS+ C C GY L D C
Sbjct: 1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (89), Expect = 6e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTCQ 69
D+ EC+ GLC C T C CP G L+ D+ C
Sbjct: 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (133), Expect = 6e-11
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGYVL-EYDNHTC 108
D++ECE G+CS +C N G++ C C L C
Sbjct: 1 DIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (133), Expect = 7e-11
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C N G C Q C + S +CSC GY L + C
Sbjct: 3 CSLDN-----GDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 42
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (107), Expect = 2e-07
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
C G C CH +C+C G L+++ C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 44
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.8 bits (132), Expect = 9e-11
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C N G C Q C + CSC GYVL D+ +C +
Sbjct: 1 CSLDN-----GGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTE 40
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.1 bits (112), Expect = 4e-08
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNECEQPGYC 80
C G C C C+C G +L +DS +C +
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPCGKFT 48
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (131), Expect = 9e-11
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 72 NECEQ-PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109
NEC G CS +C + K Y C C +G+ L C+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (93), Expect = 1e-05
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69
EC G CS+ C+ +G C CP G L C+
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (130), Expect = 2e-10
Identities = 14/45 (31%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 68 CQDMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAIN 112
C N G C+ C G CSC GY L D C
Sbjct: 2 CSLDN-----GGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAV 41
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (105), Expect = 4e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74
C G C++ C C+C PG L +D + C +
Sbjct: 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (129), Expect = 2e-10
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 70 DMNECEQP-GYCSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
D+NEC P S C NT GSYIC C + L C
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (93), Expect = 1e-05
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
D+ EC S C TP +C CPP L+ V C D
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (129), Expect = 2e-10
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 67 TCQDMNECEQPGY-CSQMCTNTKGSYICSCNEGYVLEYDNHTC 108
+ DM+EC++P C NT GSY C C GY+L + C
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNEC 41
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.002
Identities = 14/42 (33%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70
D+ ECK C T C CP G IL C D
Sbjct: 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (128), Expect = 3e-10
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 70 DMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108
D++EC++ P C +C NT+GSY C C G+ L + C
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (86), Expect = 1e-04
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTC 68
D+ EC+ LC CH T C CPPG LS + C
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (116), Expect = 1e-08
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 66 VTCQDMNECEQPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAI 111
+TC N G C Q C N+ +CSC EGY L + +C+
Sbjct: 1 MTCNIKN-----GRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA 42
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (95), Expect = 1e-05
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 33 CKHKFGLCSNTCHPTP-LGALCTCPPGEILSNDSVTCQDMNEC 74
C K G C C + +C+C G L+ + +C+
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (112), Expect = 4e-08
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 68 CQDMNECEQPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAI 111
C + N G C Q C++ G C C+EGY L D +C
Sbjct: 2 CVNEN-----GGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT 41
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (90), Expect = 5e-05
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 33 CKHKFGLCSNTCHPTPLGA-LCTCPPGEILSNDSVTCQDMNEC 74
C ++ G C C C C G L D V+C E
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (104), Expect = 4e-07
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 70 DMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLEY-DNHTC 108
D++EC P C + C NT G + C C+EGY + C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (103), Expect = 7e-07
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 71 MNECEQP----GYCSQMC------TNTKGSYICSCNEGYVLEYDNHTC 108
+N CE+ G C +C + C+C +G +L D +C
Sbjct: 1 VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 14/238 (5%)
Query: 152 EGLAYDWIGGHIYWLDSRLN-RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFW 210
G+A D G++Y + R+ T VL + + QP+G+ +D + +
Sbjct: 17 SGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF 75
Query: 211 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIK 270
+ + + + VY AD + + + K
Sbjct: 76 NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT------QGAVYVADRGNNRVVKLAAGSK 129
Query: 271 TNVNYSTI-FRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYY 329
T + +G N + Q+ + +
Sbjct: 130 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL----PFTDITAPW 185
Query: 330 STLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387
+ ++ ++ + + + T + P + +D + R VY AD
Sbjct: 186 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADR 242
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.8 bits (83), Expect = 0.004
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 156 YDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE 215
G +Y + N++ T VL + P + +D R ++ D G
Sbjct: 188 AVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD---RTVYVADRGN 244
Query: 216 NPRIERI 222
+ R+ ++
Sbjct: 245 D-RVVKL 250
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (83), Expect = 3e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 69 QDMNECEQ-PGYCSQ--MCTNTKGSYICSCNEGY 99
QD++EC C C NT GS+ C C +GY
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY 34
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 21/220 (9%), Positives = 54/220 (24%), Gaps = 15/220 (6%)
Query: 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLF 209
+EGL +D G ++ LD I + + P + + +
Sbjct: 41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCY 99
Query: 210 WTDWGENPRIERIGMDGSNRSTIIST--KIYWPNGLTLDIATRRVYFADSK--------L 259
D+ I +G N II Y + + D + +
Sbjct: 100 LGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV 159
Query: 260 DFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM---DGSNASILVSGQLYE 316
++ + + ++ + + + + + + +
Sbjct: 160 YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 219
Query: 317 ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG 356
+ + L+ +G R+ G
Sbjct: 220 IPYYFTGHEGPDSCCIDSDDNLYVAMYG-QGRVLVFNKRG 258
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.9 bits (89), Expect = 9e-04
Identities = 31/239 (12%), Positives = 61/239 (25%), Gaps = 7/239 (2%)
Query: 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVL---AKDNITQPRGMMLDPSPGTRWLF 209
G+A + I D+ +RI++ D+ G + K + + + +
Sbjct: 27 GVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDII 85
Query: 210 WTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEI 269
T+ +I+ G +T + P G R+ + K+ +
Sbjct: 86 VTERSPTHQIQIYNQYGQFVRKFGATILQHPRG-VTVDNKGRIIVVECKVMRVIIFDQNG 144
Query: 270 KTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYY 329
+ + N N GQ + +
Sbjct: 145 NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIG 204
Query: 330 STLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADS 387
+ + D N + DG S + S K + L V A
Sbjct: 205 VGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALM-DDGSVVLASK 262
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 34.8 bits (80), Expect = 0.001
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 84 CTNTKGSYICSCNEGYVLEYDNHTCKA 110
C + + C C Y + C A
Sbjct: 15 CRDYATGFCCRCVANYTG--NGRQCVA 39
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.4 bits (79), Expect = 0.001
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP 26
RC+ CDG DC + +DE P
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAP 39
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.0 bits (78), Expect = 0.001
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP 26
C+ CD DC +G+DE P
Sbjct: 14 TCIPQLWACDNDPDCEDGSDEWP 36
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 34.1 bits (78), Expect = 0.002
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGPG-CD 29
C++ VCDG DC N DE P CD
Sbjct: 15 ECISDLLVCDGHKDCHNAHDEDPDVCD 41
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.9 bits (78), Expect = 0.002
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
+C++ VCD DC +G+DE
Sbjct: 14 KCISRQFVCDSDRDCLDGSDE 34
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP 26
C++ CDG+ DC +G+DE P
Sbjct: 16 ECIHDLLFCDGEKDCRDGSDEDP 38
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.6 bits (77), Expect = 0.002
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C+ L CDG TDC + +DE
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDE 36
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Score = 33.7 bits (77), Expect = 0.002
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C +CDG DC +G DE
Sbjct: 18 ECYPQDWLCDGHPDCDDGRDE 38
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.5 bits (77), Expect = 0.002
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C++ ++ CD + DC + +DE
Sbjct: 14 NCIHGSRQCDREYDCKDMSDE 34
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.6 bits (77), Expect = 0.002
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
RC+ CDG+ DC NG+DE
Sbjct: 18 RCIPQFWRCDGQVDCDNGSDE 38
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.6 bits (77), Expect = 0.002
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
C++ + CDG DC + +DE
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDE 33
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.6 bits (77), Expect = 0.003
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
RC+ CDG DC + +DE
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDE 36
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.6 bits (77), Expect = 0.003
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 4 RCVNLTKVCDGKTDCPNGADEGP 26
C+ L KVC+ DC + +DE
Sbjct: 18 ECITLDKVCNMARDCRDWSDEPI 40
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.3 bits (76), Expect = 0.003
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 DRCVNLTKVCDGKTDCPNGADE 24
+C+ ++ CDG+ DC +G DE
Sbjct: 13 TQCIPVSWRCDGENDCDSGEDE 34
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44 | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 33.2 bits (76), Expect = 0.003
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 4 RCVNLTKVCDGKTDCPNGADE 24
+C++ VCDG +C +G+DE
Sbjct: 19 KCISYKWVCDGSAECQDGSDE 39
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 461 | |||
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.86 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.85 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.84 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.74 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.74 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.73 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.67 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.66 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.44 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.33 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.23 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.15 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.14 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 99.03 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.92 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.89 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1i0ua2 | 41 | Low density lipoprotein (LDL) receptor, different | 98.79 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.76 | |
| d1uzka1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.74 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.73 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 98.71 | |
| d1szba2 | 45 | Mannose-binding protein associated serine protease | 98.71 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 98.7 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.7 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1nt0a3 | 45 | Mannose-binding protein associated serine protease | 98.68 | |
| d3bpse1 | 40 | Low density lipoprotein (LDL) receptor, different | 98.64 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.62 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1nzia2 | 42 | Complement C1S component {Human (Homo sapiens) [Ta | 98.58 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.53 | |
| d1emoa1 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1lmja2 | 42 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.52 | |
| d1uzka2 | 43 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.51 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.5 | |
| d1kigl_ | 51 | Factor X, N-terminal module {Cow (Bos taurus) [Tax | 98.49 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.48 | |
| d1apqa_ | 53 | Complement protease C1R {Human (Homo sapiens) [Tax | 98.48 | |
| d1autl2 | 50 | Activated protein c (autoprothrombin IIa) {Human ( | 98.46 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.46 | |
| d2p3ua1 | 51 | Factor X, N-terminal module {Human (Homo sapiens) | 98.42 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.4 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.39 | |
| d1lmja1 | 44 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.31 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.3 | |
| d1ijqa2 | 50 | Low density lipoprotein (LDL) receptor, different | 98.25 | |
| d1dx5i3 | 40 | Thrombomodulin, different EGF-like domains {Human | 98.25 | |
| d1f5ya2 | 41 | Ligand-binding domain of low-density lipoprotein r | 98.23 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.21 | |
| d1rfnb_ | 57 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 98.2 | |
| d1k7ba_ | 42 | soluble Tva ectodomain, sTva47 {Quail (Coturnix co | 98.2 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.16 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.14 | |
| d1cr8a_ | 42 | Ligand-binding domain of low-density lipoprotein r | 98.12 | |
| d2fcwb1 | 39 | Ligand-binding domain of low-density lipoprotein r | 98.11 | |
| d1f8za_ | 39 | Ligand-binding domain of low-density lipoprotein r | 98.11 | |
| d1v9u5_ | 39 | Very low-density lipoprotein receptor {Human (Homo | 98.08 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.07 | |
| d1ajja_ | 37 | Ligand-binding domain of low-density lipoprotein r | 98.07 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.05 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 98.05 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.03 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.01 | |
| d2gtlo2 | 41 | Extracellular hemoglobin linker l3 subunit {Common | 98.01 | |
| d1xfea2 | 44 | Ligand-binding domain of low-density lipoprotein r | 97.96 | |
| d2gtln2 | 41 | Extracellular hemoglobin linker l2 subunit {Common | 97.96 | |
| d2bz6l1 | 53 | Coagulation factor VIIa {Human (Homo sapiens) [Tax | 97.96 | |
| d2gtlm2 | 42 | Hemoglobin linker chain l1 {Common earthworm (Lumb | 97.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.92 | |
| d2fcwb2 | 39 | Ligand-binding domain of low-density lipoprotein r | 97.92 | |
| d1f5ya1 | 44 | Ligand-binding domain of low-density lipoprotein r | 97.91 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.91 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.9 | |
| d1d2la_ | 45 | Ligand-binding domain of low-density lipoprotein r | 97.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.79 | |
| d1j8ea_ | 44 | Ligand-binding domain of low-density lipoprotein r | 97.66 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.65 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.63 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.53 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 97.39 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 97.36 | |
| d2vj3a1 | 42 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.33 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.32 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.31 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 97.3 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.29 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.29 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 97.07 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.94 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 96.93 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.92 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.72 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 96.7 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.6 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 96.46 | |
| d1gl4a2 | 40 | EGF-like domain of nidogen-1 {Mouse (Mus musculus) | 96.12 | |
| d1edmb_ | 39 | Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 | 96.03 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.97 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 95.84 | |
| d2c4fl1 | 37 | Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | 95.82 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.67 | |
| d2vj3a2 | 39 | Neurogenic locus notch homolog protein 1, Notch1 { | 95.58 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 95.54 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 94.98 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 94.68 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.2 | |
| d1cvua2 | 41 | Prostaglandin H2 synthase-1, EGF-like module {Mous | 94.02 | |
| d1tpga1 | 41 | Plasminogen activator (tissue-type), t-PA {Human ( | 93.94 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.7 | |
| d1xkba1 | 39 | Factor X, N-terminal module {Human (Homo sapiens) | 93.69 | |
| d2vj3a3 | 35 | Neurogenic locus notch homolog protein 1, Notch1 { | 93.37 | |
| d1emoa2 | 39 | Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.68 | |
| d1autl1 | 48 | Activated protein c (autoprothrombin IIa) {Human ( | 92.33 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 91.8 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 91.55 | |
| d1haea_ | 63 | Heregulin-alpha, EGF-like domain {Human (Homo sapi | 91.42 | |
| d1g1sa2 | 40 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 90.59 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 90.03 | |
| d3egfa_ | 53 | Epidermal growth factor, EGF {Mouse (Mus musculus) | 90.01 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 89.5 | |
| d1g1ta2 | 39 | E-selectin, EGF-domain {Human (Homo sapiens) [TaxI | 89.33 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 88.79 | |
| d1dx5i1 | 43 | Thrombomodulin, different EGF-like domains {Human | 88.64 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 88.09 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 87.26 | |
| d1nqlb_ | 48 | Epidermal growth factor, EGF {Human (Homo sapiens) | 85.75 | |
| d1dx5i2 | 35 | Thrombomodulin, different EGF-like domains {Human | 84.64 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 84.53 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 83.27 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 82.26 | |
| d1q4ga2 | 42 | Prostaglandin H2 synthase-1, EGF-like module {Shee | 82.1 |
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-35 Score=277.84 Aligned_cols=242 Identities=23% Similarity=0.384 Sum_probs=210.2
Q ss_pred eeEEEeccccceeecccccCcccc-cceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCc
Q psy17325 116 AFLIISNRHSILVADLEEKGKDHR-AQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQP 194 (461)
Q Consensus 116 ~~l~~~~~~~I~~~~l~~~~~~~s-~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p 194 (461)
.||+++..+.|+++++++...... ....+......+.+|++|+.++.|||+|...++|.+++++|+..++++..++..|
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 589999999999999876654432 2333444455688999999999999999999999999999999999988888899
Q ss_pred eeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeec
Q psy17325 195 RGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN 274 (461)
Q Consensus 195 ~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~ 274 (461)
.+||+|+..+ .|||+| ....+|.+++++|+.+++++..++..|.+|++|+..+.|||++.....
T Consensus 82 ~~iAvD~~~~--~lY~~d-~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~------------- 145 (263)
T d1npea_ 82 EGIALDHLGR--TIFWTD-SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN------------- 145 (263)
T ss_dssp EEEEEETTTT--EEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS-------------
T ss_pred cEEEEeccCC--eEEEec-cCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCC-------------
Confidence 9999999988 999999 556799999999999988888888999999999999999999876532
Q ss_pred cceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEE
Q psy17325 275 YSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERI 352 (461)
Q Consensus 275 ~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~ 352 (461)
.+|+++++||+.+++++...+ |.|||+|+.+++|||+|.+ .++|+++
T Consensus 146 -------------------~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~------------~~~I~~~ 194 (263)
T d1npea_ 146 -------------------PKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG------------THRAECL 194 (263)
T ss_dssp -------------------CEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred -------------------cEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC------------CCEEEEE
Confidence 469999999999999987776 9999999999999999887 8899999
Q ss_pred eecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEE
Q psy17325 353 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILI 408 (461)
Q Consensus 353 ~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~ 408 (461)
+++|..+++++ ..+..|.||+++ +++|||+|+..++|.++++. +|....++.
T Consensus 195 ~~~g~~~~~v~-~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~-~g~~~~~~~ 246 (263)
T d1npea_ 195 NPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA-ISKEMDTFH 246 (263)
T ss_dssp ETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETT-TTEEEEEEC
T ss_pred ECCCCCeEEEE-CCCCCcEEEEEE--CCEEEEEECCCCEEEEEECC-CCccceEEC
Confidence 99999999888 778899999995 89999999999999999993 455544443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-35 Score=273.35 Aligned_cols=225 Identities=23% Similarity=0.467 Sum_probs=186.5
Q ss_pred EEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC----cEEEEecccc
Q psy17325 163 IYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN----RSTIISTKIY 238 (461)
Q Consensus 163 ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~----~~~i~~~~~~ 238 (461)
|++++. +.|.+.++++.....++. ++.+|.+|++|+..+ +|||+| .....|.++.++|.. .++++..++.
T Consensus 4 Ll~s~~--~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~--~lYw~D-~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 4 LFFTNR--HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASN--RIYWSD-LSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEECB--SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTT--EEEEEE-TTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC--CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCC--EEEEEE-CCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 555554 579999999998888765 567899999999988 999999 556799999999853 4566777788
Q ss_pred cceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--ee
Q psy17325 239 WPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YE 316 (461)
Q Consensus 239 ~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~ 316 (461)
.|.||||||.+++|||+|... ++|++++++|..+.+++...+ |.
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~----------------------------------~~I~v~~~~g~~~~~~~~~~~~~P~ 123 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVL----------------------------------GTVSVADTKGVKRKTLFRENGSKPR 123 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTT----------------------------------TEEEEEETTSSSEEEEEECTTCCEE
T ss_pred CcceEEEeeccceEEEEecCC----------------------------------CEEEeEecCCceEEEEEcCCCCCcc
Confidence 999999999999999999877 468999999999888887766 99
Q ss_pred eEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEE
Q psy17325 317 ALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCN 396 (461)
Q Consensus 317 ~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~ 396 (461)
+|++||..|.|| |++++..++|+|++|||+++++++...+.+|+||++|+.+++|||+|...++|++++
T Consensus 124 ~l~vd~~~g~ly-----------~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~ 192 (266)
T d1ijqa1 124 AIVVDPVHGFMY-----------WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 192 (266)
T ss_dssp EEEEETTTTEEE-----------EEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEcccCeEE-----------EeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEE
Confidence 999999887555 556677789999999999999999888999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee-ecc
Q psy17325 397 YDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL-KTP 449 (461)
Q Consensus 397 ~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i-~~~ 449 (461)
+ +|..+.++......+ ..|++|++++++|||||+.++.| |+.
T Consensus 193 ~--dG~~~~~~~~~~~~~---------~~p~~lav~~~~ly~td~~~~~I~~~~ 235 (266)
T d1ijqa1 193 V--NGGNRKTILEDEKRL---------AHPFSLAVFEDKVFWTDIINEAIFSAN 235 (266)
T ss_dssp T--TSCSCEEEEECTTTT---------SSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred C--CCCCEEEEEeCCCcc---------cccEEEEEECCEEEEEECCCCeEEEEE
Confidence 9 455544444433333 34899999999999999999877 443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-34 Score=267.48 Aligned_cols=238 Identities=24% Similarity=0.365 Sum_probs=203.8
Q ss_pred eeEEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc----EEEEecCCC
Q psy17325 116 AFLIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN----RIVLAKDNI 191 (461)
Q Consensus 116 ~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~----~~~l~~~~~ 191 (461)
+||++++.+.|+++++++..+ ..+.+++..|.+|++|+.++.|||+|...+.|.+++++|.. .++++...+
T Consensus 2 ~fLl~s~~~~I~~~~l~~~~~-----~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 2 AYLFFTNRHEVRKMTLDRSEY-----TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp CEEEEECBSSEEEEETTSCCC-----EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred CEEEEECCCeEEEEECCCCcc-----eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 689999999999999876543 33567889999999999999999999999999999998743 456667778
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~ 271 (461)
..|.+||+|+.++ .|||+| ....+|++++++|.....++...+..|.+|++|+..+.|||++....
T Consensus 77 ~~p~glAvD~~~~--~lY~~d-~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~----------- 142 (266)
T d1ijqa1 77 QAPDGLAVDWIHS--NIYWTD-SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP----------- 142 (266)
T ss_dssp SCCCEEEEETTTT--EEEEEE-TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-----------
T ss_pred CCcceEEEeeccc--eEEEEe-cCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCC-----------
Confidence 8999999999999 999999 56679999999999988888888899999999999999999986542
Q ss_pred eeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 272 ~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
.+|+++++||+.+++++...+ |.||++|+.+++|||+|.. .++|
T Consensus 143 ----------------------~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~------------~~~I 188 (266)
T d1ijqa1 143 ----------------------AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK------------LHSI 188 (266)
T ss_dssp ----------------------CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEE
T ss_pred ----------------------cceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC------------cCEE
Confidence 469999999999999987766 9999999999999999888 8899
Q ss_pred EEEeecCCCeEEEee--CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEc
Q psy17325 350 ERIGMDGSNRSTIIS--TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILID 409 (461)
Q Consensus 350 ~~~~~dG~~~~~l~~--~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~ 409 (461)
+++++||+++++++. ..+..|.|||++ +++|||+|...+.|+++++. +|.....+..
T Consensus 189 ~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~-~g~~~~~~~~ 247 (266)
T d1ijqa1 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL-TGSDVNLLAE 247 (266)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT-TCCCCEEEEC
T ss_pred EEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC-CCcceEEEEc
Confidence 999999999888864 346789999995 79999999999999999984 5665555554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.7e-35 Score=271.94 Aligned_cols=224 Identities=25% Similarity=0.414 Sum_probs=187.3
Q ss_pred EEEEeCCCCeEEEEeCCCCcEE-----EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEeccc
Q psy17325 163 IYWLDSRLNRIEVCDENGTNRI-----VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKI 237 (461)
Q Consensus 163 ly~~d~~~~~I~~~~~~G~~~~-----~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~ 237 (461)
|+++.. +.|.+..++|.... ..+......+.||++|+.++ +|||+| ....+|+++.++|+..++++..++
T Consensus 4 Ll~s~~--~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~--~iywsd-~~~~~I~~~~l~g~~~~~v~~~~~ 78 (263)
T d1npea_ 4 LLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK--VVYWTD-ISEPSIGRASLHGGEPTTIIRQDL 78 (263)
T ss_dssp EEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT--EEEEEE-TTTTEEEEEESSSCCCEEEECTTC
T ss_pred EEEeCC--CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCC--EEEEEE-CCCCeEEEEEcccCCcEEEEEecc
Confidence 555555 58999999887532 22222224578999999988 999999 556799999999999999998888
Q ss_pred ccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--e
Q psy17325 238 YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--Y 315 (461)
Q Consensus 238 ~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p 315 (461)
..|.+|||||.+++|||+|... +.|++++++|+.+++++...+ |
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~----------------------------------~~I~~~~~dg~~~~~l~~~~l~~p 124 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQL----------------------------------DRIEVAKMDGTQRRVLFDTGLVNP 124 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTT----------------------------------TEEEEEETTSCSCEEEECSSCSSE
T ss_pred ccccEEEEeccCCeEEEeccCC----------------------------------CEEEEEecCCceEEEEecccccCC
Confidence 8999999999999999999876 468999999999999887766 9
Q ss_pred eeEEEeccCCeEEEeecCceeeEEEeecC-CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEE
Q psy17325 316 EALALDLENGMLYYSTLKCTRWLFWTDWG-ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDF 394 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~~~~~l~~~d~~-~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~ 394 (461)
.+|++||..|.|||++ ++ ..++|+|++|||+++++++..++.+|.|||+|+.+++|||+|.+.++|++
T Consensus 125 ~~l~vdp~~g~ly~t~-----------~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~ 193 (263)
T d1npea_ 125 RGIVTDPVRGNLYWTD-----------WNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193 (263)
T ss_dssp EEEEEETTTTEEEEEE-----------CCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cEEEEecccCcEEEee-----------cCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEE
Confidence 9999999988766654 44 35689999999999999998899999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCcee-ecce
Q psy17325 395 CNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFL-KTPL 450 (461)
Q Consensus 395 ~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i-~~~~ 450 (461)
+++ +|..+.++..+ + ..|++|++++++|||||++++.| |+.+
T Consensus 194 ~~~--~g~~~~~v~~~---~---------~~P~~lav~~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 194 LNP--AQPGRRKVLEG---L---------QYPFAVTSYGKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp EET--TEEEEEEEEEC---C---------CSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEC--CCCCeEEEECC---C---------CCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence 999 67766655542 2 24789999999999999999877 5544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.92 E-value=1.1e-23 Score=195.82 Aligned_cols=231 Identities=21% Similarity=0.329 Sum_probs=176.2
Q ss_pred cceeeeeeeecCCeEEEEeCCC-CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRL-NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~-~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
..|.+||+| ..+++|+++... ++|.+.+..+.....+....+..|.+||+|+. | .|||+| ..+. +.+...++.
T Consensus 14 ~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g--~i~v~d-~~~~-~i~~~~~~~ 87 (260)
T d1rwia_ 14 LSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-G--TVYVTD-FNNR-VVTLAAGSN 87 (260)
T ss_dssp CCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTT-C--CEEEEE-TTTE-EEEECTTCS
T ss_pred CCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCC-C--CEEEee-eeec-eeeeeeecc
Confidence 379999999 468899998654 68899888888777776677788999999986 6 699999 4443 444555566
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
....+....+..|.+|++|+ .++|||+|.... ++.+...++....
T Consensus 88 ~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~----------------------------------~~~~~~~~~~~~~ 132 (260)
T d1rwia_ 88 NQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNN----------------------------------RVVKLAAGSKTQT 132 (260)
T ss_dssp CCEECCCCSCCSEEEEEECT-TCCEEEEEGGGT----------------------------------EEEEECTTCSSCE
T ss_pred ceeeeeeeeeeecccccccc-cceeEeeccccc----------------------------------cccccccccceee
Confidence 66555555678899999997 678999987663 4677777777766
Q ss_pred EEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 308 ILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 308 ~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
......+ |++|++|+ .++||+++.. ..+|.+.+.+|..+..+....+..|.||++| .+++|||+
T Consensus 133 ~~~~~~~~~p~~i~~~~-~g~~~v~~~~------------~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d-~~g~l~vs 198 (260)
T d1rwia_ 133 VLPFTGLNDPDGVAVDN-SGNVYVTDTD------------NNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVT 198 (260)
T ss_dssp ECCCCSCCSCCEEEECT-TCCEEEEEGG------------GTEEEEECTTTCCEEECCCSSCCSEEEEEEC-TTCCEEEE
T ss_pred eeeecccCCcceeeecC-CCCEeeeccc------------cccccccccccceeeeeeccccCCCccceee-eeeeeeee
Confidence 6554444 99999997 5678988877 7899999999998887776889999999999 56899999
Q ss_pred cCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceee
Q psy17325 386 DSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 386 d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~ 447 (461)
|...++|.+++. ++....++.. .+ +..|.+|+++ +|.|||+|+++++|+
T Consensus 199 d~~~~~i~~~~~--~~~~~~~~~~--~~---------~~~P~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 199 EHNTNQVVKLLA--GSTTSTVLPF--TG---------LNTPLAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp ETTTTEEEEECT--TCSCCEECCC--CS---------CCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCCEEEEEeC--CCCeEEEEcc--CC---------CCCeEEEEEeCCCCEEEEECCCCEEE
Confidence 999999999998 4444333211 11 2247788887 479999999999886
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.88 E-value=7.1e-21 Score=178.43 Aligned_cols=239 Identities=14% Similarity=0.217 Sum_probs=182.8
Q ss_pred ccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-----CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEE
Q psy17325 148 LDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-----DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERI 222 (461)
Q Consensus 148 ~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-----~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~ 222 (461)
|..|.|||||+ .++||++|..+++|.+.+++|...+.+.. .....|.+++++...+ ..+|+....+.+|.+.
T Consensus 22 f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~i~~~ 98 (279)
T d1q7fa_ 22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIY 98 (279)
T ss_dssp BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEE
T ss_pred ECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccccccccccccccc--ccceeccCCccccccc
Confidence 67899999996 68899999999999999999988776633 2345799999988777 6777664566799999
Q ss_pred ecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 223 GMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 223 ~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
+.+|.....+....+..|.++++|. .+++|+++... +++.+.+.+
T Consensus 99 ~~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~----------------------------------~~~~~~~~~ 143 (279)
T d1q7fa_ 99 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKV----------------------------------MRVIIFDQN 143 (279)
T ss_dssp CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTT----------------------------------TEEEEECTT
T ss_pred cccccceeecCCCcccccceecccc-CCcEEEEeecc----------------------------------ceeeEeccC
Confidence 9999876666556778899999995 67899998876 356777888
Q ss_pred CCceEEEEeCC-e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-CCCCCceeEEEecC
Q psy17325 303 GSNASILVSGQ-L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLDIA 378 (461)
Q Consensus 303 g~~~~~l~~~~-~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~ 378 (461)
|+....+-... + |.+|++|+ +++||+++.. .++|++.+.+|+....+.. ..+..|.||++| .
T Consensus 144 g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD-~ 209 (279)
T d1q7fa_ 144 GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGIN-S 209 (279)
T ss_dssp SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEEC-T
T ss_pred Cceeecccccccccccceeeecc-ceeEEeeecc------------ccceeeeecCCceeeeecccccccCCcccccc-c
Confidence 87655543322 2 99999995 6789999887 7899999999987766653 367889999999 5
Q ss_pred CCeEEEEcCCCC-eEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee-CCEEEEEeCCCceeeccee
Q psy17325 379 TRRVYFADSKLD-FIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE-NGMLYYSTEGAEFLKTPLF 451 (461)
Q Consensus 379 ~~~ly~~d~~~~-~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lYwtd~~~~~i~~~~~ 451 (461)
+++||++|...+ +|..++. +|.....+...... ..|.+|++. ++.||+++. +++|++..|
T Consensus 210 ~G~i~Vad~~~~~~v~~f~~--~G~~~~~~~~~~~~----------~~p~~vav~~dG~l~V~~~-n~~v~~fr~ 271 (279)
T d1q7fa_ 210 NGEILIADNHNNFNLTIFTQ--DGQLISALESKVKH----------AQCFDVALMDDGSVVLASK-DYRLYIYRY 271 (279)
T ss_dssp TCCEEEEECSSSCEEEEECT--TSCEEEEEEESSCC----------SCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEECC--CCCEEEEEeCCCCC----------CCEeEEEEeCCCcEEEEeC-CCeEEEEEe
Confidence 678999998654 7888887 78765555433221 236777776 569999995 677765433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.86 E-value=3.9e-20 Score=176.33 Aligned_cols=255 Identities=14% Similarity=0.126 Sum_probs=173.8
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCC-------CCeEEEEeCCCCcEEEEecC----CCCCceeEEEcCCCCceEEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSR-------LNRIEVCDENGTNRIVLAKD----NITQPRGMMLDPSPGTRWLFW 210 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~-------~~~I~~~~~~G~~~~~l~~~----~~~~p~~ia~d~~~g~~~ly~ 210 (461)
+.+..++..|||+++|. .++||+++.. +++|.++++++...+.+... ....|.||++|+..+ .||+
T Consensus 11 ~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~v 87 (314)
T d1pjxa_ 11 TKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFV 87 (314)
T ss_dssp EEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEE
T ss_pred EEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEE
Confidence 35678999999999996 6789999865 46899999988776655432 123599999999977 8999
Q ss_pred eecCCCCcEEEEecCCCCcEEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 211 TDWGENPRIERIGMDGSNRSTIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 211 td~~~~~~I~~~~~dG~~~~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
+| . ...|.+++.+|...+.+... .+..|+++++|+ .++||++|.....-.... .
T Consensus 88 ad-~-~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~-------------------~ 145 (314)
T d1pjxa_ 88 AD-M-RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADY-------------------T 145 (314)
T ss_dssp EE-T-TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCC-------------------C
T ss_pred EE-C-CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccc-------------------c
Confidence 98 3 35799999998755443322 345799999997 589999986432100000 0
Q ss_pred cCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCC----eEEEeecCceeeEEEeecCCCCceEEEeecCCC----
Q psy17325 287 EGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENG----MLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN---- 358 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~----~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~---- 358 (461)
.....-.+.|++.+.+|+..++......|+||++++..+ .||++++. +.+|++.++++..
T Consensus 146 ~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~------------~~~i~~~d~~~~g~~~~ 213 (314)
T d1pjxa_ 146 RSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP------------TKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp BTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT------------TTEEEEEEEEETTEEEE
T ss_pred ceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec------------ccceEEeeccCccccce
Confidence 000000157888999987655543322299999988764 68888877 8889998875432
Q ss_pred eEEEee---CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeE-EEEEccccceeeccCCCCCcceEEEeeeCC
Q psy17325 359 RSTIIS---TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQ-VILIDLMVEFTNDLMGDNGVPALALDLENG 434 (461)
Q Consensus 359 ~~~l~~---~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (461)
++++.. .....|.||++| .+|+||+++...++|.+++. +|... ..+....... ..+++..+++
T Consensus 214 ~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp--~~g~~~~~i~~p~~~~----------t~~afg~d~~ 280 (314)
T d1pjxa_ 214 KKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGP--DGGQPKMRIRCPFEKP----------SNLHFKPQTK 280 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECT--TCBSCSEEEECSSSCE----------EEEEECTTSS
T ss_pred eeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEEeC--CCCEEEEEEECCCCCE----------EEEEEeCCCC
Confidence 223332 234569999999 77899999999999999998 44432 2222211111 1234444455
Q ss_pred EEEEEeCCCcee
Q psy17325 435 MLYYSTEGAEFL 446 (461)
Q Consensus 435 ~lYwtd~~~~~i 446 (461)
.||+|+..++.|
T Consensus 281 ~lyVt~~~~g~i 292 (314)
T d1pjxa_ 281 TIFVTEHENNAV 292 (314)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCcE
Confidence 799999998877
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=1.6e-20 Score=174.07 Aligned_cols=198 Identities=22% Similarity=0.340 Sum_probs=161.8
Q ss_pred EcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 145 VSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 145 ~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
..++..|.+||+|+ .++|||+|...+.|.+ ..++..........+..|.+||+|+. | .|||+| ..+.++.+...
T Consensus 53 ~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~-~~~~~~~~~~~~~~~~~p~~iavd~~-g--~i~v~d-~~~~~~~~~~~ 126 (260)
T d1rwia_ 53 FNGLYQPQGLAVDG-AGTVYVTDFNNRVVTL-AAGSNNQTVLPFDGLNYPEGLAVDTQ-G--AVYVAD-RGNNRVVKLAA 126 (260)
T ss_dssp CCSCCSCCCEEECT-TCCEEEEETTTEEEEE-CTTCSCCEECCCCSCCSEEEEEECTT-C--CEEEEE-GGGTEEEEECT
T ss_pred cCCccCceEEEEcC-CCCEEEeeeeeceeee-eeeccceeeeeeeeeeeccccccccc-c--eeEeec-ccccccccccc
Confidence 34567899999996 5789999998766654 44555555555566788999999985 5 699999 45578999999
Q ss_pred CCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 225 DGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 225 dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
++..........+..|.+|++|+ .++||+++... .+|.+.+.++.
T Consensus 127 ~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~----------------------------------~~i~~~d~~~~ 171 (260)
T d1rwia_ 127 GSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDN----------------------------------NRVVKLEAESN 171 (260)
T ss_dssp TCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGG----------------------------------TEEEEECTTTC
T ss_pred ccceeeeeeecccCCcceeeecC-CCCEeeecccc----------------------------------ccccccccccc
Confidence 99877666666788999999997 66799998766 35788888888
Q ss_pred ceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 305 NASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 305 ~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
...++....+ |.+|++|+ .|+|||++.. +++|.+...++...+.+....+..|.||++| .++.|
T Consensus 172 ~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~------------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d-~~g~l 237 (260)
T d1rwia_ 172 NQVVLPFTDITAPWGIAVDE-AGTVYVTEHN------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTV 237 (260)
T ss_dssp CEEECCCSSCCSEEEEEECT-TCCEEEEETT------------TTEEEEECTTCSCCEECCCCSCCCEEEEEEC-TTCCE
T ss_pred eeeeeeccccCCCccceeee-eeeeeeeecC------------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEe-CCCCE
Confidence 8777665555 99999997 5788988887 8899999999988877766788999999999 56899
Q ss_pred EEEcCCCCeEEEEEe
Q psy17325 383 YFADSKLDFIDFCNY 397 (461)
Q Consensus 383 y~~d~~~~~I~~~~~ 397 (461)
||+|.+.++|.+++.
T Consensus 238 ~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 238 YVADRGNDRVVKLTS 252 (260)
T ss_dssp EEEEGGGTEEEEECC
T ss_pred EEEECCCCEEEEEeC
Confidence 999999999999987
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.84 E-value=1.6e-18 Score=165.38 Aligned_cols=210 Identities=18% Similarity=0.203 Sum_probs=160.1
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC---CCcEEEEecCC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE---NPRIERIGMDG 226 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~---~~~I~~~~~dG 226 (461)
..||+++|. .++|||+|...++|.+++++|.............|.||++++. | .||+++.+. ...|.+.+..+
T Consensus 41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d-G--~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD-G--RLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT-S--CEEEEECTTSSSCCEEEEECTTS
T ss_pred CcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC-C--CEEEEecCCCccceeEEEEcCCC
Confidence 459999995 5689999999999999999998766555555567999999986 5 699987432 35688888887
Q ss_pred CCcEEEEec--ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCC
Q psy17325 227 SNRSTIIST--KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGS 304 (461)
Q Consensus 227 ~~~~~i~~~--~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~ 304 (461)
.....++.. ....|+++++|+ .++||++|........ .+.+++.+++|.
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~----------------------------~g~v~~~~~dg~ 167 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNP----------------------------LGGVYYVSPDFR 167 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBC----------------------------CEEEEEECTTSC
T ss_pred ceeeeeccCCCcccCCcceeEEe-ccceeecccccccccC----------------------------cceeEEEecccc
Confidence 776665543 456799999997 5689999865432110 046888999998
Q ss_pred ceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCC--CeEEE------eeCCCCCceeEEE
Q psy17325 305 NASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGS--NRSTI------ISTKIYWPNGLTL 375 (461)
Q Consensus 305 ~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~--~~~~l------~~~~l~~p~glai 375 (461)
..+.+..... |+||++++.++.||++++. +++|++.+++.. ..... .......|.||++
T Consensus 168 ~~~~~~~~~~~pnGia~s~dg~~lyvad~~------------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v 235 (319)
T d2dg1a1 168 TVTPIIQNISVANGIALSTDEKVLWVTETT------------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 235 (319)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGG------------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred eeEEEeeccceeeeeeeccccceEEEeccc------------CCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence 7766655333 9999999999999999988 889999987543 22211 1244567999999
Q ss_pred ecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 376 DIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 376 D~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
| .+|+||+++...++|.+++. +|.....+
T Consensus 236 D-~~G~l~Va~~~~g~V~~~~p--~G~~l~~i 264 (319)
T d2dg1a1 236 D-SDDNLYVAMYGQGRVLVFNK--RGYPIGQI 264 (319)
T ss_dssp B-TTCCEEEEEETTTEEEEECT--TSCEEEEE
T ss_pred c-CCCCEEEEEcCCCEEEEECC--CCcEEEEE
Confidence 9 77899999999999999998 78765444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.74 E-value=5.4e-16 Score=146.36 Aligned_cols=225 Identities=18% Similarity=0.198 Sum_probs=158.0
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC-
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN- 228 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~- 228 (461)
.|+++|+++ .++||++|...++|.+++.+|....... ....|.+||+++. | .||++++.. ..+.++.+++..
T Consensus 29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~~~~~~~--~~~~~~gla~~~d-G--~l~v~~~~~-~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQIHAT--VEGKVSGLAFTSN-G--DLVATGWNA-DSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEEE--CSSEEEEEEECTT-S--CEEEEEECT-TSCEEEEEECTTS
T ss_pred CcCCEEECC-CCCEEEEeCCCCEEEEEeCCCCEEEEEc--CCCCcceEEEcCC-C--CeEEEecCC-ceEEEEEeccccc
Confidence 689999997 5789999999999999999998654332 2257999999996 5 699998544 466666655432
Q ss_pred --cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 229 --RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 229 --~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
...........|+++++|. .+++|+++.... .|++.++++...
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~----------------------------------~i~~~~~~~~~~ 146 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLS-DTQYLTADSYRG----------------------------------AIWLIDVVQPSG 146 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESS-SSEEEEEETTTT----------------------------------EEEEEETTTTEE
T ss_pred ceeeccccCCccccceeEEcc-CCCEEeeccccc----------------------------------cceeeeccCCcc
Confidence 2222333567899999996 679999988764 355555555544
Q ss_pred EEEEeCC----------e--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE--EeeCCCCCcee
Q psy17325 307 SILVSGQ----------L--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST--IISTKIYWPNG 372 (461)
Q Consensus 307 ~~l~~~~----------~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~--l~~~~l~~p~g 372 (461)
.+..... . +.+|+.| ++.||+++.. .++|+++++++..... ........|.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~pdg 212 (302)
T d2p4oa1 147 SIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE------------KMLLLRIPVDSTDKPGEPEIFVEQTNIDD 212 (302)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT------------TTEEEEEEBCTTSCBCCCEEEEESCCCSS
T ss_pred eeEecCCccceeeccCccccccccccc--CCceeeecCC------------CCeEEeccccccccccccccccCCCCCcc
Confidence 4433321 1 7788776 6789998887 8899999887653221 11134667999
Q ss_pred EEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEee-----eCCEEEEEeCCC
Q psy17325 373 LTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDL-----ENGMLYYSTEGA 443 (461)
Q Consensus 373 laiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~lYwtd~~~ 443 (461)
|++| .+|+||+++...++|.+++. +|....+ .+...++. .|.++++ +++.||++..+.
T Consensus 213 ia~d-~dG~l~va~~~~~~V~~i~p--~G~~~~~-~~~~~~~~---------~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 213 FAFD-VEGNLYGATHIYNSVVRIAP--DRSTTII-AQAEQGVI---------GSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp EEEB-TTCCEEEECBTTCCEEEECT--TCCEEEE-ECGGGTCT---------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred eEEC-CCCCEEEEEcCCCcEEEECC--CCCEEEE-EecCCCCC---------CceEEEEcCCCCCCCEEEEECCCC
Confidence 9999 56789999999999999998 6765333 33332222 2556665 446899997664
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.74 E-value=2.7e-16 Score=149.38 Aligned_cols=201 Identities=17% Similarity=0.230 Sum_probs=149.6
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC----CCCCceeEEEcCCCCceEEEEeecCC----------
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD----NITQPRGMMLDPSPGTRWLFWTDWGE---------- 215 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~----~~~~p~~ia~d~~~g~~~ly~td~~~---------- 215 (461)
.|.||++|..++.||++|.. +.|.+++++|.....+... .+..|..+++|+. | .||++|...
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~-G--~lyvtd~~~~~~~~~~~~~ 147 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE-G--NLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp CEEEEEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTT-S--CEEEEECBCBCTTSCCCBT
T ss_pred cceeEEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCC-C--CEEEecCccCcccccccce
Confidence 58999999888889999875 6799999999876654332 2446899999987 5 699998421
Q ss_pred ----CCcEEEEecCCCCcEEEEecccccceeEEeeccCC----eeEEecCCCceeeecccceeeeeccceeeeEEEEEec
Q psy17325 216 ----NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR----RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDE 287 (461)
Q Consensus 216 ----~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~----~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~ 287 (461)
..+|++++.+|+... +...+..|+||++++..+ .||++|....+|
T Consensus 148 ~~~~~G~v~~~~~dg~~~~--~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i------------------------- 200 (314)
T d1pjxa_ 148 MQEKFGSIYCFTTDGQMIQ--VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL------------------------- 200 (314)
T ss_dssp TSSSCEEEEEECTTSCEEE--EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEE-------------------------
T ss_pred eccCCceEEEEeecCceeE--eeCCcceeeeeEECCCCCcceeEEEEEeecccce-------------------------
Confidence 247899999986433 334578899999987654 699999887554
Q ss_pred CCCCcceeeeEEeCC--CC--ceEEEEeCC-----eeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC
Q psy17325 288 GGNGVPLKIGKANMD--GS--NASILVSGQ-----LYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN 358 (461)
Q Consensus 288 ~~~~~~~~I~~~~~~--g~--~~~~l~~~~-----~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~ 358 (461)
.+.+++ |. .++++.... .|.||++|. .|+||+++.. .++|.+.+.+|..
T Consensus 201 ---------~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~------------~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 201 ---------WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWG------------SSHIEVFGPDGGQ 258 (314)
T ss_dssp ---------EEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEET------------TTEEEEECTTCBS
T ss_pred ---------EEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcC------------CCEEEEEeCCCCE
Confidence 443332 21 122333211 199999994 6889998877 7899999998776
Q ss_pred eEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 359 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 359 ~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
....+.....+|.++++.++.+.||++++..++|+++++...|.+
T Consensus 259 ~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~ 303 (314)
T d1pjxa_ 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK 303 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence 555444566789999998777789999999999999999666654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.73 E-value=3.2e-16 Score=149.21 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=147.5
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeee
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~ 272 (461)
...|+++|+. | .|||+| ....+|+|.+.+|......+......|.||+++. .++||+++.......
T Consensus 41 ~lEG~~~D~~-G--~Ly~~D-~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~--------- 106 (319)
T d2dg1a1 41 QLEGLNFDRQ-G--QLFLLD-VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKST--------- 106 (319)
T ss_dssp CEEEEEECTT-S--CEEEEE-TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSC---------
T ss_pred CcEeCEECCC-C--CEEEEE-CCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccc---------
Confidence 4589999976 6 699999 4567999999999876666666667899999997 578999875431100
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe----eeeEEEeccCCeEEEeecCceeeEEEeecCCCCc
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL----YEALALDLENGMLYYSTLKCTRWLFWTDWGENPR 348 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~ 348 (461)
..|...+.++.....+..... |+++++|+ .|.||+++... ......+.
T Consensus 107 ---------------------~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~------~~~~~~g~ 158 (319)
T d2dg1a1 107 ---------------------GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRG------YSTNPLGG 158 (319)
T ss_dssp ---------------------CEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCC------BTTBCCEE
T ss_pred ---------------------eeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeeccccc------ccccCcce
Confidence 346667777766666554322 99999997 55688887540 00112456
Q ss_pred eEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEE
Q psy17325 349 IERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALA 428 (461)
Q Consensus 349 I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (461)
|++.+.+|+..+.+. ..+..|+||++|++++.||++|...++|++++++.+|.............. .+ ...|-+
T Consensus 159 v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~---~~--~~~PdG 232 (319)
T d2dg1a1 159 VYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF---TG--HEGPDS 232 (319)
T ss_dssp EEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC---CS--SSEEEE
T ss_pred eEEEecccceeEEEe-eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeecc---CC--ccceee
Confidence 999999998877776 678899999999888899999999999999999766654332211111110 00 112567
Q ss_pred Eeee-CCEEEEEeCCCceee
Q psy17325 429 LDLE-NGMLYYSTEGAEFLK 447 (461)
Q Consensus 429 l~~~-~~~lYwtd~~~~~i~ 447 (461)
|+++ +|+||++++.++.|.
T Consensus 233 l~vD~~G~l~Va~~~~g~V~ 252 (319)
T d2dg1a1 233 CCIDSDDNLYVAMYGQGRVL 252 (319)
T ss_dssp EEEBTTCCEEEEEETTTEEE
T ss_pred eeEcCCCCEEEEEcCCCEEE
Confidence 7775 579999999998773
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.67 E-value=1.8e-14 Score=135.32 Aligned_cols=228 Identities=11% Similarity=0.054 Sum_probs=161.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.-||...|+..+.|||+|...++|.+.++++...++.... ..|.++++++. | .|+++. ...|.+.+.++...
T Consensus 19 LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~--~~~~~i~~~~d-g--~l~va~---~~gl~~~d~~tg~~ 90 (295)
T d2ghsa1 19 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP--FMGSALAKISD-S--KQLIAS---DDGLFLRDTATGVL 90 (295)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS--SCEEEEEEEET-T--EEEEEE---TTEEEEEETTTCCE
T ss_pred eeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECC--CCcEEEEEecC-C--CEEEEE---eCccEEeeccccee
Confidence 3488899999999999999999999999988776655333 35889999876 4 577765 24799999987776
Q ss_pred EEEEec----ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc
Q psy17325 230 STIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN 305 (461)
Q Consensus 230 ~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~ 305 (461)
+.+... ....|+.+++|+ .++||+++....... . .+.+++.. +|+.
T Consensus 91 ~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~------------------------~----~g~l~~~~-~g~~ 140 (295)
T d2ghsa1 91 TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAET------------------------G----AGSIYHVA-KGKV 140 (295)
T ss_dssp EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCT------------------------T----CEEEEEEE-TTEE
T ss_pred eEEeeeecCCCcccceeeEECC-CCCEEEEeccccccc------------------------c----ceeEeeec-CCcE
Confidence 666542 234699999997 678998874332110 0 02344443 3433
Q ss_pred eEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC------eEEEee--CCCCCceeEEEec
Q psy17325 306 ASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN------RSTIIS--TKIYWPNGLTLDI 377 (461)
Q Consensus 306 ~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~------~~~l~~--~~l~~p~glaiD~ 377 (461)
.++......|+|+++++.++.|||+++. ..+|++.++|+.. +..++. .....|.|+++|
T Consensus 141 ~~~~~~~~~~Ng~~~s~d~~~l~~~dt~------------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD- 207 (295)
T d2ghsa1 141 TKLFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD- 207 (295)
T ss_dssp EEEEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-
T ss_pred EEEeeccCCcceeeecCCCceEEEeecc------------cceeeEeeecccccccccceEEEeccCcccccccceEEc-
Confidence 3333222229999999999999999988 8889999887532 233332 345679999999
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeee---CCEEEEEeCC
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLE---NGMLYYSTEG 442 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~lYwtd~~ 442 (461)
.+|+||++....+.|.+++. +|.....+....+ .|..+++- .+.||+|...
T Consensus 208 ~~GnlWva~~~~g~V~~~dp--~G~~~~~i~lP~~------------~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 208 AEGHIWNARWGEGAVDRYDT--DGNHIARYEVPGK------------QTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp TTSCEEEEEETTTEEEEECT--TCCEEEEEECSCS------------BEEEEEEESTTSCEEEEEEBC
T ss_pred CCCCEEeeeeCCCceEEecC--CCcEeeEecCCCC------------ceEEEEEeCCCCCEEEEEECC
Confidence 78899999999999999999 7877555433211 25666663 4689999764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.66 E-value=9.4e-15 Score=136.06 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=153.1
Q ss_pred cceeeeeeeecCCeEEEE-eCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWL-DSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~-d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
..|.+++++...+..+|+ +..+++|.+.+.+|.....+....+..|.++++|+. | .+|+++ ....++.+.+.+|+
T Consensus 70 ~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~-G--~i~v~~-~~~~~~~~~~~~g~ 145 (279)
T d1q7fa_ 70 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-G--RIIVVE-CKVMRVIIFDQNGN 145 (279)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTT-S--CEEEEE-TTTTEEEEECTTSC
T ss_pred cccccccccccccccceeccCCccccccccccccceeecCCCcccccceeccccC-C--cEEEEe-eccceeeEeccCCc
Confidence 468899988777766665 455679999999999888887777888999999976 5 699998 55678999999987
Q ss_pred CcEEEEe-cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 228 NRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 228 ~~~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
....+.. ..+..|.++++|. .++||++|... +.|.+.+.+|+..
T Consensus 146 ~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~----------------------------------~~V~~~d~~G~~~ 190 (279)
T d1q7fa_ 146 VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRA----------------------------------HCVKVFNYEGQYL 190 (279)
T ss_dssp EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGG----------------------------------TEEEEEETTCCEE
T ss_pred eeecccccccccccceeeecc-ceeEEeeeccc----------------------------------cceeeeecCCcee
Confidence 6555432 3577899999995 67899999876 4577888888876
Q ss_pred EEEEeCCe---eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-CCCCCceeEEEecCCCeE
Q psy17325 307 SILVSGQL---YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 307 ~~l~~~~~---p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~~~~l 382 (461)
..+...+. |.||++|+. |+||++|.. .+.+|...+.+|+....+.. .....|.+||+| .+++|
T Consensus 191 ~~~g~~g~~~~P~giavD~~-G~i~Vad~~-----------~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~-~dG~l 257 (279)
T d1q7fa_ 191 RQIGGEGITNYPIGVGINSN-GEILIADNH-----------NNFNLTIFTQDGQLISALESKVKHAQCFDVALM-DDGSV 257 (279)
T ss_dssp EEESCTTTSCSEEEEEECTT-CCEEEEECS-----------SSCEEEEECTTSCEEEEEEESSCCSCEEEEEEE-TTTEE
T ss_pred eeecccccccCCcccccccC-CeEEEEECC-----------CCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEe-CCCcE
Confidence 66644332 999999975 568887653 35679888999997777653 346689999999 56899
Q ss_pred EEEcCCCCeEEEEEe
Q psy17325 383 YFADSKLDFIDFCNY 397 (461)
Q Consensus 383 y~~d~~~~~I~~~~~ 397 (461)
|+++. .++|..++.
T Consensus 258 ~V~~~-n~~v~~fr~ 271 (279)
T d1q7fa_ 258 VLASK-DYRLYIYRY 271 (279)
T ss_dssp EEEET-TTEEEEEEC
T ss_pred EEEeC-CCeEEEEEe
Confidence 99984 788988887
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.44 E-value=1e-10 Score=107.58 Aligned_cols=236 Identities=13% Similarity=0.179 Sum_probs=155.5
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
..|.++++++.++.||+++...++|.+.++........+... ..|.++++++... .++.+. .....+...++....
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGK--QVYVTN-MASSTLSVIDTTSNT 107 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS--EEEEEE-TTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-ccccccccccccc--cccccc-cccceeeecccccce
Confidence 469999999999999999999999999998765544333333 5699999999877 888887 344566666665433
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
....+. ....|..+++.+.+..++.+...... +...+........
T Consensus 108 ~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~ 152 (301)
T d1l0qa2 108 VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT----------------------------------VSVINTVTKAVIN 152 (301)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTE----------------------------------EEEEETTTTEEEE
T ss_pred eeeecc-ccccceEEEeecCCCeeeeeeccccc----------------------------------eeeeeccccceee
Confidence 333332 34578899999888888887765532 3333333332222
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEc-
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFAD- 386 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d- 386 (461)
.+.... |..+++.+..+.+|++... ...+.............. .....|.++++++.+..+|++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~ 219 (301)
T d1l0qa2 153 TVSVGRSPKGIAVTPDGTKVYVANFD------------SMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNV 219 (301)
T ss_dssp EEECCSSEEEEEECTTSSEEEEEETT------------TTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEE
T ss_pred ecccCCCceEEEeeccccceeeeccc------------ccccccccccceeeeecc-cccCCcceeeccccccccccccc
Confidence 222223 8999999999999988765 333333333333333333 3445699999999999999874
Q ss_pred -CCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 387 -SKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 387 -~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
...+.|..+++ +++.....+.. ... +..++++.++.+||++.+.++.|++
T Consensus 220 ~~~~~~v~v~D~-~t~~~~~~~~~-~~~----------~~~va~spdg~~l~va~~~~~~i~v 270 (301)
T d1l0qa2 220 DKYFNTVSMIDT-GTNKITARIPV-GPD----------PAGIAVTPDGKKVYVALSFCNTVSV 270 (301)
T ss_dssp CSSCCEEEEEET-TTTEEEEEEEC-CSS----------EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred cceeeeeeeeec-CCCeEEEEEcC-CCC----------EEEEEEeCCCCEEEEEECCCCeEEE
Confidence 44578999998 24544332222 111 1134555567789999998887753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.41 E-value=1e-11 Score=116.44 Aligned_cols=190 Identities=17% Similarity=0.144 Sum_probs=128.2
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeee
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN 272 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~ 272 (461)
.|.+||++|. | .||+++ ....+|++++.+|... .+......|.+|++++ .++||+++...+.+.
T Consensus 29 ~~e~iAv~pd-G--~l~vt~-~~~~~I~~i~p~g~~~--~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~--------- 92 (302)
T d2p4oa1 29 FLENLASAPD-G--TIFVTN-HEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTS-NGDLVATGWNADSIP--------- 92 (302)
T ss_dssp CEEEEEECTT-S--CEEEEE-TTTTEEEEECTTCCEE--EEEECSSEEEEEEECT-TSCEEEEEECTTSCE---------
T ss_pred CcCCEEECCC-C--CEEEEe-CCCCEEEEEeCCCCEE--EEEcCCCCcceEEEcC-CCCeEEEecCCceEE---------
Confidence 4889999997 6 699999 4567999999998643 2333456899999997 567999987665432
Q ss_pred eccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceE
Q psy17325 273 VNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIE 350 (461)
Q Consensus 273 v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~ 350 (461)
.+.....+++...+...... |+++++++ .+++|+++.. .++|+
T Consensus 93 ----------------------~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~------------~~~i~ 137 (302)
T d2p4oa1 93 ----------------------VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSY------------RGAIW 137 (302)
T ss_dssp ----------------------EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETT------------TTEEE
T ss_pred ----------------------EEEecccccceeeccccCCccccceeEEcc-CCCEEeeccc------------cccce
Confidence 23333333443333332222 99999996 5789998887 66777
Q ss_pred EEeecCCCeEEEe----------eCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeE--EEEEccccceeecc
Q psy17325 351 RIGMDGSNRSTII----------STKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQ--VILIDLMVEFTNDL 418 (461)
Q Consensus 351 ~~~~dG~~~~~l~----------~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~--~~~~~~~~~~~~~~ 418 (461)
+.+.++....+.. ......|+||+.| .+.||+++...++|++++.++.+... ....+ .
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~----- 207 (302)
T d2p4oa1 138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---Q----- 207 (302)
T ss_dssp EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---S-----
T ss_pred eeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccC---C-----
Confidence 7776665444332 1345678999885 68999999999999999996544321 11111 0
Q ss_pred CCCCCcceEEEeee-CCEEEEEeCCCcee-ec
Q psy17325 419 MGDNGVPALALDLE-NGMLYYSTEGAEFL-KT 448 (461)
Q Consensus 419 ~~~~~~~~~~l~~~-~~~lYwtd~~~~~i-~~ 448 (461)
..|.+|+++ +|.||+++...+.| |+
T Consensus 208 -----~~pdgia~d~dG~l~va~~~~~~V~~i 234 (302)
T d2p4oa1 208 -----TNIDDFAFDVEGNLYGATHIYNSVVRI 234 (302)
T ss_dssp -----CCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred -----CCCcceEECCCCCEEEEEcCCCcEEEE
Confidence 113455554 46899999877655 44
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.2e-10 Score=107.11 Aligned_cols=247 Identities=10% Similarity=0.033 Sum_probs=156.2
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc--EEEEec-CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN--RIVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~--~~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
..|.+|++.+.++.||++....+.|.+.+++... .+.+.. .....|.+|+++|... +||+++. ....|.....+
T Consensus 37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~-~~~~v~~~~~~ 113 (333)
T d1ri6a_ 37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSY-NAGNVSVTRLE 113 (333)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEET-TTTEEEEEEEE
T ss_pred CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCC--EEeeccc-CCCceeeeccc
Confidence 4688999999999999999999999887765432 222222 2335699999999977 9999983 34566665555
Q ss_pred CCCcEEE--EecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC
Q psy17325 226 GSNRSTI--ISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG 303 (461)
Q Consensus 226 G~~~~~i--~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g 303 (461)
....... .......|.++++++..+.+|+++.....|. ++.....+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~--------------------------------~~~~~~~~ 161 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC--------------------------------LFTVSDDG 161 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE--------------------------------EEEECTTS
T ss_pred cccceecccccCCCccceEEEeeecceeeeccccccceee--------------------------------EEEeccCC
Confidence 4433222 2234567899999999999999887765432 11111111
Q ss_pred CceEEE---Ee--CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE---Ee-----eCCCCC
Q psy17325 304 SNASIL---VS--GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST---II-----STKIYW 369 (461)
Q Consensus 304 ~~~~~l---~~--~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~---l~-----~~~l~~ 369 (461)
...... .. ... |+.|++++.+..+|++.... +.. .+.....+...... +. ......
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~-~~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-SSV---------DVWELKDPHGNIECVQTLDMMPENFSDTRW 231 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-TEE---------EEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeecccc-Cce---------EEEeecccccceeeeeeeeeeecCCCcccc
Confidence 111111 11 111 89999999988888876551 111 12222222211111 11 134567
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
|.+++++++++++|.+....+.+..+.++.++...........+. .+..+++++++.+||++...++.|+.
T Consensus 232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~p~~~a~spDGk~l~va~~~~~~v~v 302 (333)
T d1ri6a_ 232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--------QPRGFNVDHSGKYLIAAGQKSHHISV 302 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--------SCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCC--------CeeEEEEeCCCCEEEEEECCCCeEEE
Confidence 889999988899999999888888888865555443332211111 12356777788899999988887754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.35 E-value=1.9e-10 Score=110.66 Aligned_cols=248 Identities=11% Similarity=0.059 Sum_probs=149.6
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC-CCcEEEEecC--
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE-NPRIERIGMD-- 225 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~-~~~I~~~~~d-- 225 (461)
..|..|+++..++.||.++...-..+.++.++..........-..|..+++++... .+|++.... ...+......
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~--~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTR--AIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCE--EEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCC--EEEEEEecCCCCEEEEeEccCC
Confidence 34677999999999999987544455566666554433322225699999999876 888865322 2444443332
Q ss_pred CCCc------------EEEEe---cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCC
Q psy17325 226 GSNR------------STIIS---TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGN 290 (461)
Q Consensus 226 G~~~------------~~i~~---~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~ 290 (461)
+... ..... ..-.+|.++++++.+++||++|...+.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~--------------------------- 170 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLW--------------------------- 170 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEE---------------------------
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEE---------------------------
Confidence 1111 11110 12235789999999999999998887643
Q ss_pred CcceeeeEEeCCCCceEE--EEe--CCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-
Q psy17325 291 GVPLKIGKANMDGSNASI--LVS--GQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS- 364 (461)
Q Consensus 291 ~~~~~I~~~~~~g~~~~~--l~~--~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~- 364 (461)
++....+|....+ +.. .+. |+.++++|.+..+|++... .+.|...+++......+..
T Consensus 171 -----~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~------------~~~V~v~~~~~~~~~~~~~~ 233 (365)
T d1jofa_ 171 -----THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp -----EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEE
T ss_pred -----EEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC------------CCEEEEEEecCCCceEEEEe
Confidence 2222223322111 111 122 9999999999999999877 6677777766543222110
Q ss_pred ------------------CCCCCceeEEEecCCCeEEEEcCCCC-----eEEEEEecCCCCeEEEEE-ccccceeeccCC
Q psy17325 365 ------------------TKIYWPNGLTLDIATRRVYFADSKLD-----FIDFCNYDGTGRQQVILI-DLMVEFTNDLMG 420 (461)
Q Consensus 365 ------------------~~l~~p~glaiD~~~~~ly~~d~~~~-----~I~~~~~~g~g~~~~~~~-~~~~~~~~~~~~ 420 (461)
....+|.+|++++++++||++....+ .|..++++.+|....... ...... |
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~-----G 308 (365)
T d1jofa_ 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-----G 308 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-----C
T ss_pred eeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC-----C
Confidence 11235778999999999999965433 487788755565432211 100000 0
Q ss_pred CCCcceEEEee-eCCEEEEEeCCCceeec
Q psy17325 421 DNGVPALALDL-ENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 421 ~~~~~~~~l~~-~~~~lYwtd~~~~~i~~ 448 (461)
..+..++++. .+.+||+++++++.|.+
T Consensus 309 -~~p~~i~~~p~~G~~l~va~~~s~~v~v 336 (365)
T d1jofa_ 309 -GHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp -TTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred -CCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence 1122344444 46789999999998754
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.33 E-value=1.5e-10 Score=107.96 Aligned_cols=192 Identities=13% Similarity=0.151 Sum_probs=129.2
Q ss_pred ceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeee
Q psy17325 194 PRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNV 273 (461)
Q Consensus 194 p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v 273 (461)
..|...|+..+ .|||+|. .+.+|+|.+.++...+.+.. -..|.+++.+. .++|+++...
T Consensus 20 gEgp~wd~~~~--~l~wvDi-~~~~I~r~d~~~g~~~~~~~--~~~~~~i~~~~-dg~l~va~~~--------------- 78 (295)
T d2ghsa1 20 GEGPTFDPASG--TAWWFNI-LERELHELHLASGRKTVHAL--PFMGSALAKIS-DSKQLIASDD--------------- 78 (295)
T ss_dssp EEEEEEETTTT--EEEEEEG-GGTEEEEEETTTTEEEEEEC--SSCEEEEEEEE-TTEEEEEETT---------------
T ss_pred eeCCeEECCCC--EEEEEEC-CCCEEEEEECCCCeEEEEEC--CCCcEEEEEec-CCCEEEEEeC---------------
Confidence 46888999988 9999994 56799999998866554432 23688999985 5778777542
Q ss_pred ccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC-----e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCC
Q psy17325 274 NYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ-----L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENP 347 (461)
Q Consensus 274 ~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~-----~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~ 347 (461)
.|.+.+++....+.+.... . |+++++|+ .|+||+++.. .......+
T Consensus 79 ---------------------gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~------~~~~~~~g 130 (295)
T d2ghsa1 79 ---------------------GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMG------RKAETGAG 130 (295)
T ss_dssp ---------------------EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEE------TTCCTTCE
T ss_pred ---------------------ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEecc------ccccccce
Confidence 2677777766666665421 1 89999997 5678887543 00111233
Q ss_pred ceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe----EEEEEccccceeeccCCCCC
Q psy17325 348 RIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ----QVILIDLMVEFTNDLMGDNG 423 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~----~~~~~~~~~~~~~~~~~~~~ 423 (461)
.+++.. +|+ .+.+. ..+..|+|+++++.++.|||+|+..++|+++++|.++.. +.++.......
T Consensus 131 ~l~~~~-~g~-~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~--------- 198 (295)
T d2ghsa1 131 SIYHVA-KGK-VTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK--------- 198 (295)
T ss_dssp EEEEEE-TTE-EEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---------
T ss_pred eEeeec-CCc-EEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc---------
Confidence 455553 342 33334 678899999999999999999999999999999654322 12222211100
Q ss_pred cceEEEeee-CCEEEEEeCCCcee
Q psy17325 424 VPALALDLE-NGMLYYSTEGAEFL 446 (461)
Q Consensus 424 ~~~~~l~~~-~~~lYwtd~~~~~i 446 (461)
..|-+++++ +|+||++.+..+.|
T Consensus 199 g~pdG~~vD~~GnlWva~~~~g~V 222 (295)
T d2ghsa1 199 GGMDGSVCDAEGHIWNARWGEGAV 222 (295)
T ss_dssp SEEEEEEECTTSCEEEEEETTTEE
T ss_pred ccccceEEcCCCCEEeeeeCCCce
Confidence 125677775 57999999888755
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.23 E-value=5.7e-09 Score=95.53 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=125.1
Q ss_pred eEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccce
Q psy17325 162 HIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPN 241 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~ 241 (461)
.+|+++..++.|.+.|+........+..+ ..|.+|+++|... +||++. ....+|...++........+. ....|.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~--~l~v~~-~~~~~i~v~d~~t~~~~~~~~-~~~~~~ 77 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGT--KVYVAN-AHSNDVSIIDTATNNVIATVP-AGSSPQ 77 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS--EEEEEE-GGGTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCC--EEEEEE-CCCCEEEEEECCCCceeeeee-cccccc
Confidence 47999999999999997655444334333 5699999999977 999998 445689998887543322222 245799
Q ss_pred eEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEE
Q psy17325 242 GLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALAL 320 (461)
Q Consensus 242 glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iav 320 (461)
++++++.+..+|++..... .+.+.+.........+.... |..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (301)
T d1l0qa2 78 GVAVSPDGKQVYVTNMASS----------------------------------TLSVIDTTSNTVAGTVKTGKSPLGLAL 123 (301)
T ss_dssp EEEECTTSSEEEEEETTTT----------------------------------EEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred ccccccccccccccccccc----------------------------------eeeecccccceeeeeccccccceEEEe
Confidence 9999998888888776653 24444444443333333333 889999
Q ss_pred eccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 321 DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 321 d~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
.|.+..++.+... ...+...+.........+ .....|..+++.+..+.+|++......+.....
T Consensus 124 ~~dg~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (301)
T d1l0qa2 124 SPDGKKLYVTNNG------------DKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (301)
T ss_dssp CTTSSEEEEEETT------------TTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ecCCCeeeeeecc------------ccceeeeeccccceeeec-ccCCCceEEEeeccccceeeecccccccccccc
Confidence 9988888877655 233333333222222222 345678999999899999999888777777776
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.2e-08 Score=94.84 Aligned_cols=238 Identities=11% Similarity=0.113 Sum_probs=144.5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcE-EE--EecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc--EEEEe
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNR-IV--LAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR--STIIS 234 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~-~~--l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~--~~i~~ 234 (461)
.+.+|++.+..++|.+.+++.... +. .+.. -..|.+||+.|... +||++. .....|...+++.... +.+..
T Consensus 3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~-~~~v~~la~spDG~--~L~v~~-~~d~~i~~~~i~~~~~~~~~~~~ 78 (333)
T d1ri6a_ 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDV-PGQVQPMVVSPDKR--YLYVGV-RPEFRVLAYRIAPDDGALTFAAE 78 (333)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSCCCCEEECTTSS--EEEEEE-TTTTEEEEEEECTTTCCEEEEEE
T ss_pred ceEEEEECCCCCcEEEEEEcCCCCeEEEEEEcC-CCCEeEEEEeCCCC--EEEEEE-CCCCeEEEEEEeCCCCcEEEeee
Confidence 457999999999999999764332 21 2222 26799999999977 999998 4456777777764332 22222
Q ss_pred -cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce--EEEEe
Q psy17325 235 -TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA--SILVS 311 (461)
Q Consensus 235 -~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~--~~l~~ 311 (461)
.....|.+|++++.++.||+++.....+ .....+.... .....
T Consensus 79 ~~~~~~p~~l~~spDg~~l~v~~~~~~~v----------------------------------~~~~~~~~~~~~~~~~~ 124 (333)
T d1ri6a_ 79 SALPGSLTHISTDHQGQFVFVGSYNAGNV----------------------------------SVTRLEDGLPVGVVDVV 124 (333)
T ss_dssp EECSSCCSEEEECTTSSEEEEEETTTTEE----------------------------------EEEEEETTEEEEEEEEE
T ss_pred cccCCCceEEEEcCCCCEEeecccCCCce----------------------------------eeeccccccceeccccc
Confidence 2335699999999999999998766432 2222222221 11111
Q ss_pred CC-e-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEE------EeeCCCCCceeEEEecCCCeEE
Q psy17325 312 GQ-L-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRST------IISTKIYWPNGLTLDIATRRVY 383 (461)
Q Consensus 312 ~~-~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~------l~~~~l~~p~glaiD~~~~~ly 383 (461)
.. . |++++++|.+..+|+++.. ...|...+........ ........|..|++++....+|
T Consensus 125 ~~~~~~~~v~~s~d~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 125 EGLDGCHSANISPDNRTLWVPALK------------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp CCCTTBCCCEECTTSSEEEEEEGG------------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCccceEEEeeecceeeeccccc------------cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEE
Confidence 22 2 8999999999988888766 4445444443322221 1123456789999999999999
Q ss_pred EEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceeec
Q psy17325 384 FADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLKT 448 (461)
Q Consensus 384 ~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~~ 448 (461)
++....+.......+............ ........+...+...+++.++.++|.+....+.+++
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~ 256 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTL-DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 256 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEE-ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeccccCceEEEeecccccceeeeeee-eeeecCCCccccceeEEEecccCceeeecccCCeEEE
Confidence 998888777766663233221111110 0000011111122245566667788888887776643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.14 E-value=3.3e-08 Score=94.57 Aligned_cols=208 Identities=13% Similarity=0.107 Sum_probs=128.1
Q ss_pred cceeeeeeeecCCeEEEEeCC--CCeEEEEe--------------CCCCcEEEEe---cCCCCCceeEEEcCCCCceEEE
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSR--LNRIEVCD--------------ENGTNRIVLA---KDNITQPRGMMLDPSPGTRWLF 209 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~--~~~I~~~~--------------~~G~~~~~l~---~~~~~~p~~ia~d~~~g~~~ly 209 (461)
..|..++++..++.+|++..+ .+.+.... ..+....... ...-.+|.+++++|..+ +||
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~--~l~ 160 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLY 160 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCC--EEE
Confidence 368889998888888887653 34444332 2222211111 12224688999999977 999
Q ss_pred EeecCCCCcEEEEecCCCCcEEEEe-----cccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEE
Q psy17325 210 WTDWGENPRIERIGMDGSNRSTIIS-----TKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYW 284 (461)
Q Consensus 210 ~td~~~~~~I~~~~~dG~~~~~i~~-----~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw 284 (461)
++|.+. .+|.+.+.+......... ..-..|.++++++..+.+|++....+.|.
T Consensus 161 v~d~g~-d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~--------------------- 218 (365)
T d1jofa_ 161 SADLTA-NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRIC--------------------- 218 (365)
T ss_dssp EEETTT-TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEE---------------------
T ss_pred EeeCCC-CEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEE---------------------
Confidence 999544 578777766443322221 12347999999999999999998876543
Q ss_pred EecCCCCcceeeeEEeCCCCceEEEE--------------------eCCe-eeeEEEeccCCeEEEeecCceeeEEEeec
Q psy17325 285 IDEGGNGVPLKIGKANMDGSNASILV--------------------SGQL-YEALALDLENGMLYYSTLKCTRWLFWTDW 343 (461)
Q Consensus 285 ~d~~~~~~~~~I~~~~~~g~~~~~l~--------------------~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~ 343 (461)
+.+.+......+. .... +..|+++|.+++||++.... +.
T Consensus 219 -------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~-------~~ 278 (365)
T d1jofa_ 219 -------------EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN-------KF 278 (365)
T ss_dssp -------------EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES-------ST
T ss_pred -------------EEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC-------CC
Confidence 3333322111000 0011 67899999999999986540 00
Q ss_pred CCCCceEEEe--ecCCCeEE--Ee--eCCCCCceeEEEec-CCCeEEEEcCCCCeEEEEEecCC
Q psy17325 344 GENPRIERIG--MDGSNRST--II--STKIYWPNGLTLDI-ATRRVYFADSKLDFIDFCNYDGT 400 (461)
Q Consensus 344 ~~~~~I~~~~--~dG~~~~~--l~--~~~l~~p~glaiD~-~~~~ly~~d~~~~~I~~~~~~g~ 400 (461)
.....|.... .+|...+. +. .....+|.+|++++ .+++||+++...+.|..++.+++
T Consensus 279 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 0111243333 33432222 11 13567899999987 56779999999999999998533
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.1e-11 Score=73.96 Aligned_cols=41 Identities=44% Similarity=1.130 Sum_probs=37.8
Q ss_pred CcceecCCcccCceeeccCCccccCCCCeeeeCCCCceeec
Q psy17325 71 MNECEQPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111 (461)
Q Consensus 71 ~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~ 111 (461)
||||..++.|+|.|.|++|+|.|.|++||.|..++++|+++
T Consensus 1 idEC~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~ai 41 (41)
T d1i0ua2 1 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41 (41)
T ss_dssp CCTTTTTTSCSSCEECSSSCCEECCCTTEEECTTTCCEEEC
T ss_pred CccCCCCCCCCCEeECCCCCEEeECCCCCeECCCCCccccC
Confidence 58998778899999999999999999999999999999864
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.92 E-value=3.6e-07 Score=89.57 Aligned_cols=183 Identities=14% Similarity=0.146 Sum_probs=104.7
Q ss_pred eEEEcCccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC--CC------CCceeEEEcCC---CCceEEEE
Q psy17325 142 DIVVSGLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD--NI------TQPRGMMLDPS---PGTRWLFW 210 (461)
Q Consensus 142 ~~~~~g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~--~~------~~p~~ia~d~~---~g~~~ly~ 210 (461)
.++..+|..|.+|++.+ .++||+++...++|.+++.++...+.+... .. .-.-+||+||. ++ ++|+
T Consensus 20 ~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~--~iYv 96 (450)
T d1crua_ 20 KVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP--YIYI 96 (450)
T ss_dssp EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC--EEEE
T ss_pred EEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCC--EEEE
Confidence 46788999999999986 578999998889999999776665554321 11 11247999984 45 8888
Q ss_pred eec--------C---CCCcEEEEecCCCCc-----EEEEec----ccccceeEEeeccCCeeEEecCCCceeeeccc--c
Q psy17325 211 TDW--------G---ENPRIERIGMDGSNR-----STIIST----KIYWPNGLTLDIATRRVYFADSKLDFIDCKSL--E 268 (461)
Q Consensus 211 td~--------~---~~~~I~~~~~dG~~~-----~~i~~~----~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~--~ 268 (461)
+-. . ....+.|...++... +.++.. ....-..|++++ .++||++-........... .
T Consensus 97 syt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~ 175 (450)
T d1crua_ 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLP 175 (450)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSC
T ss_pred EEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccccc
Confidence 631 0 012455666655432 222221 123445799987 5689998654321100000 0
Q ss_pred eeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce----------EEEEeCCe--eeeEEEeccCCeEEEeecC
Q psy17325 269 IKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA----------SILVSGQL--YEALALDLENGMLYYSTLK 333 (461)
Q Consensus 269 ~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~----------~~l~~~~~--p~~iavd~~~~~lY~t~~~ 333 (461)
........ ..-+..+......++|.|.++||+.. ..++..++ |.++++|| ++.||.+|.+
T Consensus 176 ~~~~~~~~----~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G 247 (450)
T d1crua_ 176 NQAQHTPT----QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQG 247 (450)
T ss_dssp CCTTCCCC----HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEEC
T ss_pred cccccCcc----cccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeecccc
Confidence 00000000 00000000001115788998888753 12444455 99999998 7889998875
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.89 E-value=1.6e-06 Score=81.44 Aligned_cols=162 Identities=12% Similarity=0.102 Sum_probs=101.5
Q ss_pred CCceeEEEcCC-CCceEEEEeec-CCCCcEEEEecCCCCcE-----EEEecccccceeEEeeccCCeeEEecCCCceeee
Q psy17325 192 TQPRGMMLDPS-PGTRWLFWTDW-GENPRIERIGMDGSNRS-----TIISTKIYWPNGLTLDIATRRVYFADSKLDFIDC 264 (461)
Q Consensus 192 ~~p~~ia~d~~-~g~~~ly~td~-~~~~~I~~~~~dG~~~~-----~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~ 264 (461)
..|.||.+-.. .|.-+||+.+. ....+|+...++-...+ .+....+..|+.|++.. .+.+|+++.....-..
T Consensus 97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~ 175 (340)
T d1v04a_ 97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPY 175 (340)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHH
T ss_pred eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChh
Confidence 47999998322 23337888874 24467877777533322 22334677899999985 6789999643211000
Q ss_pred cccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeec
Q psy17325 265 KSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDW 343 (461)
Q Consensus 265 ~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~ 343 (461)
. ..++.--+. ....+...+++..+++..... |+||+++|.++.||++++.
T Consensus 176 ~---------------~~~e~~~~~----~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~---------- 226 (340)
T d1v04a_ 176 L---------------KSWEMHLGL----AWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL---------- 226 (340)
T ss_dssp H---------------HHHHHHTTC----CCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG----------
T ss_pred h---------------hhhhHhhcC----CceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC----------
Confidence 0 000000000 123444556666666665433 9999999999999999988
Q ss_pred CCCCceEEEeecCCCeEEEe--eCCCCCceeEEEecCCCeEEEE
Q psy17325 344 GENPRIERIGMDGSNRSTII--STKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 344 ~~~~~I~~~~~dG~~~~~l~--~~~l~~p~glaiD~~~~~ly~~ 385 (461)
..+|.+.++++....... ..--..|..|.+|..++.+|++
T Consensus 227 --~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 227 --AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp --GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred --CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 788988888776533222 1233459999999888888887
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.2e-09 Score=69.21 Aligned_cols=42 Identities=40% Similarity=0.785 Sum_probs=36.4
Q ss_pred ecCcceecC-CcccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 69 QDMNECEQP-GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 69 ~d~~eC~~~-~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
.|||||..+ ..|++.|+|++|+|.|.|++||++..++++|.+
T Consensus 1 TDidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D 43 (43)
T d1uzka1 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43 (43)
T ss_dssp CCCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred CCccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence 378999843 457889999999999999999999999999964
|
| >d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.4e-09 Score=66.86 Aligned_cols=41 Identities=27% Similarity=0.601 Sum_probs=36.5
Q ss_pred CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecC
Q psy17325 30 LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM 71 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~ 71 (461)
++||. .+..|++.|.+++++|.|.|++||.|..++++|+++
T Consensus 1 idEC~-~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~ai 41 (41)
T d1i0ua2 1 IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41 (41)
T ss_dssp CCTTT-TTTSCSSCEECSSSCCEECCCTTEEECTTTCCEEEC
T ss_pred CccCC-CCCCCCCEeECCCCCEEeECCCCCeECCCCCccccC
Confidence 47886 467899999999999999999999999999999864
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.76 E-value=2.5e-07 Score=87.13 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=60.5
Q ss_pred eeeEEEeccCCeEEEeecCc--eeeE-EEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 315 YEALALDLENGMLYYSTLKC--TRWL-FWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~--~~~l-~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
|+.|++.. .+.+|+|+... ..++ .+...-..+.......++...++++ +++..|+||+++++++.||+++...++
T Consensus 152 pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~ 229 (340)
T d1v04a_ 152 VNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHK 229 (340)
T ss_dssp EEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCCCCe
Confidence 99999985 67899996430 0000 0000111233444555666666666 789999999999999999999999999
Q ss_pred EEEEEecCCCCe
Q psy17325 392 IDFCNYDGTGRQ 403 (461)
Q Consensus 392 I~~~~~~g~g~~ 403 (461)
|.++++++++..
T Consensus 230 i~~y~~~~~~~l 241 (340)
T d1v04a_ 230 IHVYEKHANWTL 241 (340)
T ss_dssp EEEEEECTTSCE
T ss_pred EEEEEeCCCccc
Confidence 999999655543
|
| >d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.4e-09 Score=67.73 Aligned_cols=42 Identities=36% Similarity=0.667 Sum_probs=37.6
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceec
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
+++||...+..|.+.|+|++++|.|.|++||.+..+++.|.|
T Consensus 2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D 43 (43)
T d1uzka1 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43 (43)
T ss_dssp CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence 578998777778889999999999999999999988999875
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=2e-09 Score=68.77 Aligned_cols=41 Identities=41% Similarity=0.981 Sum_probs=34.1
Q ss_pred Ccceec-C---CcccCceeeccCCccccCCCCeeeeCCCCceeec
Q psy17325 71 MNECEQ-P---GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAI 111 (461)
Q Consensus 71 ~~eC~~-~---~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~ 111 (461)
||||.. + ..|+|.|.|++|+|+|.|++||+|..++++|.++
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~i 45 (45)
T d1nt0a3 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45 (45)
T ss_dssp CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccccC
Confidence 578863 2 2489999999999999999999999999999753
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=2.9e-09 Score=68.02 Aligned_cols=40 Identities=40% Similarity=1.036 Sum_probs=34.9
Q ss_pred CcceecC-C---cccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 71 MNECEQP-G---YCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 71 ~~eC~~~-~---~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
||||... + .|++.|.|++|+|.|.|++||.|..++++|.+
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D 44 (45)
T d1szba2 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44 (45)
T ss_dssp CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence 5788732 2 58999999999999999999999999999975
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=2.9e-09 Score=66.49 Aligned_cols=39 Identities=41% Similarity=0.880 Sum_probs=34.3
Q ss_pred cceec--CCcccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 72 NECEQ--PGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 72 ~eC~~--~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
|||.. .+.|+|.|.|++|+|+|.|++||.|..++++|.+
T Consensus 1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~ 41 (42)
T d1nzia2 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 41 (42)
T ss_dssp CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence 57762 4689999999999999999999999999999964
|
| >d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3.5e-09 Score=67.63 Aligned_cols=41 Identities=32% Similarity=0.790 Sum_probs=35.7
Q ss_pred CCcccCCCC---CCCCCceeCCCCceEeCCCCCeecCCCCceec
Q psy17325 30 LAECKHKFG---LCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 30 ~~~C~~~~~---~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
++||...+. .|.+.|.+++++|.|.|++||.|..++++|+|
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D 44 (45)
T d1szba2 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44 (45)
T ss_dssp CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence 467776554 68899999999999999999999999999986
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=1e-09 Score=67.34 Aligned_cols=34 Identities=38% Similarity=0.942 Sum_probs=31.1
Q ss_pred cCcceecCCcccCceeeccCCccccCCCCeeeeC
Q psy17325 70 DMNECEQPGYCSQMCTNTKGSYICSCNEGYVLEY 103 (461)
Q Consensus 70 d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~ 103 (461)
|+|||..+..|++.|+|++|+|+|.|++||++..
T Consensus 1 DidEC~~~~~C~~~C~N~~Gsy~C~C~~Gy~l~g 34 (40)
T d1dx5i3 1 DIDECENGGFCSGVCHNLPGTFECICGPDSALAG 34 (40)
T ss_dssp ECCHHHHCSSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred CccccCCCcCccCEeeCCCCCeEeECCCCCeeCC
Confidence 6899987788999999999999999999999863
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=3.7e-09 Score=65.30 Aligned_cols=39 Identities=33% Similarity=0.721 Sum_probs=34.4
Q ss_pred CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 30 LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
.+||..+++.|++.|.+++++|.|.|++||.|. ++++|+
T Consensus 2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~ 40 (40)
T d3bpse1 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40 (40)
T ss_dssp SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence 578998899999999999999999999999985 677774
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=5.7e-09 Score=65.76 Aligned_cols=42 Identities=40% Similarity=0.910 Sum_probs=34.6
Q ss_pred ceecCcceecCC-cccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 67 TCQDMNECEQPG-YCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 67 ~C~d~~eC~~~~-~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
+|.|+|||..+. .|.+.|.|++|+|.|.|++||.+. +..|.+
T Consensus 1 sCvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~--g~~C~D 43 (43)
T d1emoa1 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVD 43 (43)
T ss_dssp CCCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEES--SSCEEE
T ss_pred CCcceeccCCcCCCCCCEeECCCCCeEeECCCCcccC--CCcccC
Confidence 488999998443 567899999999999999999984 566754
|
| >d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Mannose-binding protein associated serine protease 2, MASP2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=3.8e-09 Score=67.46 Aligned_cols=41 Identities=32% Similarity=0.712 Sum_probs=33.2
Q ss_pred CCcccCCC---CCCCCCceeCCCCceEeCCCCCeecCCCCceec
Q psy17325 30 LAECKHKF---GLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 30 ~~~C~~~~---~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
++||...+ ..|++.|.+++++|.|.|++||.|..++++|+.
T Consensus 1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~ 44 (45)
T d1nt0a3 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSA 44 (45)
T ss_dssp CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCcccc
Confidence 46787654 348899999999999999999999999999975
|
| >d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.6e-09 Score=64.49 Aligned_cols=38 Identities=37% Similarity=0.877 Sum_probs=33.7
Q ss_pred Cccee-cCCcccCceeeccCCccccCCCCeeeeCCCCcee
Q psy17325 71 MNECE-QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 71 ~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
+|||. .++.|+|.|.|++++|.|.|++||.|. ++++|+
T Consensus 2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~ 40 (40)
T d3bpse1 2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE 40 (40)
T ss_dssp SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence 58897 567899999999999999999999997 778883
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4.6e-09 Score=66.26 Aligned_cols=40 Identities=45% Similarity=1.085 Sum_probs=35.0
Q ss_pred ecCccee-cCCccc-CceeeccCCccccCCCCeeeeCCCCce
Q psy17325 69 QDMNECE-QPGYCS-QMCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 69 ~d~~eC~-~~~~C~-~~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
+|||||. .+..|. +.|+|++|+|.|.|++||.+..++++|
T Consensus 1 qDinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~C 42 (43)
T d1uzka2 1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42 (43)
T ss_dssp EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBB
T ss_pred CCcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCcc
Confidence 5899998 455664 799999999999999999999988887
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=7.3e-09 Score=68.88 Aligned_cols=42 Identities=43% Similarity=1.035 Sum_probs=34.7
Q ss_pred ecCcceecC---------CcccCceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 69 QDMNECEQP---------GYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 69 ~d~~eC~~~---------~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
.|||||... ..|+|.|+|++|+|.|.|++||+|..++++|++
T Consensus 2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~ 52 (53)
T d1apqa_ 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA 52 (53)
T ss_dssp CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence 367787621 236789999999999999999999999999964
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=4.7e-09 Score=65.84 Aligned_cols=39 Identities=41% Similarity=0.958 Sum_probs=34.1
Q ss_pred cCccee-cCCcccC-ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 70 DMNECE-QPGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 70 d~~eC~-~~~~C~~-~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
|+|||. .+..|.+ .|+|++|+|.|.|++||.+..++++|
T Consensus 1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~C 41 (42)
T d1lmja2 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41 (42)
T ss_dssp ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCcc
Confidence 689997 4567766 89999999999999999999888887
|
| >d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement C1S component species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.5e-08 Score=63.20 Aligned_cols=39 Identities=33% Similarity=0.692 Sum_probs=34.7
Q ss_pred CcccC-CCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 31 AECKH-KFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~-~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+||.. .+..|++.|.+++++|.|.|++||.|..++++|.
T Consensus 1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~ 40 (42)
T d1nzia2 1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 40 (42)
T ss_dssp CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeec
Confidence 57864 4578999999999999999999999999999985
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.53 E-value=7.7e-05 Score=67.93 Aligned_cols=144 Identities=13% Similarity=0.042 Sum_probs=86.0
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEec--CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec-----c
Q psy17325 164 YWLDSRLNRIEVCDENGTNRIVLAK--DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST-----K 236 (461)
Q Consensus 164 y~~d~~~~~I~~~~~~G~~~~~l~~--~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~-----~ 236 (461)
+++-...++|.+.|+........+. .....|.+|++.|... +||++. .....|...++.......-+.. .
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~--~l~v~~-~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR--IAYATV-NKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS--EEEEEE-TTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCC--EEEEEE-CCCCeEEEEECCCCcEEEEEecCCCccc
Confidence 4445556777777766544332222 2335699999999866 999987 4557899888875433222221 1
Q ss_pred cccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-e
Q psy17325 237 IYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL-Y 315 (461)
Q Consensus 237 ~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~-p 315 (461)
...|.++++.+..+.||++........ |...... ..+...+.........+.... |
T Consensus 81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~--------------------~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~ 137 (337)
T d1pbyb_ 81 VKSLFGAALSPDGKTLAIYESPVRLEL--------------------THFEVQP---TRVALYDAETLSRRKAFEAPRQI 137 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECS--------------------SCEEECC---CEEEEEETTTTEEEEEEECCSSC
T ss_pred ccceeeEEEcCCCcEEEEeecCCccee--------------------eeccccc---cceeeccccCCeEEEeccccCCc
Confidence 346789999999999998865432111 0000000 234444444333333333223 8
Q ss_pred eeEEEeccCCeEEEeecC
Q psy17325 316 EALALDLENGMLYYSTLK 333 (461)
Q Consensus 316 ~~iavd~~~~~lY~t~~~ 333 (461)
.++++++.+.+||.+...
T Consensus 138 ~~~~~s~dg~~l~~~~~~ 155 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLGRD 155 (337)
T ss_dssp CCEEECTTSSCEEEESSS
T ss_pred eEEEEcCCCCEEEEEcCC
Confidence 899999999999887543
|
| >d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.9e-08 Score=62.43 Aligned_cols=40 Identities=35% Similarity=0.553 Sum_probs=34.2
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceec
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
+++||...+..|.+.|.|++|+|.|.|++||.+ ++..|+|
T Consensus 4 DidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~--~g~~C~D 43 (43)
T d1emoa1 4 DMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43 (43)
T ss_dssp CCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE--SSSCEEE
T ss_pred ceeccCCcCCCCCCEeECCCCCeEeECCCCccc--CCCcccC
Confidence 678998777778889999999999999999987 4567764
|
| >d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=8.3e-09 Score=64.68 Aligned_cols=40 Identities=40% Similarity=0.855 Sum_probs=35.5
Q ss_pred CCCcccCCCCCCCC-CceeCCCCceEeCCCCCeecCCCCce
Q psy17325 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILSNDSVTC 68 (461)
Q Consensus 29 ~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C 68 (461)
|++||...+..|.+ .|.|++++|.|.|++||.+..+++.|
T Consensus 1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~C 41 (42)
T d1lmja2 1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41 (42)
T ss_dssp ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCC
T ss_pred CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCcc
Confidence 47899988888876 79999999999999999988877777
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.52 E-value=7.5e-05 Score=71.72 Aligned_cols=202 Identities=9% Similarity=-0.010 Sum_probs=122.6
Q ss_pred ceeeeeeeecCCe-EEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCC
Q psy17325 150 LVEGLAYDWIGGH-IYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSN 228 (461)
Q Consensus 150 ~p~~iavd~~~~~-ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~ 228 (461)
.|..+.+++..++ ++++...+++|.+.|+........+... ..|.+|++.|... +||.+. ....|...+++...
T Consensus 20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk--~l~~~~--~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGR--YLLVIG--RDARIDMIDLWAKE 94 (426)
T ss_dssp SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSC--EEEEEE--TTSEEEEEETTSSS
T ss_pred CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCC--EEEEEe--CCCCEEEEEccCCc
Confidence 4455555554444 5688888999999998765543334433 4699999999876 899887 23578888887554
Q ss_pred cEEEEe-cccccceeEEeec----cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCC
Q psy17325 229 RSTIIS-TKIYWPNGLTLDI----ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDG 303 (461)
Q Consensus 229 ~~~i~~-~~~~~P~glavD~----~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g 303 (461)
...+.. .....|.++++.. .+++||.+...... +...+...
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~----------------------------------v~i~d~~~ 140 (426)
T d1hzua2 95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ----------------------------------FAIMDGET 140 (426)
T ss_dssp CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE----------------------------------EEEEETTT
T ss_pred eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCe----------------------------------EEEEcCCc
Confidence 333221 2234577777754 56788887655533 22233332
Q ss_pred CceEEEEeCCe-------------eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee-cCCCeEEEeeCCCCC
Q psy17325 304 SNASILVSGQL-------------YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM-DGSNRSTIISTKIYW 369 (461)
Q Consensus 304 ~~~~~l~~~~~-------------p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~-dG~~~~~l~~~~l~~ 369 (461)
.....+..... +..++..+.+..++++... .+.|..... ++....+.....-..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECSSSSSCEEEEEECCSS
T ss_pred cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC------------CCeEEEEEeccccceeeEEeccCCc
Confidence 22222221111 3445555555555554444 445544443 333333322245667
Q ss_pred ceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCe
Q psy17325 370 PNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 370 p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~ 403 (461)
|.++++++.++++|++....+.+..++.. ++..
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~-~~~~ 241 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSK-DRRL 241 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETT-TTEE
T ss_pred cEeeeECCCCcEEEeeeecccceeeeecc-cccE
Confidence 99999999999999999999999999983 4443
|
| >d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.3e-09 Score=64.81 Aligned_cols=41 Identities=37% Similarity=0.784 Sum_probs=35.8
Q ss_pred CCCcccCCCCCCC-CCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 29 DLAECKHKFGLCS-NTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 29 ~~~~C~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
|++||...+..|. +.|+|++|+|.|.|++||.+..++++|+
T Consensus 2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce 43 (43)
T d1uzka2 2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD 43 (43)
T ss_dssp ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred CcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence 5789987777775 6799999999999999999988888884
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.51 E-value=3.1e-08 Score=64.79 Aligned_cols=39 Identities=33% Similarity=0.778 Sum_probs=32.4
Q ss_pred cCCcccCceeeccCCccccCCCCeeeeCCCCceeecccc
Q psy17325 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINHS 114 (461)
Q Consensus 76 ~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~~ 114 (461)
++++|+|+|.+++++|+|.|++||.|..|+++|.+++++
T Consensus 4 ~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~ 42 (51)
T d1kigl_ 4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence 467788888888888889999999888888888877654
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.6e-08 Score=64.10 Aligned_cols=38 Identities=32% Similarity=0.634 Sum_probs=32.8
Q ss_pred cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccc
Q psy17325 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 76 ~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
.+++|+|.|.+++++|+|+|+.||+|..|+++|.+.++
T Consensus 5 ~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~ 42 (50)
T d1autl2 5 DNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK 42 (50)
T ss_dssp GGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred CCCCcccEeecCCCCeEEECCCCCEECCCCCccccCCC
Confidence 45789999999999999999999999999999987654
|
| >d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.49 E-value=2.2e-08 Score=65.54 Aligned_cols=42 Identities=26% Similarity=0.634 Sum_probs=39.2
Q ss_pred ccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcce
Q psy17325 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
|..+++.|++.|++++++|.|.|++||.|..|+++|.++++|
T Consensus 1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~ 42 (51)
T d1kigl_ 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42 (51)
T ss_dssp CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence 667889999999999999999999999999999999998876
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.4e-08 Score=64.46 Aligned_cols=38 Identities=32% Similarity=0.801 Sum_probs=33.3
Q ss_pred cCCcccCceeeccCCccccCCCCeeeeCCCCceeeccc
Q psy17325 76 QPGYCSQMCTNTKGSYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 76 ~~~~C~~~C~~~~g~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
.+++|+|.|.+++++|+|.|+.||.|..|+++|.+.++
T Consensus 6 ~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~ 43 (51)
T d2p3ua1 6 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 43 (51)
T ss_dssp GGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred CCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCc
Confidence 46789999999999999999999999999999987654
|
| >d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Complement protease C1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=4.4e-08 Score=64.98 Aligned_cols=32 Identities=38% Similarity=0.823 Sum_probs=28.8
Q ss_pred CCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 38 GLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 38 ~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
..|++.|+|++|+|.|.|++||.|..++++|+
T Consensus 20 ~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~ 51 (53)
T d1apqa_ 20 PQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51 (53)
T ss_dssp CTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred CCccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence 34677899999999999999999999999986
|
| >d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4e-08 Score=63.83 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=38.1
Q ss_pred ccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcce
Q psy17325 33 CKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
|..+++.|++.|.+++++|+|.|++||.|..|+++|+...+.
T Consensus 2 C~~~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~~ 43 (50)
T d1autl2 2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43 (50)
T ss_dssp SSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSSS
T ss_pred CCCCCCCcccEeecCCCCeEEECCCCCEECCCCCccccCCCC
Confidence 667788999999999999999999999999999999877653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.46 E-value=7.3e-05 Score=72.24 Aligned_cols=185 Identities=9% Similarity=-0.048 Sum_probs=121.5
Q ss_pred eEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe-cccccc
Q psy17325 162 HIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWP 240 (461)
Q Consensus 162 ~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~-~~~~~P 240 (461)
.++++.+..++|.+.|.+.......+..+ ..|.++++.|... +||.+. ....|...+++......+.. .....|
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~--~l~~~s--~dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR--YLFVIG--RDGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC--EEEEEE--TTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCC--EEEEEc--CCCCEEEEEeeCCCceEEEEEecCCCC
Confidence 44689999999999998876655555444 4699999999977 999886 23578888886444322221 123467
Q ss_pred eeEEeec----cCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeC----
Q psy17325 241 NGLTLDI----ATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSG---- 312 (461)
Q Consensus 241 ~glavD~----~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~---- 312 (461)
.++++.+ .+++||.+...... |...+............
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~~~----------------------------------v~i~d~~t~~~~~~~~~~~~~ 153 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWPPQ----------------------------------YVIMDGETLEPKKIQSTRGMT 153 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTE----------------------------------EEEEETTTCCEEEEEECCEEC
T ss_pred CCeEEecccCCCCCEEEEEcCCCCe----------------------------------EEEEeCccccceeeeccCCcc
Confidence 7887654 56778887765543 33344333222221111
Q ss_pred ---------CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecC-CCeEEEeeCCCCCceeEEEecCCCeE
Q psy17325 313 ---------QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDG-SNRSTIISTKIYWPNGLTLDIATRRV 382 (461)
Q Consensus 313 ---------~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG-~~~~~l~~~~l~~p~glaiD~~~~~l 382 (461)
..+.+|+.++.+..+||+... .+.|...+... ....+.-...-..|.++++++++.++
T Consensus 154 ~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~------------~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~ 221 (432)
T d1qksa2 154 YDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 221 (432)
T ss_dssp TTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred ccceeccCCCceeEEEECCCCCEEEEEEcc------------CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEE
Confidence 114566777777777776555 66777776543 33222221334579999999998999
Q ss_pred EEEcCCCCeEEEEEe
Q psy17325 383 YFADSKLDFIDFCNY 397 (461)
Q Consensus 383 y~~d~~~~~I~~~~~ 397 (461)
|++....+.|..++.
T Consensus 222 ~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 222 ITAANARNKLVVIDT 236 (432)
T ss_dssp EEEEGGGTEEEEEET
T ss_pred EEeccccceEEEeec
Confidence 999999999999999
|
| >d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.8e-08 Score=64.22 Aligned_cols=43 Identities=23% Similarity=0.598 Sum_probs=39.1
Q ss_pred cccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecCcce
Q psy17325 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 32 ~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
.|..+++.|++.|.+++++|.|.|++||.|..|+++|++..++
T Consensus 2 ~C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~~ 44 (51)
T d2p3ua1 2 LCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 44 (51)
T ss_dssp GGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred ccCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCcc
Confidence 4778889999999999999999999999999999999987654
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=7.5e-08 Score=60.51 Aligned_cols=41 Identities=37% Similarity=0.927 Sum_probs=33.2
Q ss_pred ecCcceec-CCcccC-ceeeccCCccccCCCCeeee-CCCCcee
Q psy17325 69 QDMNECEQ-PGYCSQ-MCTNTKGSYICSCNEGYVLE-YDNHTCK 109 (461)
Q Consensus 69 ~d~~eC~~-~~~C~~-~C~~~~g~~~C~C~~g~~l~-~~~~~C~ 109 (461)
.|||||.. +..|.+ .|.|++|+|.|.|++||++. .+++.|.
T Consensus 1 TDidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~Cv 44 (44)
T d1lmja1 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44 (44)
T ss_dssp CCCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred CcccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcCC
Confidence 37899973 456765 89999999999999999986 4667773
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.40 E-value=2.6e-06 Score=82.30 Aligned_cols=189 Identities=11% Similarity=-0.049 Sum_probs=118.4
Q ss_pred eecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEcCCCCceEEEEeecCCCCcE----------------
Q psy17325 157 DWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGENPRI---------------- 219 (461)
Q Consensus 157 d~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I---------------- 219 (461)
.+.++.||++|..+++|.+++++......++. .....|.|+++.|... ++|++...+. .+
T Consensus 80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~--t~YV~~~~~~-~v~~~~dg~~~~~~~~~~ 156 (441)
T d1qnia2 80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK--TNYVFCNAEF-VIPQPNDGTDFSLDNSYT 156 (441)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSB--CCEEEEEECS-CEESSCSSSCCCGGGEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCC--EEEEEeccCC-cccccCcccccccccccc
Confidence 35588999999999999999998776555443 3346799999998866 8888763332 21
Q ss_pred --EEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeee
Q psy17325 220 --ERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIG 297 (461)
Q Consensus 220 --~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~ 297 (461)
..++........-+.. -..|.++++++.++.+|++...++.+...
T Consensus 157 ~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~i-------------------------------- 203 (441)
T d1qnia2 157 MFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDL-------------------------------- 203 (441)
T ss_dssp EEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSH--------------------------------
T ss_pred eEEeecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEE--------------------------------
Confidence 2222222111111111 13689999999999999988766432111
Q ss_pred EEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEec
Q psy17325 298 KANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDI 377 (461)
Q Consensus 298 ~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~ 377 (461)
..........+.....|.++++.+.++.+++... +.+.............+ ..-..|.|+++++
T Consensus 204 -d~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~--------------~v~vvd~~~~~~v~~~I-PvgksPhGv~vSP 267 (441)
T d1qnia2 204 -AGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS--------------KVPVVDGRGESEFTRYI-PVPKNPHGLNTSP 267 (441)
T ss_dssp -HHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC--------------CCCEEECSSSCSSEEEE-CCBSSCCCEEECT
T ss_pred -eccCcceEEEEEeCCccceEEEecCCCEEEeCCC--------------CcEEEEcccCCceEEEE-eCCCCccCceECC
Confidence 1111222222222223777777777776655322 22222222333333334 4456799999999
Q ss_pred CCCeEEEEcCCCCeEEEEEe
Q psy17325 378 ATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~ 397 (461)
++++||++....+.|..+++
T Consensus 268 DGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 268 DGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp TSCEEEEECTTSSBEEEEEG
T ss_pred CCCEEEEeCCcCCcEEEEEe
Confidence 99999999999999999997
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.39 E-value=0.00047 Score=62.43 Aligned_cols=238 Identities=8% Similarity=0.012 Sum_probs=133.2
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCc-EEEEecCC----CCCceeEEEcCCCCceEEEEeecC---------
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTN-RIVLAKDN----ITQPRGMMLDPSPGTRWLFWTDWG--------- 214 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~-~~~l~~~~----~~~p~~ia~d~~~g~~~ly~td~~--------- 214 (461)
..|.++++++.++.||++....+.|.+.++.... ...+-... ...|.++++.|..+ ++|++...
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~--~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFE 111 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEE
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc--EEEEeecCCcceeeecc
Confidence 4588999999888999999999999999976543 33332211 23578999999977 99988631
Q ss_pred -CCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccc-----------------
Q psy17325 215 -ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYS----------------- 276 (461)
Q Consensus 215 -~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~----------------- 276 (461)
....+...+.........+. ....|.++++++.++.+|.++.....+....++...++...
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred ccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeec
Confidence 11334444444322222222 24578999999999999998754333222222211111100
Q ss_pred -----eeeeEEEEEecCCC------CcceeeeEEeCCCCceEE-EEe-CCe-eeeEEEeccCCeEEEeecCceeeEEEee
Q psy17325 277 -----TIFRKLYWIDEGGN------GVPLKIGKANMDGSNASI-LVS-GQL-YEALALDLENGMLYYSTLKCTRWLFWTD 342 (461)
Q Consensus 277 -----~~~~~~yw~d~~~~------~~~~~I~~~~~~g~~~~~-l~~-~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d 342 (461)
......++...... .....+.+.+........ ... ... +..+++.+....+|..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 260 (337)
T d1pbyb_ 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYN---------- 260 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEES----------
T ss_pred cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEccc----------
Confidence 00111222211111 001234444443322222 111 122 777788887777766542
Q ss_pred cCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 343 WGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 343 ~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
.|...++........+ ..-..|.+|++++++++||++.. .+.|..++.. ++.....+
T Consensus 261 -----~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~~-t~~~v~~i 317 (337)
T d1pbyb_ 261 -----VLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAE-TLEKKGQV 317 (337)
T ss_dssp -----EEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESB-SSEEEEEETT-TCCEEEEE
T ss_pred -----cEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeC-CCcEEEEECC-CCcEEEEE
Confidence 3444444322222222 22356899999999999999865 4679999983 55554443
|
| >d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.5e-07 Score=59.15 Aligned_cols=40 Identities=30% Similarity=0.582 Sum_probs=33.6
Q ss_pred CCCcccCCCCCCCC-CceeCCCCceEeCCCCCeec-CCCCce
Q psy17325 29 DLAECKHKFGLCSN-TCHPTPLGALCTCPPGEILS-NDSVTC 68 (461)
Q Consensus 29 ~~~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~-~~~~~C 68 (461)
|++||...+..|.+ .|.|++|+|.|.|++||.+. .+++.|
T Consensus 2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~C 43 (44)
T d1lmja1 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43 (44)
T ss_dssp CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSE
T ss_pred cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcC
Confidence 57899888888876 79999999999999999874 456666
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.31 E-value=1.3e-05 Score=78.24 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=102.8
Q ss_pred EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec--------ccccceeEEeec---cCCee
Q psy17325 184 IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST--------KIYWPNGLTLDI---ATRRV 252 (461)
Q Consensus 184 ~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~--------~~~~P~glavD~---~~~~l 252 (461)
..++..++.+|++|++.|. | .||+++ ....+|.+++.++...+.+... +...-.|||+|+ .++.|
T Consensus 19 ~~~ia~~L~~P~~la~~pd-g--~llVte-r~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i 94 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPD-N--QIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (450)
T ss_dssp EEEEECCCSSEEEEEECTT-S--CEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred EEEEECCCCCceEEEEeCC-C--eEEEEE-ecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence 3444567899999999997 4 599998 4346899998776665554431 112345799987 36778
Q ss_pred EEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-----eEEEEeCC-----e-eeeEEEe
Q psy17325 253 YFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-----ASILVSGQ-----L-YEALALD 321 (461)
Q Consensus 253 y~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-----~~~l~~~~-----~-p~~iavd 321 (461)
|++......-. ++... .-...|.+...++.. .++++... . -..|+++
T Consensus 95 Yvsyt~~~~~~---------------------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fg 152 (450)
T d1crua_ 95 YISGTFKNPKS---------------------TDKEL-PNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG 152 (450)
T ss_dssp EEEEEEECTTC-----------------------CCS-CEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC
T ss_pred EEEEecCCCCC---------------------ccccc-ccceEEEeeecccccccccceEEEeecccccccccccceeEc
Confidence 87532110000 00000 000123333333222 22222211 1 5689999
Q ss_pred ccCCeEEEeecCce----eeEEEe---------------ecC-CCCceEEEeecCCCe----------EEEeeCCCCCce
Q psy17325 322 LENGMLYYSTLKCT----RWLFWT---------------DWG-ENPRIERIGMDGSNR----------STIISTKIYWPN 371 (461)
Q Consensus 322 ~~~~~lY~t~~~~~----~~l~~~---------------d~~-~~~~I~~~~~dG~~~----------~~l~~~~l~~p~ 371 (461)
+ .|+||++..... ...+.. +.. ..++|.|.+.||+.. ..+...++.+|.
T Consensus 153 p-DG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~ 231 (450)
T d1crua_ 153 P-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQ 231 (450)
T ss_dssp T-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEE
T ss_pred C-CCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEecccccc
Confidence 7 568999854310 000000 000 137899999998753 134458999999
Q ss_pred eEEEecCCCeEEEEcCCC
Q psy17325 372 GLTLDIATRRVYFADSKL 389 (461)
Q Consensus 372 glaiD~~~~~ly~~d~~~ 389 (461)
||++|+ +++||.+|-+-
T Consensus 232 g~~~~p-~g~l~~~e~G~ 248 (450)
T d1crua_ 232 GLAFTP-NGKLLQSEQGP 248 (450)
T ss_dssp EEEECT-TSCEEEEEECS
T ss_pred ceeecc-cceeeeccccc
Confidence 999996 79999998754
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.4e-07 Score=61.13 Aligned_cols=38 Identities=24% Similarity=0.683 Sum_probs=31.3
Q ss_pred ccee-cCCcccCceee------ccCCccccCCCCeeeeCCCCcee
Q psy17325 72 NECE-QPGYCSQMCTN------TKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 72 ~eC~-~~~~C~~~C~~------~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
+||. .+++|+|+|+. +.++|.|.|+.||+|..|+++|.
T Consensus 5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi 49 (50)
T d1ijqa2 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49 (50)
T ss_dssp SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence 4665 56789999974 45789999999999999999985
|
| >d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Low density lipoprotein (LDL) receptor, different EGF domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3e-07 Score=59.56 Aligned_cols=39 Identities=31% Similarity=0.690 Sum_probs=34.2
Q ss_pred CcccCCCCCCCCCceeCC------CCceEeCCCCCeecCCCCcee
Q psy17325 31 AECKHKFGLCSNTCHPTP------LGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~------~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+||..++++|++.|+..| ++|.|.|+.||.|..|+++|.
T Consensus 5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi 49 (50)
T d1ijqa2 5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49 (50)
T ss_dssp SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence 478888999999997544 689999999999999999985
|
| >d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=5.9e-08 Score=59.34 Aligned_cols=33 Identities=39% Similarity=0.883 Sum_probs=28.8
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeec
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILS 62 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~ 62 (461)
|++||.. +..|++.|.|++++|.|.|++||.+.
T Consensus 1 DidEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~l~ 33 (40)
T d1dx5i3 1 DIDECEN-GGFCSGVCHNLPGTFECICGPDSALA 33 (40)
T ss_dssp ECCHHHH-CSSCSSEEEECSSSEEEEECSSSSCE
T ss_pred CccccCC-CcCccCEeeCCCCCeEeECCCCCeeC
Confidence 4688964 57899999999999999999999874
|
| >d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2e-07 Score=57.58 Aligned_cols=26 Identities=50% Similarity=1.139 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++|||.+|+|||..||.||+|| ..|
T Consensus 16 ~~~CI~~~~~CDg~~DC~DgsDE-~~C 41 (41)
T d1f5ya2 16 VNRCIPQFWRCDGQVDCDNGSDE-QGC 41 (41)
T ss_dssp CCCEECGGGTTCSCCCSSSCTTT-TTC
T ss_pred CCCCccchhcCCCcCcCcCcccc-cCC
Confidence 46799999999999999999999 444
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3.8e-07 Score=60.74 Aligned_cols=38 Identities=34% Similarity=0.850 Sum_probs=33.0
Q ss_pred cCCcccCceeeccC-CccccCCCCeeeeCCCCceeeccc
Q psy17325 76 QPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAINH 113 (461)
Q Consensus 76 ~~~~C~~~C~~~~g-~~~C~C~~g~~l~~~~~~C~~~~~ 113 (461)
++++|+|+|.++++ +|+|.|++||.|..|+++|.++++
T Consensus 6 ~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~ 44 (57)
T d1rfnb_ 6 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 44 (57)
T ss_dssp GGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSS
T ss_pred CCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCC
Confidence 56789999999864 789999999999999999987654
|
| >d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.7e-07 Score=60.80 Aligned_cols=43 Identities=23% Similarity=0.594 Sum_probs=38.2
Q ss_pred cccCCCCCCCCCceeCCC-CceEeCCCCCeecCCCCceecCcce
Q psy17325 32 ECKHKFGLCSNTCHPTPL-GALCTCPPGEILSNDSVTCQDMNEC 74 (461)
Q Consensus 32 ~C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~d~~eC 74 (461)
+|..+++.|++.|.+.++ ++.|.|++||.|..|+++|+.+.++
T Consensus 2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f 45 (57)
T d1rfnb_ 2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45 (57)
T ss_dssp CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSSS
T ss_pred ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCCc
Confidence 577889999999999975 7899999999999999999987654
|
| >d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: soluble Tva ectodomain, sTva47 species: Quail (Coturnix coturnix) [TaxId: 9091]
Probab=98.20 E-value=1.7e-07 Score=58.37 Aligned_cols=26 Identities=42% Similarity=0.955 Sum_probs=23.4
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++|||.+|+|||..||+||+|| ..|
T Consensus 16 ~~~CIp~~~~CDg~~DC~DgsDE-~~C 41 (42)
T d1k7ba_ 16 HGECYPQDWLCDGHPDCDDGRDE-WGC 41 (42)
T ss_dssp CCCCEEGGGSSCSSCCSSSSTTT-GGG
T ss_pred CCcEechhhcCCCcCcCcCChhh-hcc
Confidence 45899999999999999999999 555
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.16 E-value=0.0018 Score=59.80 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=66.1
Q ss_pred eeeeeeeecCCeEEEEeCC---------CCeEEEEeCCCCcEEEEecC-------CCCCceeEEEcCCCCceEEEEeecC
Q psy17325 151 VEGLAYDWIGGHIYWLDSR---------LNRIEVCDENGTNRIVLAKD-------NITQPRGMMLDPSPGTRWLFWTDWG 214 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~---------~~~I~~~~~~G~~~~~l~~~-------~~~~p~~ia~d~~~g~~~ly~td~~ 214 (461)
+.++++.+.++.||++... .+.|.+.++........+.. ....|.++++.+... .+|+..+.
T Consensus 68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~~~v~~~~ 145 (373)
T d2madh_ 68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFA 145 (373)
T ss_pred CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC--cEEEEEEc
Confidence 4478999999999998754 35688888765443222211 123577888888766 77766644
Q ss_pred CCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCce
Q psy17325 215 ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261 (461)
Q Consensus 215 ~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~ 261 (461)
....+.......... + .....|.++++.+.++.+|++....+.
T Consensus 146 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~s~~g~~~~v~~~~dg~ 188 (373)
T d2madh_ 146 AGPAVGLVVQGGSSD--D--QLLSSPTCYHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred CCCceEEeeccCCeE--E--EEeccceeEEEecCCCcEEEEEcCCCe
Confidence 444444444443221 1 223468889998888888888776643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.14 E-value=0.00068 Score=61.52 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=68.3
Q ss_pred eeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE-EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEE
Q psy17325 153 GLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI-VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRST 231 (461)
Q Consensus 153 ~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~-~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~ 231 (461)
|+|+.. ++..+++-...++|.+.|+...... ++....-..|.+|++.|... +||++. .....|...++.......
T Consensus 1 g~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~--~l~v~~-~~~~~v~~~d~~t~~~~~ 76 (346)
T d1jmxb_ 1 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR--TAYVLN-NHYGDIYGIDLDTCKNTF 76 (346)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS--EEEEEE-TTTTEEEEEETTTTEEEE
T ss_pred CccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC--EEEEEE-CCCCcEEEEeCccCeeee
Confidence 355553 4455555566788999998755432 22222235699999999877 999998 455789998887543322
Q ss_pred EEec------ccccceeEEeeccCCeeEEecCC
Q psy17325 232 IIST------KIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 232 i~~~------~~~~P~glavD~~~~~ly~~d~~ 258 (461)
.+.. ....|.++++.+.+++||++...
T Consensus 77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~ 109 (346)
T d1jmxb_ 77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109 (346)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred eecccccccccCCceEEEEEecCCCEEEEEecC
Confidence 2221 12368899999999999998753
|
| >d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=4.7e-07 Score=56.26 Aligned_cols=27 Identities=41% Similarity=0.928 Sum_probs=24.3
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGCD 29 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C~ 29 (461)
+++||+.+|+|||..||+||+|| ..|.
T Consensus 14 ~~~CI~~~~~CDg~~DC~DgsDE-~~C~ 40 (42)
T d1cr8a_ 14 DGLCIPLRWRCDGDTDCMDSSDE-KSCE 40 (42)
T ss_dssp TCCEECGGGSSSSSCCSSSSTTT-TTCC
T ss_pred CCEEccchhcCCCcCcCCCcchh-ccCC
Confidence 57899999999999999999999 5663
|
| >d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3e-07 Score=56.19 Aligned_cols=26 Identities=38% Similarity=0.988 Sum_probs=23.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||.||+|| ..|
T Consensus 12 ~g~CI~~~~~CDg~~DC~DgsDE-~~C 37 (39)
T d2fcwb1 12 DGKCISRQFVCDSDRDCLDGSDE-ASC 37 (39)
T ss_dssp TSCEEEGGGTTSSSCCSTTCTTT-TTH
T ss_pred CCCEEcchhcCcCcCcCcCCchh-cCC
Confidence 68999999999999999999999 444
|
| >d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.4e-07 Score=55.79 Aligned_cols=26 Identities=35% Similarity=0.880 Sum_probs=23.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+++|||..||.||+|| ..|
T Consensus 12 ~g~CI~~~~~CDg~~DC~DgsDE-~~C 37 (39)
T d1f8za_ 12 DGNCIHGSRQCDREYDCKDMSDE-VGC 37 (39)
T ss_dssp SSCEEETTTSSSCCCCSTTSGGG-SSS
T ss_pred CCCeEChhhcCCCCCcCCCCchh-ccC
Confidence 57999999999999999999999 455
|
| >d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Very low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.8e-07 Score=55.23 Aligned_cols=25 Identities=40% Similarity=1.068 Sum_probs=22.7
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 3 DRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 3 ~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
.+||+.+|+|||..||+||+|| ..|
T Consensus 13 ~~CI~~~~~CDg~~DC~DgsDE-~~C 37 (39)
T d1v9u5_ 13 TQCIPVSWRCDGENDCDSGEDE-ENC 37 (39)
T ss_dssp SCCCCGGGSSSSSCCSTTSGGG-SSC
T ss_pred CCeeechhcCcCcccCCCCchh-ccC
Confidence 4699999999999999999999 556
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.07 E-value=0.00031 Score=64.64 Aligned_cols=245 Identities=11% Similarity=0.083 Sum_probs=136.7
Q ss_pred eeeeeeeecCCeEEEEeCC---------CCeEEEEeCCCCcEEEEec-C------CCCCceeEEEcCCCCceEEEEeecC
Q psy17325 151 VEGLAYDWIGGHIYWLDSR---------LNRIEVCDENGTNRIVLAK-D------NITQPRGMMLDPSPGTRWLFWTDWG 214 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~---------~~~I~~~~~~G~~~~~l~~-~------~~~~p~~ia~d~~~g~~~ly~td~~ 214 (461)
..++++.+.++.||+++.. .+.|.+.|+........+. . ....|.++++.+..+ ++|++++.
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~~~v~~~~ 126 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQFS 126 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEECS
T ss_pred CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC--eeEEecCC
Confidence 3478999999999998742 4678889876554332221 1 124689999999977 99998855
Q ss_pred CCCcEEEEecCCCCcEEEEec-------ccccceeEEeeccCCeeEEecCCCceeeecccceeee-----ecccee---e
Q psy17325 215 ENPRIERIGMDGSNRSTIIST-------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN-----VNYSTI---F 279 (461)
Q Consensus 215 ~~~~I~~~~~dG~~~~~i~~~-------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~-----v~~~~~---~ 279 (461)
....+...++........+.. ....+..+++......+++.......+.......... +..... .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (355)
T d2bbkh_ 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 206 (355)
T ss_dssp SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC
Confidence 545555555543322111111 1123445777777788888766554433221111000 000001 1
Q ss_pred eEEEEEecCCCCcceeeeEEeCCCCceEEEEeCC----------e----eeeEEEeccCCeEEEeecCceeeEEEeecCC
Q psy17325 280 RKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQ----------L----YEALALDLENGMLYYSTLKCTRWLFWTDWGE 345 (461)
Q Consensus 280 ~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~----------~----p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~ 345 (461)
+.+.|+.... ++++.++++....++.... . +..+++.+.+..+||+......+ .....
T Consensus 207 ~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~ 278 (355)
T d2bbkh_ 207 GRLVWPTYTG-----KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW---RHKTA 278 (355)
T ss_dssp TEEEEEBTTS-----EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT---CTTSC
T ss_pred CeEEEecCCC-----eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce---eecCC
Confidence 2455554433 5777777766544432111 1 34588888888888865430000 00001
Q ss_pred CCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCe-EEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 346 NPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRR-VYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 346 ~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~-ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
...|...++........+ ..-..|.+|++.++++. ||++....+.|..+|+ .+|+....+
T Consensus 279 ~~~v~v~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~-~tg~~~~~i 339 (355)
T d2bbkh_ 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA-ESGEELRSV 339 (355)
T ss_dssp EEEEEEEETTTCCEEEEE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEET-TTCCEEEEE
T ss_pred CCeEEEEeCCCCcEEEEe-cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC-CCCCEEEEE
Confidence 234555554432222112 12245889999877654 6778777899999998 367664444
|
| >d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=4.2e-07 Score=54.72 Aligned_cols=26 Identities=35% Similarity=0.905 Sum_probs=23.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+++|||..||.||+|| ..|
T Consensus 11 ~g~Ci~~~~~CDg~~DC~dgsDE-~~C 36 (37)
T d1ajja_ 11 SGECIHSSWRCDGGPDCKDKSDE-ENC 36 (37)
T ss_dssp TSCEECGGGTTSSSCCSTTCGGG-TTC
T ss_pred CCCEECchhcCCCCCcCCCCchh-hcc
Confidence 68999999999999999999999 455
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.07 E-value=0.00016 Score=69.68 Aligned_cols=181 Identities=10% Similarity=-0.020 Sum_probs=112.3
Q ss_pred EEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEe
Q psy17325 207 WLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWID 286 (461)
Q Consensus 207 ~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d 286 (461)
.++++. ....+|...+++.......+..+ ..|.++++.+.+++||.+....
T Consensus 33 ~~~v~~-~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg--------------------------- 83 (432)
T d1qksa2 33 LFSVTL-RDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDG--------------------------- 83 (432)
T ss_dssp EEEEEE-TTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTS---------------------------
T ss_pred EEEEEE-cCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCC---------------------------
Confidence 456666 56678988888866554445444 4799999999999999886532
Q ss_pred cCCCCcceeeeEEeCCCCceEEE--EeCCe-eeeEEEec----cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCe
Q psy17325 287 EGGNGVPLKIGKANMDGSNASIL--VSGQL-YEALALDL----ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNR 359 (461)
Q Consensus 287 ~~~~~~~~~I~~~~~~g~~~~~l--~~~~~-p~~iavd~----~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~ 359 (461)
.|.+.+++......+ +.... |+++++.+ .+..||++... .+.|...+......
T Consensus 84 --------~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~------------~~~v~i~d~~t~~~ 143 (432)
T d1qksa2 84 --------KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW------------PPQYVIMDGETLEP 143 (432)
T ss_dssp --------EEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------------TTEEEEEETTTCCE
T ss_pred --------CEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC------------CCeEEEEeCccccc
Confidence 356666654333222 22222 88887764 57788988766 34444444332222
Q ss_pred EEEee-----------CCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEE-ccccceeeccCCCCCcceE
Q psy17325 360 STIIS-----------TKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILI-DLMVEFTNDLMGDNGVPAL 427 (461)
Q Consensus 360 ~~l~~-----------~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 427 (461)
..... ..-..+.+++.++.+..+||+-...+.|..++.. ++....+.. ..... +..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~-~~~~~~~~~i~~g~~----------~~~~ 212 (432)
T d1qksa2 144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT-DLNNLKTTEISAERF----------LHDG 212 (432)
T ss_dssp EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT-CSSEEEEEEEECCSS----------EEEE
T ss_pred eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc-CCCcceEEEEcccCc----------cccc
Confidence 21110 1223456788888888999998889999999983 344332221 11111 2256
Q ss_pred EEeeeCCEEEEEeCCCceee
Q psy17325 428 ALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 428 ~l~~~~~~lYwtd~~~~~i~ 447 (461)
+++.++.++|.+....+.+.
T Consensus 213 ~~spdg~~~~va~~~~~~v~ 232 (432)
T d1qksa2 213 GLDGSHRYFITAANARNKLV 232 (432)
T ss_dssp EECTTSCEEEEEEGGGTEEE
T ss_pred eECCCCCEEEEeccccceEE
Confidence 66677778888887777664
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.05 E-value=3.3e-06 Score=81.51 Aligned_cols=209 Identities=13% Similarity=0.083 Sum_probs=111.6
Q ss_pred CceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEe-cccccceeEEeeccCCeeEEecCCCceeeecc-ccee
Q psy17325 193 QPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKLDFIDCKS-LEIK 270 (461)
Q Consensus 193 ~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~-~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~-~~~~ 270 (461)
+|.....+....+++||++| ..+.+|.+++++--....++. .....|.|+++.+..+++|++......+.... +.
T Consensus 71 hP~~s~t~gtpDGr~lfV~d-~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~-- 147 (441)
T d1qnia2 71 HPHISMTDGRYDGKYLFIND-KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT-- 147 (441)
T ss_dssp CCEEEEETTEEEEEEEEEEE-TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS--
T ss_pred CCCcceecccCCCCEEEEEc-CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc--
Confidence 45444443211144999999 567899999998654444443 34568999999998999998865543332110 00
Q ss_pred eeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce-EEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCce
Q psy17325 271 TNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA-SILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRI 349 (461)
Q Consensus 271 ~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~-~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I 349 (461)
. |.+... ...+...+...... ..+.....|.+++++|.++.+|++... ...+
T Consensus 148 -~-----------~~~~~~---~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~n------------se~~ 200 (441)
T d1qnia2 148 -D-----------FSLDNS---YTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYN------------SERA 200 (441)
T ss_dssp -C-----------CCGGGE---EEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESC------------TTCC
T ss_pred -c-----------cccccc---cceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecC------------CCce
Confidence 0 000000 01122233322211 112222239999999999988888655 2221
Q ss_pred EE-EeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEE
Q psy17325 350 ER-IGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALA 428 (461)
Q Consensus 350 ~~-~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (461)
.. ..+.......+. -..+|.++++-+.++.+++.+.+ +..++..........+-. + ..+.+++
T Consensus 201 ~~id~~t~~~~d~i~--v~n~p~~~~~~~dGk~~~v~~~~---v~vvd~~~~~~v~~~IPv---g--------ksPhGv~ 264 (441)
T d1qnia2 201 VDLAGTMRNDRDWVV--VFNVERIAAAVKAGNFKTIGDSK---VPVVDGRGESEFTRYIPV---P--------KNPHGLN 264 (441)
T ss_dssp SSHHHHTCSSBCEEE--EEEHHHHHHHHHTTCCBCCTTCC---CCEEECSSSCSSEEEECC---B--------SSCCCEE
T ss_pred EEEeccCcceEEEEE--eCCccceEEEecCCCEEEeCCCC---cEEEEcccCCceEEEEeC---C--------CCccCce
Confidence 11 112222222222 23467777777666666654322 223332111111112211 1 1245788
Q ss_pred EeeeCCEEEEEeCCCceee
Q psy17325 429 LDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 429 l~~~~~~lYwtd~~~~~i~ 447 (461)
++.++.++|++...++++.
T Consensus 265 vSPDGkyl~~~~~~~~tvs 283 (441)
T d1qnia2 265 TSPDGKYFIANGKLSPTVS 283 (441)
T ss_dssp ECTTSCEEEEECTTSSBEE
T ss_pred ECCCCCEEEEeCCcCCcEE
Confidence 8889999999999888774
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.2e-06 Score=57.27 Aligned_cols=37 Identities=35% Similarity=0.805 Sum_probs=31.8
Q ss_pred cCCcccCceeeccC-CccccCCCCeeeeCCCCceeecc
Q psy17325 76 QPGYCSQMCTNTKG-SYICSCNEGYVLEYDNHTCKAIN 112 (461)
Q Consensus 76 ~~~~C~~~C~~~~g-~~~C~C~~g~~l~~~~~~C~~~~ 112 (461)
++++|+|+|.++++ +|+|.|+.||.|..|+++|.+..
T Consensus 5 ~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~ 42 (53)
T d2bz6l1 5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV 42 (53)
T ss_dssp GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECS
T ss_pred CCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCC
Confidence 46789999999986 47899999999999999997653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.03 E-value=0.0021 Score=58.71 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=62.6
Q ss_pred eecCCeEEEEeCC----CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC--------CCcEEEEec
Q psy17325 157 DWIGGHIYWLDSR----LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE--------NPRIERIGM 224 (461)
Q Consensus 157 d~~~~~ly~~d~~----~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~--------~~~I~~~~~ 224 (461)
.+.+.++|+++.. .+.|.+.|.+.......+..+ ..| ++++.|... +||+++... ...|...++
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~-~~a~SpDg~--~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-NPVVADDGS--FIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCC-ceEEcCCCC--EEEEEeCCCccccccCCCCEEEEEEC
Confidence 3457888888743 456888887654433223322 224 799999977 999886211 135666666
Q ss_pred CCCCcEEEEec-------ccccceeEEeeccCCeeEEecCCC
Q psy17325 225 DGSNRSTIIST-------KIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 225 dG~~~~~i~~~-------~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
........+.. ....|.++++.+.++++|+++...
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~ 127 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127 (355)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence 64433222211 123688999999999999987654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.01 E-value=0.00034 Score=65.34 Aligned_cols=238 Identities=10% Similarity=-0.000 Sum_probs=125.0
Q ss_pred eeeeeeecCCeEEEEeC---------CCCeEEEEeCCCCcEEEEec--C-----CCCCceeEEEcCCCCceEEEEeecCC
Q psy17325 152 EGLAYDWIGGHIYWLDS---------RLNRIEVCDENGTNRIVLAK--D-----NITQPRGMMLDPSPGTRWLFWTDWGE 215 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~---------~~~~I~~~~~~G~~~~~l~~--~-----~~~~p~~ia~d~~~g~~~ly~td~~~ 215 (461)
.++++.+.++.||++.. ..+.|.+.|.........+. . ....|.++++.|... +||+++. .
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk--~l~va~~-~ 144 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA--CLLFFLF-G 144 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS--CEEEEEC-S
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC--EEEEEeC-C
Confidence 36888888899999873 24569999976554332221 1 124588999999977 9999983 4
Q ss_pred CCcEEEEecCCCCcEEEEeccc-------ccceeEEeeccCCeeEEecCCCceeeecccceeee-ecc--cee----eeE
Q psy17325 216 NPRIERIGMDGSNRSTIISTKI-------YWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTN-VNY--STI----FRK 281 (461)
Q Consensus 216 ~~~I~~~~~dG~~~~~i~~~~~-------~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~-v~~--~~~----~~~ 281 (461)
...|...++........+...- ..+..+++...+..++|.................. .+. ..+ ...
T Consensus 145 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 224 (368)
T d1mdah_ 145 SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM 224 (368)
T ss_dssp SSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred CCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence 4678888877654433332100 11122333333333333322111100000000000 000 000 123
Q ss_pred EEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--------------eeeEEEeccCCeEEEeecCceeeEEEeecCCCC
Q psy17325 282 LYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--------------YEALALDLENGMLYYSTLKCTRWLFWTDWGENP 347 (461)
Q Consensus 282 ~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--------------p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~ 347 (461)
++|+..+. +++.+.++....++..... +..+++.+..+.+|++... .... -.....
T Consensus 225 ~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~-~~~~---~~~~~~ 294 (368)
T d1mdah_ 225 LVWAVASS------ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE-HSRS---CLAAAE 294 (368)
T ss_dssp EEECBSSC------CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE-CSSC---TTSCEE
T ss_pred EEEecCCC------EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecC-CCce---eecCCc
Confidence 44444433 5666666554444332111 4568999999999987543 0000 000012
Q ss_pred ceEEEeecCCCeEEEeeCCCCCceeEEEecCCC-eEEEEcCCCCeEEEEEecCCCCeE
Q psy17325 348 RIERIGMDGSNRSTIISTKIYWPNGLTLDIATR-RVYFADSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 348 ~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~-~ly~~d~~~~~I~~~~~~g~g~~~ 404 (461)
+|...+.....+...+ ..-..|.+|++.++++ .||.+....+.|..+|. .+|+..
T Consensus 295 ~v~v~D~~t~~~~~~~-~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~-~tgk~~ 350 (368)
T d1mdah_ 295 NTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA-ASDQDQ 350 (368)
T ss_dssp EEEEEESSSCCEEECC-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEES-SSCEEE
T ss_pred eEEEEECCCCcEeEEe-cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC-CCCCEE
Confidence 3544444332222111 1224688999987765 58999998999999998 356543
|
| >d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l3 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=98.01 E-value=2e-07 Score=57.71 Aligned_cols=26 Identities=46% Similarity=1.045 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEGPGC 28 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~~~C 28 (461)
+++||+.+|+|||..||+||+|| ..|
T Consensus 14 ~~~CI~~~~~CDg~~DC~dgsDE-~~C 39 (41)
T d2gtlo2 14 DPQCISKLFVCDGHNDCRNGEDE-KDC 39 (41)
T ss_dssp SCCEEEGGGTTSSSCCSSSCHHH-HCC
T ss_pred CCcEeechhccCCCCcCCCCchh-ccC
Confidence 46899999999999999999999 455
|
| >d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.2e-06 Score=54.90 Aligned_cols=24 Identities=38% Similarity=0.808 Sum_probs=22.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+|+|||..||.||+||.
T Consensus 16 ~g~CI~~~~~CDg~~DC~DgsDE~ 39 (44)
T d1xfea2 16 SGECITLDKVCNMARDCRDWSDEP 39 (44)
T ss_dssp TSCEEESTTTTCSSCCCSSCSSSC
T ss_pred CCCeEchhhcCCCCCCCCCCCccC
Confidence 689999999999999999999995
|
| >d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Extracellular hemoglobin linker l2 subunit species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=97.96 E-value=1.2e-06 Score=53.97 Aligned_cols=24 Identities=42% Similarity=0.879 Sum_probs=22.3
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+|+|||..||+|||||.
T Consensus 13 ~g~Ci~~~~~CDg~~DC~DgsDE~ 36 (41)
T d2gtln2 13 EQECISDLLVCDGHKDCHNAHDED 36 (41)
T ss_dssp SCCEEETTTTTSSSCCSTTCTTSC
T ss_pred CCCeechHHcCCCCccCCCCCccc
Confidence 468999999999999999999994
|
| >d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Coagulation factor VIIa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.9e-06 Score=56.30 Aligned_cols=41 Identities=29% Similarity=0.574 Sum_probs=35.5
Q ss_pred ccCCCCCCCCCceeCCCC-ceEeCCCCCeecCCCCceecCcc
Q psy17325 33 CKHKFGLCSNTCHPTPLG-ALCTCPPGEILSNDSVTCQDMNE 73 (461)
Q Consensus 33 C~~~~~~C~~~C~~~~~~-~~C~C~~G~~l~~~~~~C~d~~e 73 (461)
|..++++|++.|.+++++ +.|.|+.||.|..|+++|....+
T Consensus 2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~ 43 (53)
T d2bz6l1 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 43 (53)
T ss_dssp TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSS
T ss_pred CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCCc
Confidence 667889999999999875 78999999999999999986543
|
| >d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Hemoglobin linker chain l1 species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]
Probab=97.94 E-value=9.6e-07 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.916 Sum_probs=22.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+|+|||..||+||+||.
T Consensus 14 ~~~CI~~~~~CDg~~DC~DgsDE~ 37 (42)
T d2gtlm2 14 VPECIHDLLFCDGEKDCRDGSDED 37 (42)
T ss_dssp SCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCCEechhhcCCCCccCCCCCcCC
Confidence 368999999999999999999994
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.93 E-value=0.00053 Score=65.49 Aligned_cols=205 Identities=9% Similarity=0.017 Sum_probs=113.6
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKT 271 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~ 271 (461)
..|..++++.... ..++++. ....+|...++........+..+ ..|.+|++.+.+++||.+....
T Consensus 19 ~~p~~~~~~~d~~-~~~~V~~-~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~------------ 83 (426)
T d1hzua2 19 DRPKKQLNDLDLP-NLFSVTL-RDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDA------------ 83 (426)
T ss_dssp GSCSSCCSCCCGG-GEEEEEE-TTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTS------------
T ss_pred cCCCcccccCCCC-eEEEEEE-cCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCC------------
Confidence 3455555554422 1556666 56689999988754443333333 4699999999999999887542
Q ss_pred eeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEE--eCCe-eeeEEEec----cCCeEEEeecCceeeEEEeecC
Q psy17325 272 NVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILV--SGQL-YEALALDL----ENGMLYYSTLKCTRWLFWTDWG 344 (461)
Q Consensus 272 ~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~--~~~~-p~~iavd~----~~~~lY~t~~~~~~~l~~~d~~ 344 (461)
.|.+.+++......+. .... |+++++.+ .+.+||.+........+| |..
T Consensus 84 -----------------------~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~-d~~ 139 (426)
T d1hzua2 84 -----------------------RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM-DGE 139 (426)
T ss_dssp -----------------------EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE-ETT
T ss_pred -----------------------CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE-cCC
Confidence 4666666654433322 2222 77887764 577888876552223333 221
Q ss_pred CCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeEEE-EEccccceeeccCCCCC
Q psy17325 345 ENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQVI-LIDLMVEFTNDLMGDNG 423 (461)
Q Consensus 345 ~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~~~-~~~~~~~~~~~~~~~~~ 423 (461)
....+......+..........-..+..++..+....++++....+.|..++.. ++....+ .......
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~---------- 208 (426)
T d1hzua2 140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK-DIDNLTVTSIGAAPF---------- 208 (426)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS-SSSSCEEEEEECCSS----------
T ss_pred ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec-cccceeeEEeccCCc----------
Confidence 111111111111110000001223456677777888889998888888888773 3332221 1111111
Q ss_pred cceEEEeeeCCEEEEEeCCCcee
Q psy17325 424 VPALALDLENGMLYYSTEGAEFL 446 (461)
Q Consensus 424 ~~~~~l~~~~~~lYwtd~~~~~i 446 (461)
+..++++..+.++|++....+.+
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~ 231 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKV 231 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEE
T ss_pred cEeeeECCCCcEEEeeeecccce
Confidence 12455555677888888777655
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.92 E-value=0.0066 Score=55.73 Aligned_cols=222 Identities=11% Similarity=0.029 Sum_probs=114.5
Q ss_pred cceeeeeeeecCCeEEEEeCC-CCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSR-LNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~-~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
..|.++++.+.++.+|+.... .+.+...+......... ...|.++++.+... .+|++. .....+...+.++.
T Consensus 125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~--~~~v~~-~~dg~~~~~~~~~~ 197 (373)
T d2madh_ 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAP--STFYLL-CAQGGLAKTDHAGG 197 (373)
T ss_pred cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCC--cEEEEE-cCCCeEEEEEcCCc
Confidence 357788888888887776543 34555555554332221 23478889988866 888887 44467777776654
Q ss_pred CcEEEEec------ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeC
Q psy17325 228 NRSTIIST------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANM 301 (461)
Q Consensus 228 ~~~~i~~~------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~ 301 (461)
........ ....+..++.+.....++..+.. .+ +-.+.... ........
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v--------------------~~~~~~~~---~~~~~~~~ 252 (373)
T d2madh_ 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG--KI--------------------LQADISAA---GATNKAPI 252 (373)
T ss_pred eeeEEEeeeccccCccceeeeEEECCCceEEEecCCc--eE--------------------EEEEcCCC---eEEEEEee
Confidence 43222211 11123344444333233322221 11 11111110 00111111
Q ss_pred CCCc--eE-EEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecC
Q psy17325 302 DGSN--AS-ILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIA 378 (461)
Q Consensus 302 ~g~~--~~-~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~ 378 (461)
++.. .. +......+..+++.+.+..+|++... ...+. .......|...+.........+ ..-..|.+|++.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~--~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spD 328 (373)
T d2madh_ 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE-QSAWK--LHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQD 328 (373)
T ss_pred ccccCcEEeeeeccCcceeeEEecCCCeEEEecCC-CceEE--eecCCCeEEEEECCCCcEEEEe-cCCCCeeEEEECCC
Confidence 1111 11 11111115667888888888876554 11111 1122345666665333333223 33467999999877
Q ss_pred CCe-EEEEcCCCCeEEEEEecCCCCeEEEE
Q psy17325 379 TRR-VYFADSKLDFIDFCNYDGTGRQQVIL 407 (461)
Q Consensus 379 ~~~-ly~~d~~~~~I~~~~~~g~g~~~~~~ 407 (461)
+.+ ||++....+.|...|+ .+|+....+
T Consensus 329 G~~~l~vt~~~d~~v~v~D~-~tg~~~~~~ 357 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDA-GAGDQDQST 357 (373)
T ss_pred CCEEEEEEeCCCCeEEEEEC-CCCCEEEEE
Confidence 665 6778888899999999 367765444
|
| >d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=7.6e-07 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.776 Sum_probs=22.7
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+|+||+..|+|||..||.||+||.
T Consensus 12 ~g~CI~~~~~CDg~~DC~DgsDE~ 35 (39)
T d2fcwb2 12 SSTCIPQLWACDNDPDCEDGSDEW 35 (39)
T ss_dssp TSCEEEGGGTTSSSCCSTTCGGGC
T ss_pred CCCeEChhhcCCCCCCCCCCCcCC
Confidence 689999999999999999999994
|
| >d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.4e-06 Score=54.75 Aligned_cols=24 Identities=38% Similarity=1.028 Sum_probs=22.5
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++|||.+++|||..||.||+||.
T Consensus 17 ~g~CI~~~~~CDg~~DC~DgsDE~ 40 (44)
T d1f5ya1 17 DGKCISYKWVCDGSAECQDGSDES 40 (44)
T ss_dssp SSCEECTTTTTSSSCSSSSSGGGT
T ss_pred CCCeEChhHcCCCcCcCCCCCcCC
Confidence 579999999999999999999993
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=0.0036 Score=54.93 Aligned_cols=190 Identities=11% Similarity=0.086 Sum_probs=103.6
Q ss_pred CeEEEEeCCCC----eEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEE-EEeecCCCCcEEEEecCCCCcEEEEec
Q psy17325 161 GHIYWLDSRLN----RIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWL-FWTDWGENPRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 161 ~~ly~~d~~~~----~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~l-y~td~~~~~~I~~~~~dG~~~~~i~~~ 235 (461)
+-.|+++.+.+ +|.+++.+|+..+.|.... ......+.-|... +| |+++......++...+++...+.+...
T Consensus 5 ~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk--~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (269)
T d2hqsa1 5 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVRQVASF 81 (269)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-SCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEEEEECC
T ss_pred eEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-CceeeeEECCCCC--EEEEEEeeccCcceeeeecccCceeEEeee
Confidence 33466666533 5889999999988887543 3345668888755 66 454434446788888888777655443
Q ss_pred ccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 236 KIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 236 ~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
..........+.+..|.+.-...+.. .+..................
T Consensus 82 -~~~~~~~~~spdg~~i~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 128 (269)
T d2hqsa1 82 -PRHNGAPAFSPDGSKLAFALSKTGSL--------------------------------NLYVMDLASGQIRQVTDGRSN 128 (269)
T ss_dssp -SSCEEEEEECTTSSEEEEEECTTSSC--------------------------------EEEEEETTTCCEEECCCCSSC
T ss_pred -ecccccceecCCCCeeeEeeecCCcc--------------------------------ceeecccccccceeeeecccc
Confidence 44566677777777766544333211 11111111111111111111
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCC--eE
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLD--FI 392 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~--~I 392 (461)
.......+....++++.. ......|.+.+.++.....+. ..........+.+.+..+++.....+ .|
T Consensus 129 ~~~~~~~~~~~~~~~~~~----------~~g~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i 197 (269)
T d2hqsa1 129 NTEPTWFPDSQNLAFTSD----------QAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHI 197 (269)
T ss_dssp EEEEEECTTSSEEEEEEC----------TTSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred ccccccccccccceeccc----------ccCCceEeeeecccccceeee-cccccccccccccccceeEEEeecCCceee
Confidence 222233334444443322 223457888888887666555 33333445566667777777654443 45
Q ss_pred EEEEe
Q psy17325 393 DFCNY 397 (461)
Q Consensus 393 ~~~~~ 397 (461)
...+.
T Consensus 198 ~~~~~ 202 (269)
T d2hqsa1 198 AKQDL 202 (269)
T ss_dssp EEEET
T ss_pred eEeec
Confidence 55555
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.90 E-value=0.0023 Score=59.39 Aligned_cols=109 Identities=6% Similarity=-0.260 Sum_probs=67.0
Q ss_pred eeeecCCeEEEEeC----CCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC--------CCcEEEE
Q psy17325 155 AYDWIGGHIYWLDS----RLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE--------NPRIERI 222 (461)
Q Consensus 155 avd~~~~~ly~~d~----~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~--------~~~I~~~ 222 (461)
+..+.++..|++-. +..+|.+.+.++......+.... .| ++++.|... .||++.... ...|...
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~--~i~~~~~~~~~~~~g~~d~~v~v~ 101 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGS--DFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-TC-EEEECTTSS--CEEEEEEEETTTTSSSEEEEEEEE
T ss_pred ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-CC-cceECCCCC--EEEEEcccCccccccccCCeEEEE
Confidence 34445666666543 23457777766655444444332 24 799999877 899876311 1347777
Q ss_pred ecCCCCcEEEEec-------ccccceeEEeeccCCeeEEecCCCceeeeccc
Q psy17325 223 GMDGSNRSTIIST-------KIYWPNGLTLDIATRRVYFADSKLDFIDCKSL 267 (461)
Q Consensus 223 ~~dG~~~~~i~~~-------~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~ 267 (461)
+.........+.. ....|.++++.+.+++||+++...+.+...++
T Consensus 102 D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV 153 (368)
T ss_dssp CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred ECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 7765443222211 13468899999999999999877666655443
|
| >d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=2.3e-06 Score=53.85 Aligned_cols=24 Identities=38% Similarity=0.864 Sum_probs=22.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+++|||..||.|||||.
T Consensus 15 ~g~CI~~~~~CDg~~DC~DgsDE~ 38 (45)
T d1d2la_ 15 NSRCIQERWKCDGDNDCLDNSDEA 38 (45)
T ss_dssp TTEEECGGGTTTSSCTTTTCSTTS
T ss_pred CCCeEChhhhCcCcCcCCCCCCCC
Confidence 678999999999999999999994
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.79 E-value=8.2e-05 Score=68.00 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=85.1
Q ss_pred eEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc-EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeec
Q psy17325 196 GMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR-STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVN 274 (461)
Q Consensus 196 ~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~-~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~ 274 (461)
|+|+.+... +|+.+. ....|...++..... .++-...-..|.+|++.+.++.||++....+.|...
T Consensus 1 g~a~~~~~~--~l~~~~--~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~--------- 67 (346)
T d1jmxb_ 1 GPALKAGHE--YMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI--------- 67 (346)
T ss_dssp CCCCCTTCE--EEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEE---------
T ss_pred CccCCCCCc--EEEEEc--CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEE---------
Confidence 456666544 777665 346888888874322 222222345799999999999999998776543221
Q ss_pred cceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEee
Q psy17325 275 YSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM 354 (461)
Q Consensus 275 ~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~ 354 (461)
|.... ..+............... |.++++.|.+++||++.... ..+.|........|...+.
T Consensus 68 -----------d~~t~---~~~~~~~~~~~~~~~~~~---~~~v~~s~DG~~l~v~~~~~-~~~~~~~~~~~~~i~~~~~ 129 (346)
T d1jmxb_ 68 -----------DLDTC---KNTFHANLSSVPGEVGRS---MYSFAISPDGKEVYATVNPT-QRLNDHYVVKPPRLEVFST 129 (346)
T ss_dssp -----------ETTTT---EEEEEEESCCSTTEEEEC---SSCEEECTTSSEEEEEEEEE-EECSSCEEECCCEEEEEEG
T ss_pred -----------eCccC---eeeeeecccccccccCCc---eEEEEEecCCCEEEEEecCC-cceeeeeccCcceEEEEec
Confidence 11110 112222222211111111 88999999999999987541 1111111112344544443
Q ss_pred -cCCCeEEEeeC-CCCCceeEEEecCCCeEEEEcCCCCeEEEEEe
Q psy17325 355 -DGSNRSTIIST-KIYWPNGLTLDIATRRVYFADSKLDFIDFCNY 397 (461)
Q Consensus 355 -dG~~~~~l~~~-~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~ 397 (461)
+++....+... .-.....++ ...++++|+++. .+..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 170 (346)
T d1jmxb_ 130 ADGLEAKPVRTFPMPRQVYLMR-AADDGSLYVAGP---DIYKMDV 170 (346)
T ss_dssp GGGGGBCCSEEEECCSSCCCEE-ECTTSCEEEESS---SEEEECT
T ss_pred ccceeeeEEEeeeccCceEEEE-ecCCCEEEEeCC---cceEEEc
Confidence 23322222111 111222233 346777887753 3555555
|
| >d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: LDL receptor-like module superfamily: LDL receptor-like module family: LDL receptor-like module domain: Ligand-binding domain of low-density lipoprotein receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=3.3e-06 Score=52.99 Aligned_cols=24 Identities=38% Similarity=0.804 Sum_probs=22.6
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCC
Q psy17325 2 ADRCVNLTKVCDGKTDCPNGADEG 25 (461)
Q Consensus 2 ~~~Ci~~~~~Cd~~~dC~dg~de~ 25 (461)
+++||+.+++|||..||.||+||.
T Consensus 14 ~g~CI~~~~~CDg~~DC~DgsDE~ 37 (44)
T d1j8ea_ 14 SGRCIPEHWTCDGDNDCGDYSDET 37 (44)
T ss_dssp TSCEEEGGGTTSSSCCSSSSGGGS
T ss_pred CCCEEChhhcCcCcccCCCCCcCC
Confidence 579999999999999999999993
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.65 E-value=0.019 Score=51.63 Aligned_cols=201 Identities=8% Similarity=-0.032 Sum_probs=114.3
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
.|..+|+++.++.|+++. .+.|.+.+.+......+..+.......+++.|... +|.... ....|...++.....
T Consensus 19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~--~latg~--~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY--YCASGD--VHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEESSSTTC
T ss_pred CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCC--eEeccc--cCceEeeeeeecccc
Confidence 345678888888888775 35688888765444344444445688999999755 665544 345677777765432
Q ss_pred --EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCc-e
Q psy17325 230 --STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSN-A 306 (461)
Q Consensus 230 --~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~-~ 306 (461)
...+...-.....+++.+.+..|..+-...+. .+.+.+++-.. .
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~---------------------------------~~~v~~~~~~~~~ 139 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER---------------------------------FGHVFLFDTGTSN 139 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC---------------------------------SEEEEETTTCCBC
T ss_pred ccccccccccCccccccccccccccccccccccc---------------------------------ccccccccccccc
Confidence 22233323456788888876666655433221 12223333211 1
Q ss_pred EEEEeC-CeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 307 SILVSG-QLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 307 ~~l~~~-~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
..+... .....++++|.+..++++-.. .+.|...++............-.....+++++.+..|+.+
T Consensus 140 ~~l~~h~~~v~~v~~~~~~~~~l~sgs~------------d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 140 GNLTGQARAMNSVDFKPSRPFRIISGSD------------DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEET------------TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccccceeeeccccc------------ccccccccccccccccccccccccccccccCccccccccc
Confidence 111111 116788888877766666444 4455555555433333332334456789998766655554
Q ss_pred cCCCCeEEEEEecCCCCe
Q psy17325 386 DSKLDFIDFCNYDGTGRQ 403 (461)
Q Consensus 386 d~~~~~I~~~~~~g~g~~ 403 (461)
...+.|...++. ++..
T Consensus 208 -~~d~~v~~~d~~-~~~~ 223 (311)
T d1nr0a1 208 -GGDGTIVLYNGV-DGTK 223 (311)
T ss_dssp -ETTSCEEEEETT-TCCE
T ss_pred -cccccccccccc-cccc
Confidence 345677777772 4443
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=2.2e-05 Score=48.71 Aligned_cols=37 Identities=27% Similarity=0.560 Sum_probs=28.7
Q ss_pred CCCcccCCCCCCCC--CceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 29 DLAECKHKFGLCSN--TCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 29 ~~~~C~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+++||......|.+ .|.++.++|.|.|++||. +.+|+
T Consensus 2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~----G~~Ce 40 (42)
T d2vj3a1 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCE 40 (42)
T ss_dssp CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTSC
T ss_pred CCccccCCCCCCCCCcEeECCCCCEEeECCCCCc----CCCCc
Confidence 46788755556754 699999999999999996 55664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.53 E-value=0.0085 Score=52.49 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=60.4
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeec-CCC---CcEEEEecCCCCcEEEEec
Q psy17325 160 GGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDW-GEN---PRIERIGMDGSNRSTIIST 235 (461)
Q Consensus 160 ~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~-~~~---~~I~~~~~dG~~~~~i~~~ 235 (461)
++.|.|+.. +.|.+.+++|...+.|.... ....+.++.|... +|.|+.+ ... ..|+.++.++...+.|...
T Consensus 12 G~~v~f~~~--~dl~~~d~~~g~~~~Lt~~~-~~~~~p~~SPDG~--~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~ 86 (281)
T d1k32a2 12 GDRIIFVCC--DDLWEHDLKSGSTRKIVSNL-GVINNARFFPDGR--KIAIRVMRGSSLNTADLYFYNGENGEIKRITYF 86 (281)
T ss_dssp TTEEEEEET--TEEEEEETTTCCEEEEECSS-SEEEEEEECTTSS--EEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred CCEEEEEeC--CcEEEEECCCCCEEEEecCC-CcccCEEECCCCC--EEEEEEeeCCCCCceEEEEEEecCCceEEeeec
Confidence 556666533 56888888888777665432 3456778888755 7766532 221 4689999988776555322
Q ss_pred ------ccccceeEEeeccCCeeEEecCCC
Q psy17325 236 ------KIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 236 ------~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
........+..+.++.|+++....
T Consensus 87 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 116 (281)
T d1k32a2 87 SGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 116 (281)
T ss_dssp CEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred CCCccCccccccccccCCCCCEEEEEEccC
Confidence 112345667777788888876543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.044 Score=49.35 Aligned_cols=244 Identities=6% Similarity=0.023 Sum_probs=129.1
Q ss_pred CCceeeccccceeEEEeccccceeecccccCcccccceEEEc-CccceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE
Q psy17325 105 NHTCKAINHSAAFLIISNRHSILVADLEEKGKDHRAQDIVVS-GLDLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR 183 (461)
Q Consensus 105 ~~~C~~~~~~~~~l~~~~~~~I~~~~l~~~~~~~s~~~~~~~-g~~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~ 183 (461)
...|....+...+|..+....|..-++............... .-.....+++.+.+..| ++-..++.|.+.++.....
T Consensus 53 ~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l-~s~~~dg~i~iwd~~~~~~ 131 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL-IVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE-EEEESSSEEEEEECCCC--
T ss_pred cEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEE-EEeeccccccccccccccc
Confidence 345555555455555554444554455432211100111111 11234567776655444 4445578999999776543
Q ss_pred EEE--ecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCce
Q psy17325 184 IVL--AKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDF 261 (461)
Q Consensus 184 ~~l--~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~ 261 (461)
... +.........+++.|... .++.+. ....|...++..................+++.+.+..++.+....
T Consensus 132 ~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~--~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~-- 205 (337)
T d1gxra_ 132 RIKAELTSSAPACYALAISPDSK--VCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN-- 205 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSS--EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred ccccccccccccccccccccccc--cccccc--ccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 322 223334456788888755 555544 346788777765443333333334566788887777777665432
Q ss_pred eeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEe-CCeeeeEEEeccCCeEEEeecCceeeEEE
Q psy17325 262 IDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVS-GQLYEALALDLENGMLYYSTLKCTRWLFW 340 (461)
Q Consensus 262 i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~-~~~p~~iavd~~~~~lY~t~~~~~~~l~~ 340 (461)
.|...++.......... ...+..++++|.+..|+....
T Consensus 206 ---------------------------------~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-------- 244 (337)
T d1gxra_ 206 ---------------------------------TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-------- 244 (337)
T ss_dssp ---------------------------------EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET--------
T ss_pred ---------------------------------cccccccccceeecccccccceEEEEEcccccccceecc--------
Confidence 24444443222211222 222778899987776665433
Q ss_pred eecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcCCCCeEEEEEecCCCCeE
Q psy17325 341 TDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDFCNYDGTGRQQ 404 (461)
Q Consensus 341 ~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~~~~~I~~~~~~g~g~~~ 404 (461)
.+.|...+++........ ..-....+|++.+.+..|+-+ ...+.|...++. +|...
T Consensus 245 -----d~~i~i~d~~~~~~~~~~-~~~~~i~~v~~s~~g~~l~s~-s~Dg~i~iwd~~-~~~~~ 300 (337)
T d1gxra_ 245 -----SSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVST-GKDNLLNAWRTP-YGASI 300 (337)
T ss_dssp -----TSCEEEEETTSSCEEEEC-CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT-TCCEE
T ss_pred -----cccccccccccccccccc-ccccccceEEECCCCCEEEEE-eCCCeEEEEECC-CCCEE
Confidence 344555555544433332 333456788888655555544 445778888873 45543
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.36 E-value=4.4e-05 Score=45.68 Aligned_cols=37 Identities=19% Similarity=0.419 Sum_probs=28.8
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
|+++|.+++.+-...|++..++|.|.|++||. |..|+
T Consensus 1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce 37 (37)
T d2c4fl1 1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFE----GRNCE 37 (37)
T ss_dssp TCCGGGGCCCCTTCEEEEETTEEEEECCTTEE----STTSC
T ss_pred CcccCCCCCCCCCCEEECCCCCeEEECCCCCc----CCCCC
Confidence 46788877655556799999999999999996 55553
|
| >d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=3.8e-05 Score=47.56 Aligned_cols=36 Identities=42% Similarity=0.992 Sum_probs=29.0
Q ss_pred ecCcceec-CCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 69 QDMNECEQ-PGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 69 ~d~~eC~~-~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
+|++||.. ...|.+ .|.++.++|.|.|++||. +..|
T Consensus 1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~----G~~C 39 (42)
T d2vj3a1 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRC 39 (42)
T ss_dssp CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTS
T ss_pred CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCc----CCCC
Confidence 47889973 457854 899999999999999995 5566
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.32 E-value=0.0013 Score=61.81 Aligned_cols=97 Identities=10% Similarity=0.022 Sum_probs=60.2
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEcCCCCceEEEEeecCCC------------------CcE
Q psy17325 159 IGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGEN------------------PRI 219 (461)
Q Consensus 159 ~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~------------------~~I 219 (461)
.++.||+.|..+.+|.|++++......++. .....+.|+...+..+ ..|+...++. ..+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~--T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCC--eEEEEccCccccccCCCCccccchhhcceEE
Confidence 378899999999999999999988765544 4456789988854433 4444431111 112
Q ss_pred EEEecCCCCcEEEEecc-cccceeEEeeccCCeeEEecCCC
Q psy17325 220 ERIGMDGSNRSTIISTK-IYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 220 ~~~~~dG~~~~~i~~~~-~~~P~glavD~~~~~ly~~d~~~ 259 (461)
..++.+ ..++...-. -..|.++++++.++.+|++...+
T Consensus 176 t~ID~~--tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 176 TAVDAD--KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp EEEETT--TTEEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred EEEecC--CceEEEEeeeCCChhccccCCCCCEEEEEeccc
Confidence 223332 222211110 12578899999999888887554
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=8.7e-05 Score=44.89 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=28.1
Q ss_pred CCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 30 LAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+++|.+++.+-...|++..++|.|.|++||. |..|+
T Consensus 1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~----G~~Ce 36 (39)
T d2vj3a2 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYE----GVHCE 36 (39)
T ss_dssp CCTTTTCCCCSSCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred CcCCcCCCCCCCCEEECCCCCEEEeCCCCCc----cCcCe
Confidence 4678776644456799999999999999996 56664
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=6.7e-05 Score=45.47 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCCcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 29 DLAECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 29 ~~~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+.++|.+++..-...|++..++|.|.|++||. +..|+
T Consensus 2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce 38 (39)
T d1edmb_ 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFE----GKNCE 38 (39)
T ss_dssp CCCTTTTCCCCTTCEEEEETTEEEEECCTTCC----STTSC
T ss_pred ccccCCCCCCCCCcEEEcCCCCEEEECCCCCC----CCCCC
Confidence 35678776644456799999999999999995 56664
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.29 E-value=0.031 Score=50.21 Aligned_cols=129 Identities=9% Similarity=0.059 Sum_probs=85.7
Q ss_pred EEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCC-CeEEEEeCCCCcEEEEecCCCCCcee
Q psy17325 118 LIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL-NRIEVCDENGTNRIVLAKDNITQPRG 196 (461)
Q Consensus 118 l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~-~~I~~~~~~G~~~~~l~~~~~~~p~~ 196 (461)
+.++.+.+++..++.+..... + ..-..+..+++.+.++.|+++.... +.|.+.+.++.....+.. ....+..
T Consensus 18 ~a~~~~g~v~v~d~~~~~~~~-----~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~-~~~~v~~ 90 (360)
T d1k32a3 18 IAFVSRGQAFIQDVSGTYVLK-----V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-NLGNVFA 90 (360)
T ss_dssp EEEEETTEEEEECTTSSBEEE-----C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC-CCCSEEE
T ss_pred EEEEECCeEEEEECCCCcEEE-----c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC-CCceEEe
Confidence 444455666666554322110 1 1123567788888788887765444 468889988877665543 3356889
Q ss_pred EEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecC
Q psy17325 197 MMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 197 ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~ 257 (461)
+++.|... +|.... ....+...++++.....+..........+++.+.++.|.++..
T Consensus 91 ~~~spdg~--~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~ 147 (360)
T d1k32a3 91 MGVDRNGK--FAVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP 147 (360)
T ss_dssp EEECTTSS--EEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred eeeccccc--ccceec--cccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence 99999866 777665 3457888888887766666655556778999888888877653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.29 E-value=0.0051 Score=55.78 Aligned_cols=171 Identities=11% Similarity=0.079 Sum_probs=102.0
Q ss_pred CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEecccccceeEEeeccCC
Q psy17325 171 NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 250 (461)
Q Consensus 171 ~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~ 250 (461)
++|++.+.++.....+.. -.....+++.|..+ +|+++.......|...++.+...+.+ ......+..+++.+.+.
T Consensus 24 g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~~~~-~~~~~~v~~~~~spdg~ 98 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGK 98 (360)
T ss_dssp TEEEEECTTSSBEEECSC--CSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSS
T ss_pred CeEEEEECCCCcEEEccC--CCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcEEEe-eCCCceEEeeeeccccc
Confidence 567777776665554432 24688999999865 77776523334677888877655433 33455678899999888
Q ss_pred eeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe--eeeEEEeccCCeEE
Q psy17325 251 RVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL--YEALALDLENGMLY 328 (461)
Q Consensus 251 ~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~--p~~iavd~~~~~lY 328 (461)
.|..+.... .+...++++.....+..... ...+++.|.+..|.
T Consensus 99 ~l~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 99 FAVVANDRF-----------------------------------EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 143 (360)
T ss_dssp EEEEEETTS-----------------------------------EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred ccceecccc-----------------------------------ccccccccccceeeeeecccccccchhhccceeeee
Confidence 877765543 35566666666555554333 77899999888887
Q ss_pred EeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEE
Q psy17325 329 YSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 329 ~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
++...... . ........+...++.+.....+. .......++++.+++.+|++.
T Consensus 144 ~~~~~~~~-~--~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 144 YGFPLKHG-E--TDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp EEEEECSS-T--TCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEE
T ss_pred eecccccc-c--eeeccccceeeeccccCceeeec-ccccccccccccCCCCEEEEE
Confidence 76433000 0 00011223444455544333333 333445667777777777765
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00022 Score=41.96 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=26.5
Q ss_pred CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
|+|.+++.+-...|++..++|+|.|++||. +..|+
T Consensus 1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~CE 35 (35)
T d2vj3a3 1 DECASSPCLHNGRCLDKINEFQCECPTGFT----GHLCQ 35 (35)
T ss_dssp CTTTTCCSTTTCEEEECSSCEEEECCTTEE----SSSSC
T ss_pred CCCCCCCCCCCcEEECCCCCeEEECCCCCC----CCCcC
Confidence 467666644556799999999999999996 55653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.94 E-value=0.12 Score=46.02 Aligned_cols=237 Identities=8% Similarity=-0.049 Sum_probs=124.2
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE--EEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCC
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR--IVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDG 226 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~--~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG 226 (461)
..+..+++.+. +++..+-..++.|.+.++..... ...+...-.....|++.|... +|..+-.+....+...+++-
T Consensus 59 ~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~ 135 (311)
T d1nr0a1 59 HQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDT 135 (311)
T ss_dssp SCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTT
T ss_pred CCEEEEEEeCC-CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc--cccccccccccccccccccc
Confidence 35677788765 45555666688999999766542 222333224578899998755 66655422223455555553
Q ss_pred CCcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 227 SNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 227 ~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
......+.........+++.+.++.++++-.... .|...++.....
T Consensus 136 ~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~----------------------------------~i~i~d~~~~~~ 181 (311)
T d1nr0a1 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN----------------------------------TVAIFEGPPFKF 181 (311)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS----------------------------------CEEEEETTTBEE
T ss_pred ccccccccccccccccccccccceeeeccccccc----------------------------------cccccccccccc
Confidence 2221112222234577888876666666543332 344444444333
Q ss_pred EEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-------CCCCCceeEEEec
Q psy17325 307 SILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-------TKIYWPNGLTLDI 377 (461)
Q Consensus 307 ~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-------~~l~~p~glaiD~ 377 (461)
........ ...++++|.+..|+.+... +.|...++.......... ..-.....|++.+
T Consensus 182 ~~~~~~~~~~i~~v~~~p~~~~l~~~~~d-------------~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~ 248 (311)
T d1nr0a1 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGD-------------GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 248 (311)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred ccccccccccccccccCcccccccccccc-------------ccccccccccccccccccccccccccccccccccccCC
Confidence 33333222 6889999877666554332 223333322111111110 1123456789986
Q ss_pred CCCeEEEEcCCCCeEEEEEecCCCCeEEEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCceee
Q psy17325 378 ATRRVYFADSKLDFIDFCNYDGTGRQQVILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEFLK 447 (461)
Q Consensus 378 ~~~~ly~~d~~~~~I~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~i~ 447 (461)
.+..|+.+ ...+.|...++. ++.....+..... .. ....++.+.++.|+... .++.|+
T Consensus 249 ~~~~l~tg-s~Dg~v~iwd~~-t~~~~~~l~~~~~-~~--------~~~~~~~~~~~~l~s~s-~dG~i~ 306 (311)
T d1nr0a1 249 DGTKIASA-SADKTIKIWNVA-TLKVEKTIPVGTR-IE--------DQQLGIIWTKQALVSIS-ANGFIN 306 (311)
T ss_dssp TSSEEEEE-ETTSEEEEEETT-TTEEEEEEECCSS-GG--------GCEEEEEECSSCEEEEE-TTCCEE
T ss_pred CCCEEEEE-eCCCeEEEEECC-CCcEEEEEECCCC-cc--------ceEEEEEecCCEEEEEE-CCCEEE
Confidence 66666654 345678888883 5654444432211 11 12356666677776554 556554
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00026 Score=42.71 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=26.5
Q ss_pred CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
++|.+++.+-...|++..++|.|.|++||. +..|+
T Consensus 1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~----G~~Ce 35 (39)
T d1xkba1 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFE----GKNCE 35 (39)
T ss_dssp CTTTTCCCCSSCEECCCSSSCCEECCTTEE----TTTTC
T ss_pred CcCCCCCCCCCcEEECCCCCEEEECCCCCC----cCcCe
Confidence 467666544455799999999999999996 66675
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.92 E-value=0.042 Score=50.34 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=65.5
Q ss_pred eeeEEE--eccCCeEEEeecCceeeEEEeecCCCCceEEEee--cCCC--eEEEe--eCCCCCceeEEEecCCCeEEEEc
Q psy17325 315 YEALAL--DLENGMLYYSTLKCTRWLFWTDWGENPRIERIGM--DGSN--RSTII--STKIYWPNGLTLDIATRRVYFAD 386 (461)
Q Consensus 315 p~~iav--d~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~--dG~~--~~~l~--~~~l~~p~glaiD~~~~~ly~~d 386 (461)
|+|+.+ ++..+.+|.--.. ..++++...+ ++.. ...++ ...-.++.|+++|..+++||+++
T Consensus 130 vYGlc~y~~~~~g~~~afv~~-----------k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisE 198 (353)
T d1h6la_ 130 VYGFSLYHSQKTGKYYAMVTG-----------KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAE 198 (353)
T ss_dssp CCCEEEEECTTTCCEEEEEEC-----------SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEecCCCCeEEEEEEc-----------CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEec
Confidence 889988 7778866543222 1233333222 2221 11221 13345789999999999999998
Q ss_pred CCCCeEEEEEecCCCCe-EEEEEccccceeeccCCCCCcceEEEeee---CCEEEEEeCCCcee
Q psy17325 387 SKLDFIDFCNYDGTGRQ-QVILIDLMVEFTNDLMGDNGVPALALDLE---NGMLYYSTEGAEFL 446 (461)
Q Consensus 387 ~~~~~I~~~~~~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~lYwtd~~~~~i 446 (461)
... .|++++.+.++.. ..++.....+ .+.++ +++++|-.. +|+|..++++++++
T Consensus 199 E~~-Giw~~~a~~~~~~~~~~i~~~~g~---~l~~D--~EGlaiy~~~~~~GylivSsQG~n~f 256 (353)
T d1h6la_ 199 EDE-AIWKFSAEPDGGSNGTVIDRADGR---HLTPD--IEGLTIYYAADGKGYLLASSQGNSSY 256 (353)
T ss_dssp TTT-EEEEEESSTTSCSCCEEEEECSSS---SCCSC--EEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred Ccc-ceEEEEeccCCCccceeeecccCc---cccCC--ccccEEEEcCCCCeEEEEEcCCCCeE
Confidence 864 7899888644332 2332221111 11222 345555332 46999999999876
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.72 E-value=0.16 Score=46.36 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=43.3
Q ss_pred CCCCceeEEE--cCCCCceEEEEeecCCCCcEEE--EecCCCCc--EEEEec--ccccceeEEeeccCCeeEEecCCC
Q psy17325 190 NITQPRGMML--DPSPGTRWLFWTDWGENPRIER--IGMDGSNR--STIIST--KIYWPNGLTLDIATRRVYFADSKL 259 (461)
Q Consensus 190 ~~~~p~~ia~--d~~~g~~~ly~td~~~~~~I~~--~~~dG~~~--~~i~~~--~~~~P~glavD~~~~~ly~~d~~~ 259 (461)
.+..|.|+++ ++..|.-++|.++ ....+.. ...++... ..++.. .-..+.|+++|..+++||+++...
T Consensus 126 ~~~~vYGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~ 201 (353)
T d1h6la_ 126 AIDEVYGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDE 201 (353)
T ss_dssp SSSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT
T ss_pred ccCcceEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCcc
Confidence 3457899999 7777733455555 3345444 44444332 222221 224689999999999999999875
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.70 E-value=0.00021 Score=43.35 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.8
Q ss_pred CceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 43 TCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 43 ~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
.|.+++++|.|.|++||.. ++..|.
T Consensus 14 ~C~Nt~Gsy~C~C~~Gy~G--dG~~C~ 38 (40)
T d1gl4a2 14 ECRDYATGFCCRCVANYTG--NGRQCV 38 (40)
T ss_dssp EEEECSSCEEEEECTTEEE--CSSSEE
T ss_pred EeecCCCCeEeECCCCCcC--CCCEee
Confidence 5888888888888888863 566664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.60 E-value=0.16 Score=43.70 Aligned_cols=227 Identities=15% Similarity=0.086 Sum_probs=117.0
Q ss_pred EEEeccccceeecccccCcccccceEEEcCccceeeeeeeecCCeEEEEeCCC-----CeEEEEeCCCCcEEEEecCC--
Q psy17325 118 LIISNRHSILVADLEEKGKDHRAQDIVVSGLDLVEGLAYDWIGGHIYWLDSRL-----NRIEVCDENGTNRIVLAKDN-- 190 (461)
Q Consensus 118 l~~~~~~~I~~~~l~~~~~~~s~~~~~~~g~~~p~~iavd~~~~~ly~~d~~~-----~~I~~~~~~G~~~~~l~~~~-- 190 (461)
+.+.....|..+++.+.... -+..+-....+.++.+.++.|.++.... ..|.+.+.++.....|....
T Consensus 15 v~f~~~~dl~~~d~~~g~~~-----~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~ 89 (281)
T d1k32a2 15 IIFVCCDDLWEHDLKSGSTR-----KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 89 (281)
T ss_dssp EEEEETTEEEEEETTTCCEE-----EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred EEEEeCCcEEEEECCCCCEE-----EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence 44555566777777654321 1233333455667777788887764221 25888998888776664321
Q ss_pred ----CCCceeEEEcCCCCceEEEEeecCCC----CcEEEEecCCCCcEEEEecccccceeEEeeccCCeeEEecCCCcee
Q psy17325 191 ----ITQPRGMMLDPSPGTRWLFWTDWGEN----PRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFI 262 (461)
Q Consensus 191 ----~~~p~~ia~d~~~g~~~ly~td~~~~----~~I~~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i 262 (461)
......+++.|... .|+++..... ..+..++.++...+... ......+........+|.........
T Consensus 90 ~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (281)
T d1k32a2 90 STGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTFELPHW 164 (281)
T ss_dssp EETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCSCCTTS
T ss_pred ccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeecccccee
Confidence 12345677888766 8888764321 34566666665432221 11122233332222333322221100
Q ss_pred e-ecccc---eeee---------ecc-------ceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCeeeeEEEec
Q psy17325 263 D-CKSLE---IKTN---------VNY-------STIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQLYEALALDL 322 (461)
Q Consensus 263 ~-~~~~~---~~~~---------v~~-------~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~p~~iavd~ 322 (461)
. ...+. .... ... .+....++|....... ..|++.+++|...+.|..........+.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~d~~g~~~~~lt~~~~~~~~~~Sp 242 (281)
T d1k32a2 165 KGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGF--GQIYSTDLDGKDLRKHTSFTDYYPRHLNT 242 (281)
T ss_dssp TTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSS--CEEEEEETTSCSCEECCCCCSSCEEEEEE
T ss_pred eeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccc--cceEEEeCCCCceEEeecCCCcccccCcC
Confidence 0 00000 0000 000 0111244554332221 57999999999887765433222224556
Q ss_pred cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCc
Q psy17325 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWP 370 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p 370 (461)
.++.|+|+. .+.|+.+++++...+.|....+.+|
T Consensus 243 DG~~I~f~~--------------~~~l~~~d~~~g~~~~i~~~~~~~~ 276 (281)
T d1k32a2 243 DGRRILFSK--------------GGSIYIFNPDTEKIEKIEIGDLESP 276 (281)
T ss_dssp SSSCEEEEE--------------TTEEEEECTTTCCEEECCCCCCCBC
T ss_pred CCCEEEEEe--------------CCEEEEEECCCCCEEEeccCCcCCC
Confidence 677777754 3478888988887777654555554
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.00039 Score=42.20 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=26.2
Q ss_pred cccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCceecC
Q psy17325 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQDM 71 (461)
Q Consensus 32 ~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~d~ 71 (461)
.|.+++..-...|....++|+|.|++||. |..|+.+
T Consensus 3 ~C~~~pC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce~~ 38 (40)
T d1g1sa2 3 SCQDMSCSKQGECLETIGNYTCSCYPGFY----GPECEYV 38 (40)
T ss_dssp CCCTTGGGGSEEEEECSSSEEEEECTTEE----STTSCEE
T ss_pred cccCCcCCCCcEEECCCCCeEEeCCCCcc----CCCCCCC
Confidence 45555433345799999999999999996 6777654
|
| >d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-like domain of nidogen-1 domain: EGF-like domain of nidogen-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.0014 Score=39.51 Aligned_cols=26 Identities=23% Similarity=0.676 Sum_probs=22.6
Q ss_pred ceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 83 MCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 83 ~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
.|.|++|+|.|.|.+||. .++..|.+
T Consensus 14 ~C~Nt~Gsy~C~C~~Gy~--GdG~~C~~ 39 (40)
T d1gl4a2 14 ECRDYATGFCCRCVANYT--GNGRQCVA 39 (40)
T ss_dssp EEEECSSCEEEEECTTEE--ECSSSEEE
T ss_pred EeecCCCCeEeECCCCCc--CCCCEeeC
Confidence 799999999999999997 46788864
|
| >d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0014 Score=39.43 Aligned_cols=34 Identities=32% Similarity=0.820 Sum_probs=26.6
Q ss_pred cCcceecCCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 70 DMNECEQPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 70 d~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
|+|+|. ..+|.+ .|.+..++|+|.|++||. ++.|
T Consensus 2 d~d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~----G~~C 37 (39)
T d1edmb_ 2 DGDQCE-SNPCLNGGSCKDDINSYECWCPFGFE----GKNC 37 (39)
T ss_dssp CCCTTT-TCCCCTTCEEEEETTEEEEECCTTCC----STTS
T ss_pred ccccCC-CCCCCCCcEEEcCCCCEEEECCCCCC----CCCC
Confidence 567785 456753 899999999999999993 5666
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.4 Score=40.88 Aligned_cols=204 Identities=8% Similarity=0.064 Sum_probs=107.1
Q ss_pred eeeeeeecCCeEEEEeCCC--CeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCC-CCcEEEEecCCCC
Q psy17325 152 EGLAYDWIGGHIYWLDSRL--NRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGE-NPRIERIGMDGSN 228 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~--~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~-~~~I~~~~~dG~~ 228 (461)
...++.+.++.|.++.... ..+.+.+.++...+.+.... .........|... .|++..... ...+.........
T Consensus 42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~spdg~--~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS-SCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCC
T ss_pred eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeee-cccccceecCCCC--eeeEeeecCCccceeeccccccc
Confidence 3456777788887665443 35777888887766665432 4566777777644 444433122 2223322222222
Q ss_pred cEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEE
Q psy17325 229 RSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASI 308 (461)
Q Consensus 229 ~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~ 308 (461)
..... ...............+.++++....+. ..|.+..+++.....
T Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------------------~~i~~~~~~~~~~~~ 165 (269)
T d2hqsa1 119 IRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGR--------------------------------PQVYKVNINGGAPQR 165 (269)
T ss_dssp EEECC-CCSSCEEEEEECTTSSEEEEEECTTSS--------------------------------CEEEEEETTSSCCEE
T ss_pred ceeee-eccccccccccccccccceecccccCC--------------------------------ceEeeeeccccccee
Confidence 21111 111122222333444555554433321 246667777665554
Q ss_pred EEeCCe-eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC
Q psy17325 309 LVSGQL-YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 387 (461)
Q Consensus 309 l~~~~~-p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~ 387 (461)
+..... ....++.|.+..+++.... +....|...+.++...+.+. ....-...++.+++++|+++..
T Consensus 166 ~~~~~~~~~~~~~spdg~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~--~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 166 ITWEGSQNQDADVSSDGKFMVMVSSN----------GGQQHIAKQDLATGGVQVLS--STFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEEC----------SSCEEEEEEETTTCCEEECC--CSSSCEEEEECTTSSEEEEEEE
T ss_pred eecccccccccccccccceeEEEeec----------CCceeeeEeecccccceEee--cCccccceEECCCCCEEEEEEc
Confidence 444332 4455677777766654433 22345666666666554443 2222345678888888877543
Q ss_pred --CCCeEEEEEecCCCCeEE
Q psy17325 388 --KLDFIDFCNYDGTGRQQV 405 (461)
Q Consensus 388 --~~~~I~~~~~~g~g~~~~ 405 (461)
+...|+.+++ +|...+
T Consensus 234 ~~~~~~l~~~~~--dg~~~~ 251 (269)
T d2hqsa1 234 QGMGSVLNLVST--DGRFKA 251 (269)
T ss_dssp ETTEEEEEEEET--TSCCEE
T ss_pred CCCCcEEEEEEC--CCCCEE
Confidence 3457888888 555543
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.84 E-value=0.00086 Score=40.36 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=24.7
Q ss_pred cccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 32 ECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 32 ~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
+|.+++.+-...|+...++|.|.|++||. +..|+
T Consensus 3 ~C~~~pC~ngg~C~~~~~~~~C~C~~g~~----G~~Ce 36 (39)
T d1g1ta2 3 ACTNTSCSGHGECVETINNYTCKCDPGFS----GLKCE 36 (39)
T ss_dssp CCCTTGGGGSEEEEEETTEEEEEECTTEE----STTSC
T ss_pred cccCCcCCCCcEEECCCCCEEEeCCCCCc----CcCcC
Confidence 45555433345799889999999999996 56675
|
| >d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor IX (IXa) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.82 E-value=0.0015 Score=38.76 Aligned_cols=30 Identities=30% Similarity=0.763 Sum_probs=24.1
Q ss_pred cCcceecCCccc--CceeeccCCccccCCCCee
Q psy17325 70 DMNECEQPGYCS--QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 70 d~~eC~~~~~C~--~~C~~~~g~~~C~C~~g~~ 100 (461)
|+|+|. ..+|. ..|.+..++|.|.|++||.
T Consensus 1 D~d~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~ 32 (37)
T d2c4fl1 1 DGDQCA-SSPCQNGGSCKDQLQSYICFCLPAFE 32 (37)
T ss_dssp TCCGGG-GCCCCTTCEEEEETTEEEEECCTTEE
T ss_pred CcccCC-CCCCCCCCEEECCCCCeEEECCCCCc
Confidence 567785 44575 3899999999999999995
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.65 Score=41.08 Aligned_cols=192 Identities=9% Similarity=0.018 Sum_probs=101.9
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcE----EEEec-CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEec
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNR----IVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGM 224 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~----~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~ 224 (461)
.+..+++.+.+..|+- -. ++.|.+.++..... ..+.. ..-.....|++.|... +|+.+. ....|...++
T Consensus 53 ~V~~v~fs~~g~~lat-g~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~--~dg~i~iwd~ 126 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYT-GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGG--EASTLSIWDL 126 (337)
T ss_dssp CCCEEEECSSSSEEEE-EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEE--SSSEEEEEEC
T ss_pred cEEEEEECCCCCEEEE-EE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEee--cccccccccc
Confidence 4567888875655554 33 68899998764321 12111 2223357899998766 776554 3457777777
Q ss_pred CCCCcEEEE--ecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCC
Q psy17325 225 DGSNRSTII--STKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMD 302 (461)
Q Consensus 225 dG~~~~~i~--~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~ 302 (461)
.....+... .........+++.+.+..|+.+.... .|...++.
T Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----------------------------------~i~~~~~~ 171 (337)
T d1gxra_ 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG-----------------------------------NIAVWDLH 171 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS-----------------------------------CEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccc-----------------------------------cccccccc
Confidence 654433222 22223345677776555555443332 34455544
Q ss_pred CCceEEEEeCCe--eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCC
Q psy17325 303 GSNASILVSGQL--YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATR 380 (461)
Q Consensus 303 g~~~~~l~~~~~--p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~ 380 (461)
............ ...+++.+.+..++.+... +.|...++......... ..-..+..|++++.+.
T Consensus 172 ~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~ 237 (337)
T d1gxra_ 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGE 237 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSS
T ss_pred ccccccccccccccccccccccccccccccccc-------------ccccccccccceeeccc-ccccceEEEEEccccc
Confidence 443333322222 6778888777766665433 33333333222111111 2234567788886666
Q ss_pred eEEEEcCCCCeEEEEEe
Q psy17325 381 RVYFADSKLDFIDFCNY 397 (461)
Q Consensus 381 ~ly~~d~~~~~I~~~~~ 397 (461)
.|+.+. ..+.|...++
T Consensus 238 ~l~~~~-~d~~i~i~d~ 253 (337)
T d1gxra_ 238 WLAVGM-ESSNVEVLHV 253 (337)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred ccceec-cccccccccc
Confidence 666553 3467777777
|
| >d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0026 Score=38.11 Aligned_cols=33 Identities=33% Similarity=0.898 Sum_probs=25.4
Q ss_pred CcceecCCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 71 MNECEQPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 71 ~~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
||+|. ..+|.+ .|++..++|.|.|++||. +..|
T Consensus 1 Id~C~-~~PC~n~g~C~~~~~~y~C~C~~G~~----G~~C 35 (39)
T d2vj3a2 1 VNECV-SNPCQNDATCLDQIGEFQCICMPGYE----GVHC 35 (39)
T ss_dssp CCTTT-TCCCCSSCEEEECSSCEEEECCTTEE----SSSS
T ss_pred CcCCc-CCCCCCCCEEECCCCCEEEeCCCCCc----cCcC
Confidence 46774 345753 899999999999999995 5566
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.0027 Score=39.95 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=24.7
Q ss_pred CcccCCCCCCCCCceeCCCCceEeCCCCCeecCCCCcee
Q psy17325 31 AECKHKFGLCSNTCHPTPLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
++|.+++.+- .+|.+..++|.|.|++||. |.+|+
T Consensus 9 ~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~----G~~Ce 42 (48)
T d1autl1 9 HPCASLCCGH-GTCIDGIGSFSCDCRSGWE----GRFCQ 42 (48)
T ss_dssp CSSSSTTTTS-EEECCCSSCCCEEECTTEE----STTSC
T ss_pred CcccCCCCCC-CEEECCCCCCeEeCCCCCc----CCCcc
Confidence 4566554332 3688888999999999996 66775
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0065 Score=34.47 Aligned_cols=30 Identities=37% Similarity=0.584 Sum_probs=23.0
Q ss_pred CcccCCCCCCCC-CceeCCCCceEeCCCCCee
Q psy17325 31 AECKHKFGLCSN-TCHPTPLGALCTCPPGEIL 61 (461)
Q Consensus 31 ~~C~~~~~~C~~-~C~~~~~~~~C~C~~G~~l 61 (461)
+||+..+ .|.+ +|.|..++|.|.|..||..
T Consensus 2 dECsign-pCGnGTCtNviGgFec~C~~GFep 32 (39)
T d1emoa2 2 DECSVGN-PCGNGTCKNVIGGFECTCEEGFEP 32 (39)
T ss_dssp CGGGTTC-SSSSSCEEECSSSEEECCSSSSCC
T ss_pred CccccCC-ccCCceeeecccceEEeecCCcCC
Confidence 4676553 5754 6999999999999999953
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.98 E-value=1.2 Score=39.97 Aligned_cols=102 Identities=8% Similarity=0.057 Sum_probs=61.8
Q ss_pred eeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE--EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 152 EGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI--VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 152 ~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~--~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
..+++++.+ ++..+-..++.|.+.++++.... ..+.+.......|++.|... +|.-.. ....|...+++....
T Consensus 11 t~~~~s~dg-~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s--~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 11 SCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN--RIVTCG--TDRNAYVWTLKGRTW 85 (371)
T ss_dssp CEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT--EEEEEE--TTSCEEEEEEETTEE
T ss_pred EEEEECCCC-CEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC--EEEEEE--CCCeEEEEeeccccc
Confidence 456776544 44444566778988888765432 22333334578999999866 665544 345677777765433
Q ss_pred E-EEEe-cccccceeEEeeccCCeeEEecCC
Q psy17325 230 S-TIIS-TKIYWPNGLTLDIATRRVYFADSK 258 (461)
Q Consensus 230 ~-~i~~-~~~~~P~glavD~~~~~ly~~d~~ 258 (461)
. .+.. .....+..+++++.++.|+.....
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d 116 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGS 116 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccccceeeccc
Confidence 2 2222 223457788998877777765543
|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Sheep (Ovis aries) [TaxId: 9940]
Probab=94.68 E-value=0.0079 Score=36.60 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=26.2
Q ss_pred CCcccCCCCCCCCCceeC-CCCceEeCCC-CCeecCCCCcee
Q psy17325 30 LAECKHKFGLCSNTCHPT-PLGALCTCPP-GEILSNDSVTCQ 69 (461)
Q Consensus 30 ~~~C~~~~~~C~~~C~~~-~~~~~C~C~~-G~~l~~~~~~C~ 69 (461)
+++|..++.+-...|+.. .++|.|.|+. ||. +.+|+
T Consensus 2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce 39 (42)
T d1q4ga2 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYS----GPNCT 39 (42)
T ss_dssp CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEE----TTTTC
T ss_pred CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcC----CcCcC
Confidence 467877665555679875 5789999986 895 66775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.20 E-value=1.6 Score=38.19 Aligned_cols=106 Identities=13% Similarity=-0.036 Sum_probs=54.5
Q ss_pred ceeeeeeeec-CCeEEEEeCCCCeEEEEeCCCCc----EEE----EecCCCCCceeEEEcCCCCceEEEEeecCCCCcEE
Q psy17325 150 LVEGLAYDWI-GGHIYWLDSRLNRIEVCDENGTN----RIV----LAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIE 220 (461)
Q Consensus 150 ~p~~iavd~~-~~~ly~~d~~~~~I~~~~~~G~~----~~~----l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~ 220 (461)
....+++.+. .+.+..+-..++.|.+.+..... ... ...........|++.+... +|..+..+....+.
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~ 142 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGV 142 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEE
T ss_pred CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCC--ccceeeccccceEE
Confidence 3556777654 44555566667888877643211 010 0111122346788887755 66665433344555
Q ss_pred EEecCCCCcEEEEecccccceeEEeeccCCeeEEecC
Q psy17325 221 RIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS 257 (461)
Q Consensus 221 ~~~~dG~~~~~i~~~~~~~P~glavD~~~~~ly~~d~ 257 (461)
....+.......+...-.....+++.+....+..+-.
T Consensus 143 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 179 (325)
T d1pgua1 143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179 (325)
T ss_dssp EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE
T ss_pred EEeecccccceeeeecccccccccccccccceEEEee
Confidence 5555533222222222334567888876665555443
|
| >d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.02 E-value=0.014 Score=35.19 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=24.7
Q ss_pred CcccCCCCCCCCCceeC-CCCceEeCC-CCCeecCCCCcee
Q psy17325 31 AECKHKFGLCSNTCHPT-PLGALCTCP-PGEILSNDSVTCQ 69 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~-~~~~~C~C~-~G~~l~~~~~~C~ 69 (461)
++|.+++.+-...|+.. .++|+|.|+ +||. +..|+
T Consensus 2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~----G~~Ce 38 (41)
T d1cvua2 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFY----GENCT 38 (41)
T ss_dssp CTTTTCCCCTTCEEEEEETTEEEEECTTSSEE----TTTTC
T ss_pred CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcC----CcCcC
Confidence 46766654445679875 578999997 6995 66675
|
| >d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Plasminogen activator (tissue-type), t-PA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.021 Score=34.44 Aligned_cols=32 Identities=22% Similarity=0.541 Sum_probs=21.7
Q ss_pred cCCCCCCCCCceeCC--CCceEeCCCCCeecCCCCcee
Q psy17325 34 KHKFGLCSNTCHPTP--LGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 34 ~~~~~~C~~~C~~~~--~~~~C~C~~G~~l~~~~~~C~ 69 (461)
.+++.+-...|+... .+|.|.|++||. |.+|+
T Consensus 2 ~~nPC~ngG~C~~~~~~~~y~C~C~~g~~----G~~Ce 35 (41)
T d1tpga1 2 SEPRCFNGGTCQQALYFSDFVCQCPEGFA----GKSCE 35 (41)
T ss_dssp SSCCSCTTCEEEEESSSSCEEEECCTTCB----SSSCC
T ss_pred cCCCCCCCCEEecCCCCCCeEECCCCCCC----CCCcC
Confidence 334433345687653 578999999995 67775
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=2 Score=37.52 Aligned_cols=80 Identities=6% Similarity=-0.076 Sum_probs=43.9
Q ss_pred eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCC-eEEEe--eCCCCCceeEEEecCCCeEEEEcCCCCe
Q psy17325 315 YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSN-RSTII--STKIYWPNGLTLDIATRRVYFADSKLDF 391 (461)
Q Consensus 315 p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~-~~~l~--~~~l~~p~glaiD~~~~~ly~~d~~~~~ 391 (461)
...+++.|.+..+.++-.. .+.|...++.... ...+. .........|++.+..+.++.+-...+.
T Consensus 162 v~~~~~~~~~~~~~~~~~~------------d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~ 229 (325)
T d1pgua1 162 INACHLKQSRPMRSMTVGD------------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 229 (325)
T ss_dssp EEEEEECSSSSCEEEEEET------------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred cccccccccccceEEEeec------------ccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc
Confidence 5678888777666555433 2233322221111 11111 1122345778888777787777666778
Q ss_pred EEEEEecCCCCeEEEE
Q psy17325 392 IDFCNYDGTGRQQVIL 407 (461)
Q Consensus 392 I~~~~~~g~g~~~~~~ 407 (461)
|...++. ++.....+
T Consensus 230 i~iwd~~-~~~~~~~l 244 (325)
T d1pgua1 230 ISCFDGK-SGEFLKYI 244 (325)
T ss_dssp EEEEETT-TCCEEEEC
T ss_pred eeeeeec-cccccccc
Confidence 8888872 55554433
|
| >d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Factor X, N-terminal module species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.012 Score=35.01 Aligned_cols=32 Identities=34% Similarity=1.040 Sum_probs=23.4
Q ss_pred cceecCCcccC--ceeeccCCccccCCCCeeeeCCCCce
Q psy17325 72 NECEQPGYCSQ--MCTNTKGSYICSCNEGYVLEYDNHTC 108 (461)
Q Consensus 72 ~eC~~~~~C~~--~C~~~~g~~~C~C~~g~~l~~~~~~C 108 (461)
|+|. ..+|.+ .|.+..++|.|.|++||. ++.|
T Consensus 1 D~C~-~~PC~ngg~C~~~~~~y~C~C~~G~~----G~~C 34 (39)
T d1xkba1 1 DQCE-TSPCQNQGKCKDGLGEYTCTCLEGFE----GKNC 34 (39)
T ss_dssp CTTT-TCCCCSSCEECCCSSSCCEECCTTEE----TTTT
T ss_pred CcCC-CCCCCCCcEEECCCCCEEEECCCCCC----cCcC
Confidence 3453 345643 788899999999999994 6666
|
| >d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Neurogenic locus notch homolog protein 1, Notch1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.017 Score=33.49 Aligned_cols=27 Identities=26% Similarity=0.834 Sum_probs=20.6
Q ss_pred ceecCCccc--CceeeccCCccccCCCCee
Q psy17325 73 ECEQPGYCS--QMCTNTKGSYICSCNEGYV 100 (461)
Q Consensus 73 eC~~~~~C~--~~C~~~~g~~~C~C~~g~~ 100 (461)
+|. ..+|. ..|++..++|+|.|++||.
T Consensus 2 ~C~-~~PC~ngg~C~~~~~~y~C~C~~g~~ 30 (35)
T d2vj3a3 2 ECA-SSPCLHNGRCLDKINEFQCECPTGFT 30 (35)
T ss_dssp TTT-TCCSTTTCEEEECSSCEEEECCTTEE
T ss_pred CCC-CCCCCCCcEEECCCCCeEEECCCCCC
Confidence 443 34564 3789999999999999995
|
| >d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Fibrillin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.026 Score=31.93 Aligned_cols=30 Identities=33% Similarity=0.902 Sum_probs=24.2
Q ss_pred cceecCCccc-CceeeccCCccccCCCCeee
Q psy17325 72 NECEQPGYCS-QMCTNTKGSYICSCNEGYVL 101 (461)
Q Consensus 72 ~eC~~~~~C~-~~C~~~~g~~~C~C~~g~~l 101 (461)
+||.-...|. ..|.|..|+|.|.|..||..
T Consensus 2 dECsignpCGnGTCtNviGgFec~C~~GFep 32 (39)
T d1emoa2 2 DECSVGNPCGNGTCKNVIGGFECTCEEGFEP 32 (39)
T ss_dssp CGGGTTCSSSSSCEEECSSSEEECCSSSSCC
T ss_pred CccccCCccCCceeeecccceEEeecCCcCC
Confidence 5676555675 48999999999999999853
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.68 E-value=0.27 Score=45.70 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=65.0
Q ss_pred cCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEee-CCCCCceeEEEecCCCeEEEEcCCC------------
Q psy17325 323 ENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTIIS-TKIYWPNGLTLDIATRRVYFADSKL------------ 389 (461)
Q Consensus 323 ~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-~~l~~p~glaiD~~~~~ly~~d~~~------------ 389 (461)
.+++||++|.. ++||.|.+++--....|+. .+...|.|+.+....+..|+.....
T Consensus 98 DGrylFVNDka------------n~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 98 DGRFLFMNDKA------------NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEEEEEETT------------TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred ceeEEEEEcCC------------CceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 36677777766 9999999999877665553 6788899999977777788764322
Q ss_pred -------CeEEEEEecCCCCeE-EEEEccccceeeccCCCCCcceEEEeeeCCEEEEEeCCCce
Q psy17325 390 -------DFIDFCNYDGTGRQQ-VILIDLMVEFTNDLMGDNGVPALALDLENGMLYYSTEGAEF 445 (461)
Q Consensus 390 -------~~I~~~~~~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lYwtd~~~~~ 445 (461)
+.+..++.+ +.... ++... +.+...+.+.+++++|+|..+++.
T Consensus 166 ~d~~~y~~~~t~ID~~-tm~V~~QV~V~------------g~ld~~~~s~dGK~af~TsyNSE~ 216 (459)
T d1fwxa2 166 EDVANYVNVFTAVDAD-KWEVAWQVLVS------------GNLDNCDADYEGKWAFSTSYNSEK 216 (459)
T ss_dssp TCGG-EEEEEEEEETT-TTEEEEEEEES------------SCCCCEEECSSSSEEEEEESCTTC
T ss_pred cchhhcceEEEEEecC-CceEEEEeeeC------------CChhccccCCCCCEEEEEeccccC
Confidence 223455552 22211 11111 113368899999999999887753
|
| >d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Activated protein c (autoprothrombin IIa) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.026 Score=35.20 Aligned_cols=33 Identities=27% Similarity=0.876 Sum_probs=24.1
Q ss_pred cceecCCcccC-ceeeccCCccccCCCCeeeeCCCCcee
Q psy17325 72 NECEQPGYCSQ-MCTNTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 72 ~eC~~~~~C~~-~C~~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
++|. ...|.+ .|.+..++|.|.|++||. +..|.
T Consensus 9 ~~C~-~~PC~nG~C~~~~~~y~C~C~~G~~----G~~Ce 42 (48)
T d1autl1 9 HPCA-SLCCGHGTCIDGIGSFSCDCRSGWE----GRFCQ 42 (48)
T ss_dssp CSSS-STTTTSEEECCCSSCCCEEECTTEE----STTSC
T ss_pred Cccc-CCCCCCCEEECCCCCCeEeCCCCCc----CCCcc
Confidence 4453 344543 788899999999999995 66773
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.80 E-value=3.3 Score=35.07 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=101.3
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEec-CCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCc
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAK-DNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNR 229 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~-~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~ 229 (461)
+..+++.+.+ ++.++-..++.|.+.++.......... ..-....++++.|. | .++.+. ....+...+..+...
T Consensus 15 V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g--~~~~~~--~d~~v~~~~~~~~~~ 88 (299)
T d1nr0a2 15 ITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-G--DLFTVS--WDDHLKVVPAGGSGV 88 (299)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-S--CEEEEE--TTTEEEEECSSSSSS
T ss_pred cEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-c--eeeccc--ceeeEEEeccCCccc
Confidence 5567777644 444555567889999976544333332 22334678899886 4 466554 234666666655432
Q ss_pred ---EEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCce
Q psy17325 230 ---STIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNA 306 (461)
Q Consensus 230 ---~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~ 306 (461)
..+.......+..+++.+.+..+....... +...+. + ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~------------------------------------i~~~~~-~-~~ 130 (299)
T d1nr0a2 89 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKH------------------------------------IAIYSH-G-KL 130 (299)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSE------------------------------------EEEEET-T-EE
T ss_pred ccccccccccccccccccccccccccccccccc------------------------------------cccccc-c-cc
Confidence 112222334677888876555554443221 222211 1 11
Q ss_pred EEEEeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEE-eeCCCCCceeEEEecCCCeEEEE
Q psy17325 307 SILVSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTI-ISTKIYWPNGLTLDIATRRVYFA 385 (461)
Q Consensus 307 ~~l~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l-~~~~l~~p~glaiD~~~~~ly~~ 385 (461)
..+.....+..+++.|.+..|+.... .+.|...++.+.....+ ....-.....|++++.+..|+.+
T Consensus 131 ~~~~~~~~~~~~~~s~~~~~l~~g~~-------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 197 (299)
T d1nr0a2 131 TEVPISYNSSCVALSNDKQFVAVGGQ-------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 197 (299)
T ss_dssp EEEECSSCEEEEEECTTSCEEEEEET-------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccccccccccc-------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 11111112667788876665554332 34555556654433222 22334457889998766666665
Q ss_pred cCCCCeEEEEEe
Q psy17325 386 DSKLDFIDFCNY 397 (461)
Q Consensus 386 d~~~~~I~~~~~ 397 (461)
+ ..+.|...++
T Consensus 198 ~-~d~~i~~~~~ 208 (299)
T d1nr0a2 198 D-QSRKVIPYSV 208 (299)
T ss_dssp E-TTSCEEEEEG
T ss_pred c-cccccccccc
Confidence 4 4567888777
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.55 E-value=3.5 Score=34.88 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=93.3
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEE---EEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCC
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRI---VLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGS 227 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~---~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~ 227 (461)
...+++.+. +.++.+ ...+.|.+.+..+.... .+.......+..+++.+... .+..+. . ..+...+.. .
T Consensus 58 v~~v~~~~~-g~~~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~--~~i~~~~~~-~ 129 (299)
T d1nr0a2 58 ITGIKTTSK-GDLFTV-SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-Y--KHIAIYSHG-K 129 (299)
T ss_dssp EEEEEECTT-SCEEEE-ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-S--SEEEEEETT-E
T ss_pred EEEEEeecc-ceeecc-cceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-c--ccccccccc-c
Confidence 345666543 345444 34677888776654321 11111224578888887655 555544 2 244433321 1
Q ss_pred CcEEEEecccccceeEEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceE
Q psy17325 228 NRSTIISTKIYWPNGLTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNAS 307 (461)
Q Consensus 228 ~~~~i~~~~~~~P~glavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~ 307 (461)
...+ .....+..+++.+....|+...... .|...++.+....
T Consensus 130 -~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg-----------------------------------~i~~~d~~~~~~~ 171 (299)
T d1nr0a2 130 -LTEV--PISYNSSCVALSNDKQFVAVGGQDS-----------------------------------KVHVYKLSGASVS 171 (299)
T ss_dssp -EEEE--ECSSCEEEEEECTTSCEEEEEETTS-----------------------------------EEEEEEEETTEEE
T ss_pred -cccc--ccccccccccccccccccccccccc-----------------------------------ccccccccccccc
Confidence 1111 1123456778877666665544332 2444444433322
Q ss_pred EE---EeCCeeeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeecCCCeEEEe---eCCCCCceeEEEecCCCe
Q psy17325 308 IL---VSGQLYEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMDGSNRSTII---STKIYWPNGLTLDIATRR 381 (461)
Q Consensus 308 ~l---~~~~~p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~---~~~l~~p~glaiD~~~~~ 381 (461)
.+ .....+..++++|.+..|+.+.. .+.|...++......... ...-.....|++.+.+..
T Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 238 (299)
T d1nr0a2 172 EVKTIVHPAEITSVAFSNNGAFLVATDQ-------------SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238 (299)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEET-------------TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccccccccccc-------------ccccccccccccccccccccccccccccccccccccccc
Confidence 11 11122788999987776665443 234444444322211111 012234577888866555
Q ss_pred EEEEcCCCCeEEEEEec
Q psy17325 382 VYFADSKLDFIDFCNYD 398 (461)
Q Consensus 382 ly~~d~~~~~I~~~~~~ 398 (461)
|+.. ...+.|...++.
T Consensus 239 l~sg-s~dg~i~iwd~~ 254 (299)
T d1nr0a2 239 LATG-SLDNSVIVWNMN 254 (299)
T ss_dssp EEEE-ETTSCEEEEETT
T ss_pred eEEE-cCCCEEEEEECC
Confidence 5544 345678887773
|
| >d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Heregulin-alpha, EGF-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.033 Score=37.08 Aligned_cols=35 Identities=29% Similarity=0.706 Sum_probs=23.1
Q ss_pred cccCCCCCCCCCce-----eCCCCceEeCCCCCeecCCCCceec
Q psy17325 32 ECKHKFGLCSNTCH-----PTPLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 32 ~C~~~~~~C~~~C~-----~~~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
+|..+++.-...|. +..++|.|.|++||. |..|+.
T Consensus 8 ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~----G~~Ce~ 47 (63)
T d1haea_ 8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFT----GARCTE 47 (63)
T ss_dssp HHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEE----STTSCE
T ss_pred CCcCCcCCCCCEEeecccccCCCCEEeECCCCCC----CCCcCC
Confidence 45544433345674 345789999999996 677763
|
| >d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.056 Score=32.23 Aligned_cols=29 Identities=38% Similarity=0.863 Sum_probs=22.1
Q ss_pred Cccc--CceeeccCCccccCCCCeeeeCCCCceee
Q psy17325 78 GYCS--QMCTNTKGSYICSCNEGYVLEYDNHTCKA 110 (461)
Q Consensus 78 ~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C~~ 110 (461)
.+|. ..|++..++|.|.|++||. +..|..
T Consensus 7 ~pC~ngg~C~~~~~~y~C~C~~g~~----G~~Ce~ 37 (40)
T d1g1sa2 7 MSCSKQGECLETIGNYTCSCYPGFY----GPECEY 37 (40)
T ss_dssp TGGGGSEEEEECSSSEEEEECTTEE----STTSCE
T ss_pred CcCCCCcEEECCCCCeEEeCCCCcc----CCCCCC
Confidence 3554 3788999999999999994 566743
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=5.7 Score=34.79 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=54.3
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
...+++.+. +++.++-..++.|.+.+...................+++.+... .++.+. ....|...++......
T Consensus 124 V~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~--~~~~i~~~d~~~~~~~ 198 (388)
T d1erja_ 124 IRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD--KLVSGS--GDRTVRIWDLRTGQCS 198 (388)
T ss_dssp EEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEE--TTSEEEEEETTTTEEE
T ss_pred EEEEEECCC-CCcceecccccccccccccccccccccccccccccccccccccc--cccccc--cceeeeeeeccccccc
Confidence 455677653 44555556678888888766554444444334567788887755 666655 2345666666543322
Q ss_pred EEEecccccceeEEeeccCCeeEEe
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFA 255 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~ 255 (461)
.... ....+..+++.+..++++.+
T Consensus 199 ~~~~-~~~~~~~~~~~~~~~~~l~~ 222 (388)
T d1erja_ 199 LTLS-IEDGVTTVAVSPGDGKYIAA 222 (388)
T ss_dssp EEEE-CSSCEEEEEECSTTCCEEEE
T ss_pred cccc-cccccccccccCCCCCeEEE
Confidence 2221 22234445554444444443
|
| >d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.01 E-value=0.14 Score=32.57 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=18.6
Q ss_pred CCceeC--CCCceEeCCCCCeecCCCCceec
Q psy17325 42 NTCHPT--PLGALCTCPPGEILSNDSVTCQD 70 (461)
Q Consensus 42 ~~C~~~--~~~~~C~C~~G~~l~~~~~~C~d 70 (461)
..|... ..+|+|.|++||. |..|+.
T Consensus 18 G~C~~~~~~~~~~C~C~~gy~----G~~Ce~ 44 (53)
T d3egfa_ 18 GVCMHIESLDSYTCNCVIGYS----GDRCQT 44 (53)
T ss_dssp CEEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred cEeeccCCCCCeEeECCCCCc----CCCCcc
Confidence 468643 3579999999995 677864
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.50 E-value=8.1 Score=35.78 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=50.9
Q ss_pred eeeEEeCCCCceEEEEeCCe-------eeeEEEeccCCeEEEeecCceeeEEEeecCCCCceEEEeec-------CCCeE
Q psy17325 295 KIGKANMDGSNASILVSGQL-------YEALALDLENGMLYYSTLKCTRWLFWTDWGENPRIERIGMD-------GSNRS 360 (461)
Q Consensus 295 ~I~~~~~~g~~~~~l~~~~~-------p~~iavd~~~~~lY~t~~~~~~~l~~~d~~~~~~I~~~~~d-------G~~~~ 360 (461)
.|..++......+++..+.- .....+.+.++.++ |++.++.+....++...+. |...+
T Consensus 281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~--------fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~ 352 (465)
T d1xfda1 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF--------FIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ 352 (465)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE--------EEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE--------EEEeeeecccCceEEEEeccccccCCCceeE
Confidence 45666665555555543211 12234444444443 2333444445667766543 22222
Q ss_pred EEeeCCCCC-cee-EEEecCCCeEEEEc----CCCCeEEEEEecCCC
Q psy17325 361 TIISTKIYW-PNG-LTLDIATRRVYFAD----SKLDFIDFCNYDGTG 401 (461)
Q Consensus 361 ~l~~~~l~~-p~g-laiD~~~~~ly~~d----~~~~~I~~~~~~g~g 401 (461)
.|. .+ .| ... +++|..++.||++- +....+++++++|.+
T Consensus 353 ~LT-~G-~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~ 397 (465)
T d1xfda1 353 SIT-SG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (465)
T ss_dssp BSC-CS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred Eec-cC-CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC
Confidence 222 21 22 123 57999999999973 345579999996543
|
| >d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: E-selectin, EGF-domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.061 Score=31.86 Aligned_cols=28 Identities=32% Similarity=0.902 Sum_probs=21.7
Q ss_pred Cccc--CceeeccCCccccCCCCeeeeCCCCcee
Q psy17325 78 GYCS--QMCTNTKGSYICSCNEGYVLEYDNHTCK 109 (461)
Q Consensus 78 ~~C~--~~C~~~~g~~~C~C~~g~~l~~~~~~C~ 109 (461)
.+|. ..|.+..++|.|.|++||. +..|.
T Consensus 7 ~pC~ngg~C~~~~~~~~C~C~~g~~----G~~Ce 36 (39)
T d1g1ta2 7 TSCSGHGECVETINNYTCKCDPGFS----GLKCE 36 (39)
T ss_dssp TGGGGSEEEEEETTEEEEEECTTEE----STTSC
T ss_pred CcCCCCcEEECCCCCEEEeCCCCCc----CcCcC
Confidence 4564 3788999999999999995 55663
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=88.79 E-value=8.2 Score=34.92 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=60.8
Q ss_pred cceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecC------CCCCceeEEEcCCCCceEEEEeecC----CCCc
Q psy17325 149 DLVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKD------NITQPRGMMLDPSPGTRWLFWTDWG----ENPR 218 (461)
Q Consensus 149 ~~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~------~~~~p~~ia~d~~~g~~~ly~td~~----~~~~ 218 (461)
....+||+++...++.++-...+.+.+..-.|..=+.+... ......+||+||.+. +.||+.-.. ....
T Consensus 12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np-~~vy~~tg~~~~~~~~g 90 (427)
T d2ebsa1 12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP-DRLYLAQGRYVGDEWAA 90 (427)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE-EEEEEEECSCTTSSCCE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCC-CEEEEEeccccCCcCcc
Confidence 35678999987666555555556788877666655444321 122356899999853 267765311 1245
Q ss_pred EEEEecCCCCcEEEEecc--------cccceeEEeeccCCe-eEEec
Q psy17325 219 IERIGMDGSNRSTIISTK--------IYWPNGLTLDIATRR-VYFAD 256 (461)
Q Consensus 219 I~~~~~dG~~~~~i~~~~--------~~~P~glavD~~~~~-ly~~d 256 (461)
|++..=.|...+.+.... ......|+||+.+.. ||++.
T Consensus 91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~ 137 (427)
T d2ebsa1 91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT 137 (427)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC
T ss_pred EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc
Confidence 766555565555443221 112345889887544 45443
|
| >d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.64 E-value=0.19 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=22.1
Q ss_pred CcccCCCCCCCCCceeCC-CCceEeCCCCCeec
Q psy17325 31 AECKHKFGLCSNTCHPTP-LGALCTCPPGEILS 62 (461)
Q Consensus 31 ~~C~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~ 62 (461)
++|... .|.+.|.... ++|.|.|..||...
T Consensus 5 DPCf~~--~CE~qCqP~~~~~Y~CiCaeGFaP~ 35 (43)
T d1dx5i1 5 DPCFRA--NCEYQCQPLDQTSYLCVCAEGFAPI 35 (43)
T ss_dssp CGGGGC--CCSSEEEECSSSCEEEECCTTEEEE
T ss_pred ccccCC--CcceeeeeCCCCcceEEeccccccC
Confidence 466543 4888887764 68999999999653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.09 E-value=9.5 Score=34.79 Aligned_cols=60 Identities=8% Similarity=0.043 Sum_probs=38.3
Q ss_pred EEEeecCCCCceEEEeecCCCeEEEeeCCCCCceeEEEecCCCeEEEEcC------CCCeEEEEEecC
Q psy17325 338 LFWTDWGENPRIERIGMDGSNRSTIISTKIYWPNGLTLDIATRRVYFADS------KLDFIDFCNYDG 399 (461)
Q Consensus 338 l~~~d~~~~~~I~~~~~dG~~~~~l~~~~l~~p~glaiD~~~~~ly~~d~------~~~~I~~~~~~g 399 (461)
++.++.....+|+..+.+|.....+. .+-....++ +..+++.||++-. ....|++++++|
T Consensus 335 ~~~s~~dg~~~ly~~~~~g~~~~~lt-~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g 400 (470)
T d2bgra1 335 KIISNEEGYRHICYFQIDKKDCTFIT-KGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSD 400 (470)
T ss_dssp EEEECTTSCEEEEEEETTCSCCEESC-CSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred EEEeccCcCceeEEEeccCCceeeec-cCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCC
Confidence 33444455677999999998877665 333334444 3346788988632 233599999953
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=87.26 E-value=5.6 Score=36.15 Aligned_cols=160 Identities=15% Similarity=0.085 Sum_probs=83.2
Q ss_pred CCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcEEEEec------ccccceeEEeeccC-CeeEEecCCCceeee
Q psy17325 192 TQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRSTIIST------KIYWPNGLTLDIAT-RRVYFADSKLDFIDC 264 (461)
Q Consensus 192 ~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~~i~~~------~~~~P~glavD~~~-~~ly~~d~~~~~i~~ 264 (461)
....+||+||.+. +.||..- ....++|..-.|...+.+... .......||||+.+ ++||++-.....
T Consensus 12 g~~~~i~~~P~~~-~~~ya~~--~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~--- 85 (427)
T d2ebsa1 12 GYITGIVAHPKTK-DLLYART--DIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG--- 85 (427)
T ss_dssp SCEEEEEECSSST-TCEEEEE--SSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT---
T ss_pred CcEEEEEECCCCC-CEEEEEe--cCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccC---
Confidence 4578999999854 3677643 335688876556655544321 12245689999876 455554321100
Q ss_pred cccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe----------eeeEEEeccCC-eEEEeecC
Q psy17325 265 KSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL----------YEALALDLENG-MLYYSTLK 333 (461)
Q Consensus 265 ~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~----------p~~iavd~~~~-~lY~t~~~ 333 (461)
+....|++..-.|..-+.+..... ...|++||.+. .||++..
T Consensus 86 --------------------------~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~- 138 (427)
T d2ebsa1 86 --------------------------DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR- 138 (427)
T ss_dssp --------------------------SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECS-
T ss_pred --------------------------CcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccc-
Confidence 000235544333443333321110 34699999754 4555422
Q ss_pred ceeeEEEeecCCCCceEEEeecCCCeEEEee-----CCCCCceeEEEecCC-CeEEEEcCCCCeEEEEE
Q psy17325 334 CTRWLFWTDWGENPRIERIGMDGSNRSTIIS-----TKIYWPNGLTLDIAT-RRVYFADSKLDFIDFCN 396 (461)
Q Consensus 334 ~~~~l~~~d~~~~~~I~~~~~dG~~~~~l~~-----~~l~~p~glaiD~~~-~~ly~~d~~~~~I~~~~ 396 (461)
...|+|..=.|..-+.+.. ........|++|+.+ +.||.+-...+.|++..
T Consensus 139 ------------~~gl~~S~D~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~S~ 195 (427)
T d2ebsa1 139 ------------TEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYVTH 195 (427)
T ss_dssp ------------SSCEEEESSTTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEEES
T ss_pred ------------ccceeeecCCCceeeecccCcccccCCccceEEEecccccceeeeeeeecccceecc
Confidence 2346665544544443321 111123458888754 56887655556676644
|
| >d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Epidermal growth factor, EGF species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.75 E-value=0.14 Score=31.81 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=17.6
Q ss_pred CCceeC--CCCceEeCCCCCeecCCCCcee
Q psy17325 42 NTCHPT--PLGALCTCPPGEILSNDSVTCQ 69 (461)
Q Consensus 42 ~~C~~~--~~~~~C~C~~G~~l~~~~~~C~ 69 (461)
..|... ..+|.|.|++||. |..|+
T Consensus 16 G~C~~~~~~~~~~C~C~~gy~----G~~Ce 41 (48)
T d1nqlb_ 16 GVCMYIEALDKYACNCVVGYI----GERCQ 41 (48)
T ss_dssp CEEEEETTTTEEEEEECTTEE----STTSC
T ss_pred cEEeeeCCCCCeEEeCCCCcc----cCCCC
Confidence 468653 3578999999996 56776
|
| >d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Thrombomodulin, different EGF-like domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.64 E-value=0.17 Score=27.88 Aligned_cols=13 Identities=54% Similarity=1.150 Sum_probs=9.8
Q ss_pred ceEeCCCCCeecC
Q psy17325 51 ALCTCPPGEILSN 63 (461)
Q Consensus 51 ~~C~C~~G~~l~~ 63 (461)
..|.||.||.|..
T Consensus 18 ~~C~CPeGyIlde 30 (35)
T d1dx5i2 18 ASCECPEGYILDD 30 (35)
T ss_dssp TCEECCTTEEEET
T ss_pred CcccCCCceEecc
Confidence 3689999998743
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.53 E-value=9.6 Score=31.45 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=53.0
Q ss_pred eeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecCCCCcE
Q psy17325 151 VEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMDGSNRS 230 (461)
Q Consensus 151 p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~dG~~~~ 230 (461)
+..|++.+. +++.++-..++.|.+.++........+.........+++++... .+.... . ...+...........
T Consensus 20 I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 20 VTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK--LLASCS-A-DMTIKLWDFQGFECI 94 (317)
T ss_dssp EEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS--EEEEEE-T-TSCCCEEETTSSCEE
T ss_pred eEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccc--cccccc-c-ccccccccccccccc
Confidence 455666653 45555656678899998664333333333334577889988755 555544 2 233333333332222
Q ss_pred EEEecccccceeEEeeccCCeeEEec
Q psy17325 231 TIISTKIYWPNGLTLDIATRRVYFAD 256 (461)
Q Consensus 231 ~i~~~~~~~P~glavD~~~~~ly~~d 256 (461)
............+.+.+.+..|....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (317)
T d1vyhc1 95 RTMHGHDHNVSSVSIMPNGDHIVSAS 120 (317)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred cccccccccceeeeccCCCceEEeec
Confidence 22222233445566665555554443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.27 E-value=12 Score=31.49 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=43.7
Q ss_pred ceeeeeeeecCCeEEEEeCCCCeEEEEeCCCCcEEEEecCCCCCceeEEEcCCCCceEEEEeecCCCCcEEEEecC
Q psy17325 150 LVEGLAYDWIGGHIYWLDSRLNRIEVCDENGTNRIVLAKDNITQPRGMMLDPSPGTRWLFWTDWGENPRIERIGMD 225 (461)
Q Consensus 150 ~p~~iavd~~~~~ly~~d~~~~~I~~~~~~G~~~~~l~~~~~~~p~~ia~d~~~g~~~ly~td~~~~~~I~~~~~d 225 (461)
.+.+|++.+ .+.+..+-..++.|.+.+.........+...-.....+++.|... +++.+. ....|......
T Consensus 57 ~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~--~d~~i~~~~~~ 127 (340)
T d1tbga_ 57 KIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN--YVACGG--LDNICSIYNLK 127 (340)
T ss_dssp CEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS--EEEEEE--TTCCEEEEESS
T ss_pred CEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce--eeeeec--ccceeeccccc
Confidence 456677775 444555666678999999765544433433334578899998866 666655 23344444433
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.26 E-value=11 Score=34.77 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=63.4
Q ss_pred eEEEEeCCCCcEEEEecCC----CC-CceeEEEcCCCCceEEEE---eecCCCCcEEEEecC-------CCCcEEEEecc
Q psy17325 172 RIEVCDENGTNRIVLAKDN----IT-QPRGMMLDPSPGTRWLFW---TDWGENPRIERIGMD-------GSNRSTIISTK 236 (461)
Q Consensus 172 ~I~~~~~~G~~~~~l~~~~----~~-~p~~ia~d~~~g~~~ly~---td~~~~~~I~~~~~d-------G~~~~~i~~~~ 236 (461)
.|.+++......+.+..+. +. ......+.+..+ .++| ++......++.+.+. |...+.|- .+
T Consensus 281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~--~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT-~G 357 (465)
T d1xfda1 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR--KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-SG 357 (465)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC--SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-CS
T ss_pred eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCC--eeEEEEeeeecccCceEEEEeccccccCCCceeEEec-cC
Confidence 4666776655555554321 11 112345555544 4433 332334667766543 22222221 11
Q ss_pred ccccee-EEeeccCCeeEEecCCCceeeecccceeeeeccceeeeEEEEEecCCCCcceeeeEEeCCCCceEEEEeCCe-
Q psy17325 237 IYWPNG-LTLDIATRRVYFADSKLDFIDCKSLEIKTNVNYSTIFRKLYWIDEGGNGVPLKIGKANMDGSNASILVSGQL- 314 (461)
Q Consensus 237 ~~~P~g-lavD~~~~~ly~~d~~~~~i~~~~~~~~~~v~~~~~~~~~yw~d~~~~~~~~~I~~~~~~g~~~~~l~~~~~- 314 (461)
-..... +++|..++.|||+-...+..+ ..+++++++|+....++...+
T Consensus 358 ~w~V~~i~~~d~~~~~vyF~a~~~~p~~------------------------------~hly~v~l~g~~~~~~lt~~~~ 407 (465)
T d1xfda1 358 DWDVTKILAYDEKGNKIYFLSTEDLPRR------------------------------RQLYSANTVGNFNRQCLSCDLV 407 (465)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTC------------------------------CEEEEECSSTTCCCBCSSTTSS
T ss_pred CceEEEEEEEcCCCCEEEEEEeCCCCCc------------------------------eEEEEEECCCCCcceeeccccC
Confidence 111122 578999999998755432211 247888888876554443222
Q ss_pred ----eeeEEEeccCCeEE
Q psy17325 315 ----YEALALDLENGMLY 328 (461)
Q Consensus 315 ----p~~iavd~~~~~lY 328 (461)
-+.++++|.++++.
T Consensus 408 ~~~~~~~~~~S~~~~y~v 425 (465)
T d1xfda1 408 ENCTYFSASFSHSMDFFL 425 (465)
T ss_dssp SSCCCCEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCCEEE
Confidence 45777887666543
|
| >d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Knottins (small inhibitors, toxins, lectins) superfamily: EGF/Laminin family: EGF-type module domain: Prostaglandin H2 synthase-1, EGF-like module species: Sheep (Ovis aries) [TaxId: 9940]
Probab=82.10 E-value=0.25 Score=29.57 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=22.6
Q ss_pred CcceecCCccc--Cceeec-cCCccccCCC-CeeeeCCCCcee
Q psy17325 71 MNECEQPGYCS--QMCTNT-KGSYICSCNE-GYVLEYDNHTCK 109 (461)
Q Consensus 71 ~~eC~~~~~C~--~~C~~~-~g~~~C~C~~-g~~l~~~~~~C~ 109 (461)
+++|. ...|. ..|++. .++|.|.|+. ||. +..|.
T Consensus 2 id~C~-~nPC~ngG~C~~~~~~~y~C~C~~~G~~----G~~Ce 39 (42)
T d1q4ga2 2 VNPCC-YYPCQHQGICVRFGLDRYQCDCTRTGYS----GPNCT 39 (42)
T ss_dssp CCGGG-GCCCCTTCEEEEETTTEEEEECTTSSEE----TTTTC
T ss_pred CccCc-CCCCCCCCEeeeCCCCCEEEECCCCCcC----CcCcC
Confidence 45564 34564 378765 5789999986 894 56663
|