Psyllid ID: psy17361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MKKRTLTAKKKKIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Secondary Structure (PSIPRED)
cccccHHHHHccccHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHEEEcccccccHHHHHHHHHHHHHHHcHHHHccccEEccccccccccccHHHHHHHHHHcccccccEEEEcccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MKKRTLTAKKKKIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARlsqdgmggvkWDYIHGLlgnaiyggridnaqDMKVLSSYLQFYFssnvaktastplapgvvlpsstnlgtpddwqsiwsgsgnpllYIRSVVSRAVTVHKCyqvsstywrspvdlsglfhpHAFLSVLKQHTAR
Flexible Loop (DISEMBL)
mkkrtltakkkkirfagikrnlqrtyaswsqtklnstdQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Low Complexity Region (SEG)
MkkrtltakkkkIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDlnaalnilnaRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Disordered region (IsUnstruct)
************IRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVL******
Disordered Region (DISOPRED)
*KKRTLTAKKKKIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQH***
Disordered Region (DISEMBL)
*********KKKIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Disordered Region (DISPRO)
*KKRTLTAKKKKIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQ****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKRTLTAKKKKIRFAGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q8NCM8	4307	Cytoplasmic dynein 2 heav	yes	N/A	0.525	0.026	0.558	1e-33
Q45VK7	4306	Cytoplasmic dynein 2 heav	yes	N/A	0.525	0.026	0.516	5e-32
Q9JJ79	4306	Cytoplasmic dynein 2 heav	yes	N/A	0.525	0.026	0.516	8e-32
Q27802	4318	Cytoplasmic dynein 2 heav	N/A	N/A	0.529	0.026	0.516	2e-29
Q9SMH5	4334	Cytoplasmic dynein 2 heav	N/A	N/A	0.712	0.035	0.423	8e-28
Q19542	4171	Cytoplasmic dynein 2 heav	yes	N/A	0.602	0.031	0.413	3e-23
P34036	4730	Dynein heavy chain, cytop	yes	N/A	0.611	0.028	0.404	2e-22
P37276	4639	Dynein heavy chain, cytop	yes	N/A	0.525	0.024	0.419	4e-22
Q9JHU4	4644	Cytoplasmic dynein 1 heav	no	N/A	0.525	0.024	0.362	2e-19
Q14204	4646	Cytoplasmic dynein 1 heav	no	N/A	0.525	0.024	0.362	2e-19

>sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens GN=DYNC2H1 PE=1 SV=4

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 88/120 (73%), Gaps = 5/120 (4%)

Query: 17   GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3835 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3894

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3895 DLRAGYNIIDRLF--DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 3952

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.
Homo sapiens (taxid: 9606)

>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 88/120 (73%), Gaps = 5/120 (4%)

Query: 17   GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3834 GLKKNLMRTYESWTPEQISKRDNIHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3893

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  ++++     DG   V+W+++HGLL N+IYGGR+DN  D++VL SYL+ +F+S++
Sbjct: 3894 DLRAGYHVIDRLF--DGTKDVQWEFVHGLLENSIYGGRVDNYFDLRVLQSYLKQFFNSSI 3951

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. According to PubMed:8666668, it may play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Mus musculus (taxid: 10090)

>sp|Q9JJ79|DYHC2_RAT Cytoplasmic dynein 2 heavy chain 1 OS=Rattus norvegicus GN=Dync2h1 PE=1 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 88/120 (73%), Gaps = 5/120 (4%)

Query: 17   GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct: 3834 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 3893

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  ++++     DG   V+W+++HGLL N+IYGGRIDN  D++VL SYL+ +F+S++
Sbjct: 3894 DLRAGYHVIDRLF--DGSKDVQWEFVHGLLENSIYGGRIDNYFDLRVLQSYLKQFFNSSI 3951

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Rattus norvegicus (taxid: 10116)

>sp|Q27802|DYHC2_TRIGR Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla GN=DYH1B PE=2 SV=2

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 84/120 (70%), Gaps = 4/120 (3%)

Query: 17   GIKRNLQRTYASWSQT---KLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            GIK+NL R+Y SW+     + N+  + +ALF LAWFHA+ QERR +IPQGW KFYEF+ S
Sbjct: 3844 GIKKNLLRSYDSWTPEFIGRENNVVRAQALFALAWFHAICQERRNFIPQGWTKFYEFSMS 3903

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  +I++ RL       V++++I+GL  NAIYGGR+DN  DM+VL SYL  YF+  +
Sbjct: 3904 DLRAGADIID-RLCHGKGKEVQFEFIYGLFENAIYGGRVDNPFDMRVLRSYLAQYFNKEM 3962

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.

Tripneustes gratilla (taxid: 7673)

>sp|Q9SMH5|DYHC2_CHLRE Cytoplasmic dynein 2 heavy chain 1 OS=Chlamydomonas reinhardtii GN=DHC1B PE=1 SV=2

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 14/170 (8%)

Query: 5    TLTAKKKKIRFA---GIKRNLQRTYASWSQTKLNSTDQGRA--LFTLAWFHALIQERRTY 59
            TL     K+ F    G+K+NLQRTY +WS   L S    RA  LF LAWFHA++QERRTY
Sbjct: 3833 TLLEMSLKVTFEAPPGMKKNLQRTYEAWSAEYLASGPPIRAQLLFVLAWFHAVVQERRTY 3892

Query: 60   IPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMK 119
            IPQGW KFYEF+ +DL + ++++   L+       +W  + GLL +AIYGGR+DN  D +
Sbjct: 3893 IPQGWTKFYEFSFADLRSGMDVIT--LATRAGTAPQWPLLLGLLDDAIYGGRLDNPFDSQ 3950

Query: 120  VLSSYLQFYFSSNVAKTASTPLAP----GVVLPSSTNLGTPDDWQSIWSG 165
            VL ++L+  FS+     A   + P     VV+P++ +     D+ SI S 
Sbjct: 3951 VLLTFLRRLFSAETVGAAGGKVRPLPGSKVVVPTTNHRA---DYVSIISA 3997

May function as a motor for intraflagellar retrograde transport. Functions in flagellar biogenesis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q19542|DYHC2_CAEEL Cytoplasmic dynein 2 heavy chain 1 OS=Caenorhabditis elegans GN=che-3 PE=3 SV=2

 Score =  108 bits (270), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 6/138 (4%)

Query: 17   GIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLN 76
            G++ NL RTY    ++  N     +++F LAW HAL+QERRT+IPQGW KFYEF  SD+ 
Sbjct: 3718 GVRNNLLRTYTQIDRSTKNVI-TCQSIFVLAWLHALLQERRTFIPQGWTKFYEFGASDVR 3776

Query: 77   AALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYF-SSNVAK 135
             A     + + Q       W+++ G+L   IYGGRI+N  D KVL SYL   F    +  
Sbjct: 3777 VA----KSFVEQLTANKADWEFVRGILKFVIYGGRIENDFDFKVLDSYLNVLFCDEKING 3832

Query: 136  TASTPLAPGVVLPSSTNL 153
             A + L  G+ L ++TN+
Sbjct: 3833 RAGSQLVKGIDLLATTNV 3850

Function as a motor for intraflagellar retrograde transport in chemosensory neurons. Functions in cilia biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|P34036|DYHC_DICDI Dynein heavy chain, cytoplasmic OS=Dictyostelium discoideum GN=dhcA PE=1 SV=2

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 84/146 (57%), Gaps = 12/146 (8%)

Query: 17   GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K NL  T+     T+++    ++ R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 4243 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 4302

Query: 75   LNAALNILN--ARLSQDGMGGVK-----WDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
            L  AL+ ++    L   G   +      W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 4303 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 4362

Query: 128  YFSSNVAKTASTPLAP--GVVLPSST 151
             F+ + A     PL P  G+ +P  T
Sbjct: 4363 LFTPS-AFNPDFPLVPSIGLSVPEGT 4387

Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Dictyostelium discoideum (taxid: 44689)

>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C PE=2 SV=2

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 9/124 (7%)

Query: 17   GIKRNLQRTYASWSQTKLNST--DQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            GI+ NL RT+++    ++  T  ++ R  F LAWFHA++QER  Y+P GWAK YEFN+SD
Sbjct: 4136 GIRANLLRTFSTVPAARMMKTPSERARLYFLLAWFHAIVQERLRYVPLGWAKKYEFNESD 4195

Query: 75   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
            L  A + L+  +    MG        V WD +  LL  +IYGG+IDN  D ++L+S+L+ 
Sbjct: 4196 LRVACDTLDTWIDTTAMGRTNLPPEKVPWDALVTLLSQSIYGGKIDNDFDQRLLTSFLKK 4255

Query: 128  YFSS 131
             F++
Sbjct: 4256 LFTA 4259

Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Drosophila melanogaster (taxid: 7227)

>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1 SV=2

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 17   GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K N+ RT++S   +++  +  ++ R  F LAWFHA+IQER  Y P GW+K YEF +SD
Sbjct: 4150 GVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLGWSKKYEFGESD 4209

Query: 75   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
            L +A + ++  L     G        + W  +  L+  +IYGGR+DN  D ++L+++L+ 
Sbjct: 4210 LRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLER 4269

Query: 128  YFSS 131
             F++
Sbjct: 4270 LFTT 4273

Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Mus musculus (taxid: 10090)

>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 17   GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K N+ RT++S   +++  +  ++ R  F LAWFHA+IQER  Y P GW+K YEF +SD
Sbjct: 4152 GVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLGWSKKYEFGESD 4211

Query: 75   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
            L +A + ++  L     G        + W  +  L+  +IYGGR+DN  D ++L+++L+ 
Sbjct: 4212 LRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLER 4271

Query: 128  YFSS 131
             F++
Sbjct: 4272 LFTT 4275

Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
196001173	4324	hypothetical protein TRIADDRAFT_22099 [T	0.789	0.040	0.440	3e-35
118378437	4286	Dynein heavy chain family protein [Tetra	0.630	0.032	0.496	7e-34
54660021	4236	cytoplasmic dynein heavy chain 2 protein	0.630	0.032	0.496	7e-34
449692566	504	PREDICTED: cytoplasmic dynein 2 heavy ch	0.621	0.269	0.492	3e-33
291383985	4306	PREDICTED: dynein, cytoplasmic 2, heavy	0.525	0.026	0.558	1e-32
291383983	4313	PREDICTED: dynein, cytoplasmic 2, heavy	0.525	0.026	0.558	2e-32
29421212	1685	KIAA1997 protein [Homo sapiens]	0.525	0.068	0.566	2e-32
156378247	4294	predicted protein [Nematostella vectensi	0.534	0.027	0.558	2e-32
149633267	4391	PREDICTED: cytoplasmic dynein 2 heavy ch	0.616	0.030	0.489	3e-32
47077421	1300	unnamed protein product [Homo sapiens]	0.525	0.088	0.566	3e-32

>gi|196001173|ref|XP_002110454.1| hypothetical protein TRIADDRAFT_22099 [Trichoplax adhaerens] gi|190586405|gb|EDV26458.1| hypothetical protein TRIADDRAFT_22099 [Trichoplax adhaerens]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 111/184 (60%), Gaps = 11/184 (5%)

Query: 17   GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+KRNLQRT  SWS     K NS  + +ALFT AWFHA++QERR+YIPQGW+KFYEF+ S
Sbjct: 3850 GVKRNLQRTLESWSTDFFQKSNSPIRAQALFTAAWFHAIVQERRSYIPQGWSKFYEFSRS 3909

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL  A  ++   L + G   VKW+++HGLL NA+YGGRIDN  D++VL SYL   F+ +V
Sbjct: 3910 DLRCAAEVIERVLKKSGNDSVKWEFVHGLLENAVYGGRIDNPFDIRVLESYLHQCFNKSV 3969

Query: 134  AKTAS---TPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLY-----IRSVVSRAVTVHK 185
                S    PL     +P S++     D  S+ S +  P L+     I   + R+++   
Sbjct: 3970 IGGQSGRRKPLTNNFSMPQSSHYQDYMDMISLLSDNDQPSLFGLPANIERSIQRSISTQV 4029

Query: 186  CYQV 189
              Q+
Sbjct: 4030 ISQL 4033

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|118378437|ref|XP_001022394.1| Dynein heavy chain family protein [Tetrahymena thermophila] gi|89304161|gb|EAS02149.1| Dynein heavy chain family protein [Tetrahymena thermophila SB210]

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/143 (49%), Positives = 96/143 (67%), Gaps = 5/143 (3%)

Query: 17   GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K+N++R Y+SWS   +   S  + + LF LAWFHA++QERRTYIPQGW+KFYEF+  D
Sbjct: 3817 GLKKNVERIYSSWSPQYIAKGSAQRAQLLFLLAWFHAILQERRTYIPQGWSKFYEFSYGD 3876

Query: 75   LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 134
            L A   I+   +      G+ W+ ++GL  NAIYGGRID A DM+VL SY++ YF++N+ 
Sbjct: 3877 LRAGTQIIEGLVQDTQQKGISWETLYGLFENAIYGGRIDEAFDMRVLRSYIELYFNNNIL 3936

Query: 135  KTASTPLAPGVVLPSSTNLGTPD 157
            K  S  +  G  LP STNL  PD
Sbjct: 3937 K-GSARIPTGDTLPQSTNL--PD 3956

Source: Tetrahymena thermophila

Species: Tetrahymena thermophila

Genus: Tetrahymena

Family: Tetrahymenidae

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|54660021|gb|AAV37189.1| cytoplasmic dynein heavy chain 2 protein [Tetrahymena thermophila]

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/143 (49%), Positives = 96/143 (67%), Gaps = 5/143 (3%)

Query: 17   GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K+N++R Y+SWS   +   S  + + LF LAWFHA++QERRTYIPQGW+KFYEF+  D
Sbjct: 3767 GLKKNVERIYSSWSPQYIAKGSAQRAQLLFLLAWFHAILQERRTYIPQGWSKFYEFSYGD 3826

Query: 75   LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 134
            L A   I+   +      G+ W+ ++GL  NAIYGGRID A DM+VL SY++ YF++N+ 
Sbjct: 3827 LRAGTQIIEGLVQDTQQKGISWETLYGLFENAIYGGRIDEAFDMRVLRSYIELYFNNNIL 3886

Query: 135  KTASTPLAPGVVLPSSTNLGTPD 157
            K  S  +  G  LP STNL  PD
Sbjct: 3887 K-GSARIPTGDTLPQSTNL--PD 3906

Source: Tetrahymena thermophila

Species: Tetrahymena thermophila

Genus: Tetrahymena

Family: Tetrahymenidae

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|449692566|ref|XP_004213086.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like, partial [Hydra magnipapillata]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 96/140 (68%), Gaps = 4/140 (2%)

Query: 17  GIKRNLQRTYASWSQTKLN-STDQGRA--LFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
           GIK+N+QR++ SW+      ST+  R   LF LAWFHAL++ERR +IPQGW KFYEF+ +
Sbjct: 83  GIKKNMQRSFESWTPNFFQQSTNNSRCYTLFALAWFHALVEERRNFIPQGWTKFYEFSMA 142

Query: 74  DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
           DL A  +I++    + G   + WD++HGL  NAIYGGR+DN  D++VLSSYL  YFS  +
Sbjct: 143 DLRAGADIVDRLFKKAGNKSISWDFLHGLFENAIYGGRVDNNFDVRVLSSYLHMYFSDKL 202

Query: 134 AKTASTPLAPG-VVLPSSTN 152
             +++  L P  V LP++TN
Sbjct: 203 TSSSNKTLFPASVSLPATTN 222

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|291383985|ref|XP_002708585.1| PREDICTED: dynein, cytoplasmic 2, heavy chain 1 isoform 2 [Oryctolagus cuniculus]

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 17   GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+  ++N  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3834 GLKKNLMRTYESWTPEQINKKDNILRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 3893

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3894 DLRAGYNIIDRLF--DGTKDVQWEFVHGLLENAIYGGRIDNCFDLRVLQSYLKQFFNSSV 3951

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291383983|ref|XP_002708584.1| PREDICTED: dynein, cytoplasmic 2, heavy chain 1 isoform 1 [Oryctolagus cuniculus]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 17   GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+  ++N  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3841 GLKKNLMRTYESWTPEQINKKDNILRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 3900

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3901 DLRAGYNIIDRLF--DGTKDVQWEFVHGLLENAIYGGRIDNCFDLRVLQSYLKQFFNSSV 3958

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|29421212|dbj|BAC02706.2| KIAA1997 protein [Homo sapiens]

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/120 (56%), Positives = 89/120 (74%), Gaps = 5/120 (4%)

Query: 17   GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 1213 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 1272

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 1273 DLRAGYNIIDRLF--DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 1330

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156378247|ref|XP_001631055.1| predicted protein [Nematostella vectensis] gi|156218088|gb|EDO38992.1| predicted protein [Nematostella vectensis]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 83/120 (69%), Gaps = 3/120 (2%)

Query: 17   GIKRNLQRTYASWSQT---KLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            GIK+N+ RTY SWS     + N++ + +ALF L+WFHA++QERR YIPQGW KFYEF+  
Sbjct: 3854 GIKKNMLRTYDSWSPEFVQRGNNSTRAQALFVLSWFHAIMQERRNYIPQGWTKFYEFSFG 3913

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A   I++   S  G G V+W ++HGL  NAIYGGRIDN  DMKVL SYL  YF   V
Sbjct: 3914 DLRAGAEIIDRLCSDSGSGSVRWQFVHGLFANAIYGGRIDNTFDMKVLESYLLQYFEQAV 3973

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|149633267|ref|XP_001509757.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Ornithorhynchus anatinus]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 10/145 (6%)

Query: 17   GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
            G+K+NL RTY SW+  ++N  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3920 GLKKNLMRTYESWTPEQINKKDVLSRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3979

Query: 74   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
            DL A  NI++     DG    +W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3980 DLRAGYNIIDRLF--DGTKDFQWEFVHGLLENAIYGGRIDNYFDLRVLRSYLEQFFNSSV 4037

Query: 134  AKTA-----STPLAPGVVLPSSTNL 153
               +      +     + LP+S N+
Sbjct: 4038 ISGSHHGRKKSGFPNSISLPNSCNI 4062

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47077421|dbj|BAD18598.1| unnamed protein product [Homo sapiens]

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/120 (56%), Positives = 89/120 (74%), Gaps = 5/120 (4%)

Query: 17  GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
           G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 828 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 887

Query: 74  DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
           DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 888 DLRAGYNIIDRLF--DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 945

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
UNIPROTKB|G3MYP7	506	G3MYP7 "Uncharacterized protei	0.547	0.237	0.512	2.2e-41
UNIPROTKB|F1SV51	589	DYNC2H1 "Uncharacterized prote	0.525	0.195	0.533	1.5e-40
UNIPROTKB|Q8NCM8	4307	DYNC2H1 "Cytoplasmic dynein 2	0.525	0.026	0.55	7.2e-38
UNIPROTKB|E2RDH6	4313	DYNC2H1 "Uncharacterized prote	0.525	0.026	0.525	3.9e-37
UNIPROTKB|E1C9F0	4303	DYNC2H1 "Uncharacterized prote	0.525	0.026	0.525	4e-37
MGI|MGI:107736	4306	Dync2h1 "dynein cytoplasmic 2	0.525	0.026	0.516	5e-37
RGD|71042	4306	Dync2h1 "dynein cytoplasmic 2	0.525	0.026	0.516	1e-36
UNIPROTKB|Q9JJ79	4306	Dync2h1 "Cytoplasmic dynein 2	0.525	0.026	0.516	1e-36
UNIPROTKB|F1LYM0	1536	F1LYM0 "Uncharacterized protei	0.438	0.062	0.524	1.3e-32
UNIPROTKB|H0YDE0	378	DYNC2H1 "Cytoplasmic dynein 2	0.525	0.304	0.55	4.9e-30

UNIPROTKB|G3MYP7 G3MYP7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
 Identities = 64/125 (51%), Positives = 84/125 (67%)

Query:    17 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  +++  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct:    83 GLKKNLMRTYESWTPEQISKKDNVHRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 142

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S++
Sbjct:   143 DLRAGYNIID-RLF-DGSKDVQWEFVHGLLENAIYGGRIDNYFDLRVLRSYLKQFFNSSI 200

Query:   134 AKTAS 138
                 S
Sbjct:   201 IDVLS 205

GO:0030286 "dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1SV51 DYNC2H1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
 Identities = 64/120 (53%), Positives = 83/120 (69%)

Query:    17 GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+    +K N+  +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct:   236 GLKKNLLRTYESWTPEQISKKNNIHRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 295

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S++
Sbjct:   296 DLRAGYNIID-RLF-DGTKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSI 353

GO:0030286 "dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q8NCM8 DYNC2H1 "Cytoplasmic dynein 2 heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 7.2e-38, Sum P(2) = 7.2e-38
 Identities = 66/120 (55%), Positives = 85/120 (70%)

Query:    17 GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct:  3835 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3894

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct:  3895 DLRAGYNIID-RLF-DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 3952

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0007030 "Golgi organization" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0003774 "motor activity" evidence=NAS

GO:0005874 "microtubule" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|E2RDH6 DYNC2H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
 Identities = 63/120 (52%), Positives = 82/120 (68%)

Query:    17 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  +++  D   +  ALF  AWFHA  QERR YIPQGW KFYEF+ S
Sbjct:  3841 GLKKNLMRTYESWTPEQISKKDNVHRAHALFNFAWFHAACQERRNYIPQGWTKFYEFSLS 3900

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S++
Sbjct:  3901 DLRAGYSIID-RLF-DGTKDVQWEFLHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSI 3958

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|E1C9F0 DYNC2H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 63/120 (52%), Positives = 81/120 (67%)

Query:    17 GIKRNLQRTYASWSQTKLN---STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  ++N   +  +  +LF LAWFHA+ QERR YIPQGW KFYEF+ S
Sbjct:  3830 GLKKNLLRTYESWTPEQINKKGNLSRAHSLFCLAWFHAVCQERRNYIPQGWTKFYEFSLS 3889

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL + G    +W+++HGL  NAIYGGRIDN  DMKVL SYL+  F+S+V
Sbjct:  3890 DLRAGFDIID-RLFE-GSKDFQWEFVHGLFENAIYGGRIDNYFDMKVLRSYLEQLFNSSV 3947

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

MGI|MGI:107736 Dync2h1 "dynein cytoplasmic 2 heavy chain 1" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 5.0e-37, Sum P(2) = 5.0e-37
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:    17 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct:  3834 GLKKNLMRTYESWTPEQISKRDNIHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3893

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL N+IYGGR+DN  D++VL SYL+ +F+S++
Sbjct:  3894 DLRAGYHVID-RLF-DGTKDVQWEFVHGLLENSIYGGRVDNYFDLRVLQSYLKQFFNSSI 3951

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0008105 "asymmetric protein localization" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IMP

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=IGI

GO:0030030 "cell projection organization" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030286 "dynein complex" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030900 "forebrain development" evidence=IMP

GO:0031512 "motile primary cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

GO:0060271 "cilium morphogenesis" evidence=IMP

RGD|71042 Dync2h1 "dynein cytoplasmic 2 heavy chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:    17 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct:  3834 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 3893

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL N+IYGGRIDN  D++VL SYL+ +F+S++
Sbjct:  3894 DLRAGYHVID-RLF-DGSKDVQWEFVHGLLENSIYGGRIDNYFDLRVLQSYLKQFFNSSI 3951

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005874 "microtubule" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0008105 "asymmetric protein localization" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030286 "dynein complex" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=ISO

GO:0030900 "forebrain development" evidence=ISO

GO:0031512 "motile primary cilium" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IEA;ISO

GO:0042384 "cilium assembly" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

UNIPROTKB|Q9JJ79 Dync2h1 "Cytoplasmic dynein 2 heavy chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:    17 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct:  3834 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 3893

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL N+IYGGRIDN  D++VL SYL+ +F+S++
Sbjct:  3894 DLRAGYHVID-RLF-DGSKDVQWEFVHGLLENSIYGGRIDNYFDLRVLQSYLKQFFNSSI 3951

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

UNIPROTKB|F1LYM0 F1LYM0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 273 (101.2 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 53/101 (52%), Positives = 69/101 (68%)

Query:    17 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct:  1070 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 1129

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDN 114
             D          RL  DG   V+W+++HGLL N+IYGGRID+
Sbjct:  1130 DLRAGYHVID-RLF-DGSKDVQWEFVHGLLENSIYGGRIDD 1168

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|H0YDE0 DYNC2H1 "Cytoplasmic dynein 2 heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 66/120 (55%), Positives = 85/120 (70%)

Query:    17 GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 73
             G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct:   228 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 287

Query:    74 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 133
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct:   288 DLRAGYNIID-RLF-DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 345

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q45VK7	DYHC2_MOUSE	No assigned EC number	0.5166	0.5251	0.0267	yes	N/A
Q9JJ79	DYHC2_RAT	No assigned EC number	0.5166	0.5251	0.0267	yes	N/A
Q8NCM8	DYHC2_HUMAN	No assigned EC number	0.5583	0.5251	0.0267	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
pfam03028	706	pfam03028, Dynein_heavy, Dynein heavy chain and re	2e-32
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	4e-13

>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor

 Score =  123 bits (310), Expect = 2e-32
 Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 4/119 (3%)

Query: 16  AGIKRNLQRTYASWSQTKLNSTDQGRA----LFTLAWFHALIQERRTYIPQGWAKFYEFN 71
            G+K NL R  +S++Q  L    +       LF L +FHA++QERR + P GW K YEFN
Sbjct: 233 TGLKANLLRALSSFTQETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFN 292

Query: 72  DSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFS 130
           + DL  +L++L+  L  +    V W+ +  L G  +YGGRI +  D ++L +YL+ +F+
Sbjct: 293 EGDLRISLDVLDNYLDANAPDKVPWEDLRYLFGEIMYGGRITDDWDRRLLRTYLEEFFT 351

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 67.3 bits (164), Expect = 4e-13
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 41   RALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIH 100
               F L+W HA +    +  P+   +   F D D     ++L   L  + +   KW    
Sbjct: 3008 DDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLNHLNARKWGNNR 3067

Query: 101  GLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 148
             L+   +YG +    +D KV+  Y + Y     A   S+ +   V   
Sbjct: 3068 DLIFTIVYGKKHSLMEDSKVVDKYCRGYG----AHETSSQILASVPGG 3111

Length = 3164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PF03028	707	Dynein_heavy: Dynein heavy chain and region D6 of	100.0
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.69

>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=1.5e-56  Score=431.39  Aligned_cols=214  Identities=36%  Similarity=0.614  Sum_probs=167.3

Q ss_pred             CCHHHHhccchhcc---hHHHHHHHHHHhcccccccC----cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHH
Q psy17361          2 KKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD   74 (219)
Q Consensus         2 ~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sD   74 (219)
                      +|.+|||+|+||++   +|+|+||.++|++++++.++    +..+++++|+||||||||+||++|||+|||++||||++|
T Consensus       216 ~P~~lL~~s~kv~~E~p~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sD  295 (707)
T PF03028_consen  216 FPISLLQSSIKVTYEPPPGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSD  295 (707)
T ss_dssp             S-HHHHHCSEEEEE---SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHH
T ss_pred             CCHHHHHcccceeeCChhHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHH
Confidence            69999999999999   99999999999998777664    568999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCC--------C---
Q psy17361         75 LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLA--------P---  143 (219)
Q Consensus        75 l~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~--------p---  143 (219)
                      |++|++++..++++...+.|||++++|++++++|||||||++|+|+|++|+++||++++++++ ..+.        |   
T Consensus       296 l~~a~~~l~~~~~~~~~~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~-~~l~~~~~~~~~P~~~  374 (707)
T PF03028_consen  296 LRAALDILDNWLDESSPESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPD-FQLSPDSGSYSIPDSN  374 (707)
T ss_dssp             HHHHHHHHHHHHHHCSCCCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT--EEET-TTTEE----S
T ss_pred             HHHHHHHHHHHHhhccccCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcch-hhcccCCCCccCCccc
Confidence            999999999999865568999999999999999999999999999999999999999999854 1111        1   


Q ss_pred             --------------------------------------------------------------------------------
Q psy17361        144 --------------------------------------------------------------------------------  143 (219)
Q Consensus       144 --------------------------------------------------------------------------------  143 (219)
                                                                                                      
T Consensus       375 ~~~~~~~~i~~lp~~~~p~~~GL~~na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~  454 (707)
T PF03028_consen  375 SLEDYIEWIEQLPDEDPPEWFGLPPNAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLF  454 (707)
T ss_dssp             SHHHHHHHHCTS-SS--CCCCTS-TTHHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-------------
T ss_pred             cHHHHHHHHHhCCCCCCccccCCCccHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccC
Confidence                                                                                            


Q ss_pred             ------------------------------------------------CCCCCCC---------CCCCCchhhhhhccCC
Q psy17361        144 ------------------------------------------------GVVLPSS---------TNLGTPDDWQSIWSGS  166 (219)
Q Consensus       144 ------------------------------------------------g~~~~~~---------~~~~vP~~W~~~~~~p  166 (219)
                                                                      |...+++         +.++||+.|.+.++++
T Consensus       455 ~~~~~~~~~~~~~~~~Pl~~fl~qE~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s  534 (707)
T PF03028_consen  455 PIEEVKSKRPAENSNDPLNRFLEQEIERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPS  534 (707)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---S
T ss_pred             CHHHHhccCCccccCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCC
Confidence                                                            1111111         6799999999986655


Q ss_pred             -CChHHHHHHHHHHHHHHHHHHHh-cccCCCCceeCCCCCCchHHHHHHHhhhcC
Q psy17361        167 -GNPLLYIRSVVSRAVTVHKCYQV-SSTYWRSPVDLSGLFHPHAFLSVLKQHTAR  219 (219)
Q Consensus       167 -~~~~~Wl~~l~~R~~~l~~w~~~-~~~~l~~~~~ls~~f~P~~fl~al~Q~~aR  219 (219)
                       ..+.+|+++|+.|++++++|.+. +   .|.++|||+||||++||||+||++||
T Consensus       535 ~~~l~~Wl~dL~~Rv~~l~~w~~~~~---~p~~~wLs~ff~P~aFLtAlrQ~~AR  586 (707)
T PF03028_consen  535 PKPLSSWLQDLIKRVEQLQRWASNSG---QPKSFWLSGFFNPQAFLTALRQEYAR  586 (707)
T ss_dssp             S--HHHHHHHHHHHHHHHHHHHH----------B-GGGSS-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccC---CceEEecccccChHHHHHHHHHHHHH
Confidence             46779999999999999999998 4   48999999999999999999999997

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.69  E-value=6.7e-17  Score=160.00  Aligned_cols=145  Identities=17%  Similarity=0.177  Sum_probs=126.0

Q ss_pred             CCCHHHHhccchhcc---hHHHHHHHHHHhcccccccC--cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHHH
Q psy17361          1 MKKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN--STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDL   75 (219)
Q Consensus         1 ~~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~--~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sDl   75 (219)
                      |+|..+|+.+-.+++   ||++.++...+.. ..-.+.  ....-+..|.|+|+||.+.+|-.++|-|||++|.|+++|+
T Consensus      2964 ~lp~qlL~~~dsfv~~~~p~~~~~~~dL~e~-~~~~~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df 3042 (3164)
T COG5245        2964 MLPIQLLIAIDSFVSSTYPETGCGYADLVEI-DRYPFDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDF 3042 (3164)
T ss_pred             cccHHHHHHhhhhhhccCCcccccHHHHHhc-CcccccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchH
Confidence            789999999999999   9999999999854 333333  4445588999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCCCCCCCCCC
Q psy17361         76 NAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSS  150 (219)
Q Consensus        76 ~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~pg~~~~~~  150 (219)
                      +.+..+|++.+-.+..++++|...|.++.+|+||||++-..|.++++.||..++..+.    +.++.||..++.|
T Consensus      3043 ~f~T~~L~NIl~~nhln~~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~~----~sQi~~~V~~~dp 3113 (3164)
T COG5245        3043 EFKTHLLKNILFLNHLNARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHET----SSQILASVPGGDP 3113 (3164)
T ss_pred             HHHHHHHHHHHhccccccccccchhhheeEeeecCccchhhhHHHHHHHHHHhccCcc----cchhccCCcCCCh
Confidence            9999999998764345789999999999999999999999999999999999998764    3567777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		3e-20
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		3e-20
3qmz_A	2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		2e-11
4ai6_A	2695	Dynein Motor Domain - Adp Complex Length = 2695		2e-11

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 17   GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K NL  T+     T+++    ++ R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 2880 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2939
Query: 75   XXXXXXXXX--XRLSQDGMGGVK-----WDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
                         L   G   +      W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 2940 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2999
Query: 128  YFSSNVAKTASTPLAP--GVVLPSST 151
             F+ + A     PL P  G+ +P  T
Sbjct: 3000 LFTPS-AFNPDFPLVPSIGLSVPEGT 3024

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 17   GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K NL  T+     T+++    ++ R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 2758 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817
Query: 75   XXXXXXXXX--XRLSQDGMGGVK-----WDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
                         L   G   +      W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877
Query: 128  YFSSNVAKTASTPLAP--GVVLPSST 151
             F+ + A     PL P  G+ +P  T
Sbjct: 2878 LFTPS-AFNPDFPLVPSIGLSVPEGT 2902

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 44   FTLAWFHALIQERRTYIPQGWAKFYEFNDSDXXXXXXXXXXRLSQDGMGGVKWDYIHGLL 103
            F L+WFHALI  R   +P G++K Y FND D           L+ +    + W  +   +
Sbjct: 2324 FLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHI 2383
Query: 104  GNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 148
               +YGG+ID  +D++V++      F      + +  + PGV +P
Sbjct: 2384 ATIVYGGKIDEEKDLEVVAKLCAHVFCG----SDNLQIVPGVRIP 2424

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 44   FTLAWFHALIQERRTYIPQGWAKFYEFNDSDXXXXXXXXXXRLSQDGMGGVKWDYIHGLL 103
            F L+WFHALI  R   +P G++K Y FND D           L+ +    + W  +   +
Sbjct: 2533 FLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHI 2592
Query: 104  GNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 148
               +YGG+ID  +D++V++      F      + +  + PGV +P
Sbjct: 2593 ATIVYGGKIDEEKDLEVVAKLCAHVFCG----SDNLQIVPGVRIP 2633

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	1e-39
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-38
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	9e-05

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  143 bits (363), Expect = 1e-39
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 17   GIKRNLQRTYASWS-QTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDL 75
            GI   ++  + S     K++        F L+WFHALI  R   +P G++K Y FND D 
Sbjct: 2505 GILDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDF 2564

Query: 76   NAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAK 135
              A   L   L+ +    + W  +   +   +YGG+ID  +D++V++      F  +   
Sbjct: 2565 QFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCGS--- 2621

Query: 136  TASTPLAPGVVLPSSTNLGTPDD 158
              +  + PGV +P      + ++
Sbjct: 2622 -DNLQIVPGVRIPQPLLQQSEEE 2643

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  139 bits (351), Expect = 5e-38
 Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 16/151 (10%)

Query: 17   GIKRNLQRTYASWSQTKLNSTDQ--GRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 74
            G+K NL  T+     T+++       R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 2758 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817

Query: 75   LNAALNILNARLSQDGMGG-------VKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 127
            L  AL+ ++  +     G        + W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877

Query: 128  YFSSNVAKTASTPLAPGVVLPSSTNLGTPDD 158
             F+ +          P   L  S  L  P+ 
Sbjct: 2878 LFTPSA-------FNPDFPLVPSIGLSVPEG 2901

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 156  PDDWQSIWSGSGNPL-LYIRSVVSRAVTVHKCYQ----VSSTYWRSPVDLSGLFHPHAFL 210
            P +W+         L ++I     R   + +  +     S   W     L GL +P A++
Sbjct: 3062 PKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVW-----LGGLLNPEAYI 3116

Query: 211  SVLKQHTAR 219
            +  +Q  ++
Sbjct: 3117 TATRQSASQ 3125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=7.3e-57  Score=475.49  Aligned_cols=216  Identities=31%  Similarity=0.589  Sum_probs=176.0

Q ss_pred             CCHHHHhccchhcc---hHHHHHHHHHHhcccccccC--cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHHHH
Q psy17361          2 KKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN--STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLN   76 (219)
Q Consensus         2 ~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~--~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sDl~   76 (219)
                      +|++|||+|+|||+   +|||+||+|+|..++++.+.  +..+++++|+||||||||||||+|||+|||++||||++||+
T Consensus      2740 fP~~iLq~siKit~EpP~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~ 2819 (3245)
T 3vkg_A         2740 LPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLR 2819 (3245)
T ss_dssp             SCHHHHHTSEECCBCCCSSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHH
T ss_pred             CCHHHHHhhhHheeCCChhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHH
Confidence            79999999999999   99999999999998887776  56788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc-------CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCC-------
Q psy17361         77 AALNILNARLSQD-------GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLA-------  142 (219)
Q Consensus        77 ~~~~~l~~~~~~~-------~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~-------  142 (219)
                      +|+++|++++++.       .+++|||++|+|++|+|+|||||||+||||+|++|+++||++++++++ +.++       
T Consensus      2820 ~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~-~~~~~~~~~~~ 2898 (3245)
T 3vkg_A         2820 GALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPD-FPLVPSIGLSV 2898 (3245)
T ss_dssp             HHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSS-CEEEGGGTEEC
T ss_pred             HHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCc-ccCCCCCCCCC
Confidence            9999999999753       125799999999999999999999999999999999999999998754 1111       


Q ss_pred             C-------------------------------------------------------------------------------
Q psy17361        143 P-------------------------------------------------------------------------------  143 (219)
Q Consensus       143 p-------------------------------------------------------------------------------  143 (219)
                      |                                                                               
T Consensus      2899 P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 2978 (3245)
T 3vkg_A         2899 PEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGK 2978 (3245)
T ss_dssp             CCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCcH
Confidence            1                                                                               


Q ss_pred             --------------------------------------------------------------CCCCCCC---------CC
Q psy17361        144 --------------------------------------------------------------GVVLPSS---------TN  152 (219)
Q Consensus       144 --------------------------------------------------------------g~~~~~~---------~~  152 (219)
                                                                                    |..++++         ++
T Consensus      2979 ~~v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~ 3058 (3245)
T 3vkg_A         2979 AKLRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISK 3058 (3245)
T ss_dssp             HC----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred             HHHHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHc
Confidence                                                                          1111111         67


Q ss_pred             CCCchhhhhhccCCCC-hHHHHHHHHHHHHHHHHHHHhcccCCCCceeCCCCCCchHHHHHHHhhhcC
Q psy17361        153 LGTPDDWQSIWSGSGN-PLLYIRSVVSRAVTVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR  219 (219)
Q Consensus       153 ~~vP~~W~~~~~~p~~-~~~Wl~~l~~R~~~l~~w~~~~~~~l~~~~~ls~~f~P~~fl~al~Q~~aR  219 (219)
                      ++||+.|.+..+++.+ +.+|++||+.|+++++.|.+.+ ...|.++|||||||||+||||+||++||
T Consensus      3059 ~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~~-~~~p~~~WLsgff~Pq~FLTA~~Q~~AR 3125 (3245)
T 3vkg_A         3059 GIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESS-DYSSIQVWLGGLLNPEAYITATRQSASQ 3125 (3245)
T ss_dssp             -------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC--------CCGGGSSCHHHHHHHHHHHHHH
T ss_pred             CCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCceEecCCCcchHHHHHHHHHHHHH
Confidence            9999999997777765 5699999999999999999874 1258999999999999999999999998

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=6e-39  Score=337.98  Aligned_cols=140  Identities=26%  Similarity=0.550  Sum_probs=126.8

Q ss_pred             CCHHHHhccchhcc---hHHHHHHHHHHhcccccccC----cccchhhHHHHHHHHHHHHHHHhhCCCCCccccccCHHH
Q psy17361          2 KKRTLTAKKKKIRF---AGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD   74 (219)
Q Consensus         2 ~p~~lLq~s~ki~~---~glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~YeF~~sD   74 (219)
                      +|++|||+|+|||+   +|||+||+|+|..   +.++    ++.|++++|+||||||||||||+|||+|||++||||++|
T Consensus      2487 fP~~iLq~s~K~t~EpP~Glkanl~r~~~~---~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sD 2563 (2695)
T 4akg_A         2487 LPAPLLQRTDRFVYEDIPGILDTVKDLWGS---QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCD 2563 (2695)
T ss_dssp             CCHHHHHHSEEEEECCCCCHHHHHHHHHHH---GGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHH
T ss_pred             CCHHHHhccceeeecCChhHHHHHHHHhhh---HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhH
Confidence            79999999999999   9999999999942   3332    678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhcCCCCCCCCCCCCCC
Q psy17361         75 LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP  148 (219)
Q Consensus        75 l~~~~~~l~~~~~~~~~~~i~w~~l~~l~~~iiYGGrv~d~~D~r~L~~~l~~~f~~~~l~~~~~~l~pg~~~~  148 (219)
                      |++|+++|++++++..++.|||++|||++|+|+|||||||+||||+|++|+++||++   ++ ++.++||..++
T Consensus      2564 l~~s~~~l~~~l~~~~~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~-~~~~~~~~~~~ 2633 (2695)
T 4akg_A         2564 FQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SD-NLQIVPGVRIP 2633 (2695)
T ss_dssp             HHHHHHHHHHHHHHSCSCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SS-BCCSSSSCCCB
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CC-CcccCCCcCcC
Confidence            999999999999854347899999999999999999999999999999999999999   33 47788876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00