Psyllid ID: psy17374

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MCPNDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Secondary Structure (PSIPRED)
ccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mcpndytpddwqsiwsgsgnpllYIRSVVSRAVMVHKCYqvsstywrspvdlsglfhpHAFLSVLKQHTAR
Flexible Loop (DISEMBL)
mcpndytpddwqsiwsgSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Low Complexity Region (SEG)
MCPNDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Disordered region (IsUnstruct)
*********DWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVL******
Disordered Region (DISOPRED)
***NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKC**********PVDLSGLFHPHAFLSVLKQHT**
Disordered Region (DISEMBL)
********DDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Disordered Region (DISPRO)
MCPNDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCPNDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q27802	4318	Cytoplasmic dynein 2 heav	N/A	N/A	0.915	0.015	0.388	1e-08
Q8NCM8	4307	Cytoplasmic dynein 2 heav	yes	N/A	0.957	0.015	0.4	3e-08
Q9JJ79	4306	Cytoplasmic dynein 2 heav	yes	N/A	0.957	0.015	0.385	6e-08
Q45VK7	4306	Cytoplasmic dynein 2 heav	yes	N/A	0.957	0.015	0.385	7e-08
Q19542	4171	Cytoplasmic dynein 2 heav	yes	N/A	0.915	0.015	0.358	5e-07
Q9SMH5	4334	Cytoplasmic dynein 2 heav	N/A	N/A	0.943	0.015	0.324	8e-07

>sp|Q27802|DYHC2_TRIGR Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla GN=DYH1B PE=2 SV=2

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 7    TPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAFLSV 64
            TP  WQS W G  +P+LY++++VSR + +    + +  +      ++LS LFHP  FL+ 
Sbjct: 4134 TPLSWQSKWEGPEDPVLYLKTIVSRTMAIQGWVEKAQRNNLLSDTLNLSELFHPDTFLNA 4193

Query: 65   LKQHTAR 71
            L+Q TAR
Sbjct: 4194 LRQQTAR 4200

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.
Tripneustes gratilla (taxid: 7673)

>sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens GN=DYNC2H1 PE=1 SV=4

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+RA+ +      +         +DLS LFHP  F
Sbjct: 4120 NQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPDTF 4179

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4180 LNALRQETAR 4189

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Homo sapiens (taxid: 9606)

>sp|Q9JJ79|DYHC2_RAT Cytoplasmic dynein 2 heavy chain 1 OS=Rattus norvegicus GN=Dync2h1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+R + +    + +         +DLS LFHP  F
Sbjct: 4119 NQKCPLTWQSKWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQALLADTLDLSELFHPDTF 4178

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4179 LNALRQETAR 4188

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Rattus norvegicus (taxid: 10116)

>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+R + +    + +         +DLS LFHP  F
Sbjct: 4119 NQKCPLTWQSRWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQVLLADTLDLSELFHPDTF 4178

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4179 LNALRQETAR 4188

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. According to PubMed:8666668, it may play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Mus musculus (taxid: 10090)

>sp|Q19542|DYHC2_CAEEL Cytoplasmic dynein 2 heavy chain 1 OS=Caenorhabditis elegans GN=che-3 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 7    TPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRS--PVDLSGLFHPHAFLSV 64
            TPD+W S+W+G  +P  Y+  VV +     + ++ S +      P+D S LF+P+ FL+ 
Sbjct: 3993 TPDEWDSMWAGPSDPADYLNVVVKKTRGTLQLFESSKSSSLLSSPIDFSDLFYPNIFLNA 4052

Query: 65   LKQHTAR 71
            L+Q T+R
Sbjct: 4053 LRQTTSR 4059

Function as a motor for intraflagellar retrograde transport in chemosensory neurons. Functions in cilia biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9SMH5|DYHC2_CHLRE Cytoplasmic dynein 2 heavy chain 1 OS=Chlamydomonas reinhardtii GN=DHC1B PE=1 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)

Query: 5    DYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVH----KCYQ------VSSTYWRSPVDLSG 54
            D  P  W + W G   P+ Y R+VV++A+ +     +C Q      +  +    P++LS 
Sbjct: 4137 DVIPGSWDAAWEGPEAPMDYCRAVVAKALAIEGHWARCQQPGGGGLLDGSGGAGPLELSS 4196

Query: 55   LFHPHAFLSVLKQHTAR 71
            +FHP  FL+ L+Q +AR
Sbjct: 4197 VFHPGTFLNALRQQSAR 4213

May function as a motor for intraflagellar retrograde transport. Functions in flagellar biogenesis.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
405953937	4305	Cytoplasmic dynein 2 heavy chain 1 [Cras	0.957	0.015	0.414	3e-08
443709962	4309	hypothetical protein CAPTEDRAFT_174571 [	0.957	0.015	0.414	3e-08
326914442	4190	PREDICTED: cytoplasmic dynein 2 heavy ch	0.957	0.016	0.442	3e-08
260833144	747	hypothetical protein BRAFLDRAFT_117190 [	0.915	0.087	0.432	4e-08
118085134	4301	PREDICTED: cytoplasmic dynein 2 heavy ch	0.957	0.015	0.428	5e-08
391348079	4216	PREDICTED: cytoplasmic dynein 2 heavy ch	0.915	0.015	0.439	1e-07
390469590	4310	PREDICTED: LOW QUALITY PROTEIN: cytoplas	0.957	0.015	0.428	1e-07
358415491	4307	PREDICTED: cytoplasmic dynein 2 heavy ch	0.957	0.015	0.414	2e-07
440912591	4318	Cytoplasmic dynein 2 heavy chain 1 [Bos	0.957	0.015	0.414	2e-07
194673141	4314	PREDICTED: cytoplasmic dynein 2 heavy ch	0.957	0.015	0.414	2e-07

>gi|405953937|gb|EKC21500.1| Cytoplasmic dynein 2 heavy chain 1 [Crassostrea gigas]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
            N  TP DWQ  W G  +P+ Y+R +V+RA  +      +      R  +DLS LFHP  F
Sbjct: 4118 NQETPLDWQGKWDGPEDPMQYLRGLVTRATAIQTWVDKADHGNLLRDTLDLSDLFHPDTF 4177

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4178 LNALRQQTAR 4187

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|443709962|gb|ELU04382.1| hypothetical protein CAPTEDRAFT_174571 [Capitella teleta]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQV--SSTYWRSPVDLSGLFHPHAF 61
            N  TP  W S WSG  +P+LY+R ++ RAV V +  +   S +     +DL  LFHP  F
Sbjct: 4122 NQETPQSWLSKWSGPEDPMLYLRGLIGRAVAVSRWVEKVESRSLLNETLDLGHLFHPDTF 4181

Query: 62   LSVLKQHTAR 71
            L+ ++Q TAR
Sbjct: 4182 LNAVRQQTAR 4191

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|326914442|ref|XP_003203534.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Meleagris gallopavo]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL YIRS+V+RA+ +    + +         +DLS LFHP AF
Sbjct: 4003 NQKCPLTWQSKWEGPEDPLQYIRSLVARALAIQNWVEKAEKQKLLSDTLDLSELFHPDAF 4062

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4063 LNALRQETAR 4072

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260833144|ref|XP_002611517.1| hypothetical protein BRAFLDRAFT_117190 [Branchiostoma floridae] gi|229296888|gb|EEN67527.1| hypothetical protein BRAFLDRAFT_117190 [Branchiostoma floridae]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 7   TPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAFLSV 64
           TP  WQS+W G  +P+ Y+R++V+RA+ +    + +   T  R  +DLS LFHP  FL+ 
Sbjct: 563 TPGGWQSMWEGPEDPMQYLRALVARAMAIQGWAERAEAGTLLRDVLDLSELFHPDTFLNA 622

Query: 65  LKQHTAR 71
           L+Q TAR
Sbjct: 623 LRQQTAR 629

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118085134|ref|XP_417173.2| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Gallus gallus]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL YIRS+V+RA+ +    + +         +DLS LFHP  F
Sbjct: 4114 NQKCPPTWQSKWEGPEDPLQYIRSLVARALAIQNWVEKAEKQKLLSDTLDLSELFHPDTF 4173

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4174 LNALRQETAR 4183

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391348079|ref|XP_003748279.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Metaseiulus occidentalis]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 7    TPDDWQSIWSGSGNPLLYIRSVVSRAVMV-HKCYQVSSTYWRSPVDLSGLFHPHAFLSVL 65
            TP +W  +WSGS +P +Y+R VVS+A  + +K    S +   S +DL+ LF+P+ FL+ L
Sbjct: 4035 TPSEWLRLWSGSEDPYVYLRLVVSKASSIQNKWLHRSGSLAGSSLDLAELFNPNKFLNAL 4094

Query: 66   KQHTAR 71
            +Q TAR
Sbjct: 4095 RQQTAR 4100

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390469590|ref|XP_002754438.2| PREDICTED: LOW QUALITY PROTEIN: cytoplasmic dynein 2 heavy chain 1 [Callithrix jacchus]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+RAV +      +   T     +DLS LFHP  F
Sbjct: 4123 NQKCPLAWQSKWEGPEDPLQYLRGLVARAVAIQNWVDKAEKQTLLSETLDLSELFHPDTF 4182

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4183 LNALRQETAR 4192

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|358415491|ref|XP_003583122.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1 isoform 1 [Bos taurus]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+RA+ +    + +   T     +DLS LFHP  F
Sbjct: 4120 NQKCPLTWQSKWEGPEDPLQYLRGLVARALAIQSWVERAEKQTLLSDTLDLSELFHPDTF 4179

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4180 LNALRQETAR 4189

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440912591|gb|ELR62148.1| Cytoplasmic dynein 2 heavy chain 1 [Bos grunniens mutus]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+RA+ +    + +   T     +DLS LFHP  F
Sbjct: 4131 NQKCPLTWQSKWEGPEDPLQYLRGLVARALAIQSWVERAEKQTLLSDTLDLSELFHPDTF 4190

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4191 LNALRQETAR 4200

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194673141|ref|XP_589775.4| PREDICTED: cytoplasmic dynein 2 heavy chain 1 isoform 2 [Bos taurus]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 4    NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
            N   P  WQS W G  +PL Y+R +V+RA+ +    + +   T     +DLS LFHP  F
Sbjct: 4127 NQKCPLTWQSKWEGPEDPLQYLRGLVARALAIQSWVERAEKQTLLSDTLDLSELFHPDTF 4186

Query: 62   LSVLKQHTAR 71
            L+ L+Q TAR
Sbjct: 4187 LNALRQETAR 4196

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
UNIPROTKB|G3MYP7	506	G3MYP7 "Uncharacterized protei	0.957	0.134	0.414	2.1e-08
UNIPROTKB|F1SV51	589	DYNC2H1 "Uncharacterized prote	0.957	0.115	0.414	2.7e-08
UNIPROTKB|H0YEX1	224	DYNC2H1 "Cytoplasmic dynein 2	0.901	0.285	0.409	3.9e-08
UNIPROTKB|E1C9F0	4303	DYNC2H1 "Uncharacterized prote	0.957	0.015	0.428	1e-07
WB|WBGene00000485	4171	che-3 [Caenorhabditis elegans	0.915	0.015	0.388	5.6e-07
UNIPROTKB|F1LYM0	1536	F1LYM0 "Uncharacterized protei	0.957	0.044	0.385	6.4e-07
UNIPROTKB|E2RDH6	4313	DYNC2H1 "Uncharacterized prote	0.957	0.015	0.385	1.2e-06
UNIPROTKB|Q8NCM8	4307	DYNC2H1 "Cytoplasmic dynein 2	0.957	0.015	0.4	1.5e-06
MGI|MGI:107736	4306	Dync2h1 "dynein cytoplasmic 2	0.957	0.015	0.385	2e-06
RGD|71042	4306	Dync2h1 "dynein cytoplasmic 2	0.957	0.015	0.385	2e-06

UNIPROTKB|G3MYP7 G3MYP7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 29/70 (41%), Positives = 40/70 (57%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL Y+R +V+RA+ +    + +   T     +DLS LFHP  F
Sbjct:   368 NQKCPLTWQSKWEGPEDPLQYLRGLVARALAIQSWVERAEKQTLLSDTLDLSELFHPDTF 427

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:   428 LNALRQETAR 437

GO:0030286 "dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1SV51 DYNC2H1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 29/70 (41%), Positives = 40/70 (57%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL Y+R +V+RA+ +    + +   T     +DLS LFHP  F
Sbjct:   520 NQKCPLTWQSKWEGPEDPLQYLRGLVARALAIQSWVERAEKQTLLTDTLDLSELFHPDTF 579

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:   580 LNALRQETAR 589

GO:0030286 "dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|H0YEX1 DYNC2H1 "Cytoplasmic dynein 2 heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 127 (49.8 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query:     8 PDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAFLSVL 65
             P  WQS W G  +PL Y+R +V+RA+ +      +         +DLS LFHP  FL+ L
Sbjct:    41 PLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPDTFLNAL 100

Query:    66 KQHTAR 71
             +Q TAR
Sbjct:   101 RQETAR 106

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|E1C9F0 DYNC2H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/70 (42%), Positives = 40/70 (57%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTY--WRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL YIRS+V+RA+ +    + +         +DLS LFHP  F
Sbjct:  4116 NQKCPPTWQSKWEGPEDPLQYIRSLVARALAIQNWVEKAEKQKLLSDTLDLSELFHPDTF 4175

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:  4176 LNALRQETAR 4185

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

WB|WBGene00000485 che-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 134 (52.2 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query:     7 TPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAFLSV 64
             TPD+W S+W+G  +P  Y+  VV +     + ++ S  S+   SP+D S LF+P+ FL+ 
Sbjct:  3993 TPDEWDSMWAGPSDPADYLNVVVKKTRGTLQLFESSKSSSLLSSPIDFSDLFYPNIFLNA 4052

Query:    65 LKQHTAR 71
             L+Q T+R
Sbjct:  4053 LRQTTSR 4059

GO:0001539 "ciliary or flagellar motility" evidence=IEA;IMP

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0042384 "cilium assembly" evidence=IMP

GO:0007635 "chemosensory behavior" evidence=IMP

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IGI

GO:0008104 "protein localization" evidence=IMP

GO:0005929 "cilium" evidence=IDA

UNIPROTKB|F1LYM0 F1LYM0 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL Y+R +V+R + +    + +         +DLS LFHP  F
Sbjct:  1349 NQKCPLTWQSKWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQALLADTLDLSELFHPDTF 1408

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:  1409 LNALRQETAR 1418

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|E2RDH6 DYNC2H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +P+ Y+R +V+RA+ +    + +     +   +DLS LFHP  F
Sbjct:  4126 NQKCPLAWQSKWEGPEDPVQYLRGLVARALAIQSWVERAEKQALFSDTLDLSELFHPDTF 4185

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:  4186 LNALRQETAR 4195

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|Q8NCM8 DYNC2H1 "Cytoplasmic dynein 2 heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/70 (40%), Positives = 38/70 (54%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL Y+R +V+RA+ +      +         +DLS LFHP  F
Sbjct:  4120 NQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPDTF 4179

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:  4180 LNALRQETAR 4189

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0007030 "Golgi organization" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0003774 "motor activity" evidence=NAS

GO:0005874 "microtubule" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

MGI|MGI:107736 Dync2h1 "dynein cytoplasmic 2 heavy chain 1" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL Y+R +V+R + +    + +         +DLS LFHP  F
Sbjct:  4119 NQKCPLTWQSRWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQVLLADTLDLSELFHPDTF 4178

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:  4179 LNALRQETAR 4188

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0008105 "asymmetric protein localization" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IMP

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=IGI

GO:0030030 "cell projection organization" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030286 "dynein complex" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030900 "forebrain development" evidence=IMP

GO:0031512 "motile primary cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

GO:0060271 "cilium morphogenesis" evidence=IMP

RGD|71042 Dync2h1 "dynein cytoplasmic 2 heavy chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query:     4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSS--TYWRSPVDLSGLFHPHAF 61
             N   P  WQS W G  +PL Y+R +V+R + +    + +         +DLS LFHP  F
Sbjct:  4119 NQKCPLTWQSKWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQALLADTLDLSELFHPDTF 4178

Query:    62 LSVLKQHTAR 71
             L+ L+Q TAR
Sbjct:  4179 LNALRQETAR 4188

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005874 "microtubule" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0008105 "asymmetric protein localization" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030286 "dynein complex" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=ISO

GO:0030900 "forebrain development" evidence=ISO

GO:0031512 "motile primary cilium" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IEA;ISO

GO:0042384 "cilium assembly" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
PF03028	707	Dynein_heavy: Dynein heavy chain and region D6 of	99.79

>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=99.79  E-value=6.7e-20  Score=137.00  Aligned_cols=67  Identities=24%  Similarity=0.383  Sum_probs=46.9

Q ss_pred             CCCCCchhhhhhcc-CCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceecCCCcchhHHHHHHHHHhcC
Q psy17374          3 PNDYTPDDWQSIWS-GSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR   71 (71)
Q Consensus         3 ~~~~vP~~W~~~~~-~~~~~~~w~~~l~~R~~~l~~w~~~~~~~~~~~~wLs~lF~P~~FLtA~~Q~~AR   71 (71)
                      ..|+||..|.+.++ +++.+.+|++||++|++++++|.+..+  .|.+|||||||||++||||+||++||
T Consensus       519 ~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~Rv~~l~~w~~~~~--~p~~~wLs~ff~P~aFLtAlrQ~~AR  586 (707)
T PF03028_consen  519 LKGQVPKSWLRYSYPSPKPLSSWLQDLIKRVEQLQRWASNSG--QPKSFWLSGFFNPQAFLTALRQEYAR  586 (707)
T ss_dssp             HHTS--GGG--S---SS--HHHHHHHHHHHHHHHHHHHH---------B-GGGSS-HHHHHHHHHHHHHH
T ss_pred             HhCCCChhHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhccC--CceEEecccccChHHHHHHHHHHHHH
Confidence            46899999998644 567779999999999999999998622  47999999999999999999999997

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	5e-07

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 4    NDYTPDDWQSIWSGSGNPL-LYIRSVVSRAVMVHKCYQ----VSSTYWRSPVDLSGLFHP 58
                P +W+         L ++I     R   + +  +     S   W     L GL +P
Sbjct: 3058 KGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVW-----LGGLLNP 3112

Query: 59   HAFLSVLKQHTAR 71
             A+++  +Q  ++
Sbjct: 3113 EAYITATRQSASQ 3125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.78

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.78  E-value=4.7e-20  Score=151.89  Aligned_cols=69  Identities=19%  Similarity=0.328  Sum_probs=47.0

Q ss_pred             CCCCCCchhhhhhccCC-CChHHHHHHHHHHHHHHHHHHhhcCCCCCCceecCCCcchhHHHHHHHHHhcC
Q psy17374          2 CPNDYTPDDWQSIWSGS-GNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR   71 (71)
Q Consensus         2 ~~~~~vP~~W~~~~~~~-~~~~~w~~~l~~R~~~l~~w~~~~~~~~~~~~wLs~lF~P~~FLtA~~Q~~AR   71 (71)
                      +.+|+||..|.+..+++ +.+++|++||++|++|++.|.+. +...|.+|||||||||++||||+||++||
T Consensus      3056 l~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~-~~~~p~~~WLsgff~Pq~FLTA~~Q~~AR 3125 (3245)
T 3vkg_A         3056 ISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISES-SDYSSIQVWLGGLLNPEAYITATRQSASQ 3125 (3245)
T ss_dssp             ----------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC--------CCGGGSSCHHHHHHHHHHHHHH
T ss_pred             HHcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCCCceEecCCCcchHHHHHHHHHHHHH
Confidence            45799999999855544 45699999999999999999986 32248999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00