Psyllid ID: psy17386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCYQS
Secondary Structure (PSIPRED)
ccEEEEEEEEccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHcccccccccccccccccEEEEEcccccEEcccccHHHHcccccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccccccHHHHHHHcccccccccccEEEEcHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHcccccHHHHHHHHcHHHHHHccccEEEccccccccEEEEEEEccccEEEcccHHHHHHHHcHHHEcccccccHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHcccHHHHHEHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
TYTGTILvavnpykeldiytQSKVCEyhgakmgsqepHVFALAEAAYSSLqnldvnqscvisgesgagkteTTKFILQYLCSVTSNVSTWVEQQILEANTILEAFgnaktvrndnssrfgkfmqvcfdpkwmikgciiqdylleqsritfqspgernyHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHIntctnpgqdstrflgvldifgfenfaVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSIsikprleltesfcyqs
Flexible Loop (DISEMBL)
tytgtilvavnpykeldiYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKtvrndnssrfGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCYQS
Low Complexity Region (SEG)
TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCYQS
Disordered region (IsUnstruct)
**TGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCY**
Disordered Region (DISOPRED)
TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTS*****VEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQY**SINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFC***
Disordered Region (DISEMBL)
TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCYQS
Disordered Region (DISPRO)
TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCYQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLELTESFCYQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q6PIF6	2116	Unconventional myosin-VII	yes	N/A	0.673	0.087	0.510	9e-51
P97479	2215	Unconventional myosin-VII	yes	N/A	0.601	0.074	0.550	9e-51
Q28970	566	Unconventional myosin-VII	no	N/A	0.601	0.293	0.550	2e-50
P91443	2098	Unconventional myosin hea	yes	N/A	0.594	0.078	0.551	7e-50
Q622K8	2099	Unconventional myosin hea	N/A	N/A	0.594	0.078	0.551	7e-50
Q99MZ6	2113	Unconventional myosin-VII	no	N/A	0.583	0.076	0.567	2e-49
Q9V3Z6	2167	Myosin-VIIa OS=Drosophila	no	N/A	0.583	0.074	0.586	2e-49
Q17LW0	2163	Myosin-VIIa OS=Aedes aegy	N/A	N/A	0.659	0.084	0.543	3e-49
Q29P71	2168	Myosin-VIIa OS=Drosophila	no	N/A	0.583	0.074	0.586	4e-49
Q13402	2215	Unconventional myosin-VII	no	N/A	0.601	0.074	0.544	4e-49

>sp|Q6PIF6|MYO7B_HUMAN Unconventional myosin-VIIb OS=Homo sapiens GN=MYO7B PE=2 SV=2

 Score =  200 bits (509), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 97/190 (51%), Positives = 137/190 (72%), Gaps = 4/190 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNP++ L +YT  +V  Y+   MG   PHVFA+A   Y S++    +Q C+
Sbjct: 96  TYTGSILVAVNPFQVLPLYTLEQVQLYYSRHMGELPPHVFAIANNCYFSMKRNKRDQCCI 155

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTK ILQ+L +++   S W+EQQ+LEAN ILEAFGNAKT+RNDNSSRFG
Sbjct: 156 ISGESGAGKTETTKLILQFLATISGQHS-WIEQQVLEANPILEAFGNAKTIRNDNSSRFG 214

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
           K++ + F+P  +I+G  I+ +LLE+SR+  Q+P ERNYH+FY ++      S+ +K+++ 
Sbjct: 215 KYIDIYFNPSGVIEGARIEQFLLEKSRVCRQAPEERNYHIFYCMLMGV---SAEDKQLLS 271

Query: 181 YTSEEKSHVI 190
             +  + H +
Sbjct: 272 LGTPSEYHYL 281

Myosins are actin-based motor molecules with ATPase activity. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. May be have a role in the apical membranes of transporting epithelia.
Homo sapiens (taxid: 9606)

>sp|P97479|MYO7A_MOUSE Unconventional myosin-VIIa OS=Mus musculus GN=Myo7a PE=1 SV=2

 Score =  200 bits (508), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 127/167 (76%), Gaps = 1/167 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++  + +Q C+
Sbjct: 96  TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNNRDQCCI 155

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct: 156 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 214

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEA 167
           K++ + F+ +  I+G  I+ YLLE+SR+  Q+P ERNYHVFY ++E 
Sbjct: 215 KYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQAPDERNYHVFYCMLEG 261

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. Mediates intracellular transport of RPE65 in the retina pigment epithelium. In the inner ear, plays an important role in differentiation, morphogenesis and organization of cochlear hair cell bundles. Motor protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing. Involved in hair-cell vesicle trafficking of aminoglycosides, which are known to induce ototoxicity.

Mus musculus (taxid: 10090)

>sp|Q28970|MYO7A_PIG Unconventional myosin-VIIa (Fragment) OS=Sus scrofa GN=MYO7A PE=2 SV=1

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 126/167 (75%), Gaps = 1/167 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct: 98  TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 157

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct: 158 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 216

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEA 167
           K++ + F+ +  I+G  I+ YLLE+SR+  Q+P ERNYHVFY ++E 
Sbjct: 217 KYIDIHFNKRGAIEGARIEQYLLEKSRVCRQAPDERNYHVFYCMLEG 263

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. In the inner ear, plays an important role in differentiation, morphogenesis and organization of cochlear hair cell bundles. Motor protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing. Involved in hair-cell vesicle trafficking of aminoglycosides, which are known to induce ototoxicity.

Sus scrofa (taxid: 9823)

>sp|P91443|HUM6_CAEEL Unconventional myosin heavy chain 6 OS=Caenorhabditis elegans GN=hum-6 PE=1 SV=1

 Score =  197 bits (501), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 125/165 (75%), Gaps = 1/165 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
            YTG+IL+AVNPY ++ IYT  ++  Y   ++G   PH+FA+A+ AY++++    NQS +
Sbjct: 93  AYTGSILIAVNPYMDIAIYTADEIRMYKRKRIGELPPHIFAIADNAYTNMRREKKNQSVI 152

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK +LQ+L +++   S W+EQQ+LEAN +LEAFGNAKT+RNDNSSRFG
Sbjct: 153 ISGESGAGKTESTKLVLQFLATISGQHS-WIEQQVLEANPVLEAFGNAKTIRNDNSSRFG 211

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           K++ V F+    I+G  I+ YLLE+SRI  QS  ERNYH+FY L+
Sbjct: 212 KYIDVHFNESGSIEGAKIEQYLLEKSRIVTQSENERNYHIFYCLL 256

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments.

Caenorhabditis elegans (taxid: 6239)

>sp|Q622K8|HUM6_CAEBR Unconventional myosin heavy chain 6 OS=Caenorhabditis briggsae GN=hum-6 PE=3 SV=1

 Score =  197 bits (501), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 125/165 (75%), Gaps = 1/165 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
            YTG+IL+AVNPY ++ IYT  ++  Y   ++G   PH+FA+A+ AY++++    NQS +
Sbjct: 93  AYTGSILIAVNPYMDIAIYTADEIRMYKRKRIGELPPHIFAIADNAYTNMRREKKNQSVI 152

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK +LQ+L +++   S W+EQQ+LEAN +LEAFGNAKT+RNDNSSRFG
Sbjct: 153 ISGESGAGKTESTKLVLQFLATISGQHS-WIEQQVLEANPVLEAFGNAKTIRNDNSSRFG 211

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           K++ V F+    I+G  I+ YLLE+SRI  QS  ERNYH+FY L+
Sbjct: 212 KYIDVHFNESGSIEGAKIEQYLLEKSRIVTQSENERNYHIFYCLL 256

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q99MZ6|MYO7B_MOUSE Unconventional myosin-VIIb OS=Mus musculus GN=Myo7b PE=1 SV=3

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNP++ L +YT  +V  Y+   MG   PH+FA+A + Y +++    +Q C+
Sbjct: 96  TYTGSILVAVNPFQMLPLYTLEQVQIYYSRHMGELPPHIFAIANSCYFNMKKNKRDQCCI 155

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTK ILQ+L +V+   S W+EQQ+LEAN ILEAFGNAKT+RNDNSSRFG
Sbjct: 156 ISGESGAGKTETTKLILQFLATVSGQHS-WIEQQVLEANPILEAFGNAKTIRNDNSSRFG 214

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFY 162
           K++ + F+   +I+G  I+ +LLE+SR+  Q+P ERNYH+FY
Sbjct: 215 KYIDIHFNSSGVIEGASIEHFLLEKSRVCRQAPEERNYHIFY 256

Myosins are actin-based motor molecules with ATPase activity. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. May be have a role in the apical membranes of transporting epithelia.

Mus musculus (taxid: 10090)

>sp|Q9V3Z6|MYO7A_DROME Myosin-VIIa OS=Drosophila melanogaster GN=ck PE=1 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IYT  ++  Y   K+G   PH+FA+ + AY+ ++    +Q  V
Sbjct: 94  TYTGSILVAVNPYQILPIYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYRQDQCIV 153

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQYL ++ S   +W+EQQILEAN ILEAFGNAKT+RNDNSSRFG
Sbjct: 154 ISGESGAGKTESTKLILQYLAAI-SGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFG 212

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFY 162
           K++ + F    +I+G  I+ YLLE+SRI  Q+  ERNYHVFY
Sbjct: 213 KYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVFY 254

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.

Drosophila melanogaster (taxid: 7227)

>sp|Q17LW0|MYO7A_AEDAE Myosin-VIIa OS=Aedes aegypti GN=ck PE=3 SV=1

 Score =  195 bits (496), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 132/184 (71%), Gaps = 2/184 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IYT  ++  Y   K+G   PH+FA+ + +Y++++    +Q  V
Sbjct: 89  TYTGSILVAVNPYQILPIYTADQIKLYKERKIGELPPHIFAIGDNSYANMRRYGQDQCIV 148

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQYL ++ S   +W+EQQILEAN ILEAFGNAKTVRNDNSSRFG
Sbjct: 149 ISGESGAGKTESTKLILQYLAAI-SGKHSWIEQQILEANPILEAFGNAKTVRNDNSSRFG 207

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
           K++ + F+   +I+G  I+ YLLE+SRI  Q+  ERNYH+FY L+ A   S    K  + 
Sbjct: 208 KYIDIHFNNSGVIEGAEIEQYLLEKSRIVSQNAEERNYHIFYCLL-AGLSSDEKRKLNLG 266

Query: 181 YTSE 184
           Y S+
Sbjct: 267 YASD 270

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.

Aedes aegypti (taxid: 7159)

>sp|Q29P71|MYO7A_DROPS Myosin-VIIa OS=Drosophila pseudoobscura pseudoobscura GN=ck PE=3 SV=1

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IYT  ++  Y   K+G   PH+FA+ + AY+ ++    +Q  V
Sbjct: 94  TYTGSILVAVNPYQILPIYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYLQDQCIV 153

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQYL ++ S   +W+EQQILEAN ILEAFGNAKT+RNDNSSRFG
Sbjct: 154 ISGESGAGKTESTKLILQYLAAI-SGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFG 212

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFY 162
           K++ + F    +I+G  I+ YLLE+SRI  Q+  ERNYHVFY
Sbjct: 213 KYIDIHFSANGVIEGAKIEQYLLEKSRIVSQNHSERNYHVFY 254

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q13402|MYO7A_HUMAN Unconventional myosin-VIIa OS=Homo sapiens GN=MYO7A PE=1 SV=2

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 125/167 (74%), Gaps = 1/167 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct: 96  TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 155

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct: 156 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 214

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEA 167
           K++ + F+ +  I+G  I+ YLLE+SR+  Q+  ERNYHVFY ++E 
Sbjct: 215 KYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQALDERNYHVFYCMLEG 261

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. In the inner ear, plays an important role in differentiation, morphogenesis and organization of cochlear hair cell bundles. Involved in hair-cell vesicle trafficking of aminoglycosides, which are known to induce ototoxicity (By similarity). Motor protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
345492693	2266	PREDICTED: myosin-X [Nasonia vitripennis	0.608	0.074	0.886	8e-84
307201499	2262	Myosin-I heavy chain [Harpegnathos salta	0.608	0.074	0.880	1e-82
332018584	2216	Myosin-I heavy chain [Acromyrmex echinat	0.608	0.075	0.886	2e-82
383859871	2209	PREDICTED: unconventionnal myosin-X-like	0.608	0.076	0.886	3e-82
340713871	2217	PREDICTED: myosin-X-like [Bombus terrest	0.608	0.075	0.886	3e-82
350409651	2217	PREDICTED: myosin-X-like [Bombus impatie	0.608	0.075	0.886	3e-82
328784281	2208	PREDICTED: myosin-X [Apis mellifera]	0.608	0.076	0.886	3e-82
380024863	2219	PREDICTED: unconventionnal myosin-X-like	0.608	0.075	0.886	4e-82
328697745	2185	PREDICTED: myosin-VIIa-like [Acyrthosiph	0.630	0.079	0.827	5e-81
189239403	2164	PREDICTED: similar to myosin vii [Tribol	0.644	0.082	0.765	2e-77

>gi|345492693|ref|XP_001599387.2| PREDICTED: myosin-X [Nasonia vitripennis]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 156/168 (92%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+IL+AVNPYKE+D YT  +V  YHG KMG+ EPHVFALAEAAY SL++ D NQSCV
Sbjct: 42  TYTGSILIAVNPYKEVDFYTLQQVHRYHGQKMGALEPHVFALAEAAYRSLKDSDCNQSCV 101

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 102 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 161

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA
Sbjct: 162 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 209

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201499|gb|EFN81262.1| Myosin-I heavy chain [Harpegnathos saltator]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMG+ EPHVFALAEAAY SLQ+ + NQSCV
Sbjct: 46  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGALEPHVFALAEAAYRSLQDTESNQSCV 105

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 106 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 165

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVE  
Sbjct: 166 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVETG 213

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018584|gb|EGI59169.1| Myosin-I heavy chain [Acromyrmex echinatior]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMG+ EPHVFALAEAAY SLQ+   NQSCV
Sbjct: 41  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGALEPHVFALAEAAYKSLQDTVSNQSCV 100

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 101 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 160

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEA 
Sbjct: 161 KFMQVCFDNKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAG 208

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859871|ref|XP_003705415.1| PREDICTED: unconventionnal myosin-X-like [Megachile rotundata]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMGS EPHVFALAEAAY SLQ+ + NQSCV
Sbjct: 45  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGSLEPHVFALAEAAYRSLQDTESNQSCV 104

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 105 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 164

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQS GERNYHVFYQLVEA 
Sbjct: 165 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSAGERNYHVFYQLVEAG 212

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713871|ref|XP_003395458.1| PREDICTED: myosin-X-like [Bombus terrestris]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMGS EPHVFALAEAAY SLQ+ + NQSCV
Sbjct: 45  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGSLEPHVFALAEAAYRSLQDTESNQSCV 104

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 105 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 164

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQS GERNYHVFYQLVEA 
Sbjct: 165 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSSGERNYHVFYQLVEAG 212

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409651|ref|XP_003488805.1| PREDICTED: myosin-X-like [Bombus impatiens]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMGS EPHVFALAEAAY SLQ+ + NQSCV
Sbjct: 45  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGSLEPHVFALAEAAYRSLQDTESNQSCV 104

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 105 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 164

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQS GERNYHVFYQLVEA 
Sbjct: 165 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSSGERNYHVFYQLVEAG 212

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784281|ref|XP_396622.4| PREDICTED: myosin-X [Apis mellifera]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMGS EPHVFALAEAAY SLQ+ + NQSCV
Sbjct: 45  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGSLEPHVFALAEAAYRSLQDTESNQSCV 104

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 105 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 164

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQS GERNYHVFYQLVEA 
Sbjct: 165 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSAGERNYHVFYQLVEAG 212

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024863|ref|XP_003696209.1| PREDICTED: unconventionnal myosin-X-like [Apis florea]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/168 (88%), Positives = 153/168 (91%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPYKE+D YT   V  YHG KMGS EPHVFALAEAAY SLQ+ + NQSCV
Sbjct: 45  TYTGSILVAVNPYKEVDFYTNEYVNRYHGQKMGSLEPHVFALAEAAYRSLQDTESNQSCV 104

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNV TWVEQQILEANTILEAFGNAKTVRNDNSSRFG
Sbjct: 105 ISGESGAGKTETTKFILQYLCSVTSNVDTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 164

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KFMQVCFD KWMIKGCIIQDYLLEQSRITFQS GERNYHVFYQLVEA 
Sbjct: 165 KFMQVCFDSKWMIKGCIIQDYLLEQSRITFQSAGERNYHVFYQLVEAG 212

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697745|ref|XP_003240425.1| PREDICTED: myosin-VIIa-like [Acyrthosiphon pisum]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 144/174 (82%), Positives = 158/174 (90%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTGTILVAVNPYKEL IY+   V +YHG+K+G  EPHVFA+AEAAY+SLQ  D++QSCV
Sbjct: 58  TYTGTILVAVNPYKELGIYSNDYVFQYHGSKIGVLEPHVFAVAEAAYNSLQTGDIDQSCV 117

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILE+FGNAKT RNDNSSRFG
Sbjct: 118 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILESFGNAKTARNDNSSRFG 177

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSI 174
           KFMQVCFD +WMIKGCIIQDYLLEQSRITFQS GERNYHVFYQL E A+++  +
Sbjct: 178 KFMQVCFDGRWMIKGCIIQDYLLEQSRITFQSAGERNYHVFYQLAEGARHNKDL 231

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239403|ref|XP_973700.2| PREDICTED: similar to myosin vii [Tribolium castaneum]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/183 (76%), Positives = 157/183 (85%), Gaps = 5/183 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQ-----NLDV 55
           TYTG+ILVAVNPYK++DIY+Q  V +Y G K+G+ EPHVFALAEAAY+SLQ         
Sbjct: 63  TYTGSILVAVNPYKDIDIYSQHYVSKYQGKKLGAHEPHVFALAEAAYASLQADPSGKGHT 122

Query: 56  NQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDN 115
           NQS VISGESGAGKTE T+FILQYLCSVTS VSTWVEQQILEANTILEAFGNAKTVRNDN
Sbjct: 123 NQSLVISGESGAGKTENTRFILQYLCSVTSGVSTWVEQQILEANTILEAFGNAKTVRNDN 182

Query: 116 SSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSIN 175
           SSRFGKFMQVCFD +WMI GCIIQDYLLEQSR+TFQ PGERNYHVFYQLVE A+++  + 
Sbjct: 183 SSRFGKFMQVCFDSRWMIAGCIIQDYLLEQSRLTFQGPGERNYHVFYQLVEGAKHNKELA 242

Query: 176 KEI 178
            ++
Sbjct: 243 TQL 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
UNIPROTKB|Q28970	566	MYO7A "Unconventional myosin-V	0.597	0.291	0.554	6.1e-66
UNIPROTKB|F1PX69	596	MYO5B "Uncharacterized protein	0.663	0.307	0.483	2.9e-64
UNIPROTKB|B9A012	1178	MYO7A "Myosin VIIA, isoform CR	0.597	0.140	0.548	1.8e-63
UNIPROTKB|G3MZH3	654	G3MZH3 "Uncharacterized protei	0.688	0.290	0.459	2e-63
UNIPROTKB|E2RPH4	1829	MYO7A "Uncharacterized protein	0.597	0.090	0.554	2.1e-63
UNIPROTKB|F1PB31	2177	MYO7A "Uncharacterized protein	0.597	0.075	0.554	3.5e-63
UNIPROTKB|F1MHG0	2210	MYO7A "Uncharacterized protein	0.597	0.074	0.554	3.7e-63
ZFIN|ZDB-GENE-091110-4	2178	myo7ab "myosin VIIAb" [Danio r	0.583	0.073	0.567	4.2e-63
UNIPROTKB|Q6PIF6	2116	MYO7B "Unconventional myosin-V	0.673	0.087	0.510	6.6e-63
UNIPROTKB|C9J6C0	2117	MYO7B "Unconventional myosin-V	0.673	0.087	0.510	6.6e-63

UNIPROTKB|Q28970 MYO7A "Unconventional myosin-VIIa" [Sus scrofa (taxid:9823)]

 Score = 495 (179.3 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
 Identities = 92/166 (55%), Positives = 126/166 (75%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct:    98 TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 157

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct:   158 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 216

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVE 166
             K++ + F+ +  I+G  I+ YLLE+SR+  Q+P ERNYHVFY ++E
Sbjct:   217 KYIDIHFNKRGAIEGARIEQYLLEKSRVCRQAPDERNYHVFYCMLE 262

GO:0005938 "cell cortex" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1PX69 MYO5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 470 (170.5 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 90/186 (48%), Positives = 129/186 (69%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TY G +LVA+NPY++L IY Q  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct:   105 TYCGIVLVAINPYEQLPIYGQDVIYAYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSII 164

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVS-TWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
             +SGESGAGKT + K+ ++Y  +V  + S T +E+++L ++ I+EA GNAKT RNDNSSRF
Sbjct:   165 VSGESGAGKTVSAKYAMRYFATVGGSASDTNIEEKVLASSPIMEAIGNAKTTRNDNSSRF 224

Query:   120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
             GK++Q+ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  AA       KE+M
Sbjct:   225 GKYIQIGFDKRYHIIGANMRTYLLEKSRVVFQAEDERNYHIFYQLCAAASLPEF--KELM 282

Query:   180 HYTSEE 185
                +E+
Sbjct:   283 LTCAED 288

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|B9A012 MYO7A "Myosin VIIA, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 485 (175.8 bits), Expect = 1.8e-63, Sum P(2) = 1.8e-63
 Identities = 91/166 (54%), Positives = 125/166 (75%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct:    96 TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 155

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct:   156 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 214

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVE 166
             K++ + F+ +  I+G  I+ YLLE+SR+  Q+  ERNYHVFY ++E
Sbjct:   215 KYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQALDERNYHVFYCMLE 260

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|G3MZH3 G3MZH3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 463 (168.0 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 90/196 (45%), Positives = 133/196 (67%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct:    90 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 149

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTW-VEQQILEANTILEAFGNAKTVRNDNSSRF 119
             +SGESGAGKT + K+ ++Y  +V+ + S   VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct:   150 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 209

Query:   120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSS-SI---- 174
             GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A  S   +    
Sbjct:   210 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASADLSEFKVLRLG 269

Query:   175 NKEIMHYTSEEKSHVI 190
             +    HYT++  S VI
Sbjct:   270 DANNFHYTNQGGSPVI 285

GO:0051015 "actin filament binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|E2RPH4 MYO7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 495 (179.3 bits), Expect = 2.1e-63, Sum P(2) = 2.1e-63
 Identities = 92/166 (55%), Positives = 126/166 (75%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct:    96 TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 155

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct:   156 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 214

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVE 166
             K++ + F+ +  I+G  I+ YLLE+SR+  Q+P ERNYHVFY ++E
Sbjct:   215 KYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQAPDERNYHVFYCMLE 260

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1PB31 MYO7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 495 (179.3 bits), Expect = 3.5e-63, Sum P(2) = 3.5e-63
 Identities = 92/166 (55%), Positives = 126/166 (75%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct:    96 TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 155

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct:   156 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 214

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVE 166
             K++ + F+ +  I+G  I+ YLLE+SR+  Q+P ERNYHVFY ++E
Sbjct:   215 KYIDIHFNKRGAIEGAKIEQYLLEKSRVCRQAPDERNYHVFYCMLE 260

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1MHG0 MYO7A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 495 (179.3 bits), Expect = 3.7e-63, Sum P(2) = 3.7e-63
 Identities = 92/166 (55%), Positives = 126/166 (75%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNPY+ L IY+   + +Y   K+G   PH+FA+A+  Y +++    +Q C+
Sbjct:    95 TYTGSILVAVNPYQLLSIYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCI 154

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEA  ILEAFGNAKT+RNDNSSRFG
Sbjct:   155 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFG 213

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVE 166
             K++ + F+ +  I+G  I+ YLLE+SR+  Q+P ERNYHVFY ++E
Sbjct:   214 KYIDIHFNKRGAIEGARIEQYLLEKSRVCRQAPDERNYHVFYCMLE 259

GO:0060088 "auditory receptor cell stereocilium organization" evidence=IEA

GO:0051904 "pigment granule transport" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0050957 "equilibrioception" evidence=IEA

GO:0048563 "post-embryonic organ morphogenesis" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0001845 "phagolysosome assembly" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-091110-4 myo7ab "myosin VIIAb" [Danio rerio (taxid:7955)]

 Score = 490 (177.5 bits), Expect = 4.2e-63, Sum P(3) = 4.2e-63
 Identities = 92/162 (56%), Positives = 122/162 (75%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNPY+ L IYT  ++  Y   K+G   PH+F +A+  Y S+Q    +Q C+
Sbjct:    96 TYTGSILVAVNPYQLLPIYTPDQIRLYTNKKIGEMPPHIFGIADNCYFSMQRNKKDQCCI 155

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTE+TK ILQ+L +++   S W+EQQ+LEAN ILEAFGNAKT+RNDNSSRFG
Sbjct:   156 ISGESGAGKTESTKLILQFLAAISGQHS-WIEQQVLEANPILEAFGNAKTIRNDNSSRFG 214

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFY 162
             K++ + F+ +  I+G  I+ YLLE+SR+  Q+  ERNYH+FY
Sbjct:   215 KYVDIHFNKRGAIEGAKIEQYLLEKSRVCRQAADERNYHIFY 256

GO:0016459 "myosin complex" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q6PIF6 MYO7B "Unconventional myosin-VIIb" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 6.6e-63, Sum P(2) = 6.6e-63
 Identities = 97/190 (51%), Positives = 137/190 (72%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNP++ L +YT  +V  Y+   MG   PHVFA+A   Y S++    +Q C+
Sbjct:    96 TYTGSILVAVNPFQVLPLYTLEQVQLYYSRHMGELPPHVFAIANNCYFSMKRNKRDQCCI 155

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTETTK ILQ+L +++   S W+EQQ+LEAN ILEAFGNAKT+RNDNSSRFG
Sbjct:   156 ISGESGAGKTETTKLILQFLATISGQHS-WIEQQVLEANPILEAFGNAKTIRNDNSSRFG 214

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
             K++ + F+P  +I+G  I+ +LLE+SR+  Q+P ERNYH+FY ++      S+ +K+++ 
Sbjct:   215 KYIDIYFNPSGVIEGARIEQFLLEKSRVCRQAPEERNYHIFYCMLMGV---SAEDKQLLS 271

Query:   181 YTSEEKSHVI 190
               +  + H +
Sbjct:   272 LGTPSEYHYL 281

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

UNIPROTKB|C9J6C0 MYO7B "Unconventional myosin-VIIb" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 6.6e-63, Sum P(2) = 6.6e-63
 Identities = 97/190 (51%), Positives = 137/190 (72%)

Query:     1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
             TYTG+ILVAVNP++ L +YT  +V  Y+   MG   PHVFA+A   Y S++    +Q C+
Sbjct:    96 TYTGSILVAVNPFQVLPLYTLEQVQLYYSRHMGELPPHVFAIANNCYFSMKRNKRDQCCI 155

Query:    61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
             ISGESGAGKTETTK ILQ+L +++   S W+EQQ+LEAN ILEAFGNAKT+RNDNSSRFG
Sbjct:   156 ISGESGAGKTETTKLILQFLATISGQHS-WIEQQVLEANPILEAFGNAKTIRNDNSSRFG 214

Query:   121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
             K++ + F+P  +I+G  I+ +LLE+SR+  Q+P ERNYH+FY ++      S+ +K+++ 
Sbjct:   215 KYIDIYFNPSGVIEGARIEQFLLEKSRVCRQAPEERNYHIFYCMLMGV---SAEDKQLLS 271

Query:   181 YTSEEKSHVI 190
               +  + H +
Sbjct:   272 LGTPSEYHYL 281

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P97479	MYO7A_MOUSE	No assigned EC number	0.5508	0.6014	0.0749	yes	N/A
P91443	HUM6_CAEEL	No assigned EC number	0.5515	0.5942	0.0781	yes	N/A
P08799	MYS2_DICDI	No assigned EC number	0.5238	0.6594	0.0860	yes	N/A
Q6PIF6	MYO7B_HUMAN	No assigned EC number	0.5105	0.6739	0.0879	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	276
smart00242	677	smart00242, MYSc, Myosin	9e-89
cd00124	679	cd00124, MYSc, Myosin motor domain	5e-88
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	2e-76
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	6e-74
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	5e-73
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	1e-70
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	2e-70
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	2e-69
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	1e-68
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	6e-62
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	2e-61
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	4e-54
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	9e-54
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	6e-52
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	9e-50
cd00124	679	cd00124, MYSc, Myosin motor domain	5e-31
smart00242	677	smart00242, MYSc, Myosin	5e-30
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	4e-29
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	2e-27
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	5e-26
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	3e-25
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	7e-25
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	1e-24
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	5e-23
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	5e-20
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	2e-19
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	4e-19
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	2e-17
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	3e-17
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	1e-15
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	8e-15
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	3e-07

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  277 bits (710), Expect = 9e-89
 Identities = 100/170 (58%), Positives = 125/170 (73%), Gaps = 2/170 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVAVNPYK+L IYT   + +Y G   G   PHVFA+A+ AY ++ N   NQS +
Sbjct: 37  TYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSII 96

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVS--TWVEQQILEANTILEAFGNAKTVRNDNSSR 118
           ISGESGAGKTE TK I+QYL SV+ + +    VE QILE+N ILEAFGNAKT+RN+NSSR
Sbjct: 97  ISGESGAGKTENTKKIMQYLASVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNNSSR 156

Query: 119 FGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           FGKF+++ FD K  I G  I+ YLLE+SR+  Q+ GERNYH+FYQL+  A
Sbjct: 157 FGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGA 206

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  274 bits (704), Expect = 5e-88
 Identities = 104/238 (43%), Positives = 136/238 (57%), Gaps = 14/238 (5%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G IL+AVNPYK+L  Y    + +Y G       PHVFA+A+ AY ++     NQS +
Sbjct: 31  TYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSII 90

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE TK I++YL S+  +  T +E++IL AN ILEAFGNAKTVRN+NSSRFG
Sbjct: 91  ISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFG 150

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
           KF+++ FD    I G  I  YLLE+SR+  Q PGERN+H+FYQL+  A  S    K+ + 
Sbjct: 151 KFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGA--SPEERKK-LG 207

Query: 181 YTSEEKSHVIWVFAWLVNHINTCTNPGQ-DSTRF---LGVLDIFGFENFAVNSFEQLC 234
               E           +N        G  D+  F      L   GF    + S  ++ 
Sbjct: 208 LKRPESYR-------YLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRIL 258

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score =  244 bits (625), Expect = 2e-76
 Identities = 94/171 (54%), Positives = 125/171 (73%), Gaps = 3/171 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G +L++VNPYK L IYT+  + EY G + G   PH+FALA+ AY  +     NQ  V
Sbjct: 30  TYSGLVLISVNPYKRLPIYTEEPIGEYRGKRRGELPPHIFALADRAYRHMLRDKENQCIV 89

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---VEQQILEANTILEAFGNAKTVRNDNSS 117
           ISGESGAGKTE TK ++QYL SV+ +  +    +E QIL++N ILEAFGNAKT+RN+NSS
Sbjct: 90  ISGESGAGKTENTKKLMQYLASVSGSTPSAVGPLEDQILQSNPILEAFGNAKTLRNNNSS 149

Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           RFGKF+++ FD    I G  I+ YLLE+SR+ +Q+PGERN+H+FYQL+  A
Sbjct: 150 RFGKFIEIQFDATGSIVGGNIETYLLEKSRVVYQTPGERNFHIFYQLLAGA 200

Length = 679

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  238 bits (608), Expect = 6e-74
 Identities = 94/168 (55%), Positives = 125/168 (74%), Gaps = 1/168 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TYTG+ILVAVNPY+ L IYT  ++  Y    +G   PH+FA+++ AY+++Q    NQ  +
Sbjct: 31  TYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCII 90

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTE+TK ILQYL ++ S   +W+EQQILEAN ILEAFGNAKT+RNDNSSRFG
Sbjct: 91  ISGESGAGKTESTKLILQYLAAI-SGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFG 149

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           K++ + F+ +  I+G  I+ YLLE+SRI  Q+  ERNYH+FY ++   
Sbjct: 150 KYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGL 197

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score =  235 bits (603), Expect = 5e-73
 Identities = 96/173 (55%), Positives = 118/173 (68%), Gaps = 9/173 (5%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   VAVNPYK L IYT+  V  Y G K     PH+FA+A+ AY S+     NQS +
Sbjct: 36  TYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSIL 95

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---------VEQQILEANTILEAFGNAKTV 111
           I+GESGAGKTE TK ++QYL SV ++             +E QIL+AN ILEAFGNAKTV
Sbjct: 96  ITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTV 155

Query: 112 RNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQL 164
           RNDNSSRFGKF+++ F     I G  I+ YLLE+SR+ FQ+ GERNYH+FYQL
Sbjct: 156 RNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQL 208

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score =  235 bits (602), Expect = 1e-70
 Identities = 95/171 (55%), Positives = 121/171 (70%), Gaps = 3/171 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G +L+AVNPY++L IYT   +  Y G      EPHVFA+AE AY +L +   NQ+ +
Sbjct: 97  TYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTII 156

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---VEQQILEANTILEAFGNAKTVRNDNSS 117
           ISGESGAGKTE  K I+QYL SVTS+ +     +E+QIL  N ILEAFGNAKTVRNDNSS
Sbjct: 157 ISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSS 216

Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           RFGK++++ FD    I G  I+ YLLE+SR+  Q+  ERNYH+FYQL+   
Sbjct: 217 RFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGD 267

Length = 1463

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score =  229 bits (585), Expect = 2e-70
 Identities = 85/170 (50%), Positives = 119/170 (70%), Gaps = 2/170 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +L++VNP+K+L IYT   +  Y G       PH++ALA+ AY S+++ + NQ  +
Sbjct: 31  TYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVI 90

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVST--WVEQQILEANTILEAFGNAKTVRNDNSSR 118
           ISGESGAGKTE  K I+QY+ +V+        V+  IL++N +LEAFGNAKT+RN+NSSR
Sbjct: 91  ISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSR 150

Query: 119 FGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           FGK+M++ FD K    G  I +YLLE+SR+  Q+ GERN+H+FYQL+  A
Sbjct: 151 FGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGA 200

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  226 bits (579), Expect = 2e-69
 Identities = 96/202 (47%), Positives = 134/202 (66%), Gaps = 14/202 (6%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G +LVA+NPY  L IY +  +  Y G + G  +PH+FA+AE AY  +   + NQS +
Sbjct: 31  TYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSII 90

Query: 61  ISGESGAGKTETTKFILQYLCSV----TSNVS-TWVEQQILEANTILEAFGNAKTVRNDN 115
           +SGESGAGKT + K+I++Y  SV    +  VS T VE+++L +N I+EAFGNAKT RNDN
Sbjct: 91  VSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDN 150

Query: 116 SSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSIN 175
           SSRFGK++Q+ FD +  I G  ++ YLLE+SR+ FQ+PGERNYH+FYQL   A   S   
Sbjct: 151 SSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGA--PSQEL 208

Query: 176 KEI-------MHYTSEEKSHVI 190
           KE+        +Y ++  +  I
Sbjct: 209 KELHLGHADKFNYLNQGGAPTI 230

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  224 bits (572), Expect = 1e-68
 Identities = 92/175 (52%), Positives = 121/175 (69%), Gaps = 8/175 (4%)

Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TYTG IL+AVNP++ L  +Y    + +Y GA +G   PHVFA+A+AAY ++ N   +QS 
Sbjct: 32  TYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSI 91

Query: 60  VISGESGAGKTETTKFILQYLC-----SVTSNVSTWVEQQILEANTILEAFGNAKTVRND 114
           ++SGESGAGKTETTK +++YL      +     +  VEQQ+LE+N +LEAFGNAKTVRN+
Sbjct: 92  LVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRT--VEQQVLESNPVLEAFGNAKTVRNN 149

Query: 115 NSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
           NSSRFGKF+++ FD    I G  I+ YLLE+SR+   S  ERNYH FYQL  A  
Sbjct: 150 NSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPP 204

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score =  206 bits (527), Expect = 6e-62
 Identities = 85/169 (50%), Positives = 120/169 (71%), Gaps = 2/169 (1%)

Query: 1   TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  +Y+   + +Y G  +G+  PHVFA+A+ AY  ++ L ++QS 
Sbjct: 35  TYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSI 94

Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 95  IVSGESGAGKTENTKFVLRYLTE-SYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 153

Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           GKF+++ F+ K  + G  +  YLLE+SRI  QS  ERNYH+FY+L   A
Sbjct: 154 GKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGA 202

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score =  204 bits (521), Expect = 2e-61
 Identities = 88/165 (53%), Positives = 117/165 (70%), Gaps = 1/165 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G+ILV+VNPYK   IY   +V +Y G  +G   PH+FA+A  A++ + +   NQ  +
Sbjct: 32  TYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVI 91

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESG+GKTE TK IL+YL ++    S  + +QILEA  +LEAFGNAKTVRNDNSSRFG
Sbjct: 92  ISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFG 151

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           KF+++  +   +I G I   YLLE+SRI FQ+  ERNYH+FY+L+
Sbjct: 152 KFVEIFLEGG-VIVGAITSQYLLEKSRIVFQAKNERNYHIFYELL 195

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score =  185 bits (471), Expect = 4e-54
 Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 4/168 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           T  G +LVAVNP+KE+ +Y    +  Y      S  PHV+A+A+ AY+ +   +VNQS +
Sbjct: 39  TKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDS--PHVYAIADTAYNEMMRDEVNQSII 96

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESGAGKTET K  +QYL S+     + +E +IL+ N ILEAFGNAKT RNDNSSRFG
Sbjct: 97  ISGESGAGKTETAKIAMQYLASLGG--GSGIEYEILQTNPILEAFGNAKTSRNDNSSRFG 154

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           K +++ F     I G  IQ +LLE+SR+   + GER+YH+FYQL   A
Sbjct: 155 KLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGA 202

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  184 bits (469), Expect = 9e-54
 Identities = 87/171 (50%), Positives = 115/171 (67%), Gaps = 3/171 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAK-MGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY G+ILVAVNP+K L IY    V  Y   + +G   PH+FA+A+ AY ++    VNQ  
Sbjct: 38  TYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCI 97

Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTW--VEQQILEANTILEAFGNAKTVRNDNSS 117
           VISGESG+GKTE+T F++ +L +++        VEQ IL A  +LEAFGNAKT  N+NSS
Sbjct: 98  VISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSS 157

Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           RFGKF+QV +    M++G +++ YLLE+SRI  Q   ERNYHVFY L+  A
Sbjct: 158 RFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGA 208

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score =  179 bits (455), Expect = 6e-52
 Identities = 79/189 (41%), Positives = 120/189 (63%), Gaps = 5/189 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G IL+AVNP+++L +YT      Y G K  S  PH+FA+A+AAY SL   + +Q  V
Sbjct: 31  TYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIV 90

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
           ISGESG+GKTE+   ++Q L  +    +  ++++IL+ N+++EAFGNA+T  NDNSSRFG
Sbjct: 91  ISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFG 150

Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
           K++++ F     + G  I +YLLE+SR+  Q+ GE+N+H+FY +           K++  
Sbjct: 151 KYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAE----EKKLAE 206

Query: 181 YT-SEEKSH 188
           Y   E K+ 
Sbjct: 207 YKLPESKTP 215

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score =  174 bits (444), Expect = 9e-50
 Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 2/165 (1%)

Query: 6   ILVAVNPYKELDIYTQSKVCEYHGAKMGSQ-EPHVFALAEAAYSSLQNLDVNQSCVISGE 64
           +LVA+NP+K+L   T   +  Y  AK   +  PHVF  A  A  +L  +  +Q+ ++SGE
Sbjct: 132 LLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGE 191

Query: 65  SGAGKTETTKFILQYLCS-VTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFM 123
           SGAGKTE TK I++Y  S  + N+   ++  I+ AN +LEAFGNAKT+RN+NSSRFG+FM
Sbjct: 192 SGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFM 251

Query: 124 QVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           Q+    +  I+   I  +LLE+SR+  Q   ER+YH+FYQL++ A
Sbjct: 252 QLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGA 296

Length = 821

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  121 bits (305), Expect = 5e-31
 Identities = 39/66 (59%), Positives = 47/66 (71%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F W+V+ IN+   P    + F+G+LDIFGFE F  NSFEQLCINY NEKL +FFN +VF 
Sbjct: 343 FDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFK 402

Query: 253 LEQEIV 258
           LEQE  
Sbjct: 403 LEQEEY 408

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  118 bits (297), Expect = 5e-30
 Identities = 42/64 (65%), Positives = 47/64 (73%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV  IN   +    ST F+GVLDI+GFE F VNSFEQLCINY NEKL +FFN +VF 
Sbjct: 350 FDWLVKRINQSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFK 409

Query: 253 LEQE 256
           LEQE
Sbjct: 410 LEQE 413

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score =  115 bits (290), Expect = 4e-29
 Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 4/190 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           T  G  L+ +NP   L +Y++     + G K     PH+++LA+ AY +L     +QS +
Sbjct: 31  TCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSII 90

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEAN-TILEAFGNAKTVRNDNSSRF 119
             G SGAGKT + K  L+YL     +V   V  + + A  TILEAFGN  T  N N++RF
Sbjct: 91  FLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRF 150

Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEI- 178
            + + + FD    I    +Q  LLE+SR+  +  GE N+ VF QL+  A     +  E+ 
Sbjct: 151 TQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLL--AGVDGDLRTELH 208

Query: 179 MHYTSEEKSH 188
           +   +E  S 
Sbjct: 209 LEQMAESSSF 218

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score =  110 bits (278), Expect = 2e-27
 Identities = 41/64 (64%), Positives = 46/64 (71%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV  IN   +  Q    F+GVLDI GFE F  NSFEQLCINYTNEKL +FFNH++F 
Sbjct: 355 FLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFV 414

Query: 253 LEQE 256
           LEQE
Sbjct: 415 LEQE 418

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score =  107 bits (268), Expect = 5e-26
 Identities = 38/65 (58%), Positives = 49/65 (75%)

Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V+ IN   +    ++ F+GVLDI+GFE F  NSFEQLCINYTNEKL +FFN ++F
Sbjct: 408 LFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMF 467

Query: 252 ALEQE 256
            LEQE
Sbjct: 468 KLEQE 472

Length = 1463

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  104 bits (261), Expect = 3e-25
 Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 192 VFAWLVNHINTCTN-PGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W+V  IN     P Q S   +GVLDIFGFENF VNSFEQLCIN+ NE L +FF  ++
Sbjct: 341 LFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400

Query: 251 FALEQE 256
           F LEQE
Sbjct: 401 FKLEQE 406

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  103 bits (259), Expect = 7e-25
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLVN IN+      DS   +GVLDI+GFE+F  NSFEQ CIN TNEKL + FN +VF 
Sbjct: 348 FDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFK 407

Query: 253 LEQE 256
           +EQE
Sbjct: 408 MEQE 411

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  102 bits (257), Expect = 1e-24
 Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 3/68 (4%)

Query: 192 VFAWLVNHINTCTNPG---QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNH 248
           +F W+V+ IN   N G   +  T F+GVLDI+GFE F  NSFEQ CINY NEKL + FN 
Sbjct: 345 LFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQ 404

Query: 249 YVFALEQE 256
           +VF LEQE
Sbjct: 405 HVFKLEQE 412

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score = 97.8 bits (244), Expect = 5e-23
 Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 193 FAWLVNHIN-TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           F W+V  IN   +   Q +  F+GVLDI+GFE F  NSFEQLCINY NEKL +FFNH++F
Sbjct: 343 FDWIVGKINEALSAKLQKAAAFIGVLDIYGFEIFEKNSFEQLCINYANEKLQQFFNHHMF 402

Query: 252 ALEQE 256
            LEQE
Sbjct: 403 KLEQE 407

Length = 679

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score = 89.1 bits (221), Expect = 5e-20
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +V+ +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 378 LFDHVVSRVNQCF-PFETSSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 436

Query: 252 ALEQEI 257
             EQE+
Sbjct: 437 KEEQEL 442

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score = 87.3 bits (216), Expect = 2e-19
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 4/79 (5%)

Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WL+  +N   +P QD+   + +LDI+GFE+ + NSFEQLCINY NE L   FN  VF
Sbjct: 342 LFNWLITRVNALVSPTQDTLS-IAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVF 400

Query: 252 ALEQEIVSISIKPRLELTE 270
             EQE     I+ +L+ TE
Sbjct: 401 QEEQEEY---IREQLDWTE 416

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score = 86.8 bits (215), Expect = 4e-19
 Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 5/70 (7%)

Query: 192 VFAWLVNHINTC----TNPGQDSTRF-LGVLDIFGFENFAVNSFEQLCINYTNEKLHKFF 246
           +F+W+VN IN+      N    S +  +G+LDIFGFENF  NSFEQLCIN  NE++  +F
Sbjct: 348 LFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYF 407

Query: 247 NHYVFALEQE 256
           N ++FA EQ+
Sbjct: 408 NQHIFAWEQQ 417

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 192 VFAWLVNHINTCTNPGQDST-RFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F WLV  IN     G+  T R + +LDI+GFE+F  NSFEQ CINY NE+L + FN ++
Sbjct: 344 LFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHL 403

Query: 251 FALEQE 256
           F LEQE
Sbjct: 404 FKLEQE 409

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 193 FAWLVNHINTCTNPGQDSTRF-LGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           F WLV+ IN             +GVLDI+GFE F  NSFEQ CINY NEKL + F     
Sbjct: 346 FDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTL 405

Query: 252 ALEQE 256
             EQE
Sbjct: 406 KAEQE 410

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 30/64 (46%), Positives = 37/64 (57%)

Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W++ ++N    P      F+G+LDIFGFE F  NS EQL IN TNE L K F   VF
Sbjct: 442 LFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501

Query: 252 ALEQ 255
             E 
Sbjct: 502 ERES 505

Length = 821

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score = 73.8 bits (181), Expect = 8e-15
 Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 192 VFAWLVNHINTCTNPGQDST---RFLGVLDIFGFENFA-VNSFEQLCINYTNEKLHKFFN 247
           +F W+V  IN       D       +GVLDIFGFE+F   NSFEQLCINY NE+L  +FN
Sbjct: 353 LFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFN 412

Query: 248 HYVFALEQE 256
            ++F LEQE
Sbjct: 413 QHIFKLEQE 421

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 54  DVNQSCVISGESGAGKTETTKF------ILQYLCSVTSNVSTWVEQQILEANTILEAFG- 106
             N      G++G+GKT T +       I+                 +++      A   
Sbjct: 22  GYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTV-----------TDVIDLMDKGNANRT 70

Query: 107 NAKTVRNDNSSRFGKFMQVCF 127
            A T  N++SSR     ++ F
Sbjct: 71  TAATAMNEHSSRSHSVFRIHF 91

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
PTZ00014	821	myosin-A; Provisional	100.0
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	100.0
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	100.0
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	100.0
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	100.0
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	100.0
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
KOG0164|consensus	1001		100.0
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	100.0
KOG0161|consensus	1930		100.0
KOG0162|consensus	1106		100.0
KOG0163|consensus	1259		100.0
KOG0160|consensus	862		100.0
KOG4229|consensus	1062		100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	98.84
KOG0925|consensus	699		96.63
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.6
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.24
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.18
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.13
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.01
smart00382	148	AAA ATPases associated with a variety of cellular	95.79
PF00004	132	AAA: ATPase family associated with various cellula	95.78
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.75
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.69
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.48
PRK05480	209	uridine/cytidine kinase; Provisional	95.43
PRK06762	166	hypothetical protein; Provisional	95.4
PRK07261	171	topology modulation protein; Provisional	95.38
PRK00300	205	gmk guanylate kinase; Provisional	95.36
PRK06696	223	uridine kinase; Validated	95.34
PRK05541	176	adenylylsulfate kinase; Provisional	95.31
PRK08118	167	topology modulation protein; Reviewed	95.31
PRK08233	182	hypothetical protein; Provisional	95.23
PRK00131	175	aroK shikimate kinase; Reviewed	95.2
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	95.19
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.18
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	95.16
PF05729	166	NACHT: NACHT domain	95.15
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	95.13
PHA02544	316	44 clamp loader, small subunit; Provisional	95.11
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	95.03
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.01
PRK12402	337	replication factor C small subunit 2; Reviewed	95.0
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	94.97
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.94
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	94.93
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	94.92
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.92
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	94.9
PRK06547	172	hypothetical protein; Provisional	94.9
PLN03025	319	replication factor C subunit; Provisional	94.88
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.88
PRK13833	323	conjugal transfer protein TrbB; Provisional	94.86
PRK08084	235	DNA replication initiation factor; Provisional	94.84
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.81
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	94.78
KOG0924|consensus	1042		94.76
PF12846	304	AAA_10: AAA-like domain	94.74
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.73
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	94.7
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	94.69
PTZ00301	210	uridine kinase; Provisional	94.69
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	94.67
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.63
PRK00440	319	rfc replication factor C small subunit; Reviewed	94.62
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	94.59
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	94.57
PRK06217	183	hypothetical protein; Validated	94.55
PRK00889	175	adenylylsulfate kinase; Provisional	94.54
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	94.52
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	94.51
PF13245	76	AAA_19: Part of AAA domain	94.51
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.5
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.5
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.44
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.44
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	94.44
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	94.39
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	94.37
PRK14737	186	gmk guanylate kinase; Provisional	94.34
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	94.34
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.27
PRK08903	227	DnaA regulatory inactivator Hda; Validated	94.18
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.17
PRK13342	413	recombination factor protein RarA; Reviewed	94.14
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.14
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.13
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.09
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	94.07
PRK03846	198	adenylylsulfate kinase; Provisional	94.05
PRK14738	206	gmk guanylate kinase; Provisional	94.02
PRK13851	344	type IV secretion system protein VirB11; Provision	93.96
COG1660	286	Predicted P-loop-containing kinase [General functi	93.95
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	93.93
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	93.93
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	93.9
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	93.85
PRK04182	180	cytidylate kinase; Provisional	93.84
PRK12377	248	putative replication protein; Provisional	93.83
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	93.82
PRK05057	172	aroK shikimate kinase I; Reviewed	93.71
PRK04040	188	adenylate kinase; Provisional	93.69
PRK06893	229	DNA replication initiation factor; Validated	93.65
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	93.62
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.58
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	93.57
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	93.56
PRK14531	183	adenylate kinase; Provisional	93.52
KOG0922|consensus	674		93.51
PRK14527	191	adenylate kinase; Provisional	93.51
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	93.49
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	93.46
PRK09825	176	idnK D-gluconate kinase; Provisional	93.44
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	93.41
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	93.37
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	93.34
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.34
PRK03839	180	putative kinase; Provisional	93.33
PRK08727	233	hypothetical protein; Validated	93.27
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	93.27
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	93.25
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	93.23
PHA00729	226	NTP-binding motif containing protein	93.2
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	93.17
PF13555	62	AAA_29: P-loop containing region of AAA domain	93.15
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	93.14
PHA02530	300	pseT polynucleotide kinase; Provisional	93.12
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	93.11
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	93.1
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	93.07
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	93.06
PF00005	137	ABC_tran: ABC transporter This structure is on hol	93.03
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	93.02
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	93.0
PRK07667	193	uridine kinase; Provisional	92.95
cd03115	173	SRP The signal recognition particle (SRP) mediates	92.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	92.86
PRK04195	482	replication factor C large subunit; Provisional	92.85
PRK14528	186	adenylate kinase; Provisional	92.85
TIGR02533	486	type_II_gspE general secretory pathway protein E.	92.78
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	92.77
PTZ00112	1164	origin recognition complex 1 protein; Provisional	92.76
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	92.72
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	92.66
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	92.66
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	92.63
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	92.63
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	92.6
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	92.6
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	92.57
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	92.52
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	92.52
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	92.51
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	92.48
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	92.48
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	92.47
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	92.42
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	92.42
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	92.41
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	92.4
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	92.38
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	92.36
PRK13341	725	recombination factor protein RarA/unknown domain f	92.36
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	92.33
PRK06761	282	hypothetical protein; Provisional	92.33
PRK12608	380	transcription termination factor Rho; Provisional	92.33
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	92.31
PRK14530	215	adenylate kinase; Provisional	92.28
PRK08356	195	hypothetical protein; Provisional	92.28
PRK00698	205	tmk thymidylate kinase; Validated	92.26
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	92.25
PRK03731	171	aroL shikimate kinase II; Reviewed	92.24
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	92.24
PRK13947	171	shikimate kinase; Provisional	92.24
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	92.24
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	92.23
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	92.21
PRK08116	268	hypothetical protein; Validated	92.21
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	92.21
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	92.19
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	92.18
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	92.18
PF07475	171	Hpr_kinase_C: HPr Serine kinase C-terminal domain;	92.16
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	92.15
PRK13764	602	ATPase; Provisional	92.14
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	92.13
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	92.12
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	92.11
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	92.11
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	92.11
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	92.08
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.08
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	92.08
PF13173	128	AAA_14: AAA domain	92.06
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	92.06
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	92.05
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	92.05
cd03269	210	ABC_putative_ATPase This subfamily is involved in	92.02
PRK02496	184	adk adenylate kinase; Provisional	92.01
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	92.01
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	92.0
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	92.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	92.0
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	91.99
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	91.99
PRK06620	214	hypothetical protein; Validated	91.98
PRK13946	184	shikimate kinase; Provisional	91.97
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	91.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	91.96
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	91.95
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	91.92
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	91.92
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	91.91
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	91.9
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	91.9
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	91.87
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	91.85
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	91.85
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	91.84
PRK15453	290	phosphoribulokinase; Provisional	91.84
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	91.83
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	91.81
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	91.77
PRK09112	351	DNA polymerase III subunit delta'; Validated	91.76
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	91.75
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	91.75
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	91.73
PRK10908	222	cell division protein FtsE; Provisional	91.7
cd03116	159	MobB Molybdenum is an essential trace element in t	91.69
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	91.65
COG0802	149	Predicted ATPase or kinase [General function predi	91.65
COG0630	312	VirB11 Type IV secretory pathway, VirB11 component	91.63
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	91.63
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	91.62
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	91.6
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	91.59
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	91.58
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	91.58
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	91.57
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	91.56
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	91.55
PRK14974	336	cell division protein FtsY; Provisional	91.54
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	91.54
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	91.52
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	91.51
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	91.5
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	91.49
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	91.44
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	91.41
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	91.41
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	91.4
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	91.39
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	91.38
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	91.36
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	91.35
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	91.35
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	91.35
PRK13695	174	putative NTPase; Provisional	91.34
PRK00625	173	shikimate kinase; Provisional	91.32
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	91.32
cd03234	226	ABCG_White The White subfamily represents ABC tran	91.32
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	91.31
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	91.3
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	91.28
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	91.27
PRK10436	462	hypothetical protein; Provisional	91.26
PRK13949	169	shikimate kinase; Provisional	91.25
cd02034	116	CooC The accessory protein CooC, which contains a	91.25
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	91.24
PRK00279	215	adk adenylate kinase; Reviewed	91.23
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	91.23
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	91.2
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	91.19
PRK14532	188	adenylate kinase; Provisional	91.18
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	91.16
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	91.13
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	91.12
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	91.12
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	91.11
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	91.09
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	91.06
PRK10416	318	signal recognition particle-docking protein FtsY;	91.04
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	91.01
PRK09087	226	hypothetical protein; Validated	91.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	91.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	91.0
COG1493	308	HprK Serine kinase of the HPr protein, regulates c	90.99
PLN02165	334	adenylate isopentenyltransferase	90.98
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	90.98
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	90.97
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	90.96
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	90.94
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	90.94
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	90.93
COG1123	539	ATPase components of various ABC-type transport sy	90.91
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	90.91
PLN02348	395	phosphoribulokinase	90.9
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	90.9
PRK04220	301	2-phosphoglycerate kinase; Provisional	90.86
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	90.86
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	90.86
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	90.85
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	90.84
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	90.84
PRK00023	225	cmk cytidylate kinase; Provisional	90.83
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	90.82
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	90.78
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	90.78
cd03215	182	ABC_Carb_Monos_II This family represents domain II	90.78
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	90.77
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	90.77
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	90.77
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	90.75
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	90.75
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	90.74
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	90.73
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	90.73
cd03246	173	ABCC_Protease_Secretion This family represents the	90.73
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	90.71
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	90.7
PRK10646	153	ADP-binding protein; Provisional	90.69
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	90.69
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	90.68
PRK06921	266	hypothetical protein; Provisional	90.68
KOG3354|consensus	191		90.68
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	90.64
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	90.63
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	90.63
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	90.61
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	90.61
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	90.61
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	90.61
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	90.6
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	90.6
COG2884	223	FtsE Predicted ATPase involved in cell division [C	90.58
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	90.58
PF13479	213	AAA_24: AAA domain	90.57
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	90.57
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	90.56
TIGR00101	199	ureG urease accessory protein UreG. This model rep	90.56
PLN02796	347	D-glycerate 3-kinase	90.55
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	90.54
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	90.52
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	90.51
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	90.49
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	90.48
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	90.48
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	90.48
PRK01184	184	hypothetical protein; Provisional	90.46
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	90.46
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	90.46
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	90.45
PRK09435	332	membrane ATPase/protein kinase; Provisional	90.39
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	90.36
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	90.36
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	90.35
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	90.35
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	90.35
cd03216	163	ABC_Carb_Monos_I This family represents the domain	90.35
cd01128	249	rho_factor Transcription termination factor rho is	90.32
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	90.32
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	90.28
PLN02200	234	adenylate kinase family protein	90.27
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	90.27
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	90.26
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	90.25
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	90.24
PRK06835	329	DNA replication protein DnaC; Validated	90.23
PRK05428	308	HPr kinase/phosphorylase; Provisional	90.22
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	90.22
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	90.22
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	90.22
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	90.21
PRK05642	234	DNA replication initiation factor; Validated	90.2
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	90.2
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	90.19
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	90.19
COG4172	534	ABC-type uncharacterized transport system, duplica	90.18
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	90.18
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	90.17
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	90.16
TIGR00064	272	ftsY signal recognition particle-docking protein F	90.13
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	90.12
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	90.1
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	90.1
PRK13975	196	thymidylate kinase; Provisional	90.08
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	90.05
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	90.04
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	90.04
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	90.03
PRK06526	254	transposase; Provisional	90.03
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	90.03
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	90.02
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	90.01
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	90.01
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	90.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	89.99
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	89.98
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	89.98
PRK07952	244	DNA replication protein DnaC; Validated	89.96
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	89.95
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	89.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	89.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	89.95
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	89.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	89.92
COG1123	539	ATPase components of various ABC-type transport sy	89.91
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	89.91
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	89.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	89.88
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	89.87
PRK13768	253	GTPase; Provisional	89.87
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	89.85
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	89.84
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	89.83
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	89.83
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	89.83
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	89.82
COG4172	534	ABC-type uncharacterized transport system, duplica	89.81
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	89.81
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	89.8
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	89.79
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	89.78
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	89.78
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	89.77
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	89.76
PRK09984	262	phosphonate/organophosphate ester transporter subu	89.76
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	89.75
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	89.75
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	89.75
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	89.74
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	89.72
PRK05439	311	pantothenate kinase; Provisional	89.7
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	89.68
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	89.68
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	89.66
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	89.66
TIGR02237	209	recomb_radB DNA repair and recombination protein R	89.65
cd03112	158	CobW_like The function of this protein family is u	89.65
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	89.64
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	89.64
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	89.64
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	89.64
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	89.63
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	89.63
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	89.63
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	89.62
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	89.6
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	89.56
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	89.54
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	89.52
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	89.52
PRK14732	196	coaE dephospho-CoA kinase; Provisional	89.52
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	89.51
CHL00181	287	cbbX CbbX; Provisional	89.5
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	89.5
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	89.49
PLN02318	656	phosphoribulokinase/uridine kinase	89.47
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	89.44
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	89.43
COG4619	223	ABC-type uncharacterized transport system, ATPase	89.43
cd01394	218	radB RadB. The archaeal protein radB shares simila	89.36
PRK12339	197	2-phosphoglycerate kinase; Provisional	89.34
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	89.31
PRK03695	248	vitamin B12-transporter ATPase; Provisional	89.31
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	89.3
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	89.3
PRK07429	327	phosphoribulokinase; Provisional	89.3
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	89.3
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	89.28
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	89.26
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	89.26
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	89.25
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	89.24
PRK14526	211	adenylate kinase; Provisional	89.24
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	89.23
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	89.21
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	89.21
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	89.18
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	89.18
KOG0056|consensus	790		89.16
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	89.16
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	89.16
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	89.12
PRK08699	325	DNA polymerase III subunit delta'; Validated	89.08
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	89.05
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	89.01
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	89.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	89.0
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	89.0
PTZ00088	229	adenylate kinase 1; Provisional	88.99

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=8.5e-100  Score=785.17  Aligned_cols=269  Identities=52%  Similarity=0.814  Sum_probs=247.1

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|.+|||||||+.+|+|+.++++.|+++++.++||||||||+.||+.|...++||||||||||||||||++|.|||||
T Consensus        97 TYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYl  176 (1463)
T COG5022          97 TYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYL  176 (1463)
T ss_pred             EEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386         81 CSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN  157 (276)
Q Consensus        81 ~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern  157 (276)
                      +.++++.   .+.++++|+++||||||||||||++||||||||||++|.||.+|.|+||+|.+|||||||||+|+.+|||
T Consensus       177 asv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERN  256 (1463)
T COG5022         177 ASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERN  256 (1463)
T ss_pred             HHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccc
Confidence            9998754   3578899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccChhHH--------HHcc-----------------------------CCChhh---------------
Q psy17386        158 YHVFYQLVEAAQYSSSIN--------KEIM-----------------------------HYTSEE---------------  185 (276)
Q Consensus       158 fHIFYqllaG~~~~~~l~--------~~~~-----------------------------~~~~~d---------------  185 (276)
                      |||||||++|.+.  .++        ++|.                             |++.++               
T Consensus       257 YHIFYQll~G~~~--~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiG  334 (1463)
T COG5022         257 YHIFYQLLAGDPE--ELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIG  334 (1463)
T ss_pred             hhhhhhHhcCChH--HHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            9999999999442  222        2222                             222221               


Q ss_pred             -------------------------------------------------------------hhhh------hhHHHHHHH
Q psy17386        186 -------------------------------------------------------------KSHV------IWVFAWLVN  198 (276)
Q Consensus       186 -------------------------------------------------------------~rda------~~LF~wlv~  198 (276)
                                                                                   .|||      ++||+|||+
T Consensus       335 NIef~~~r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~  414 (1463)
T COG5022         335 NIEFKEDRNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVD  414 (1463)
T ss_pred             ceeeeecccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                         3555      999999999


Q ss_pred             HhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCC-----------Cchh
Q psy17386        199 HINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIK-----------PRLE  267 (276)
Q Consensus       199 ~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~-----------~~~~  267 (276)
                      +||.+|..+....+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+|||           ||+|
T Consensus       415 rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~ID  494 (1463)
T COG5022         415 RINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCID  494 (1463)
T ss_pred             HHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhH
Confidence            99999986666789999999999999999999999999999999999999999999999999965           6689


Q ss_pred             hhhh
Q psy17386        268 LTES  271 (276)
Q Consensus       268 ~~~~  271 (276)
                      |||+
T Consensus       495 LIE~  498 (1463)
T COG5022         495 LIEK  498 (1463)
T ss_pred             HHhc
Confidence            9998

>PTZ00014 myosin-A; Provisional

Probab=100.00  E-value=5.8e-97  Score=755.93  Aligned_cols=266  Identities=40%  Similarity=0.598  Sum_probs=241.5

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcC-cCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGA-KMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~-~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+|++||+||||+.+|+|+++++++|+++ ...++|||||+||+.||+.|+..++||||||||||||||||++|++|+|
T Consensus       127 Ty~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~y  206 (821)
T PTZ00014        127 TTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRY  206 (821)
T ss_pred             eeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHH
Confidence            899999999999999999999999999986 5678999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386         80 LCSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY  158 (276)
Q Consensus        80 L~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf  158 (276)
                      |+..+++. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|.|+||+|.+||||||||++|++|||||
T Consensus       207 la~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf  286 (821)
T PTZ00014        207 FASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSY  286 (821)
T ss_pred             HHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCE
Confidence            99987643 35799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccChh--HH----HHcc----------------------------CCChhh-------------------
Q psy17386        159 HVFYQLVEAAQYSSS--IN----KEIM----------------------------HYTSEE-------------------  185 (276)
Q Consensus       159 HIFYqllaG~~~~~~--l~----~~~~----------------------------~~~~~d-------------------  185 (276)
                      |||||||+|++++..  +.    +.|+                            +|+++|                   
T Consensus       287 HIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F  366 (821)
T PTZ00014        287 HIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEI  366 (821)
T ss_pred             eHHHHHHhCCCHHHHHHcCCCChHhccccCCCCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeE
Confidence            999999999975321  00    1121                            111111                   


Q ss_pred             ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386        186 ---------------------------------------------------------------KSHV------IWVFAWL  196 (276)
Q Consensus       186 ---------------------------------------------------------------~rda------~~LF~wl  196 (276)
                                                                                     +|||      ++||+||
T Consensus       367 ~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wi  446 (821)
T PTZ00014        367 EGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWI  446 (821)
T ss_pred             eccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                           3565      9999999


Q ss_pred             HHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        197 VNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       197 v~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      |++||++|.+......+||||||||||+|+.|||||||||||||||||+|+++||+.||+||++|||+|.
T Consensus       447 V~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~  516 (821)
T PTZ00014        447 IRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTE  516 (821)
T ss_pred             HHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence            9999999987766778999999999999999999999999999999999999999999999999999883

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=100.00  E-value=1.6e-95  Score=737.55  Aligned_cols=265  Identities=49%  Similarity=0.819  Sum_probs=242.5

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++...++|||||+||+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus        31 T~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yL  110 (691)
T cd01380          31 TYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYF  110 (691)
T ss_pred             EeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC-----cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCC
Q psy17386         81 CSVTSNV-----STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGE  155 (276)
Q Consensus        81 ~~~~~~~-----~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~E  155 (276)
                      +.++++.     ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++||
T Consensus       111 a~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gE  190 (691)
T cd01380         111 ASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGE  190 (691)
T ss_pred             HHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEEEEeeccccceeecCCCC
Confidence            9998653     35789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh---------------
Q psy17386        156 RNYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE---------------  185 (276)
Q Consensus       156 rnfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d---------------  185 (276)
                      ||||||||||+|+++++.  +.    +.|+                             +|++++               
T Consensus       191 rnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLG  270 (691)
T cd01380         191 RNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLG  270 (691)
T ss_pred             ChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999874321  00    1121                             222111               


Q ss_pred             --------------------------------------------------------------hhhh------hhHHHHHH
Q psy17386        186 --------------------------------------------------------------KSHV------IWVFAWLV  197 (276)
Q Consensus       186 --------------------------------------------------------------~rda------~~LF~wlv  197 (276)
                                                                                    +|||      ++||+|||
T Consensus       271 ni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV  350 (691)
T cd01380         271 NIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIV  350 (691)
T ss_pred             ceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                          4565      99999999


Q ss_pred             HHhhhccCCC---CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        198 NHINTCTNPG---QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       198 ~~iN~~l~~~---~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      ++||+++.+.   .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|
T Consensus       351 ~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~  421 (691)
T cd01380         351 DVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEW  421 (691)
T ss_pred             HHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999876   4567899999999999999999999999999999999999999999999999999998

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=100.00  E-value=1.7e-95  Score=737.52  Aligned_cols=267  Identities=52%  Similarity=0.791  Sum_probs=244.2

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|++++++.|+++...++|||||++|+.||+.|...++||||||||||||||||++|+||+||
T Consensus        36 T~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yL  115 (693)
T cd01377          36 TYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYL  115 (693)
T ss_pred             EeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC---------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccccccccc
Q psy17386         81 CSVTSNV---------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQ  151 (276)
Q Consensus        81 ~~~~~~~---------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~  151 (276)
                      +.++++.         ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|
T Consensus       116 a~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q  195 (693)
T cd01377         116 ASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQ  195 (693)
T ss_pred             HhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEEecccCceeec
Confidence            9997643         2468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHhhcccChh----HH---HHcc----------------------------CCChhh-----------
Q psy17386        152 SPGERNYHVFYQLVEAAQYSSS----IN---KEIM----------------------------HYTSEE-----------  185 (276)
Q Consensus       152 ~~~ErnfHIFYqllaG~~~~~~----l~---~~~~----------------------------~~~~~d-----------  185 (276)
                      ++||||||||||||+|++++..    |.   +.|+                            ||++++           
T Consensus       196 ~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaI  275 (693)
T cd01377         196 ASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAI  275 (693)
T ss_pred             CCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCccCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999874321    00   1111                            222211           


Q ss_pred             ------------------------------------------------------------------hhhh------hhHH
Q psy17386        186 ------------------------------------------------------------------KSHV------IWVF  193 (276)
Q Consensus       186 ------------------------------------------------------------------~rda------~~LF  193 (276)
                                                                                        +|||      ++||
T Consensus       276 LhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF  355 (693)
T cd01377         276 LHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLF  355 (693)
T ss_pred             HhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                                                              4565      9999


Q ss_pred             HHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        194 AWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       194 ~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      +|||++||++|.+..+...+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|..
T Consensus       356 ~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~  429 (693)
T cd01377         356 LWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTF  429 (693)
T ss_pred             HHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999887778899999999999999999999999999999999999999999999999999998854

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=100.00  E-value=3.9e-95  Score=732.33  Aligned_cols=264  Identities=50%  Similarity=0.843  Sum_probs=241.6

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++.++.|+++...++|||||++|+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus        31 T~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yL  110 (671)
T cd01381          31 TYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYL  110 (671)
T ss_pred             EeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386         81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV  160 (276)
Q Consensus        81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI  160 (276)
                      +.+++. .+.++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||||
T Consensus       111 a~~s~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHI  189 (671)
T cd01381         111 AAISGK-HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHI  189 (671)
T ss_pred             HHhcCC-CCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEEEEEeccCCceeecCCCCCcHHH
Confidence            998764 3568999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccChh----HH--HHcc-----------------------------CCChhh--------------------
Q psy17386        161 FYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE--------------------  185 (276)
Q Consensus       161 FYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d--------------------  185 (276)
                      |||||+|+++++.    |.  +.|+                             ||++++                    
T Consensus       190 FYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~  269 (671)
T cd01381         190 FYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFE  269 (671)
T ss_pred             HHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEe
Confidence            9999999874321    00  1121                             222111                    


Q ss_pred             -----------------------------------------------------------hhhh------hhHHHHHHHHh
Q psy17386        186 -----------------------------------------------------------KSHV------IWVFAWLVNHI  200 (276)
Q Consensus       186 -----------------------------------------------------------~rda------~~LF~wlv~~i  200 (276)
                                                                                 +|||      ++||+|||.+|
T Consensus       270 ~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~I  349 (671)
T cd01381         270 ATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKI  349 (671)
T ss_pred             eccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                       4565      99999999999


Q ss_pred             hhccCCC-CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        201 NTCTNPG-QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       201 N~~l~~~-~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      |++|.++ .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|
T Consensus       350 N~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~  415 (671)
T cd01381         350 NAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINW  415 (671)
T ss_pred             HHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999755 4567899999999999999999999999999999999999999999999999999998

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=100.00  E-value=8.3e-94  Score=722.46  Aligned_cols=265  Identities=51%  Similarity=0.789  Sum_probs=241.0

Q ss_pred             CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+|++||+||||+.+| +|+++.++.|+++...++|||||+||++||+.|+.+++||||||||||||||||++|++|+|
T Consensus        32 T~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y  111 (674)
T cd01384          32 TYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRY  111 (674)
T ss_pred             eeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHH
Confidence            89999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386         80 LCSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER  156 (276)
Q Consensus        80 L~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er  156 (276)
                      |+.+++..   ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||++|++|||
T Consensus       112 La~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gEr  191 (674)
T cd01384         112 LAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPER  191 (674)
T ss_pred             HHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEEEEEecccCceeecCCCCC
Confidence            99987643   346899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcccChh----HH--HHcc-----------------------------CCChhh----------------
Q psy17386        157 NYHVFYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE----------------  185 (276)
Q Consensus       157 nfHIFYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d----------------  185 (276)
                      |||||||||+| ++++.    |.  +.|+                             ||++++                
T Consensus       192 nfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGn  270 (674)
T cd01384         192 NYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGN  270 (674)
T ss_pred             chhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Confidence            99999999999 43210    00  1111                             111111                


Q ss_pred             ----------------------------------------------------------------hhhh------hhHHHH
Q psy17386        186 ----------------------------------------------------------------KSHV------IWVFAW  195 (276)
Q Consensus       186 ----------------------------------------------------------------~rda------~~LF~w  195 (276)
                                                                                      +|||      ++||+|
T Consensus       271 i~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~w  350 (674)
T cd01384         271 IEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDW  350 (674)
T ss_pred             eeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                            4555      999999


Q ss_pred             HHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        196 LVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       196 lv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      ||.+||+++.+......+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.
T Consensus       351 iV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~  421 (674)
T cd01384         351 LVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWS  421 (674)
T ss_pred             HHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            99999999987766778999999999999999999999999999999999999999999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=100.00  E-value=1e-93  Score=722.53  Aligned_cols=263  Identities=46%  Similarity=0.786  Sum_probs=240.4

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++.++.|+++...++|||||+||+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus        32 T~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl  111 (677)
T cd01387          32 TYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYL  111 (677)
T ss_pred             EeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386         81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV  160 (276)
Q Consensus        81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI  160 (276)
                      +.++++.+..++++|++++|||||||||||.+|+||||||||++|+|+ +|.|+||+|.+||||||||+.|++|||||||
T Consensus       112 ~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHI  190 (677)
T cd01387         112 AAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHI  190 (677)
T ss_pred             HhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEEEEEEEecCCCceeecCCCCchHHH
Confidence            999876667799999999999999999999999999999999999995 7999999999999999999999999999999


Q ss_pred             HHHHHhhcccChh--HH----HHcc-----------------------------CCChhh--------------------
Q psy17386        161 FYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE--------------------  185 (276)
Q Consensus       161 FYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d--------------------  185 (276)
                      |||||+|++++++  +.    +.|+                             +|++++                    
T Consensus       191 FYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~  270 (677)
T cd01387         191 FYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFE  270 (677)
T ss_pred             HHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEe
Confidence            9999999875321  00    1111                             121111                    


Q ss_pred             -----------------------------------------------------------hhhh------hhHHHHHHHHh
Q psy17386        186 -----------------------------------------------------------KSHV------IWVFAWLVNHI  200 (276)
Q Consensus       186 -----------------------------------------------------------~rda------~~LF~wlv~~i  200 (276)
                                                                                 +|||      ++||+|||++|
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~i  350 (677)
T cd01387         271 KRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRV  350 (677)
T ss_pred             eccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                       3565      99999999999


Q ss_pred             hhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        201 NTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       201 N~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      |++|.+. ....+||||||||||+|+.||||||||||||||||++|++++|+.||+||.+|||+|
T Consensus       351 N~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~  414 (677)
T cd01387         351 NALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDW  414 (677)
T ss_pred             HHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999874 456899999999999999999999999999999999999999999999999999987

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=100.00  E-value=7.4e-94  Score=725.06  Aligned_cols=266  Identities=47%  Similarity=0.731  Sum_probs=240.4

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCc-CCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAK-MGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~-~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+|++||+||||+.+|+|++++++.|+++. ..++|||||++|+.||+.|+.+++||||||||||||||||++|++|+|
T Consensus        38 T~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~y  117 (692)
T cd01385          38 TYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHH  117 (692)
T ss_pred             EeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHH
Confidence            8999999999999999999999999999887 789999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386         80 LCSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN  157 (276)
Q Consensus        80 L~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern  157 (276)
                      |+.+++..  ...++++|++++|||||||||||.+|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||
T Consensus       118 L~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERN  197 (692)
T cd01385         118 LTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERN  197 (692)
T ss_pred             HHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEeecccceeeecCCCCch
Confidence            99987543  3578999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccChhHH------HHcc-----------------------------CCChhh-----------------
Q psy17386        158 YHVFYQLVEAAQYSSSIN------KEIM-----------------------------HYTSEE-----------------  185 (276)
Q Consensus       158 fHIFYqllaG~~~~~~l~------~~~~-----------------------------~~~~~d-----------------  185 (276)
                      ||||||||+|+++++.-.      ..|+                             ||++++                 
T Consensus       198 fHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni  277 (692)
T cd01385         198 YHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNV  277 (692)
T ss_pred             hHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc
Confidence            999999999997532110      1111                             111111                 


Q ss_pred             ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386        186 ---------------------------------------------------------------KSHV------IWVFAWL  196 (276)
Q Consensus       186 ---------------------------------------------------------------~rda------~~LF~wl  196 (276)
                                                                                     +|||      ++||+||
T Consensus       278 ~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wi  357 (692)
T cd01385         278 TYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWI  357 (692)
T ss_pred             eeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                           4555      9999999


Q ss_pred             HHHhhhccCCCCC---CcceeeeeecccccccCC-CcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        197 VNHINTCTNPGQD---STRFLGVLDIFGFENFAV-NSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       197 v~~iN~~l~~~~~---~~~~IgiLDi~GFE~~~~-NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      |++||++|.+..+   ...+||||||||||+|+. ||||||||||||||||++|+++||+.||++|++|||+|.
T Consensus       358 V~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~  431 (692)
T cd01385         358 VLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWT  431 (692)
T ss_pred             HHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            9999999986543   457999999999999999 999999999999999999999999999999999999875

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=100.00  E-value=9.9e-94  Score=729.23  Aligned_cols=265  Identities=31%  Similarity=0.457  Sum_probs=238.7

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+++|++++++.|+++...++|||||++|+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus        31 T~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yl  110 (767)
T cd01386          31 TCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYL  110 (767)
T ss_pred             EeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCc-chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         81 CSVTSNVS-TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        81 ~~~~~~~~-~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      +.++++.. ....++|++++|||||||||||.+|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||||
T Consensus       111 a~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFH  190 (767)
T cd01386         111 ALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFV  190 (767)
T ss_pred             HhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEEEEEecccCceeecCCCCCcch
Confidence            99876432 23357899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh--HH-------------------------HHcc---------CCChhh------------------
Q psy17386        160 VFYQLVEAAQYSSS--IN-------------------------KEIM---------HYTSEE------------------  185 (276)
Q Consensus       160 IFYqllaG~~~~~~--l~-------------------------~~~~---------~~~~~d------------------  185 (276)
                      ||||||+|++.+..  +.                         +.|.         ||+++|                  
T Consensus       191 IFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~  270 (767)
T cd01386         191 VFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAG  270 (767)
T ss_pred             hHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCce
Confidence            99999999864210  00                         0111         111111                  


Q ss_pred             ----------------------------------------------------------------------hhhh------
Q psy17386        186 ----------------------------------------------------------------------KSHV------  189 (276)
Q Consensus       186 ----------------------------------------------------------------------~rda------  189 (276)
                                                                                            +|||      
T Consensus       271 f~~~~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY  350 (767)
T cd01386         271 ATKVAGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLY  350 (767)
T ss_pred             eeecCCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence                                                                                  2455      


Q ss_pred             hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCC------CcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCC
Q psy17386        190 IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAV------NSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIK  263 (276)
Q Consensus       190 ~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~------NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~  263 (276)
                      +|||+|||.+||++|.+......+||||||||||+|+.      |||||||||||||||||+|+++||+.||+||++|||
T Consensus       351 ~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI  430 (767)
T cd01386         351 SELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGV  430 (767)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            89999999999999988766678999999999999984      899999999999999999999999999999999999


Q ss_pred             Cc
Q psy17386        264 PR  265 (276)
Q Consensus       264 ~~  265 (276)
                      +|
T Consensus       431 ~~  432 (767)
T cd01386         431 EV  432 (767)
T ss_pred             Cc
Confidence            99

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=100.00  E-value=1.6e-93  Score=721.24  Aligned_cols=266  Identities=44%  Similarity=0.704  Sum_probs=242.1

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|++++++.|+++...++|||||++|+.||+.|+.+++||||||||||||||||++|++++||
T Consensus        31 T~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL  110 (674)
T cd01378          31 TYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYI  110 (674)
T ss_pred             eccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386         81 CSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY  158 (276)
Q Consensus        81 ~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf  158 (276)
                      +.++++.  ...++++|++++|||||||||||.+|+||||||||++|+|+.+|.++||+|.+||||||||+.|++|||||
T Consensus       111 ~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnf  190 (674)
T cd01378         111 AAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNF  190 (674)
T ss_pred             HhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEEEEeecCCCceeecCCCCchh
Confidence            9998754  34688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccChhHH------HHcc-----------------------------CCChhh------------------
Q psy17386        159 HVFYQLVEAAQYSSSIN------KEIM-----------------------------HYTSEE------------------  185 (276)
Q Consensus       159 HIFYqllaG~~~~~~l~------~~~~-----------------------------~~~~~d------------------  185 (276)
                      |||||||+|+++++.-.      +.|.                             +|+++|                  
T Consensus       191 HIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~  270 (674)
T cd01378         191 HIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQ  270 (674)
T ss_pred             HHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceE
Confidence            99999999987432100      1111                             122111                  


Q ss_pred             --------------------------------------------------------------hhhh------hhHHHHHH
Q psy17386        186 --------------------------------------------------------------KSHV------IWVFAWLV  197 (276)
Q Consensus       186 --------------------------------------------------------------~rda------~~LF~wlv  197 (276)
                                                                                    .|||      ++||+|||
T Consensus       271 f~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV  350 (674)
T cd01378         271 FAENGDGAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLV  350 (674)
T ss_pred             EeccCCCccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                          2455      89999999


Q ss_pred             HHhhhccCCC-CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        198 NHINTCTNPG-QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       198 ~~iN~~l~~~-~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      .+||++|.+. .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.
T Consensus       351 ~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~  420 (674)
T cd01378         351 SRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWT  420 (674)
T ss_pred             HHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            9999999875 45678999999999999999999999999999999999999999999999999999983

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=100.00  E-value=1.9e-93  Score=720.09  Aligned_cols=261  Identities=46%  Similarity=0.754  Sum_probs=236.9

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++.++.|+++.  ..|||||++|++||+.|+.+++||||||||||||||||++|++|+||
T Consensus        39 T~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yL  116 (677)
T cd01383          39 TKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYL  116 (677)
T ss_pred             EEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHH
Confidence            8999999999999999999999999999765  46999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386         81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV  160 (276)
Q Consensus        81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI  160 (276)
                      +.++++  +.++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||||
T Consensus       117 a~~~~~--~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHI  194 (677)
T cd01383         117 ASLGGG--SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHI  194 (677)
T ss_pred             HhhCCC--CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHH
Confidence            998764  378999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccChh--H--H--HHcc-----------------------------CCChhh--------------------
Q psy17386        161 FYQLVEAAQYSSS--I--N--KEIM-----------------------------HYTSEE--------------------  185 (276)
Q Consensus       161 FYqllaG~~~~~~--l--~--~~~~-----------------------------~~~~~d--------------------  185 (276)
                      |||||+|++++..  +  .  +.|+                             ||+++|                    
T Consensus       195 FYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~  274 (677)
T cd01383         195 FYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFT  274 (677)
T ss_pred             HHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEE
Confidence            9999999875321  0  0  1121                             222211                    


Q ss_pred             ---------------------------------------------------------hhhh------hhHHHHHHHHhhh
Q psy17386        186 ---------------------------------------------------------KSHV------IWVFAWLVNHINT  202 (276)
Q Consensus       186 ---------------------------------------------------------~rda------~~LF~wlv~~iN~  202 (276)
                                                                               +|||      ++||+|||++||+
T Consensus       275 ~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~  354 (677)
T cd01383         275 VIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINK  354 (677)
T ss_pred             ecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                     4565      9999999999999


Q ss_pred             ccCCCCC-CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        203 CTNPGQD-STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       203 ~l~~~~~-~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      +|.++.. ...+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|
T Consensus       355 ~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~  418 (677)
T cd01383         355 SLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDW  418 (677)
T ss_pred             HhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9986543 46799999999999999999999999999999999999999999999999999988

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=100.00  E-value=2.4e-93  Score=717.03  Aligned_cols=265  Identities=42%  Similarity=0.710  Sum_probs=242.1

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+++|++++++.|+++.+.++|||||++|+.||+.|...+++|||||||||||||||++|++++||
T Consensus        31 T~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL  110 (653)
T cd01379          31 TYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQL  110 (653)
T ss_pred             EeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386         81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV  160 (276)
Q Consensus        81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI  160 (276)
                      +.++++....++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||++|++|||||||
T Consensus       111 ~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHI  190 (653)
T cd01379         111 TVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHI  190 (653)
T ss_pred             HHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEEEEEeccCCceeccCCCCCceee
Confidence            99876656789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccChhHH-------------------------------HHcc---------CCChhh---------------
Q psy17386        161 FYQLVEAAQYSSSIN-------------------------------KEIM---------HYTSEE---------------  185 (276)
Q Consensus       161 FYqllaG~~~~~~l~-------------------------------~~~~---------~~~~~d---------------  185 (276)
                      |||||+|+++++.++                               +.|.         +|++++               
T Consensus       191 FYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLG  270 (653)
T cd01379         191 FYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLG  270 (653)
T ss_pred             HHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Confidence            999999987543221                               0111         122111               


Q ss_pred             -----------------------------------------------------------------hhhh------hhHHH
Q psy17386        186 -----------------------------------------------------------------KSHV------IWVFA  194 (276)
Q Consensus       186 -----------------------------------------------------------------~rda------~~LF~  194 (276)
                                                                                       +|||      ++||+
T Consensus       271 Ni~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~  350 (653)
T cd01379         271 DIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFS  350 (653)
T ss_pred             ceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                             4565      99999


Q ss_pred             HHHHHhhhccCCCCC-----CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        195 WLVNHINTCTNPGQD-----STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       195 wlv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      |||++||++|.+...     ...+||||||||||+|+.||||||||||||||||++|+++||+.||++|++|||+|
T Consensus       351 wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~  426 (653)
T cd01379         351 WIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDA  426 (653)
T ss_pred             HHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            999999999976532     35799999999999999999999999999999999999999999999999999999

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd00124 MYSc Myosin motor domain

Probab=100.00  E-value=9.1e-92  Score=710.75  Aligned_cols=266  Identities=50%  Similarity=0.808  Sum_probs=244.3

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++.+++|+++...++|||||++|++||+.|+.+++||||||||||||||||++|++|+||
T Consensus        31 T~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl  110 (679)
T cd00124          31 TYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYL  110 (679)
T ss_pred             EeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386         81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV  160 (276)
Q Consensus        81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI  160 (276)
                      +.++++....++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||||
T Consensus       111 ~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHI  190 (679)
T cd00124         111 ASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHI  190 (679)
T ss_pred             HhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEEEEEEcccceeeccCCCCCchhH
Confidence            99987666779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccChh----HH--HHcc-----------------------------CCChhh--------------------
Q psy17386        161 FYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE--------------------  185 (276)
Q Consensus       161 FYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d--------------------  185 (276)
                      |||||+|+++++.    |.  +.|+                             ||++++                    
T Consensus       191 FYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~  270 (679)
T cd00124         191 FYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFK  270 (679)
T ss_pred             HHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEE
Confidence            9999999864211    00  1111                             121111                    


Q ss_pred             -----------------------------------------------------------hhhh------hhHHHHHHHHh
Q psy17386        186 -----------------------------------------------------------KSHV------IWVFAWLVNHI  200 (276)
Q Consensus       186 -----------------------------------------------------------~rda------~~LF~wlv~~i  200 (276)
                                                                                 .|||      ++||+|||++|
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~i  350 (679)
T cd00124         271 SVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRI  350 (679)
T ss_pred             ecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                       3555      99999999999


Q ss_pred             hhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        201 NTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       201 N~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      |.+|.++.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.
T Consensus       351 N~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~  416 (679)
T cd00124         351 NSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWE  416 (679)
T ss_pred             HHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999988767789999999999999999999999999999999999999999999999999999984

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>smart00242 MYSc Myosin

Probab=100.00  E-value=1.7e-91  Score=708.06  Aligned_cols=267  Identities=54%  Similarity=0.816  Sum_probs=244.2

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++...++|||||++|++||+.|+.+++||||||||||||||||++|++++||
T Consensus        37 T~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl  116 (677)
T smart00242       37 TYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYL  116 (677)
T ss_pred             ccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386         81 CSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY  158 (276)
Q Consensus        81 ~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf  158 (276)
                      +.++++.  ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||
T Consensus       117 ~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnf  196 (677)
T smart00242      117 AAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNY  196 (677)
T ss_pred             HhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEEEEeecCCceEEecCCCCCch
Confidence            9998764  56799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccChh----HH--HHcc-----------------------------CCChhh------------------
Q psy17386        159 HVFYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE------------------  185 (276)
Q Consensus       159 HIFYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d------------------  185 (276)
                      |||||||+|+++++.    |.  +.|+                             ||++++                  
T Consensus       197 HIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~  276 (677)
T smart00242      197 HIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIE  276 (677)
T ss_pred             HHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccee
Confidence            999999999874211    00  1111                             121111                  


Q ss_pred             ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386        186 ------------------------------------------------------------KSHV------IWVFAWLVNH  199 (276)
Q Consensus       186 ------------------------------------------------------------~rda------~~LF~wlv~~  199 (276)
                                                                                  .|||      ++||+|||++
T Consensus       277 F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~  356 (677)
T smart00242      277 FEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKR  356 (677)
T ss_pred             EEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                        3455      9999999999


Q ss_pred             hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      ||++|.++.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.+
T Consensus       357 iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~  424 (677)
T smart00242      357 INKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTF  424 (677)
T ss_pred             HHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999887678899999999999999999999999999999999999999999999999999999854

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=100.00  E-value=3.6e-91  Score=707.82  Aligned_cols=264  Identities=45%  Similarity=0.757  Sum_probs=238.6

Q ss_pred             CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+|++||+||||+.+| +|+++.++.|+++...++|||||++|++||+.|+.+++||||||||||||||||++|++|+|
T Consensus        35 T~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~y  114 (717)
T cd01382          35 TYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRY  114 (717)
T ss_pred             EeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHH
Confidence            89999999999999998 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      |+...++ ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++||||||
T Consensus       115 La~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfH  193 (717)
T cd01382         115 LTESYGS-GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYH  193 (717)
T ss_pred             HHhhccC-CccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEEEEEeccCCceEecCCCCCchH
Confidence            9987654 367899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh----H------------------------------------------------HHHcc--------
Q psy17386        160 VFYQLVEAAQYSSS----I------------------------------------------------NKEIM--------  179 (276)
Q Consensus       160 IFYqllaG~~~~~~----l------------------------------------------------~~~~~--------  179 (276)
                      ||||||+|++++..    |                                                .+.|.        
T Consensus       194 IFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~  273 (717)
T cd01382         194 IFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKK  273 (717)
T ss_pred             HHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence            99999999863210    0                                                00111        


Q ss_pred             -CCChhh-------------------------------------------------------------------------
Q psy17386        180 -HYTSEE-------------------------------------------------------------------------  185 (276)
Q Consensus       180 -~~~~~d-------------------------------------------------------------------------  185 (276)
                       +|++++                                                                         
T Consensus       274 lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~  353 (717)
T cd01382         274 IGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV  353 (717)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCce
Confidence             111100                                                                         


Q ss_pred             ------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHH
Q psy17386        186 ------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFN  247 (276)
Q Consensus       186 ------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~  247 (276)
                                  .|||      ++||+|||++||+++.+. ....+||||||||||+|+.||||||||||||||||++|+
T Consensus       354 i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~  432 (717)
T cd01382         354 IKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFN  432 (717)
T ss_pred             EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHH
Confidence                        3454      899999999999999654 456899999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHhhhCCCch
Q psy17386        248 HYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       248 ~~~f~~eq~eY~~E~~~~~  266 (276)
                      ++||..||++|++|||+|.
T Consensus       433 ~~if~~Eq~~Y~~EgI~~~  451 (717)
T cd01382         433 ERILKEEQELYQREGLGVN  451 (717)
T ss_pred             HHHHHHHHHHHHhcCCCCc
Confidence            9999999999999999884

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>KOG0164|consensus

Probab=100.00  E-value=7.1e-92  Score=684.82  Aligned_cols=266  Identities=45%  Similarity=0.747  Sum_probs=243.3

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.++||+++++++|+|...-+.|||+||+|+.||+.|.+..+||||+|||||||||||++|+||+|+
T Consensus        39 TyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYi  118 (1001)
T KOG0164|consen   39 TYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYI  118 (1001)
T ss_pred             EEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386         81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER  156 (276)
Q Consensus        81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er  156 (276)
                      |.+.+.+.    ..+..+++++++||||||||||.+|+|||||||||.++||-+|..+|+.|..||||||||+.|.+|||
T Consensus       119 AAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GER  198 (1001)
T KOG0164|consen  119 AAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGHITNYLLEKSRVVKQQPGER  198 (1001)
T ss_pred             HHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccchHhHHHHhhhhhhhcCcCcc
Confidence            99987542    35667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcccChhHH--------HHcc----------------------------CCChhh---------------
Q psy17386        157 NYHVFYQLVEAAQYSSSIN--------KEIM----------------------------HYTSEE---------------  185 (276)
Q Consensus       157 nfHIFYqllaG~~~~~~l~--------~~~~----------------------------~~~~~d---------------  185 (276)
                      |||||||||.|+++. .|+        ..|.                            +|+++|               
T Consensus       199 NFH~FYQLL~G~~e~-~Lr~l~Ler~~~~Y~ylnqg~~~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLG  277 (1001)
T KOG0164|consen  199 NFHIFYQLLRGGEEQ-LLRQLGLERNPQSYNYLNQGSAKVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLG  277 (1001)
T ss_pred             hHHHHHHHHcCCcHH-HHHHhccccCcchhhhhhhhhhhhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999853 222        1121                            555554               


Q ss_pred             ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386        186 ------------------------------------------------------------KSHV------IWVFAWLVNH  199 (276)
Q Consensus       186 ------------------------------------------------------------~rda------~~LF~wlv~~  199 (276)
                                                                                  +|||      +|||.|||.+
T Consensus       278 Nv~f~~~ed~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~r  357 (1001)
T KOG0164|consen  278 NVEFADNEDSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNR  357 (1001)
T ss_pred             ceEEeecCcccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                                                        4676      9999999999


Q ss_pred             hhhccCCC-----CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        200 INTCTNPG-----QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       200 iN~~l~~~-----~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      ||+.+...     .....-||+|||||||+|+.|||||||||||||||||.|++-+++.|||||++|||||-.
T Consensus       358 In~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~  430 (1001)
T KOG0164|consen  358 INRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTH  430 (1001)
T ss_pred             hhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCcee
Confidence            99998543     223578999999999999999999999999999999999999999999999999999964

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=8.4e-90  Score=698.35  Aligned_cols=268  Identities=49%  Similarity=0.818  Sum_probs=227.0

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+++|+|+++.+++|+++...++|||||++|++||+.|+.+++|||||++|||||||||++|++++||
T Consensus        30 T~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L  109 (689)
T PF00063_consen   30 TYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYL  109 (689)
T ss_dssp             EEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeeccccccccccchHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386         81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER  156 (276)
Q Consensus        81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er  156 (276)
                      +.++.+..    ..+.++|+++++||||||||||.+|+||||||||++|+|+.+|.++||+|.+||||||||+.+++|||
T Consensus       110 ~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i~~ylLEksRv~~~~~~Er  189 (689)
T PF00063_consen  110 ASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKIETYLLEKSRVVRQPPGER  189 (689)
T ss_dssp             HHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEEEE-GGGGT---TTS-
T ss_pred             hhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccceecccccccceeecccccc
Confidence            99987653    57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh----------------
Q psy17386        157 NYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE----------------  185 (276)
Q Consensus       157 nfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d----------------  185 (276)
                      |||||||||+|+++++.  +.    +.|+                             +|++++                
T Consensus       190 nfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGn  269 (689)
T PF00063_consen  190 NFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGN  269 (689)
T ss_dssp             SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhcc
Confidence            99999999999986431  00    1111                             222111                


Q ss_pred             -------------------------------------------------------------hhhh------hhHHHHHHH
Q psy17386        186 -------------------------------------------------------------KSHV------IWVFAWLVN  198 (276)
Q Consensus       186 -------------------------------------------------------------~rda------~~LF~wlv~  198 (276)
                                                                                   +|||      ++||+|||+
T Consensus       270 i~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~  349 (689)
T PF00063_consen  270 IEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVE  349 (689)
T ss_dssp             SSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHH
Confidence                                                                         4565      999999999


Q ss_pred             HhhhccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchhh
Q psy17386        199 HINTCTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLEL  268 (276)
Q Consensus       199 ~iN~~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~~  268 (276)
                      +||.+|++.. ....+||||||||||+|..||||||||||||||||++|++++|..||++|++|||+|.++
T Consensus       350 ~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i  420 (689)
T PF00063_consen  350 RINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFI  420 (689)
T ss_dssp             HHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS
T ss_pred             hhhhccccccccccccCcccCccccccccccccccceeeeccccccceeeeeccccccccccccccccccc
Confidence            9999998765 577899999999999999999999999999999999999999999999999999999764

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0161|consensus

Probab=100.00  E-value=4.7e-89  Score=730.63  Aligned_cols=270  Identities=53%  Similarity=0.810  Sum_probs=247.7

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|.+||+||||+++|||+++++++|+|+++.++||||||||+.||+.|+..++||||+|+||||||||++||.||+||
T Consensus       113 TYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyl  192 (1930)
T KOG0161|consen  113 TYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYL  192 (1930)
T ss_pred             HcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC----c--chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCC
Q psy17386         81 CSVTSNV----S--TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPG  154 (276)
Q Consensus        81 ~~~~~~~----~--~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~  154 (276)
                      +.++++.    .  ..++++|++++|||||||||+|++|+|||||||||+|+|+.+|.|+||.|.+||||||||++|+++
T Consensus       193 a~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~  272 (1930)
T KOG0161|consen  193 ASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPG  272 (1930)
T ss_pred             HHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcc
Confidence            9998742    1  468899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHhhcccChhHH---------HHcc----------------------------CCChhh------------
Q psy17386        155 ERNYHVFYQLVEAAQYSSSIN---------KEIM----------------------------HYTSEE------------  185 (276)
Q Consensus       155 ErnfHIFYqllaG~~~~~~l~---------~~~~----------------------------~~~~~d------------  185 (276)
                      ||||||||||++|.++  .++         ..|.                            ||++++            
T Consensus       273 Er~yhiFyqlls~~~~--~l~~~l~L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sail  350 (1930)
T KOG0161|consen  273 ERNYHIFYQLLSGADP--ELKEELLLSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAIL  350 (1930)
T ss_pred             hhHHHHHHHHHhCCCH--HHHHHHhhcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            9999999999999964  222         1222                            333332            


Q ss_pred             -----------------------------------------------------------------hhhh------hhHHH
Q psy17386        186 -----------------------------------------------------------------KSHV------IWVFA  194 (276)
Q Consensus       186 -----------------------------------------------------------------~rda------~~LF~  194 (276)
                                                                                       +..|      +|||.
T Consensus       351 hlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~  430 (1930)
T KOG0161|consen  351 HLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFG  430 (1930)
T ss_pred             HhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                             0011      99999


Q ss_pred             HHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc---------
Q psy17386        195 WLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR---------  265 (276)
Q Consensus       195 wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~---------  265 (276)
                      |||.+||++|+...+..+|||||||+|||+|+.||||||||||+|||||||||+|||.+||++|.+|||+|         
T Consensus       431 wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dl  510 (1930)
T KOG0161|consen  431 WLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDL  510 (1930)
T ss_pred             HHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccch
Confidence            99999999998777889999999999999999999999999999999999999999999999999998865         


Q ss_pred             ---hhhhhhh
Q psy17386        266 ---LELTESF  272 (276)
Q Consensus       266 ---~~~~~~~  272 (276)
                         +||||+.
T Consensus       511 q~~idLIEkp  520 (1930)
T KOG0161|consen  511 QPTIDLIEKP  520 (1930)
T ss_pred             hhhHHHHhch
Confidence               7888874

>KOG0162|consensus

Probab=100.00  E-value=1.5e-87  Score=655.10  Aligned_cols=265  Identities=40%  Similarity=0.664  Sum_probs=241.4

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|++..+..|+|+..-+.||||||+|+.+|++|....+|||||||||||||||+++|.||+|+
T Consensus        49 TYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YI  128 (1106)
T KOG0162|consen   49 TYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYI  128 (1106)
T ss_pred             EEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEEecCCCCCchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386         81 CSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY  158 (276)
Q Consensus        81 ~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf  158 (276)
                      +.+++++  -..+.+-|+++||+|||||||||++|+||||||||++++|+..|.-+|++|..|||||+|||.|.++||||
T Consensus       129 s~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnF  208 (1106)
T KOG0162|consen  129 SRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNF  208 (1106)
T ss_pred             HHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchhhHHHHhhhhhhhccCCccce
Confidence            9998654  24567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccChhHHHHc----------------------------c---------CCChhh----------------
Q psy17386        159 HVFYQLVEAAQYSSSINKEI----------------------------M---------HYTSEE----------------  185 (276)
Q Consensus       159 HIFYqllaG~~~~~~l~~~~----------------------------~---------~~~~~d----------------  185 (276)
                      ||||||+.|++.+  .+..|                            .         |+.++|                
T Consensus       209 HIfYQ~~kgAs~~--~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGN  286 (1106)
T KOG0162|consen  209 HIFYQLTKGASQE--YRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGN  286 (1106)
T ss_pred             eeehhhhcCccHH--HHhhhCcCCchheeeeccccceeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccc
Confidence            9999999999853  22111                            1         111111                


Q ss_pred             ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386        186 ---------------------------------------------------------------KSHV------IWVFAWL  196 (276)
Q Consensus       186 ---------------------------------------------------------------~rda------~~LF~wl  196 (276)
                                                                                     .|||      .+||+||
T Consensus       287 IsF~Ee~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~l  366 (1106)
T KOG0162|consen  287 ISFIEEGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWL  366 (1106)
T ss_pred             eeEEeeCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                           4676      9999999


Q ss_pred             HHHhhhccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        197 VNHINTCTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       197 v~~iN~~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      |++||+++.... ....+||||||||||+|+.||||||||||+||||||.|++-+++.|||||.+|||.|-+
T Consensus       367 V~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTp  438 (1106)
T KOG0162|consen  367 VERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTP  438 (1106)
T ss_pred             HHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccc
Confidence            999999997332 25689999999999999999999999999999999999999999999999999999964

>KOG0163|consensus

Probab=100.00  E-value=1.7e-87  Score=655.84  Aligned_cols=269  Identities=50%  Similarity=0.810  Sum_probs=244.5

Q ss_pred             CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+.+|||+||||..++ +|++++++.|+|+..+.+||||||||+.|||.|..-+.+||||+||||||||||++|.+++|
T Consensus        88 tYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrY  167 (1259)
T KOG0163|consen   88 TYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRY  167 (1259)
T ss_pred             hhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHH
Confidence            89999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      ||..-++ ...++++|+++||||||||||||.+|+||||||||+++||+.+|.++|+-+.+||||||||+.|+.+|||||
T Consensus       168 Lces~gs-ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYH  246 (1259)
T KOG0163|consen  168 LCESWGS-AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYH  246 (1259)
T ss_pred             HHhccCC-CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchh
Confidence            9986554 567999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh--HH----HHcc------------------------------------------------------
Q psy17386        160 VFYQLVEAAQYSSS--IN----KEIM------------------------------------------------------  179 (276)
Q Consensus       160 IFYqllaG~~~~~~--l~----~~~~------------------------------------------------------  179 (276)
                      |||||+||++++-.  |.    +.|+                                                      
T Consensus       247 iFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~  326 (1259)
T KOG0163|consen  247 IFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKL  326 (1259)
T ss_pred             HHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHh
Confidence            99999999986421  10    1111                                                      


Q ss_pred             -CCChhh-------------------------------------------------------------------------
Q psy17386        180 -HYTSEE-------------------------------------------------------------------------  185 (276)
Q Consensus       180 -~~~~~d-------------------------------------------------------------------------  185 (276)
                       |++++|                                                                         
T Consensus       327 ~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGT  406 (1259)
T KOG0163|consen  327 LGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGT  406 (1259)
T ss_pred             cCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccce
Confidence             222221                                                                         


Q ss_pred             -------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHH
Q psy17386        186 -------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFF  246 (276)
Q Consensus       186 -------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f  246 (276)
                                   +|||      ++||+|||.+||+++ |-..+..+||||||.|||.|.+||||||||||||||||+||
T Consensus       407 vIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsi-PFe~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FF  485 (1259)
T KOG0163|consen  407 VIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSI-PFEKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFF  485 (1259)
T ss_pred             EEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccc-ccccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHH
Confidence                         4676      999999999999999 44557899999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHhhhCC-----------Cchhhhhh
Q psy17386        247 NHYVFALEQEIVSISIK-----------PRLELTES  271 (276)
Q Consensus       247 ~~~~f~~eq~eY~~E~~-----------~~~~~~~~  271 (276)
                      |+.|++.|||.|++||+           .|+||||.
T Consensus       486 NerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~  521 (1259)
T KOG0163|consen  486 NERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEA  521 (1259)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHH
Confidence            99999999999999965           46667764

>KOG0160|consensus

Probab=100.00  E-value=6e-76  Score=594.30  Aligned_cols=264  Identities=48%  Similarity=0.806  Sum_probs=236.9

Q ss_pred             CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||.|.+||+||||+.+| +|+++.+..|+ ....++.||+|++|+.||+.|.....+|+||+|||||||||+++|.+|+|
T Consensus        39 ty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~y  117 (862)
T KOG0160|consen   39 TYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEY  117 (862)
T ss_pred             hhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHH
Confidence            89999999999999999 99999999999 88889999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386         80 LCSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY  158 (276)
Q Consensus        80 L~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf  158 (276)
                      |+.++++. ...+++++++++||+||||||||.+|+||||||||++++|+.+|+|.||++.|||||||||+.++++||||
T Consensus       118 la~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~erny  197 (862)
T KOG0160|consen  118 LASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNY  197 (862)
T ss_pred             HHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhcccccceeeeEEeecceeeecCccccch
Confidence            99998763 45789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCh-hHH----H--------------------Hcc---------CCChh--------------------
Q psy17386        159 HVFYQLVEAAQYSS-SIN----K--------------------EIM---------HYTSE--------------------  184 (276)
Q Consensus       159 HIFYqllaG~~~~~-~l~----~--------------------~~~---------~~~~~--------------------  184 (276)
                      |||||+|+|...+. +++    .                    .|.         +.+.+                    
T Consensus       198 hiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f  277 (862)
T KOG0160|consen  198 HIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQF  277 (862)
T ss_pred             HHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEe
Confidence            99999999976210 000    0                    000         00000                    


Q ss_pred             -------------h-------------------------------------------hhhh------hhHHHHHHHHhhh
Q psy17386        185 -------------E-------------------------------------------KSHV------IWVFAWLVNHINT  202 (276)
Q Consensus       185 -------------d-------------------------------------------~rda------~~LF~wlv~~iN~  202 (276)
                                   |                                           .||+      ++||+|+|++||.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~  357 (862)
T KOG0160|consen  278 SSGVEETSSSPVDDHLWTAAELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKING  357 (862)
T ss_pred             ecccccccccccchHHHHHHHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence                         0                                           3454      9999999999999


Q ss_pred             ccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        203 CTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       203 ~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      .|.... ....+||||||||||.|+.||||||||||+||||||.|++|+|+.||+||.+|+++|
T Consensus       358 sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~W  421 (862)
T KOG0160|consen  358 SLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDW  421 (862)
T ss_pred             ccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            997533 347899999999999999999999999999999999999999999999999997766

>KOG4229|consensus

Probab=100.00  E-value=2.1e-66  Score=535.45  Aligned_cols=268  Identities=45%  Similarity=0.716  Sum_probs=243.8

Q ss_pred             CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||.|.+|++||||+.++ +|.+..++.|.++++++.|||||++|+.||+.|+....+|||+++||||||||+++++++++
T Consensus        92 ~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~  171 (1062)
T KOG4229|consen   92 EYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQF  171 (1062)
T ss_pred             eeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHH
Confidence            79999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      |+.++.+...+.+.+|+.++++||+||||+|.+|+||||||||+++.|..+|.+.||++..|||||+||+.|..+|||||
T Consensus       172 Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyh  251 (1062)
T KOG4229|consen  172 LSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYH  251 (1062)
T ss_pred             HHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccc
Confidence            99999555678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChhHH------HHcc------------------------------CCChhh------------------
Q psy17386        160 VFYQLVEAAQYSSSIN------KEIM------------------------------HYTSEE------------------  185 (276)
Q Consensus       160 IFYqllaG~~~~~~l~------~~~~------------------------------~~~~~d------------------  185 (276)
                      |||++++|+..++...      +.|.                              +|+.++                  
T Consensus       252 ify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~  331 (1062)
T KOG4229|consen  252 IFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNIS  331 (1062)
T ss_pred             cchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeeccee
Confidence            9999999998743211      1111                              110000                  


Q ss_pred             -------------------------------------------------------------hhhh------hhHHHHHHH
Q psy17386        186 -------------------------------------------------------------KSHV------IWVFAWLVN  198 (276)
Q Consensus       186 -------------------------------------------------------------~rda------~~LF~wlv~  198 (276)
                                                                                   .|||      .+||.|||.
T Consensus       332 ~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~  411 (1062)
T KOG4229|consen  332 YIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVL  411 (1062)
T ss_pred             HHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHh
Confidence                                                                         3454      999999999


Q ss_pred             HhhhccCCCCC--CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchhh
Q psy17386        199 HINTCTNPGQD--STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLEL  268 (276)
Q Consensus       199 ~iN~~l~~~~~--~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~~  268 (276)
                      +||..+.+..+  ...+||||||||||+|..|||||+|||||||+||+||++|+|..||+||..|+|+|-++
T Consensus       412 rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i  483 (1062)
T KOG4229|consen  412 RINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNI  483 (1062)
T ss_pred             hHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeee
Confidence            99999977654  36899999999999999999999999999999999999999999999999999999765

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=98.84  E-value=5.8e-09  Score=90.30  Aligned_cols=87  Identities=22%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHhHHHHHHhc-CCccccCCCCC
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFG-NAKTVRNDNSS  117 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~~~~i~~a~~ILeaFG-nAkT~~N~nSS  117 (276)
                      ||..+..++..++. +.|++|+..|++|||||+++.--.    ... +--....+.+.+.....+++. ++.|..|.+||
T Consensus         8 vf~~~~~~v~~~~~-G~n~~i~~yG~tGsGKT~Tm~G~~----~~~-Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SS   81 (186)
T cd01363           8 VFRDVGPLLQSALD-GYNVCIFAYGQTGSGKTYTMEGKR----EGA-GIIPRTVTDVIDLMDKGNANRTTAATAMNEHSS   81 (186)
T ss_pred             HHHHHHHHHHHHhC-CcceeEEEECCCCCcceEecCCCC----CCC-CcchHHHHHHHHHHhhccccccccccCCCCccC
Confidence            88888888888885 589999999999999998753110    000 000111222556666777888 89999999999


Q ss_pred             cccccEEEEecCCC
Q psy17386        118 RFGKFMQVCFDPKW  131 (276)
Q Consensus       118 Rfgk~~~l~f~~~g  131 (276)
                      |+..+++|++....
T Consensus        82 RsH~i~~i~v~~~~   95 (186)
T cd01363          82 RSHSVFRIHFGGKN   95 (186)
T ss_pred             cccEEEEEEEEEee
Confidence            99999999987543

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>KOG0925|consensus

Probab=96.63  E-value=0.0019  Score=63.66  Aligned_cols=64  Identities=31%  Similarity=0.375  Sum_probs=45.6

Q ss_pred             EEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH-HHHHHH
Q psy17386          8 VAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT-KFILQY   79 (276)
Q Consensus         8 iavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~-k~il~y   79 (276)
                      .++|||...| |++...+.++  .+.++|-+-+     -+.-|..-.++|+||+.||.|||||+-. +.++.|
T Consensus        22 k~~Npf~~~p-~s~rY~~ilk--~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~   86 (699)
T KOG0925|consen   22 KAINPFNGKP-YSQRYYDILK--KRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEY   86 (699)
T ss_pred             hhcCCCCCCc-CcHHHHHHHH--HHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHH
Confidence            3499999998 7777666665  3446775543     2344555678999999999999999864 344444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.60  E-value=0.0019  Score=50.91  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|+|+|.||||||+.++.+.+.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999875

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.24  E-value=0.0079  Score=47.20  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .......+++.|++|+|||..++.+.+.+.
T Consensus        15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          15 ELPPPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            344567899999999999999999999875

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.18  E-value=0.0042  Score=49.32  Aligned_cols=29  Identities=34%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++..+++++|++|+|||..++.+++-+..
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            35678999999999999999999998764

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.13  E-value=0.0047  Score=48.55  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+|+|.+|||||+.++.+.+.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999996

...

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.01  E-value=0.0058  Score=51.18  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             HhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         51 QNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ......+.+++.|++|+|||...+.+++.+..-
T Consensus        19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            355677899999999999999999999998875

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.79  E-value=0.008  Score=46.52  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=24.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+.+++.|.+|+|||+.++.+...+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4789999999999999999998887764

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.78  E-value=0.0085  Score=47.23  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=21.6

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |++.|.+|+|||+.++.+.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            78999999999999999999974

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.75  E-value=0.0091  Score=50.55  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.|+|+|.||||||+.++.+...+.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999998877753

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.69  E-value=0.012  Score=42.67  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |.++|.+|||||+.++.+.+.|
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.48  E-value=0.029  Score=48.94  Aligned_cols=40  Identities=23%  Similarity=0.124  Sum_probs=31.2

Q ss_pred             HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +-.+.+.+........|++.|++|+|||..++.+.+++..
T Consensus        25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~   64 (226)
T TIGR03420        25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE   64 (226)
T ss_pred             HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3344455544566789999999999999999999988764

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.43  E-value=0.016  Score=50.50  Aligned_cols=27  Identities=33%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+...|.|+|.||||||+.++.+.+.|
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            356689999999999999999999987

>PRK06762 hypothetical protein; Provisional

Probab=95.40  E-value=0.017  Score=48.32  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|+++|.+|||||+.++.+.+.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999999987

>PRK07261 topology modulation protein; Provisional

Probab=95.38  E-value=0.015  Score=49.58  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +-|+|.|.||||||+.++.+.+.+
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHh
Confidence            358999999999999999987764

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.36  E-value=0.015  Score=50.26  Aligned_cols=27  Identities=37%  Similarity=0.368  Sum_probs=24.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.|++.|.||||||+.++.+.+.+-
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            457899999999999999999998863

>PRK06696 uridine kinase; Validated

Probab=95.34  E-value=0.028  Score=49.71  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+.--|.|+|.||||||+.++.+.+.|..
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            446678999999999999999999999853

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.31  E-value=0.017  Score=48.84  Aligned_cols=29  Identities=28%  Similarity=0.279  Sum_probs=25.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+...|++.|.+|||||+.++.+.+.|..
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35568999999999999999999999864

>PRK08118 topology modulation protein; Reviewed

Probab=95.31  E-value=0.016  Score=49.18  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +-|+|.|.+|||||+.++.+-+.+-
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999988753

>PRK08233 hypothetical protein; Provisional

Probab=95.23  E-value=0.014  Score=48.97  Aligned_cols=25  Identities=32%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-|.|+|.+|||||+.++.+.+.|.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5688999999999999999999885

>PRK00131 aroK shikimate kinase; Reviewed

Probab=95.20  E-value=0.022  Score=47.34  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|.+|||||+.++.+-+.|
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998886

>cd01131 PilT Pilus retraction ATPase PilT

Probab=95.19  E-value=0.017  Score=50.30  Aligned_cols=25  Identities=24%  Similarity=0.593  Sum_probs=22.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .|+|+|.+|||||+..+.+++++..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4899999999999999999998764

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.18  E-value=0.019  Score=46.40  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=20.5

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+|+|.+|||||+.++.+.+.+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998876

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.16  E-value=0.026  Score=47.89  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=25.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .-.|.++|.||||||+.++.+-+.|-..+
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g   30 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARG   30 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            34789999999999999999999998654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF05729 NACHT: NACHT domain

Probab=95.15  E-value=0.023  Score=46.40  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=23.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .++|+|+.|+|||..++.++..+....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            589999999999999999998887654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=95.13  E-value=0.017  Score=49.86  Aligned_cols=25  Identities=40%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |-|+|.||||||+.++.+...|-..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~~   26 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNKR   26 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCcc
Confidence            6799999999999999999999743

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.11  E-value=0.029  Score=51.81  Aligned_cols=54  Identities=15%  Similarity=0.191  Sum_probs=33.6

Q ss_pred             HHhhcCcCCCCCCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         25 CEYHGAKMGSQEPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        25 ~~y~~~~~~~~pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ++|+-+...++-.|--  .....+.....+ -+..++++|++|+|||+.++.+.+.+
T Consensus        13 ~kyrP~~~~~~~~~~~--~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         13 QKYRPSTIDECILPAA--DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             eccCCCcHHHhcCcHH--HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            4555555444433321  122344443333 45677779999999999999998875

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=95.03  E-value=0.019  Score=47.68  Aligned_cols=23  Identities=39%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|+++|++|||||+.++.+.+.|
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            48999999999999999998865

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.01  E-value=0.025  Score=47.97  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+-|+++|.||||||+.+|.+.+-+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3579999999999999999888765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.00  E-value=0.042  Score=50.82  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=28.0

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+...+....+++.|++|+|||+.++.+.+.+..
T Consensus        27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~   62 (337)
T PRK12402         27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG   62 (337)
T ss_pred             HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            344444454457999999999999999999998753

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=94.97  E-value=0.035  Score=49.74  Aligned_cols=28  Identities=36%  Similarity=0.449  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .....+++.|++|+|||+.++.+.+.+.
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3456799999999999999999988765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.94  E-value=0.022  Score=49.07  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |.|+|.||||||+.++.+...|
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999998887

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=94.93  E-value=0.055  Score=44.70  Aligned_cols=28  Identities=36%  Similarity=0.475  Sum_probs=24.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .....|++.|+.|||||+.+|.+.+.|-
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3456899999999999999999998874

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=94.92  E-value=0.024  Score=45.11  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..+.+.+.|+||||||+.++.++
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            45789999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR00235 udk uridine kinase

Probab=94.92  E-value=0.026  Score=49.23  Aligned_cols=27  Identities=33%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +...|.|+|.||||||+.++.+...+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456788999999999999999988765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=94.90  E-value=0.025  Score=47.68  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ....|+|+|.||+|||+.+..+++.
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3678999999999999999877765

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK06547 hypothetical protein; Provisional

Probab=94.90  E-value=0.048  Score=46.71  Aligned_cols=29  Identities=24%  Similarity=0.204  Sum_probs=24.8

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ......-|+|+|.||||||+.++.+.+-+
T Consensus        11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         11 CGGGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            35667889999999999999999988764

>PLN03025 replication factor C subunit; Provisional

Probab=94.88  E-value=0.041  Score=51.40  Aligned_cols=56  Identities=20%  Similarity=0.215  Sum_probs=40.1

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +++|+-+...++-.|--.+  ...+.+...+.-..+++.|.+|+|||+.++.+.+.+.
T Consensus         4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025          4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            4566666655554443322  3456666666667899999999999999999998874

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.88  E-value=0.038  Score=50.51  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=27.0

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++.+... ..-.|+|+|++|||||++.+.++.++..
T Consensus        71 ~l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          71 IFRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             HHHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            34444432 2346999999999999999999988753

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=94.86  E-value=0.037  Score=52.26  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++.++..+.  .|+|+|.+|||||+.++.++.++..
T Consensus       137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~  170 (323)
T PRK13833        137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA  170 (323)
T ss_pred             HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence            444555554  5999999999999999999998764

>PRK08084 DNA replication initiation factor; Provisional

Probab=94.84  E-value=0.06  Score=48.17  Aligned_cols=40  Identities=15%  Similarity=0.084  Sum_probs=31.3

Q ss_pred             HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |-.+.+.+........+++.|.+|+|||..++.+.+.+..
T Consensus        32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~   71 (235)
T PRK08084         32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ   71 (235)
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4455555555556679999999999999999988888764

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.81  E-value=0.039  Score=51.86  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +++.......+.+++|+|++|+|||..++.+++.|..
T Consensus        30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~   66 (365)
T TIGR02928        30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE   66 (365)
T ss_pred             HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3344444567789999999999999999999998864

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=94.78  E-value=0.027  Score=48.09  Aligned_cols=24  Identities=33%  Similarity=0.465  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |+|+|++|+|||+..+.+++.|..
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~   25 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKK   25 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhc
Confidence            899999999999999999998754

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0924|consensus

Probab=94.76  E-value=0.069  Score=54.85  Aligned_cols=115  Identities=24%  Similarity=0.293  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcc---hHH-HH---HHHhHHHHHHhcCCccc
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVST---WVE-QQ---ILEANTILEAFGNAKTV  111 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~---~~~-~~---i~~a~~ILeaFGnAkT~  111 (276)
                      ||++-++-   |..-+.||.|||.||+|||||+   .+-|||..-+-....   ..+ .|   +.-|..+-|-.|.---.
T Consensus       357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~  430 (1042)
T KOG0924|consen  357 VFACRDQL---LSVIRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD  430 (1042)
T ss_pred             hHHHHHHH---HHHHhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence            66666544   4445789999999999999998   678888764322110   011 11   22233344444222111


Q ss_pred             cCCCCCcc----cccEEEEecCCCceeeeeeeeeecccccccc-cCCCCCchH
Q psy17386        112 RNDNSSRF----GKFMQVCFDPKWMIKGCIIQDYLLEQSRITF-QSPGERNYH  159 (276)
Q Consensus       112 ~N~nSSRf----gk~~~l~f~~~g~i~ga~i~~yLLEksRV~~-~~~~ErnfH  159 (276)
                      .=.-|=||    +.-..|-|-.+|.+.--.+..-+|+|-+|+- -...||.-+
T Consensus       431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslN  483 (1042)
T KOG0924|consen  431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN  483 (1042)
T ss_pred             ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccc
Confidence            11223343    3344566666777666667777788877764 556788654

>PF12846 AAA_10: AAA-like domain

Probab=94.74  E-value=0.031  Score=50.16  Aligned_cols=30  Identities=33%  Similarity=0.447  Sum_probs=25.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      |..++|.|.+|||||+.++.++..+...+.
T Consensus         1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~   30 (304)
T PF12846_consen    1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP   30 (304)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence            456899999999999999999988887654

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.73  E-value=0.033  Score=47.73  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=22.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ++++.|.||+|||+.++.+-++|-
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999999988

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=94.70  E-value=0.026  Score=49.35  Aligned_cols=25  Identities=36%  Similarity=0.421  Sum_probs=22.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..-||+||.||+|||+.+|.+++-.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4568999999999999999999886

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=94.69  E-value=0.024  Score=45.73  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |+++|.+|||||+.++.+.+.+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            89999999999999999987764

...

>PTZ00301 uridine kinase; Provisional

Probab=94.69  E-value=0.028  Score=49.77  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |-|+|-||||||+.++.+.+.|.
T Consensus         6 IgIaG~SgSGKTTla~~l~~~l~   28 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             EEEECCCcCCHHHHHHHHHHHHH
Confidence            67899999999999999987763

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=94.67  E-value=0.03  Score=48.08  Aligned_cols=24  Identities=38%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |.|+|.||||||+.++.+.+.|..
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~   25 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRV   25 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999999863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.63  E-value=0.029  Score=48.22  Aligned_cols=26  Identities=31%  Similarity=0.566  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|+++|++|||||+..+.++..+-
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            46799999999999999999888764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=94.62  E-value=0.061  Score=49.28  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=28.5

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.....+....++++|++|+|||+.++.+.+.+.
T Consensus        27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            3455555555445689999999999999999988874

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.59  E-value=0.026  Score=52.95  Aligned_cols=28  Identities=36%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ++.+.+=|-||||||||.+++.||+.|-
T Consensus        29 ~~GE~lgiVGESGsGKS~~~~aim~llp   56 (316)
T COG0444          29 KKGEILGIVGESGSGKSVLAKAIMGLLP   56 (316)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence            4668899999999999999999999986

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=94.57  E-value=0.052  Score=50.58  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=27.1

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++.+...  ...|+++|.+|||||+.++.+++++..
T Consensus       125 L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       125 LREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             HHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            3344443  357999999999999999999999865

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK06217 hypothetical protein; Validated

Probab=94.55  E-value=0.03  Score=47.92  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|+|+|-||||||+.++.+-+.|-
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            499999999999999999888763

>PRK00889 adenylylsulfate kinase; Provisional

Probab=94.54  E-value=0.043  Score=46.34  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +...|++.|.+|||||+.++.+.+.|..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~   30 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLRE   30 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4568999999999999999999999864

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=94.52  E-value=0.074  Score=47.19  Aligned_cols=32  Identities=25%  Similarity=0.301  Sum_probs=27.5

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ..+...|.|+|.+|||||+.++.+...|...+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~   61 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG   61 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence            35678899999999999999999999887644

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=94.51  E-value=0.027  Score=52.21  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=17.2

Q ss_pred             ceEEEeCCCCCChhHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~i   76 (276)
                      +-|||+|.||||||++.+.+
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l   21 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL   21 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH
Confidence            46999999999999987654

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF13245 AAA_19: Part of AAA domain

Probab=94.51  E-value=0.062  Score=39.92  Aligned_cols=28  Identities=29%  Similarity=0.319  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+...++.|..|||||++...++.++..
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~   36 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELLA   36 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4566778999999999888888888774

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.50  E-value=0.035  Score=43.54  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |.|.|++|.|||..++.+.+.|...
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHH
Confidence            6799999999999999998887753

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.50  E-value=0.025  Score=47.03  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |++.|.+|||||+.++.+-+.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            67899999999999999998864

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.44  E-value=0.029  Score=46.05  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |+|+|.||||||+.++.+++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999988753

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.44  E-value=0.027  Score=47.49  Aligned_cols=25  Identities=40%  Similarity=0.392  Sum_probs=22.0

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +-|++.|.||||||+.++.+.+.+.
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            5689999999999999999988653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=94.44  E-value=0.038  Score=45.93  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |+++|.+|||||+.++.+.+.+..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~   25 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQ   25 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999999999863

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=94.39  E-value=0.03  Score=48.00  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.|+|+|.||||||+..+.+...+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            579999999999999999997764

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.37  E-value=0.09  Score=50.12  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=40.4

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..++|+-+...++--|-..+  +.++.++.. +-+++++++|+.|+|||+.++.+.+.|-+
T Consensus         6 l~~kyrP~~~~~iiGq~~~~--~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961          6 LARKWRPQYFRDIIGQKHIV--TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             HHHHhCCCchhhccChHHHH--HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            35677766666654333222  234555444 56789999999999999999999998853

>PRK14737 gmk guanylate kinase; Provisional

Probab=94.34  E-value=0.034  Score=48.22  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..-.||++|.||||||+.++.+++.+
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            34569999999999999999998875

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=94.34  E-value=0.037  Score=49.22  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |-|+|.||||||+.++.+...|..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhh
Confidence            568999999999999999998853

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.27  E-value=0.041  Score=44.91  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +|++.|.+|||||+.++.+-+.|-
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988763

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=94.18  E-value=0.1  Score=45.94  Aligned_cols=29  Identities=14%  Similarity=0.244  Sum_probs=25.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .....+++.|++|+|||..++.+.+.+..
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~   68 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADASY   68 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45678999999999999999999887654

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.17  E-value=0.048  Score=44.05  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +++.|.+|+|||+.++.++..++.
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~   25 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT   25 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999998875

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=94.14  E-value=0.069  Score=51.79  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+...+...++++.|++|+|||+.++.+.+.+
T Consensus        25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         25 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             hHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456777777777899999999999999999987764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.14  E-value=0.045  Score=46.15  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..|++.|.+|||||+.++.+.+.+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998775

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.13  E-value=0.073  Score=50.60  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             HhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         49 SLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .......+..++|+|.+|+|||..++.+++.+..
T Consensus        48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~   81 (394)
T PRK00411         48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE   81 (394)
T ss_pred             HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3344566788999999999999999999998854

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.09  E-value=0.065  Score=50.74  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=22.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..|+++|.+|||||+..+.++.++.
T Consensus       161 ~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        161 KNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             CcEEEECCCCCCHHHHHHHHHhhCC
Confidence            4599999999999999999888864

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=94.07  E-value=0.042  Score=47.90  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |.|+|-||||||+.++.+.+.+
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999998886

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=94.05  E-value=0.06  Score=46.64  Aligned_cols=30  Identities=20%  Similarity=0.170  Sum_probs=26.2

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+...|.++|.||||||+.++.+.+.|..
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~   50 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE   50 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            356789999999999999999999998854

>PRK14738 gmk guanylate kinase; Provisional

Probab=94.02  E-value=0.05  Score=47.63  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ....-|||+|.||+|||+.++.+.+.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            46688999999999999999888764

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=93.96  E-value=0.055  Score=51.52  Aligned_cols=26  Identities=23%  Similarity=0.471  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|+++|.+|||||+.++.++.++.
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcccC
Confidence            35699999999999999999988864

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=93.95  E-value=0.039  Score=50.60  Aligned_cols=19  Identities=32%  Similarity=0.613  Sum_probs=16.4

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      -|||||.||||||.+.+-+
T Consensus         3 lvIVTGlSGAGKsvAl~~l   21 (286)
T COG1660           3 LVIVTGLSGAGKSVALRVL   21 (286)
T ss_pred             EEEEecCCCCcHHHHHHHH
Confidence            4899999999999987654

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=93.93  E-value=0.041  Score=49.79  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=24.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ....|+++|+.|||||+..+.+++++-.
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~  153 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPP  153 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred             cceEEEEECCCccccchHHHHHhhhccc
Confidence            4577999999999999999999888654

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=93.93  E-value=0.058  Score=51.09  Aligned_cols=35  Identities=20%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +..+.. .....|+++|.+|||||++.+.+++++..
T Consensus       114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~  148 (343)
T TIGR01420       114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK  148 (343)
T ss_pred             HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            344443 23577999999999999999999988653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=93.90  E-value=0.048  Score=44.62  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+++|.+|||||+.++.+.+-+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Confidence            7899999999999999987764

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=93.85  E-value=0.051  Score=52.02  Aligned_cols=29  Identities=24%  Similarity=0.396  Sum_probs=25.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..--|+++|++|||||++.+.+++++...
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~  161 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELAEA  161 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            45789999999999999999999998653

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK04182 cytidylate kinase; Provisional

Probab=93.84  E-value=0.051  Score=45.43  Aligned_cols=23  Identities=35%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|+|+|.+|||||+.++.+.+-|
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999988765

>PRK12377 putative replication protein; Provisional

Probab=93.83  E-value=0.12  Score=47.11  Aligned_cols=43  Identities=23%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++..|..-.+... . ..+.++++|.+|+|||..+..|.+.|..-
T Consensus        86 a~~~a~~~a~~~~-~-~~~~l~l~G~~GtGKThLa~AIa~~l~~~  128 (248)
T PRK12377         86 ALSQAKSIADELM-T-GCTNFVFSGKPGTGKNHLAAAIGNRLLAK  128 (248)
T ss_pred             HHHHHHHHHHHHH-h-cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4444443333332 2 34789999999999999999999998853

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=93.82  E-value=0.087  Score=52.93  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.+..+....++.++|.||+|+|||..++.+.++.
T Consensus        76 ~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~  110 (531)
T TIGR02902        76 ALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA  110 (531)
T ss_pred             HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34444556678999999999999999999998764

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=93.71  E-value=0.066  Score=45.60  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ++.|++.|.+|||||+.++.+.+.+
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc
Confidence            5679999999999999999998775

>PRK04040 adenylate kinase; Provisional

Probab=93.69  E-value=0.065  Score=46.50  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..|+++|.+|+|||+.++.+.+.|.
T Consensus         3 ~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          3 KVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            4699999999999999999998883

>PRK06893 DNA replication initiation factor; Validated

Probab=93.65  E-value=0.15  Score=45.30  Aligned_cols=32  Identities=16%  Similarity=-0.046  Sum_probs=26.7

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ....+.++++.|.+|+|||..+..+.+.++..
T Consensus        35 ~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~   66 (229)
T PRK06893         35 IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN   66 (229)
T ss_pred             hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            34556789999999999999999999887653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=93.62  E-value=0.061  Score=45.45  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |++.|.+|||||+.++.+.+.+-
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999988764

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.58  E-value=0.12  Score=48.05  Aligned_cols=29  Identities=21%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.+.-|-|.|.+|||||+.++.+...|..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~   88 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSR   88 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35567779999999999999888777654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=93.57  E-value=0.066  Score=46.18  Aligned_cols=26  Identities=35%  Similarity=0.466  Sum_probs=23.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -.|.|.|.||||||+.++.++..|..
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhh
Confidence            46889999999999999999999875

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=93.56  E-value=0.065  Score=46.25  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|+|.|.||||||+-++.+.+.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999883

>PRK14531 adenylate kinase; Provisional

Probab=93.52  E-value=0.075  Score=45.47  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      |.|++.|.+|||||+.++.+.+.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998875

>KOG0922|consensus

Probab=93.51  E-value=0.098  Score=53.33  Aligned_cols=115  Identities=24%  Similarity=0.365  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcchH---H-HHHH---HhHHHHHHhcCC---
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWV---E-QQIL---EANTILEAFGNA---  108 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~---~-~~i~---~a~~ILeaFGnA---  108 (276)
                      ||+..++-   |..-.++|.+|+-||+|||||+   .|-|||...+-.....+   + .||.   -|..+-|-.|+-   
T Consensus        52 I~~~r~~i---l~~ve~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~  125 (674)
T KOG0922|consen   52 IYKYRDQI---LYAVEDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE  125 (674)
T ss_pred             HHHHHHHH---HHHHHHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence            56555544   3334568999999999999999   78999976543221111   1 1222   244566666653   


Q ss_pred             ---ccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccc-cCCCCCchHHH
Q psy17386        109 ---KTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITF-QSPGERNYHVF  161 (276)
Q Consensus       109 ---kT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~-~~~~ErnfHIF  161 (276)
                         -|++=++++  ++-.++-|=.+|.+.--.+..=+|+|--|+- -...||+-|.-
T Consensus       126 ~VGY~IRFed~t--s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TD  180 (674)
T KOG0922|consen  126 EVGYTIRFEDST--SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTD  180 (674)
T ss_pred             eeeeEEEecccC--CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHH
Confidence               222222221  2345566666665544444444577766655 45579988864

>PRK14527 adenylate kinase; Provisional

Probab=93.51  E-value=0.076  Score=45.65  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.|++.|.+|||||+.++.+.+.+.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999998876653

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=93.49  E-value=0.068  Score=43.13  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |++.|++|+|||+.++.+.+-+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7999999999999999888887

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=93.46  E-value=0.065  Score=51.59  Aligned_cols=28  Identities=29%  Similarity=0.340  Sum_probs=24.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .--|+++|.+|||||++.+.+++++...
T Consensus       149 ~GlilI~G~TGSGKTT~l~al~~~i~~~  176 (372)
T TIGR02525       149 AGLGLICGETGSGKSTLAASIYQHCGET  176 (372)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4469999999999999999999998753

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=93.44  E-value=0.08  Score=45.38  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+++.|.||||||+.++.+...+.
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999888764

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.41  E-value=0.092  Score=52.34  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=38.4

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+|+-+...++-  +|+-.    .++.+. .++-+|+++++|..|.|||+.++.+-+.|-+
T Consensus         4 a~KyRP~~f~dliGQe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964          4 ALKYRPSSFKDLVGQDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             hHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence            4566666555543  44432    344443 4556899999999999999999999988744

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=93.37  E-value=0.12  Score=51.67  Aligned_cols=57  Identities=16%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHH-hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSS-LQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~-m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++.-|--.+  +.++. +...+-.++++++|+.|.|||++++.+.+.|-+
T Consensus        12 a~kyRP~~f~dliGq~~vv--~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         12 ARKYRPSNFAELQGQEVLV--KVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             hhhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3456655544443222222  23333 344556899999999999999999999999865

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.34  E-value=0.12  Score=51.35  Aligned_cols=55  Identities=15%  Similarity=0.243  Sum_probs=38.2

Q ss_pred             HHHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++  ..|+..    ..+.+...+ -.++++++|+.|+|||+.++.+.+.|-+
T Consensus         9 ~~KyRP~~f~dvVGQe~iv~----~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956          9 SRKYRPQFFRDVIHQDLAIG----ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             HHHhCCCCHHHHhChHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            345665554443  345443    344444444 4678999999999999999999999865

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.34  E-value=0.058  Score=49.65  Aligned_cols=29  Identities=34%  Similarity=0.468  Sum_probs=23.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      --+++.|.||||||++.|+|-+-+.-.++
T Consensus        28 ef~vliGpSGsGKTTtLkMINrLiept~G   56 (309)
T COG1125          28 EFLVLIGPSGSGKTTTLKMINRLIEPTSG   56 (309)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence            45788999999999999999887665443

>PRK03839 putative kinase; Provisional

Probab=93.33  E-value=0.076  Score=44.99  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|++.|-+|||||+.++.+-+-+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999988875

>PRK08727 hypothetical protein; Validated

Probab=93.27  E-value=0.17  Score=45.16  Aligned_cols=31  Identities=19%  Similarity=0.146  Sum_probs=26.0

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ....+.|++.|.+|+|||..+..+...++..
T Consensus        38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~   68 (233)
T PRK08727         38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA   68 (233)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4455789999999999999999988887654

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=93.27  E-value=0.095  Score=43.37  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .|.+.|.+|||||+.++.++++|...+
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g   28 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRG   28 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence            478999999999999999999998543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=93.25  E-value=0.11  Score=52.17  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=41.9

Q ss_pred             HHHHhhcCcCCCCCCchhHHH--HHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALA--EAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA--~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++|+-+...++.-|-=.+.  +.+.+.+.... ..+-++++|.+|+|||++.+.+.+-|.
T Consensus         9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen    9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            456777777777777765443  34455554444 356778899999999999999888864

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=93.23  E-value=0.095  Score=45.05  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....+.....+.|++.|..|+|||..++.+++.+
T Consensus        11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen   11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            3445556678999999999999999999999887

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PHA00729 NTP-binding motif containing protein

Probab=93.20  E-value=0.17  Score=45.51  Aligned_cols=39  Identities=31%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             HHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         42 LAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        42 vA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +|....+.+... .-..|+|+|.+|+|||+.+..+.+.+.
T Consensus         4 ~~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729          4 LAKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             HHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344444444333 346899999999999999999988765

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.17  E-value=0.16  Score=48.97  Aligned_cols=56  Identities=16%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             HHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         25 CEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        25 ~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++|+-....++--|-..  ...++.++.. +-+++++++|+.|.|||+.++.+-+.|-+
T Consensus         8 ~k~RP~~~~eiiGq~~~--~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955          8 RKYRPKKFADITAQEHI--TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             HhcCCCcHhhccChHHH--HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45665555555444332  2346666665 56788999999999999999999998855

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=93.15  E-value=0.12  Score=37.24  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=18.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+|+|++|||||+..-.+.--|.
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            589999999999998766554443

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=93.14  E-value=0.12  Score=44.16  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=21.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+..|+|.||+|+||+..++.|-++
T Consensus        20 ~~~~pVlI~GE~GtGK~~lA~~IH~~   45 (168)
T PF00158_consen   20 SSDLPVLITGETGTGKELLARAIHNN   45 (168)
T ss_dssp             TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence            45688999999999999999988774

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=93.12  E-value=0.078  Score=48.55  Aligned_cols=24  Identities=17%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.||++|.+|||||+.++.+.+.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            579999999999999999998887

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=93.11  E-value=0.1  Score=44.56  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..-|||+|.||||||+.++.+++-+-
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            35699999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=93.10  E-value=0.081  Score=45.44  Aligned_cols=24  Identities=33%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|.|||.+|||||+-++.+-+++.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            388999999999999999998864

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=93.07  E-value=0.1  Score=44.47  Aligned_cols=31  Identities=29%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             HhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         49 SLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .+...-+++.+++.|.||+|||+....++..
T Consensus        28 ~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   28 ELKELLKGKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             HHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             HHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3444445589999999999999987766655

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=93.06  E-value=0.16  Score=44.36  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      ...+.-.|-++|-||||||+.+..+-+-|...+-
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~   52 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY   52 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence            3445678999999999999999999998887543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=93.03  E-value=0.083  Score=42.32  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=22.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.|.|++|||||+..+.+...+.
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCCEEEEEccCCCccccceeeeccccc
Confidence            467899999999999998877666544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=93.02  E-value=0.087  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |+++|-+|||||+.++.+-++|..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~   25 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSE   25 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            899999999999999999999854

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=93.00  E-value=0.087  Score=47.10  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.5

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |-|+|-||||||+.++.+.+.|-
T Consensus        11 IgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572          11 IGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhC
Confidence            44699999999999999999887

>PRK07667 uridine kinase; Provisional

Probab=92.95  E-value=0.096  Score=45.33  Aligned_cols=26  Identities=23%  Similarity=0.119  Sum_probs=22.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      --|-|+|.+|||||+.++.+.+.|..
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~~   43 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMKQ   43 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            36678999999999999999888754

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=92.90  E-value=0.12  Score=43.44  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .|++.|++|+|||+.+..+...+...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~   27 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKK   27 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            47899999999999999999888765

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=92.86  E-value=0.1  Score=44.63  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888776543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK04195 replication factor C large subunit; Provisional

Probab=92.85  E-value=0.11  Score=51.47  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....++++|++|+|||+.++.+.+.+
T Consensus        37 ~~~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         37 KPKKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            336899999999999999999998876

>PRK14528 adenylate kinase; Provisional

Probab=92.85  E-value=0.11  Score=44.79  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=21.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.|++.|.+|||||+.++.+.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            459999999999999999987765

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=92.78  E-value=0.12  Score=51.37  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=26.0

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .++.+... ..--|+++|++|||||++.+.+++++.
T Consensus       233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence            34444432 234689999999999999998888864

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=92.77  E-value=0.097  Score=45.82  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=92.76  E-value=0.33  Score=51.79  Aligned_cols=37  Identities=35%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             HHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +++..+.. ..+.++.|+|.+|+|||.+++.+++-|..
T Consensus       770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe  807 (1164)
T PTZ00112        770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH  807 (1164)
T ss_pred             HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44444443 34456779999999999999999998864

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=92.72  E-value=0.11  Score=45.24  Aligned_cols=27  Identities=33%  Similarity=0.444  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999988877654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=92.66  E-value=0.11  Score=45.31  Aligned_cols=27  Identities=33%  Similarity=0.439  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.66  E-value=0.21  Score=49.50  Aligned_cols=54  Identities=17%  Similarity=0.352  Sum_probs=38.0

Q ss_pred             HHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         25 CEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        25 ~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++|+.+...++  ++|+    .+.++.+...+ -+++++++|+.|+|||+.++.+.+.|-.
T Consensus         6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962          6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45666655554  3454    34455555544 4578999999999999999999887653

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=92.63  E-value=0.12  Score=44.91  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=23.1

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..++..|++.|.+|||||+....++..+
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            4678999999999999999999998887

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.63  E-value=0.095  Score=48.20  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=36.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhhccCC---cch-----HHHHHHHhHHHHHHhc
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSVTSNV---STW-----VEQQILEANTILEAFG  106 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~---~~~-----~~~~i~~a~~ILeaFG  106 (276)
                      .+...+-+-||||+|||+..|.+++-+--.++.-   ...     .+++......+|+..|
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg   97 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG   97 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhC
Confidence            4667899999999999999999999876444421   111     2223334566777777

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.60  E-value=0.21  Score=50.43  Aligned_cols=55  Identities=16%  Similarity=0.332  Sum_probs=38.8

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-....++-  +|+..    ....++.. +-.++++++|+.|+|||+.++.+.+.|-+
T Consensus         7 a~KyRP~~f~diiGq~~~v~----~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957          7 ARKYRPQSFAEVAGQQHALN----SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             HHHHCcCcHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567666555554  44433    24444444 55678999999999999999999999864

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=92.60  E-value=0.23  Score=40.51  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +....|++.|+=|||||+-+|-+++.|.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4568899999999999999999999873

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=92.57  E-value=0.12  Score=44.96  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..+.+.-.+
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467889999999999999888887654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=92.52  E-value=0.12  Score=44.83  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456889999999999999988887654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.52  E-value=0.28  Score=46.46  Aligned_cols=58  Identities=12%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..++|+.....++--|-.+  -+.++..... +-++.++++|+.|.|||+.++.+.+.+..
T Consensus         7 ~~~k~rP~~~~~iig~~~~--~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~   65 (367)
T PRK14970          7 SARKYRPQTFDDVVGQSHI--TNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ   65 (367)
T ss_pred             HHHHHCCCcHHhcCCcHHH--HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4567877777776655443  3455555544 45789999999999999999999998865

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=92.51  E-value=0.12  Score=44.95  Aligned_cols=27  Identities=26%  Similarity=0.350  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=92.48  E-value=0.12  Score=45.05  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|++|||||+..|.+.-.+.
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999888876643

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=92.48  E-value=0.13  Score=46.59  Aligned_cols=29  Identities=17%  Similarity=0.350  Sum_probs=25.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..-.+++.|++|+|||+.++.+-+.|...
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~   69 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKEM   69 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            44679999999999999999999987654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=92.47  E-value=0.12  Score=45.41  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|++|||||+..|.+.-.+.
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            3568899999999999999888876543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=92.42  E-value=0.12  Score=45.52  Aligned_cols=28  Identities=29%  Similarity=0.245  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678999999999999999888876654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=92.42  E-value=0.22  Score=50.97  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             HHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         48 SSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ........++.++|.|++|+|||+.++.+.+...
T Consensus       167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            3344556788999999999999999999987764

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=92.41  E-value=0.2  Score=42.60  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=25.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...-.|+++|.+|||||+.++.+...|..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~   44 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLES   44 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44568999999999999999999998853

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=92.40  E-value=0.12  Score=48.68  Aligned_cols=28  Identities=29%  Similarity=0.246  Sum_probs=24.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..+.|+..+.
T Consensus        31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         31 TEGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            4678999999999999999999887653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=92.38  E-value=0.13  Score=45.24  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999988776

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=92.36  E-value=0.25  Score=45.45  Aligned_cols=30  Identities=23%  Similarity=0.191  Sum_probs=27.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..+-+|-+.|+.|||||+..+++.+.|-..
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~   47 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED   47 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            578899999999999999999999999876

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=92.36  E-value=0.19  Score=52.37  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=30.9

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+...++..++++.|++|+|||+.++.+-+.+
T Consensus        41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~   76 (725)
T PRK13341         41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT   76 (725)
T ss_pred             HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            456777777788899999999999999999988765

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=92.33  E-value=0.086  Score=52.38  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.+.|.|+||||||+..|.++..+.-
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p  387 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLDP  387 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57799999999999999999999887653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK06761 hypothetical protein; Provisional

Probab=92.33  E-value=0.11  Score=48.25  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=23.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .-|+++|.+|||||+.++.+.+.|..
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            46999999999999999999999864

>PRK12608 transcription termination factor Rho; Provisional

Probab=92.33  E-value=0.17  Score=48.84  Aligned_cols=42  Identities=19%  Similarity=0.157  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        41 avA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++.++...|.--++-|.++|.|++|+|||+.++.+.+.+..
T Consensus       118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            567788888888888999999999999999999999988765

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=92.31  E-value=0.1  Score=48.44  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .+-|+++|.||||||+.++.+-
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            3579999999999999999873

>PRK14530 adenylate kinase; Provisional

Probab=92.28  E-value=0.13  Score=45.15  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+|.|.+|||||+.++.+.+.+-
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999988764

>PRK08356 hypothetical protein; Provisional

Probab=92.28  E-value=0.1  Score=45.02  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~   78 (276)
                      --|+++|.+|||||+.++.+-+
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999855

>PRK00698 tmk thymidylate kinase; Validated

Probab=92.26  E-value=0.16  Score=43.52  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=23.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +-.|+|.|.+|||||+.++.+-++|..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~   29 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQ   29 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            357999999999999999999998754

>cd00879 Sar1 Sar1 subfamily

Probab=92.25  E-value=0.26  Score=41.50  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             HHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         44 EAAYSSLQNLDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        44 ~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..++..|-...+.-.|++.|.+|||||+..+.+.
T Consensus         7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~   40 (190)
T cd00879           7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLK   40 (190)
T ss_pred             HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHh
Confidence            4456666555667779999999999999876543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=92.24  E-value=0.15  Score=42.77  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.|+++|-+|||||+.++.+-+.|.
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg   27 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG   27 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5699999999999999999988763

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=92.24  E-value=0.13  Score=48.46  Aligned_cols=28  Identities=21%  Similarity=0.410  Sum_probs=24.1

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ...|+|+|.+|||||+.++.++.++...
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~  175 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEMVIQ  175 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            4679999999999999999999886543

>PRK13947 shikimate kinase; Provisional

Probab=92.24  E-value=0.14  Score=42.71  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|++.|.+|||||+.++.+-+-|-
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            499999999999999999877653

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=92.24  E-value=0.18  Score=36.90  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |+++|..|+|||+.+..+.+.|+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~   25 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK   25 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            688999999999999999999986

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=92.23  E-value=0.13  Score=46.73  Aligned_cols=25  Identities=48%  Similarity=0.632  Sum_probs=22.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .|++.|.||||||...+.++.++..
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~   39 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRH   39 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcc
Confidence            5899999999999999999998765

This is thought to be an ATPase involved in viral DNA packaging [].

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=92.21  E-value=0.14  Score=43.42  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999888876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08116 hypothetical protein; Validated

Probab=92.21  E-value=0.3  Score=44.72  Aligned_cols=29  Identities=28%  Similarity=0.272  Sum_probs=25.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+..+++.|.+|+|||..+..|.+.|...
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~  141 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELIEK  141 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            34579999999999999999999998764

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=92.21  E-value=0.26  Score=50.34  Aligned_cols=59  Identities=15%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..++|+.....++--|-..+  +.++.+. ..+-.++++++|..|+|||+.++.+.+.|.+.
T Consensus         6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~   65 (605)
T PRK05896          6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL   65 (605)
T ss_pred             HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            35567766555554333222  3444444 44668999999999999999999999998653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=92.19  E-value=0.13  Score=45.56  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888877654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=92.18  E-value=0.14  Score=44.24  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            356889999999999999888887654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=92.18  E-value=0.13  Score=48.45  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=24.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..+.|+..+.
T Consensus        39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~   66 (327)
T PRK11308         39 ERGKTLAVVGESGCGKSTLARLLTMIET   66 (327)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence            4678999999999999999999888754

>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=92.16  E-value=0.12  Score=44.43  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=20.3

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...|+|.|+||+|||+.+-.+++-
T Consensus        18 G~GVLi~G~SG~GKS~lAl~Li~r   41 (171)
T PF07475_consen   18 GVGVLITGPSGIGKSELALELIKR   41 (171)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999988777653

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=92.15  E-value=0.16  Score=42.69  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |.+.|.+|||||+.++.+++.|...
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~~~   26 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALKAR   26 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            6789999999999999999998754

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK13764 ATPase; Provisional

Probab=92.14  E-value=0.14  Score=52.22  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...|+++|.+|||||+.++.+++++..
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            355999999999999999999999864

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=92.13  E-value=0.14  Score=43.12  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |+|.|..|||||+.++.+.++|..
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~~   26 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLEA   26 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999999864

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=92.12  E-value=0.16  Score=43.74  Aligned_cols=26  Identities=31%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      =.|.++|.+|+|||+.++.+...|..
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~   31 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLRE   31 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence            35899999999999999999888765

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=92.11  E-value=0.14  Score=46.61  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=24.8

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -.+..++=|.||||||||+.++.++-+.--
T Consensus        30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          30 IERGETLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             ecCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence            356788999999999999999888777543

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=0.41  Score=46.00  Aligned_cols=64  Identities=23%  Similarity=0.331  Sum_probs=43.9

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCC------cchHHHHHHHhHHHHHHhcCC
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNV------STWVEQQILEANTILEAFGNA  108 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~------~~~~~~~i~~a~~ILeaFGnA  108 (276)
                      .++...+....+-.|++.|.+|+|||.++|.+++-+-..+...      +......-.-...|+.+||+.
T Consensus        31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~  100 (366)
T COG1474          31 SFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV  100 (366)
T ss_pred             HHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence            3466677777777799999999999999999999998765432      111112222334567777733

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=92.11  E-value=0.11  Score=48.55  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|+++|.+|||||+.++.++.++.
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCC
Confidence            46899999999999999998887754

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=92.08  E-value=0.28  Score=49.11  Aligned_cols=55  Identities=16%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++-  +|+-    ++.+++. ..+-+++++++|..|.|||+.++.+.+.|-+
T Consensus         7 ~~kyRP~~f~divGq~~v~----~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958          7 ARKWRPRCFQEVIGQAPVV----RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             HHHHCCCCHHHhcCCHHHH----HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            5677766655553  4443    3455554 4567889999999999999999999999854

>cd04155 Arl3 Arl3 subfamily

Probab=92.08  E-value=0.2  Score=41.37  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             HHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         48 SSLQNLDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      +.+....+.-.|++.|.+|+|||+..+.+.
T Consensus         6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~   35 (173)
T cd04155           6 RKLRKSSEEPRILILGLDNAGKTTILKQLA   35 (173)
T ss_pred             HHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence            334444456679999999999999877664

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=92.08  E-value=0.22  Score=42.56  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=29.7

Q ss_pred             HHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         47 YSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        47 y~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++.+.. .+-++++++.|++|.|||+.++.+.+.+...
T Consensus         4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~   41 (188)
T TIGR00678         4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE   41 (188)
T ss_pred             HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            344443 4467999999999999999999999998653

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PF13173 AAA_14: AAA domain

Probab=92.06  E-value=0.17  Score=40.54  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ++.+++.|..|+|||+.++.+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            46799999999999999999998877

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=92.06  E-value=0.14  Score=44.72  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888765443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=92.05  E-value=0.14  Score=47.33  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=22.2

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |.++|-||||||+.++.+.+.|...
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~~~   26 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFARE   26 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhc
Confidence            7789999999999999999988643

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=92.05  E-value=0.15  Score=42.95  Aligned_cols=26  Identities=31%  Similarity=0.285  Sum_probs=21.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++++.|++|+|||..+..++...+..
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~   26 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLAR   26 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            47899999999999988887776643

A related protein is found in archaea.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=92.02  E-value=0.15  Score=44.24  Aligned_cols=27  Identities=33%  Similarity=0.512  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999988887643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK02496 adk adenylate kinase; Provisional

Probab=92.01  E-value=0.15  Score=43.39  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|++.|.+|||||+.++.+.+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999998765

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=92.01  E-value=0.13  Score=45.32  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            456889999999999999988876544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=92.00  E-value=0.13  Score=44.63  Aligned_cols=27  Identities=37%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467889999999999999988876654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=92.00  E-value=0.3  Score=42.46  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +|.+.++. ..++..++.|..|+|||+..+.+.+.+...
T Consensus         8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~   45 (196)
T PF13604_consen    8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA   45 (196)
T ss_dssp             HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            34555544 456889999999999999999999988764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=92.00  E-value=0.15  Score=45.26  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999988887654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=91.99  E-value=0.41  Score=42.46  Aligned_cols=43  Identities=23%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             HHHHHHHhHhcCC--CceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         43 AEAAYSSLQNLDV--NQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        43 A~~Ay~~m~~~~~--~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      |-.+.+.+.....  -..++|.|.+|+|||...+.+...+....+
T Consensus        19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~   63 (219)
T PF00308_consen   19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP   63 (219)
T ss_dssp             HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence            4445555554432  357999999999999999999888776433

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=91.99  E-value=0.15  Score=44.17  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999888877654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK06620 hypothetical protein; Validated

Probab=91.98  E-value=0.3  Score=43.26  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=18.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~   78 (276)
                      .++++.|++|+|||..++.+.+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~   66 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQN   66 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHh
Confidence            7899999999999998886433

>PRK13946 shikimate kinase; Provisional

Probab=91.97  E-value=0.16  Score=43.51  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|-+|||||+..+.+-+.|
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999988876

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=91.96  E-value=0.15  Score=44.55  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=21.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..+.+.-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45688999999999999998887654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=91.96  E-value=0.15  Score=45.16  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        25 RPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            457889999999999999888876543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=91.95  E-value=0.13  Score=48.50  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=24.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..+.|+..+.
T Consensus        40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         40 RAGETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            4678999999999999999999887764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=91.92  E-value=0.16  Score=44.06  Aligned_cols=27  Identities=37%  Similarity=0.474  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            467889999999999999988877654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=91.92  E-value=0.18  Score=46.43  Aligned_cols=29  Identities=21%  Similarity=0.224  Sum_probs=25.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +...|++.|.+|+|||+++..+..+++..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            35689999999999999999999888754

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=91.91  E-value=0.15  Score=45.03  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            456889999999999999998887655

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00072 GuKc Guanylate kinase homologues

Probab=91.90  E-value=0.14  Score=43.88  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -||++|.|||||++.++.+++..
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998884

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=91.90  E-value=0.16  Score=46.94  Aligned_cols=27  Identities=26%  Similarity=0.365  Sum_probs=24.0

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .|++.|++|+|||..++.+-+.+...+
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g   86 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLG   86 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            599999999999999999999887643

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=91.87  E-value=0.13  Score=51.72  Aligned_cols=29  Identities=17%  Similarity=0.446  Sum_probs=25.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.|.+.|.|+||||||+..|.++..+.-
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            46799999999999999999999988654

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.85  E-value=0.28  Score=49.33  Aligned_cols=55  Identities=16%  Similarity=0.309  Sum_probs=38.2

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++-  +|+-.    +++.+... +-.++++++|++|.|||+.++.+.+.|-+
T Consensus         7 ~~k~rP~~f~divGq~~v~~----~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (527)
T PRK14969          7 ARKWRPKSFSELVGQEHVVR----ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC   64 (527)
T ss_pred             HHHhCCCcHHHhcCcHHHHH----HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4556655544443  44433    44444444 56788999999999999999999999854

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=91.85  E-value=0.15  Score=44.46  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+ +.+.|.|++|||||+..+.+.-.+
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence            46 899999999999999888876554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=91.84  E-value=0.16  Score=44.27  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..|.+...+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            457889999999999999988876543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK15453 phosphoribulokinase; Provisional

Probab=91.84  E-value=0.15  Score=47.42  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.=-|.|+|-||||||+.++.+.+-|..
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~   31 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR   31 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3346889999999999999988876653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=91.83  E-value=0.16  Score=43.99  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            457889999999999999988876544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=91.81  E-value=0.15  Score=48.16  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..|.|+..+.
T Consensus        45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~   72 (331)
T PRK15079         45 YEGETLGVVGESGCGKSTFARAIIGLVK   72 (331)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence            5678999999999999999999987654

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=91.77  E-value=0.16  Score=43.88  Aligned_cols=25  Identities=28%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+++.|.+|||||...+.++..|+.
T Consensus        40 h~li~G~tgsGKS~~l~~ll~~l~~   64 (205)
T PF01580_consen   40 HLLIAGATGSGKSTLLRTLLLSLAL   64 (205)
T ss_dssp             SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCccHHHHHHHHHHHH
Confidence            6999999999999999988888775

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=91.76  E-value=0.29  Score=46.69  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             HHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         43 AEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        43 A~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |.+.+..+.. .+-+++++|+|+.|.|||+.++.+.+.|.+
T Consensus        31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            3445555554 445889999999999999999999999876

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=91.75  E-value=0.16  Score=44.64  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            466889999999999999888776543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=91.75  E-value=0.4  Score=44.77  Aligned_cols=57  Identities=16%  Similarity=0.231  Sum_probs=36.3

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+.....++.-|--.+  +.++... ..+-.+++++.|++|.|||+.++.+.+.|..
T Consensus         5 ~~~~rp~~~~~iig~~~~~--~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~   62 (355)
T TIGR02397         5 ARKYRPQTFEDVIGQEHIV--QTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNC   62 (355)
T ss_pred             HHHhCCCcHhhccCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3455544444443222222  2333333 3445788999999999999999999998753

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=91.73  E-value=0.16  Score=45.03  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            466899999999999999988876553

>PRK10908 cell division protein FtsE; Provisional

Probab=91.70  E-value=0.17  Score=44.35  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999988877554

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=91.69  E-value=0.21  Score=42.30  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.|.++|.||||||+.++.+++.|...
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~   28 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSAR   28 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            358899999999999999999988754

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=91.65  E-value=0.16  Score=43.08  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |++.|.+|||||+.++.+-+.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999887764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=91.65  E-value=0.44  Score=40.16  Aligned_cols=29  Identities=31%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...-.|+++|+=|||||+-+|-+++.|..
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            45668999999999999999999999984

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.63  E-value=0.24  Score=46.52  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=28.1

Q ss_pred             HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.||-++.... ..+|+++|+.|||||+..+.++.++-
T Consensus       131 ~~~ayL~~~ie~-~~siii~G~t~sGKTt~lnall~~Ip  168 (312)
T COG0630         131 EQAAYLWLAIEA-RKSIIICGGTASGKTTLLNALLDFIP  168 (312)
T ss_pred             HHHHHHHHHHHc-CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            345554443332 36799999999999999999988865

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=91.63  E-value=0.16  Score=47.82  Aligned_cols=28  Identities=29%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+-|.|+||||||+.++.++..+.
T Consensus        31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         31 KQGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4668899999999999999999988764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=91.62  E-value=0.18  Score=42.42  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467889999999999999888877654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=91.60  E-value=0.17  Score=44.76  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..|.+.-.+.
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567899999999999999888776643

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=91.59  E-value=0.17  Score=45.09  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        25 PKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467889999999999999988877554

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.58  E-value=0.18  Score=43.88  Aligned_cols=27  Identities=30%  Similarity=0.544  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999988877654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=91.58  E-value=0.19  Score=43.91  Aligned_cols=28  Identities=25%  Similarity=0.265  Sum_probs=23.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++.|++.|.+|+|||+++-++-.++...
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~   28 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK   28 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence            4679999999999999988877777654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=91.57  E-value=0.18  Score=43.75  Aligned_cols=27  Identities=33%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=91.56  E-value=0.17  Score=44.76  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..|.+.-.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45688999999999999998887765

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=91.55  E-value=0.23  Score=49.43  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=26.7

Q ss_pred             chhHHHHHHHHHhHhc-----CCCceEEEeCCCCCChhHHHH
Q psy17386         38 HVFALAEAAYSSLQNL-----DVNQSCVISGESGAGKTETTK   74 (276)
Q Consensus        38 HifavA~~Ay~~m~~~-----~~~QsIiisGeSGsGKTe~~k   74 (276)
                      ||=.-.+..+...+..     ...+.|.++|+||||||+..+
T Consensus         9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238         9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            3333344555555543     577999999999999999988

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK14974 cell division protein FtsY; Provisional

Probab=91.54  E-value=0.39  Score=45.67  Aligned_cols=29  Identities=31%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++..|++.|.+|+|||+++..+..+|...
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~  167 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN  167 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999888654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=91.54  E-value=0.18  Score=44.00  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            467899999999999999988876554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=91.52  E-value=0.18  Score=42.52  Aligned_cols=26  Identities=35%  Similarity=0.459  Sum_probs=21.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..|.+.-.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45688999999999999987776544

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=91.51  E-value=0.34  Score=41.62  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.+++.|.+|+|||..+..+.+.++.
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~   73 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIR   73 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence            35688999999999999999999998887

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=91.50  E-value=0.18  Score=44.43  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|++|||||+..+.+.-.+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999888776653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=91.49  E-value=0.18  Score=43.97  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888876554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=91.44  E-value=0.3  Score=44.74  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+++.|++|+|||..++.+.+.+.
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999998887764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=91.41  E-value=0.18  Score=44.54  Aligned_cols=28  Identities=36%  Similarity=0.407  Sum_probs=23.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|.+|||||+..|.+.-.+.
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4578999999999999998888876543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=91.41  E-value=0.18  Score=44.66  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ...+.+.+.|+||||||+.++.++
T Consensus        19 ~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270          19 PRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHH
Confidence            467899999999999999974333

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.40  E-value=0.19  Score=43.19  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.--+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467889999999999999888876654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=91.39  E-value=0.2  Score=43.13  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .....+.+.|+||||||+..+.++
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            355778999999999999998764

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=91.38  E-value=0.29  Score=44.50  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=29.1

Q ss_pred             CchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         37 PHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        37 PHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      |.+=.+-+++.+.+..   ++.|++.|++|+|||+.++.+-+.+
T Consensus         5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640         5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            3444455555544443   4679999999999999999887644

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=91.36  E-value=0.19  Score=44.12  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999888887654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=91.35  E-value=0.18  Score=45.03  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467889999999999999988887643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=91.35  E-value=0.15  Score=45.83  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=17.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKF   75 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~   75 (276)
                      .+.-.+.|.|+||||||+....
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLni   50 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNL   50 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHH
Confidence            3456789999999999996443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=91.35  E-value=0.19  Score=45.23  Aligned_cols=20  Identities=20%  Similarity=0.311  Sum_probs=17.1

Q ss_pred             cHHHHHhhhhhhHHHHHHHH
Q psy17386        229 SFEQLCINYTNEKLHKFFNH  248 (276)
Q Consensus       229 sfeQl~iNy~NEkLq~~f~~  248 (276)
                      +-+++.-|-.+||+++|..+
T Consensus       219 ~p~~~f~~p~~~R~~~FL~~  238 (240)
T COG1126         219 PPEEFFDNPKSERTRQFLSK  238 (240)
T ss_pred             CHHHHhcCCCCHHHHHHHHh
Confidence            67888889999999998765

>PRK13695 putative NTPase; Provisional

Probab=91.34  E-value=0.2  Score=42.29  Aligned_cols=24  Identities=33%  Similarity=0.358  Sum_probs=21.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |.++|++|+|||+.++.+...+..
T Consensus         3 i~ltG~~G~GKTTll~~i~~~l~~   26 (174)
T PRK13695          3 IGITGPPGVGKTTLVLKIAELLKE   26 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            789999999999999998887654

>PRK00625 shikimate kinase; Provisional

Probab=91.32  E-value=0.19  Score=43.06  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|++.|..|||||+.++.+-+.|-
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999987753

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=91.32  E-value=0.2  Score=43.53  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+...+
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888877554

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=91.32  E-value=0.19  Score=44.23  Aligned_cols=28  Identities=32%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|++|||||+..|.+.-.+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            5678999999999999999988877653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=91.31  E-value=0.36  Score=44.97  Aligned_cols=36  Identities=17%  Similarity=0.041  Sum_probs=30.7

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -|..+..+.-..|-++|.+|||||+..+.+++.|..
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~  130 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD  130 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            455666777899999999999999999999998754

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=91.30  E-value=0.19  Score=44.36  Aligned_cols=27  Identities=30%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988887654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=91.28  E-value=0.19  Score=45.32  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988887654

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.27  E-value=0.18  Score=47.34  Aligned_cols=29  Identities=21%  Similarity=0.476  Sum_probs=25.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...=-|+++|.+|||||++.-.++.|+-.
T Consensus       123 ~~~GLILVTGpTGSGKSTTlAamId~iN~  151 (353)
T COG2805         123 SPRGLILVTGPTGSGKSTTLAAMIDYINK  151 (353)
T ss_pred             CCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence            44567999999999999999999999754

>PRK10436 hypothetical protein; Provisional

Probab=91.26  E-value=0.17  Score=50.15  Aligned_cols=36  Identities=25%  Similarity=0.321  Sum_probs=26.4

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++.+.. ...=-|+++|.+|||||++...+++++..
T Consensus       209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~  244 (462)
T PRK10436        209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT  244 (462)
T ss_pred             HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence            3444442 23346889999999999999988888643

>PRK13949 shikimate kinase; Provisional

Probab=91.25  E-value=0.2  Score=42.55  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|++.|.+|||||+.++.+-+.|-
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            599999999999999998887754

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=91.25  E-value=0.24  Score=39.64  Aligned_cols=25  Identities=32%  Similarity=0.628  Sum_probs=23.2

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |+++|.+|+|||..+..+.++|+..
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~   26 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEK   26 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            8899999999999999999999763

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=91.24  E-value=0.2  Score=45.19  Aligned_cols=26  Identities=31%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.|.|++|||||+..|.+.-.+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46789999999999999988876654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00279 adk adenylate kinase; Reviewed

Probab=91.23  E-value=0.21  Score=43.75  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|++.|.+|||||+.++.+-+.+-
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            499999999999999999887754

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=91.23  E-value=0.2  Score=44.30  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456889999999999999888887654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=91.20  E-value=0.2  Score=44.73  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            466889999999999999988877654

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.19  E-value=0.36  Score=49.05  Aligned_cols=57  Identities=12%  Similarity=0.221  Sum_probs=37.8

Q ss_pred             HHhhcCcCCCCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         25 CEYHGAKMGSQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        25 ~~y~~~~~~~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++|+-....++-=|--.+  ..++..+. .+-.+++|++|++|.|||+.++.+.+.|.+.
T Consensus         8 ~kyRP~~~~eiiGq~~~~--~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~   65 (585)
T PRK14950          8 RKWRSQTFAELVGQEHVV--QTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT   65 (585)
T ss_pred             HHhCCCCHHHhcCCHHHH--HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            456655555543222222  22343333 4567899999999999999999999998643

>PRK14532 adenylate kinase; Provisional

Probab=91.18  E-value=0.18  Score=42.89  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|++.|.+|||||+.++.+-+.+-
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999987753

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=91.16  E-value=0.35  Score=45.11  Aligned_cols=47  Identities=21%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCCCchhHHHHHHHHHh----HhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         34 SQEPHVFALAEAAYSSL----QNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        34 ~~pPHifavA~~Ay~~m----~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ++||---..+....+.|    ..-.....|+++|.+|||||+..+.+-+.|
T Consensus       107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L  157 (309)
T PRK08154        107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL  157 (309)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            45554333333333333    334567899999999999999999987765

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=91.13  E-value=0.19  Score=50.96  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=25.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++.-.|+++|.+|||||+.++.+-+.|-.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~  418 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLME  418 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence            35568999999999999999999998865

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=91.12  E-value=0.19  Score=46.27  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |.|.|.||||||+.++.+...|-
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhC
Confidence            67899999999999999988764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=91.12  E-value=0.28  Score=42.07  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+|.|.+|+|||.+...++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            58899999999999988888888

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=91.11  E-value=0.19  Score=46.13  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=23.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|++|||||+..|.+.-.+.
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568899999999999999988877653

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=91.09  E-value=0.18  Score=52.50  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=26.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      ...|.|-|.|+||||||+.+|.+.....-..+
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G  528 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG  528 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            45789999999999999999999988764433

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=91.06  E-value=0.21  Score=45.44  Aligned_cols=27  Identities=30%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          48 REGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999988876654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=91.04  E-value=0.25  Score=46.48  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.+.|.+.|.+|+|||+++..+..++...
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~  141 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ  141 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            56899999999999999999999998754

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=91.01  E-value=0.21  Score=43.69  Aligned_cols=27  Identities=33%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09087 hypothetical protein; Validated

Probab=91.00  E-value=0.37  Score=43.01  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=20.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .+..++|.|++|+|||..++.+.+.
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999988865543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=91.00  E-value=0.22  Score=42.95  Aligned_cols=27  Identities=33%  Similarity=0.413  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467889999999999999998877654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=91.00  E-value=0.21  Score=44.23  Aligned_cols=27  Identities=33%  Similarity=0.447  Sum_probs=23.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|.+|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         25 DQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988888764

>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]

Probab=90.99  E-value=0.18  Score=47.03  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .-|+|+|+||+||||++--+++-
T Consensus       146 vGVLItG~SG~GKSElALeLi~r  168 (308)
T COG1493         146 VGVLITGPSGAGKSELALELIKR  168 (308)
T ss_pred             eEEEEECCCCCCHhHHHHHHHHh
Confidence            67999999999999988766655

>PLN02165 adenylate isopentenyltransferase

Probab=90.98  E-value=0.2  Score=47.55  Aligned_cols=32  Identities=19%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |........|+|.|.+|||||..+..+-+.+-
T Consensus        37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             cccCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            55666677899999999999999988777753

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.98  E-value=0.21  Score=45.17  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467899999999999999999887643

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.97  E-value=0.22  Score=43.12  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3567899999999999999888776644

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=90.96  E-value=0.43  Score=46.56  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|++.|++|+|||+.++.+-+.+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l  132 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARIL  132 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999987765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=90.94  E-value=0.21  Score=44.34  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..+.|.-.
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999998887654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=90.94  E-value=0.36  Score=46.12  Aligned_cols=30  Identities=23%  Similarity=0.422  Sum_probs=25.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..-..|++.|++|+|||+.++.+.+++...
T Consensus        36 p~~~~vli~G~~GtGKs~~ar~~~~~l~~~   65 (350)
T CHL00081         36 PKIGGVMIMGDRGTGKSTTIRALVDLLPEI   65 (350)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            344689999999999999999999998753

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=90.93  E-value=0.23  Score=42.16  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.+.|.||||||+..+.+.-.+
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            466889999999999999888877654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=90.91  E-value=0.16  Score=51.07  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=26.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..-+.+-|.||||||||+.+..++.+|-.-
T Consensus        33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~   62 (539)
T COG1123          33 EPGEILGIVGESGSGKSTLALALMGLLPEG   62 (539)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence            356788899999999999999999998754

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=90.91  E-value=0.18  Score=43.70  Aligned_cols=19  Identities=37%  Similarity=0.625  Sum_probs=17.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |+|+|.+|.|||+.++.+-
T Consensus         3 I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           3 IAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             EEEeCCCCCchHHHHHHHH
Confidence            8999999999999999876

>PLN02348 phosphoribulokinase

Probab=90.90  E-value=0.35  Score=46.91  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=23.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.--|-|.|.||||||+.++.|.+.|-.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~   75 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG   75 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34445668999999999999999999853

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=90.90  E-value=0.46  Score=46.83  Aligned_cols=57  Identities=16%  Similarity=0.208  Sum_probs=40.1

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-....++--|--.+.  .++.+... +-.+++++.|++|.|||+.++.+.+.|.+
T Consensus         8 ~~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c   65 (451)
T PRK06305          8 SRKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC   65 (451)
T ss_pred             HHHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            45566655555544443332  34544444 45799999999999999999999999865

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=90.86  E-value=0.33  Score=45.51  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=24.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.+=.|+++|.||+|||+.++.+.+.|
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l  116 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL  116 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999888

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=90.86  E-value=0.23  Score=43.32  Aligned_cols=27  Identities=33%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+...+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999888877654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=90.86  E-value=0.13  Score=41.87  Aligned_cols=26  Identities=27%  Similarity=0.571  Sum_probs=21.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+..|+|.||+|+||+..++.+-++
T Consensus        19 ~~~~pvli~GE~GtGK~~~A~~lh~~   44 (138)
T PF14532_consen   19 KSSSPVLITGEPGTGKSLLARALHRY   44 (138)
T ss_dssp             CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred             CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence            56677999999999999988866665

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=90.85  E-value=0.23  Score=42.86  Aligned_cols=28  Identities=25%  Similarity=0.348  Sum_probs=23.5

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -...+.+.+.|.+|||||+..+.+...+
T Consensus        28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          28 VPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            3467899999999999999988877654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=90.84  E-value=0.22  Score=42.85  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....+.+.|++|||||+..|.+.-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            456789999999999999988776654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=90.84  E-value=0.23  Score=43.36  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.--+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          25 PTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999888876554

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=90.83  E-value=0.22  Score=44.33  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-.|.|.|.+|||||+.++.+.+.|-
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~   29 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG   29 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999998873

>TIGR01351 adk adenylate kinases

Probab=90.82  E-value=0.21  Score=43.60  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |++.|.+|||||+.++.+-+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8999999999999999987754

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=90.78  E-value=0.23  Score=45.67  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -||++|-+|||||+.++.+.++|..
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~   27 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEE   27 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence            3899999999999999999999986

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=90.78  E-value=0.24  Score=43.68  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999988877643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=90.78  E-value=0.23  Score=42.26  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+...+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999877766554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=90.77  E-value=0.23  Score=43.86  Aligned_cols=27  Identities=19%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          46 PRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999988877643

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=90.77  E-value=0.24  Score=38.32  Aligned_cols=19  Identities=37%  Similarity=0.578  Sum_probs=15.5

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         2 I~V~G~~g~GKTsLi~~l~   20 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLC   20 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHh
Confidence            8999999999999654443

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=90.77  E-value=0.25  Score=41.90  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|.+|||||+..|.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467889999999999999888877654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=90.75  E-value=0.23  Score=45.06  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=23.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..|.|.-.+.
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568899999999999999988876653

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.75  E-value=0.24  Score=44.28  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            456889999999999999998888754

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.74  E-value=0.4  Score=49.59  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             HHHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++  .+|+    .++.+++...+ -.++++++|..|.|||+.++.+.+.|-+
T Consensus         6 arKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960          6 ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             HHHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            356665554444  3444    34455554444 4789999999999999999999998854

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=90.73  E-value=0.26  Score=41.95  Aligned_cols=26  Identities=35%  Similarity=0.459  Sum_probs=23.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .-|+|.|-.|||||+-++.+-+.|..
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56999999999999999999988765

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=90.73  E-value=0.24  Score=43.49  Aligned_cols=27  Identities=26%  Similarity=0.585  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|.+.+.|++|||||+..+.+.-.+
T Consensus        27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            467889999999999999988887654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=90.73  E-value=0.26  Score=41.64  Aligned_cols=27  Identities=37%  Similarity=0.596  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            456889999999999999888877654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=90.71  E-value=0.23  Score=43.85  Aligned_cols=28  Identities=32%  Similarity=0.513  Sum_probs=23.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..+.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4678999999999999998888876653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=90.70  E-value=0.23  Score=43.28  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999988887654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10646 ADP-binding protein; Provisional

Probab=90.69  E-value=0.57  Score=39.66  Aligned_cols=27  Identities=33%  Similarity=0.370  Sum_probs=23.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .-.|++.|+-|||||+.+|-+++.|..
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            347899999999999999999999853

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=90.69  E-value=0.23  Score=44.44  Aligned_cols=27  Identities=30%  Similarity=0.302  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888777654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.68  E-value=0.24  Score=44.13  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356889999999999999988877654

>PRK06921 hypothetical protein; Provisional

Probab=90.68  E-value=0.5  Score=43.25  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=25.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ....+++.|.+|+|||..+..|.+.+...
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~  144 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRK  144 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence            46789999999999999999999988754

>KOG3354|consensus

Probab=90.68  E-value=0.24  Score=42.46  Aligned_cols=26  Identities=31%  Similarity=0.334  Sum_probs=22.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -.|+++|.||||||+..|.+.+-|..
T Consensus        13 ~~i~vmGvsGsGKSTigk~L~~~l~~   38 (191)
T KOG3354|consen   13 YVIVVMGVSGSGKSTIGKALSEELGL   38 (191)
T ss_pred             eeEEEEecCCCChhhHHHHHHHHhCC
Confidence            36999999999999999999887753

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=90.64  E-value=0.25  Score=43.31  Aligned_cols=28  Identities=29%  Similarity=0.425  Sum_probs=23.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..+.+...+-
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999888876643

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.63  E-value=0.24  Score=44.93  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.|.-.+
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467889999999999999988877654

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.63  E-value=0.38  Score=48.15  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=26.4

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+-.++++++|++|+|||+.++.+.+.|.+
T Consensus        33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            445788899999999999999999999864

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=90.61  E-value=0.44  Score=49.11  Aligned_cols=55  Identities=20%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             HHHhhcCcCCCC--CCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++  ..|+-.    +++.++.. +-.++++++|+.|.|||+.++.+.+.|-+
T Consensus         7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994          7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            456665555444  345443    45555544 56788999999999999999999999866

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=90.61  E-value=0.25  Score=43.92  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            466889999999999999888776543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=90.61  E-value=0.2  Score=50.68  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=21.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      =-|+++|.+|||||++...+++++.
T Consensus       317 Glilv~G~tGSGKTTtl~a~l~~~~  341 (564)
T TIGR02538       317 GMVLVTGPTGSGKTVSLYTALNILN  341 (564)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhC
Confidence            4578999999999999998888874

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=90.61  E-value=0.24  Score=45.04  Aligned_cols=27  Identities=19%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.|.-.+
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         36 KSGETVALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456899999999999999888876543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=90.60  E-value=0.24  Score=42.61  Aligned_cols=25  Identities=32%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ...+.+.+.|++|||||+..|.+.-
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4678899999999999998887764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.60  E-value=0.4  Score=51.05  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=39.0

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-....++-  .||-.    .+++++.. +-.+++||+|+.|.|||+.++.+.+.|-+
T Consensus         7 aeKyRP~tFddIIGQe~Iv~----~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc   64 (944)
T PRK14949          7 ARKWRPATFEQMVGQSHVLH----ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC   64 (944)
T ss_pred             HHHhCCCCHHHhcCcHHHHH----HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence            4566655554443  45442    35555444 56778899999999999999999999865

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=90.58  E-value=0.22  Score=44.10  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +---+.+.|.||||||+..|+|+.-.
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhh
Confidence            34557899999999999999887654

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=90.58  E-value=0.27  Score=45.27  Aligned_cols=43  Identities=16%  Similarity=0.112  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        41 avA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..++.....++..+.-+.+++.|.+|||||+..+.+...+...
T Consensus        96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~  138 (270)
T TIGR02858        96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG  138 (270)
T ss_pred             CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence            4566666677766555899999999999999999998887643

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PF13479 AAA_24: AAA domain

Probab=90.57  E-value=0.19  Score=44.23  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      ++..|+|.|+||+|||+.++.+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            4678999999999999987665

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=90.57  E-value=0.24  Score=44.61  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=23.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999887654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.56  E-value=0.25  Score=44.20  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..+.+.-.+
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            466889999999999999888877654

>TIGR00101 ureG urease accessory protein UreG

Probab=90.56  E-value=0.27  Score=42.98  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .|.++|..|||||+..+.+++.+..
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~   27 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQ   27 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCc
Confidence            5889999999999999999988764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PLN02796 D-glycerate 3-kinase

Probab=90.55  E-value=0.23  Score=47.45  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |-|+|.||||||+.++.+...|..
T Consensus       103 IGI~G~sGSGKSTLa~~L~~lL~~  126 (347)
T PLN02796        103 IGISAPQGCGKTTLVFALVYLFNA  126 (347)
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc
Confidence            788999999999999999988864

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=90.54  E-value=0.25  Score=44.00  Aligned_cols=27  Identities=30%  Similarity=0.325  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456889999999999999988877654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=90.52  E-value=0.24  Score=44.30  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999988887654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=90.51  E-value=0.25  Score=44.21  Aligned_cols=27  Identities=19%  Similarity=0.432  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        24 AAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888876554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=90.49  E-value=0.38  Score=41.93  Aligned_cols=34  Identities=15%  Similarity=0.071  Sum_probs=27.8

Q ss_pred             HHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         48 SSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +..+.....-.|.++|-.|||||+..+.+++.+.
T Consensus        14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3445555677899999999999999999998864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.48  E-value=0.25  Score=44.19  Aligned_cols=28  Identities=21%  Similarity=0.188  Sum_probs=23.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..|.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         31 LKNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4678999999999999999988876543

>TIGR00017 cmk cytidylate kinase

Probab=90.48  E-value=0.27  Score=43.72  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|.|.|.+|||||+.++.+.+.|-
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999987654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=90.48  E-value=0.27  Score=42.35  Aligned_cols=27  Identities=22%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            356889999999999999888877654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK01184 hypothetical protein; Provisional

Probab=90.46  E-value=0.22  Score=42.19  Aligned_cols=18  Identities=33%  Similarity=0.453  Sum_probs=15.9

Q ss_pred             eEEEeCCCCCChhHHHHH
Q psy17386         58 SCVISGESGAGKTETTKF   75 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~   75 (276)
                      .|+++|.+|||||+.++.
T Consensus         3 ~i~l~G~~GsGKsT~a~~   20 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSKI   20 (184)
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            488999999999998874

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=90.46  E-value=0.28  Score=41.34  Aligned_cols=27  Identities=30%  Similarity=0.521  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999877776554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.46  E-value=0.25  Score=44.08  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=22.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|.+|||||+..+.|.-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         29 NQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999988888653

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=90.45  E-value=0.25  Score=42.91  Aligned_cols=28  Identities=14%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|++|||||+..+.+.-.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            4678999999999999998888766543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=90.39  E-value=0.55  Score=44.60  Aligned_cols=41  Identities=20%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             HHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         43 AEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        43 A~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++...+... ..+..-.|-|+|.+|||||+.+..++.+|...
T Consensus        42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~   83 (332)
T PRK09435         42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ   83 (332)
T ss_pred             HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            333444333 25677899999999999999999999998764

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.36  E-value=0.26  Score=44.81  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         33 NEGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999888777654

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=90.36  E-value=0.3  Score=41.01  Aligned_cols=27  Identities=30%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+...||+|++|+|||+.+..|.-.|.
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            356789999999999999976655443

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.35  E-value=0.24  Score=49.28  Aligned_cols=40  Identities=28%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ....++.+.... .=-|+++|.+|||||++...+++++-+-
T Consensus       246 ~~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~  285 (500)
T COG2804         246 QLARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNTP  285 (500)
T ss_pred             HHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence            344555554432 2346679999999999999999998753

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=90.35  E-value=0.27  Score=43.06  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888776543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=90.35  E-value=0.31  Score=37.49  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+++.|.+|+|||..+-..+..+...
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~~   27 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDS   27 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHhc
Confidence            37899999999999998888887754

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=90.35  E-value=0.28  Score=41.18  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|.+|||||+..+.+.-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888776543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=90.32  E-value=0.19  Score=45.69  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=28.7

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|..-++.|.++|.|++|+|||+.++.+.+.+.
T Consensus         7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            33455567889999999999999999999887764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=90.32  E-value=0.23  Score=49.81  Aligned_cols=30  Identities=23%  Similarity=0.493  Sum_probs=26.2

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -.+.+.+.|.|+||||||+..|.++..+.-
T Consensus       363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p  392 (576)
T TIGR02204       363 VRPGETVALVGPSGAGKSTLFQLLLRFYDP  392 (576)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence            357799999999999999999999987654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=90.28  E-value=0.18  Score=50.72  Aligned_cols=27  Identities=37%  Similarity=0.540  Sum_probs=25.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..+.++.++
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467999999999999999999999987

>PLN02200 adenylate kinase family protein

Probab=90.27  E-value=0.32  Score=43.70  Aligned_cols=27  Identities=19%  Similarity=0.259  Sum_probs=22.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..-.|++.|.+|||||+.++.+.+.+-
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346789999999999999999888753

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=90.27  E-value=0.27  Score=42.38  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888776654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=90.26  E-value=0.27  Score=43.85  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..+.|.-.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46788999999999999999888764

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=90.25  E-value=0.28  Score=42.76  Aligned_cols=28  Identities=18%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|.+|||||+.++.+.-.+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4678999999999999999888876543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=90.24  E-value=0.23  Score=49.69  Aligned_cols=30  Identities=20%  Similarity=0.432  Sum_probs=26.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +..+.|.|.|+||||||+..+.++..+.--
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~  385 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYEPD  385 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence            467999999999999999999998886543

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK06835 DNA replication protein DnaC; Validated

Probab=90.23  E-value=0.76  Score=43.52  Aligned_cols=29  Identities=28%  Similarity=0.358  Sum_probs=25.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ....+++.|.+|+|||..+..|.+.+...
T Consensus       182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~  210 (329)
T PRK06835        182 NNENLLFYGNTGTGKTFLSNCIAKELLDR  210 (329)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            34889999999999999999999988764

>PRK05428 HPr kinase/phosphorylase; Provisional

Probab=90.22  E-value=0.25  Score=46.41  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      -.++|+|+||+|||+.+-.+++.
T Consensus       147 ~GvLi~G~SG~GKSelALeLi~r  169 (308)
T PRK05428        147 IGVLITGESGIGKSETALELIKR  169 (308)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            67999999999999998877765

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=90.22  E-value=0.27  Score=43.41  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888776543

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=90.22  E-value=0.58  Score=43.02  Aligned_cols=43  Identities=26%  Similarity=0.276  Sum_probs=29.3

Q ss_pred             CchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         37 PHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        37 PHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      |-+=.+.....-.++-. .++.+++.|++|+|||...+.+++-+
T Consensus        15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l   57 (272)
T PF12775_consen   15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSL   57 (272)
T ss_dssp             --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred             CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccC
Confidence            44444555554444444 36889999999999999988877543

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=90.22  E-value=0.27  Score=43.49  Aligned_cols=28  Identities=18%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|++|||||+..+.|.-.+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999998887653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=90.21  E-value=0.28  Score=43.56  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.|.-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (237)
T TIGR00968        24 PTGSLVALLGPSGSGKSTLLRIIAGLE   50 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999888887654

>PRK05642 DNA replication initiation factor; Validated

Probab=90.20  E-value=0.66  Score=41.46  Aligned_cols=26  Identities=12%  Similarity=0.152  Sum_probs=22.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -.+++.|.+|+|||..++.+...+..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~   71 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQ   71 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999988877654

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=90.20  E-value=0.32  Score=42.75  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=23.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.+.+.|.+|||||.+++.+++-+..
T Consensus        24 ~H~~I~G~TGsGKS~~~~~ll~~l~~   49 (229)
T PF01935_consen   24 RHIAIFGTTGSGKSNTVKVLLEELLK   49 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            56889999999999999999999884

It contains several conserved aspartates and histidines that could be metal ligands.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=90.19  E-value=0.39  Score=48.64  Aligned_cols=56  Identities=16%  Similarity=0.303  Sum_probs=38.0

Q ss_pred             HHhhcCcCCCC--CCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         25 CEYHGAKMGSQ--EPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        25 ~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++|+-+...++  ++|+-..-..++   ...+-.++++++|+.|.|||+.++.+.+.|.+.
T Consensus         8 ~k~rP~~f~~viGq~~v~~~L~~~i---~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~   65 (559)
T PRK05563          8 RKWRPQTFEDVVGQEHITKTLKNAI---KQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL   65 (559)
T ss_pred             HHhCCCcHHhccCcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            44555544443  456544333332   234568899999999999999999999987653

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.19  E-value=0.28  Score=43.76  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456889999999999999988887643

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=90.18  E-value=0.23  Score=48.58  Aligned_cols=31  Identities=32%  Similarity=0.394  Sum_probs=27.4

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      -++.|++=+-||||||||+.-..+++-+...
T Consensus       310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~  340 (534)
T COG4172         310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ  340 (534)
T ss_pred             ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence            4678999999999999999999999987654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=90.18  E-value=0.28  Score=42.40  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          24 AAGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999988877654

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.17  E-value=0.26  Score=44.77  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            456889999999999999888776544

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=90.16  E-value=0.25  Score=43.20  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ...++++|++|+|||+..|.|.
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~   46 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIG   46 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHH
Confidence            3789999999999999998884

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=90.13  E-value=0.35  Score=44.45  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=34.7

Q ss_pred             chhHHHHHHHHHhHhc---------CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         38 HVFALAEAAYSSLQNL---------DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        38 HifavA~~Ay~~m~~~---------~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+..+..++++.++..         ++.+.|++.|.+|+|||+++..+..++...
T Consensus        45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~   99 (272)
T TIGR00064        45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQ   99 (272)
T ss_pred             HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            4566677777765432         345789999999999999998888887654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=90.12  E-value=0.28  Score=44.03  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         27 QRGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999888876654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=90.10  E-value=0.26  Score=44.61  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            466889999999999999988877654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=90.10  E-value=0.27  Score=45.11  Aligned_cols=28  Identities=25%  Similarity=0.370  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|++|||||+..+.+.-.+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         31 EQGKYYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999998876643

>PRK13975 thymidylate kinase; Provisional

Probab=90.08  E-value=0.29  Score=41.72  Aligned_cols=25  Identities=32%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-|++.|..|||||+.++.+-+.|-
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998875

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.05  E-value=0.29  Score=44.00  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.-.+
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467889999999999999999887654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=90.04  E-value=0.29  Score=44.35  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         44 EKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467899999999999999988887654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=90.04  E-value=0.29  Score=44.55  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|.+|||||+..+.|...+.
T Consensus        48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         48 HENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4678999999999999999999987653

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.03  E-value=0.48  Score=48.64  Aligned_cols=56  Identities=21%  Similarity=0.290  Sum_probs=40.2

Q ss_pred             HHHHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         23 KVCEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        23 ~~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..++|+-+...++  .+|+-    ..++++...+ -.++++++|+.|.|||+.++.+.+.|.+
T Consensus         6 la~KyRP~sf~dIiGQe~v~----~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C   64 (624)
T PRK14959          6 LTARYRPQTFAEVAGQETVK----AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC   64 (624)
T ss_pred             HHHHhCCCCHHHhcCCHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence            3456766655554  35553    3445555554 4799999999999999999999999865

>PRK06526 transposase; Provisional

Probab=90.03  E-value=0.31  Score=44.41  Aligned_cols=29  Identities=24%  Similarity=0.301  Sum_probs=25.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.+.+++.|.+|+|||..+..+...++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~  125 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQA  125 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence            45679999999999999999998887753

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=90.03  E-value=0.3  Score=43.69  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         28 YENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467889999999999999998887654

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=90.02  E-value=0.55  Score=48.24  Aligned_cols=57  Identities=16%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-....++--|-..+  ..++.+... +-.+++|++|..|.|||+.++.+-+.|-+
T Consensus         7 ~~kyRP~~f~eivGQe~i~--~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954          7 ARKYRPSKFADITAQEHIT--HTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             HHHHCCCCHHHhcCcHHHH--HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3456655544443333222  235555544 67899999999999999999999999865

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=90.01  E-value=0.3  Score=42.71  Aligned_cols=27  Identities=30%  Similarity=0.591  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..+.+.-.+
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888876654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=90.01  E-value=0.29  Score=43.67  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..+.+...
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            35688999999999999998887653

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=90.00  E-value=0.21  Score=50.38  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=25.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...|.|.|.|+||||||+..|.++..+.-
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p  393 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYPL  393 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence            46799999999999999999999887654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=89.99  E-value=0.29  Score=43.92  Aligned_cols=28  Identities=25%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..+.+.-.+-
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         29 NAGDVISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568899999999999999888877643

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=89.98  E-value=0.3  Score=44.10  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.-.+
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999988876554

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=89.98  E-value=0.3  Score=42.78  Aligned_cols=27  Identities=19%  Similarity=0.442  Sum_probs=23.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            567899999999999999988887654

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK07952 DNA replication protein DnaC; Validated

Probab=89.96  E-value=0.61  Score=42.32  Aligned_cols=28  Identities=29%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+.++++|.+|+|||..+..|..+|...
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l~~~  126 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNELLLR  126 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3689999999999999999999998864

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=89.95  E-value=0.3  Score=43.01  Aligned_cols=27  Identities=30%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.|.|++|||||+..+.+...+.
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457899999999999999888876543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=89.95  E-value=0.3  Score=43.31  Aligned_cols=27  Identities=37%  Similarity=0.399  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        26 DPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=89.95  E-value=0.29  Score=43.98  Aligned_cols=27  Identities=19%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            456889999999999999998887754

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=89.95  E-value=0.29  Score=45.32  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|.+|||||+..|.+.-.+
T Consensus        28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        28 ARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988887654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=89.93  E-value=0.22  Score=51.40  Aligned_cols=29  Identities=28%  Similarity=0.556  Sum_probs=25.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...|.+.|.|+||||||+..|.++..+.-
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p  526 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQA  526 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            46799999999999999999999887653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=89.92  E-value=0.29  Score=44.02  Aligned_cols=27  Identities=33%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467889999999999999888877654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=89.91  E-value=0.27  Score=49.44  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=24.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++-..+=+-||||||||+.+|.++..+.-
T Consensus       315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P  343 (539)
T COG1123         315 REGETLGLVGESGSGKSTLARILAGLLPP  343 (539)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45577889999999999999999888654

>TIGR00602 rad24 checkpoint protein rad24

Probab=89.91  E-value=0.5  Score=48.67  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             HHHHhhcCcCCCCCCchhHHH--HHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALA--EAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA--~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++|+-+...++.-|--.+.  ..+...+.. ....+.++++|.+|+|||++++.+.+.+-
T Consensus        74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~  135 (637)
T TIGR00602        74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG  135 (637)
T ss_pred             hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence            566777777777655544433  333333222 23446799999999999999998887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=89.89  E-value=0.72  Score=37.97  Aligned_cols=28  Identities=18%  Similarity=0.309  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +....++.+.+|||||..+-.++..+..
T Consensus        24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~~   51 (184)
T PF04851_consen   24 EERRVLLNAPTGSGKTIIALALILELAR   51 (184)
T ss_dssp             GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence            4677899999999999999877777665

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>cd04163 Era Era subfamily

Probab=89.88  E-value=0.3  Score=39.05  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=18.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ...|++.|.+|||||+....++
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~   24 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALV   24 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999877765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=89.87  E-value=0.33  Score=43.53  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=22.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +....|.|+||||||...+.|.--|.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            45678999999999999888877765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK13768 GTPase; Provisional

Probab=89.87  E-value=0.34  Score=43.93  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .|++.|.+|+|||+.++.+..+|+..
T Consensus         4 ~i~v~G~~G~GKTt~~~~~~~~l~~~   29 (253)
T PRK13768          4 IVFFLGTAGSGKTTLTKALSDWLEEQ   29 (253)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHhc
Confidence            58999999999999999999998764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=89.85  E-value=0.22  Score=50.28  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=25.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ...+.|.|.|+||||||+..|.++..+.-.
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~  388 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ  388 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence            467889999999999999999998886543

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=89.84  E-value=0.26  Score=42.75  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.|++|||||+..+.+.-.+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            78899999999999988887654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=89.83  E-value=0.3  Score=44.42  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         31 PGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999988877654

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=89.83  E-value=0.32  Score=42.07  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|++|||||+..+.+.-.+.
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678999999999999999998877653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=89.83  E-value=0.75  Score=38.75  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=26.9

Q ss_pred             HhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         51 QNLDVNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      ...+-++++++.|.+|+||++.++.+.+.+.....
T Consensus        14 ~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~   48 (162)
T PF13177_consen   14 KSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP   48 (162)
T ss_dssp             HCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred             HcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence            34567899999999999999999999998876543

...

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.82  E-value=0.31  Score=43.49  Aligned_cols=27  Identities=37%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.|...+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         27 FKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456889999999999999999887654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=89.81  E-value=0.21  Score=48.76  Aligned_cols=29  Identities=38%  Similarity=0.462  Sum_probs=25.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .--.+-+-||||||||.++..||+-|..-
T Consensus        35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~   63 (534)
T COG4172          35 AGETLALVGESGSGKSVTALSILGLLPSP   63 (534)
T ss_pred             CCCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence            44678899999999999999999999873

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.81  E-value=0.32  Score=43.51  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.-.+
T Consensus        29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         29 YKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467889999999999999999887654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=89.80  E-value=0.32  Score=42.11  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..+.+.-.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999988877654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=89.79  E-value=0.42  Score=41.24  Aligned_cols=27  Identities=30%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.|++.|--|||||+.-|.+-+.|-.
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~   28 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNL   28 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence            467999999999999999999777653

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=89.78  E-value=0.31  Score=46.32  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+..+++.|++|+|||..++.+.+.+.
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~  181 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETN  181 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            467899999999999999999877653

Many proteins may score above the trusted cutoff because an internal

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=89.78  E-value=0.32  Score=43.17  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.-.+
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         27 NSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=89.77  E-value=0.26  Score=39.55  Aligned_cols=19  Identities=21%  Similarity=0.359  Sum_probs=17.5

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.+.
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            7899999999999988887

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=89.76  E-value=0.3  Score=44.29  Aligned_cols=27  Identities=30%  Similarity=0.343  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..|.|.-.+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888776554

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=89.76  E-value=0.31  Score=43.93  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.|.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         28 HHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999988887654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=89.75  E-value=0.3  Score=44.03  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.|.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888887654

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=89.75  E-value=0.64  Score=46.92  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=38.9

Q ss_pred             HHHhhcCcCCCC--CCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-....++  ++|+-    +.++.++ ..+-.++++++|+.|+|||+.++.+.+.|.+
T Consensus         5 ~~KyRP~~fdeiiGqe~v~----~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c   62 (535)
T PRK08451          5 ALKYRPKHFDELIGQESVS----KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC   62 (535)
T ss_pred             HHHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            456776665554  34442    3333333 4456788999999999999999999999864

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.75  E-value=0.31  Score=43.82  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.|.-.+
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         36 PKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456889999999999999988887654

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=89.74  E-value=0.39  Score=48.96  Aligned_cols=54  Identities=26%  Similarity=0.367  Sum_probs=37.3

Q ss_pred             HHhhcCcCCCCC--CchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         25 CEYHGAKMGSQE--PHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        25 ~~y~~~~~~~~p--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++|+-+...++-  .|+-..    ++.++. .+-+++++++|..|.|||+.++.+.+.|-+
T Consensus         5 ~kyRP~~f~eivGq~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952          5 RKYRPATFAEVVGQEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             HHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456655544442  444333    444444 456788999999999999999999988764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=89.72  E-value=0.32  Score=44.10  Aligned_cols=36  Identities=22%  Similarity=0.198  Sum_probs=28.0

Q ss_pred             HHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         48 SSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.+-.-...+.+.+.|++|||||+..|.+.-.+...
T Consensus        18 ~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~   53 (255)
T cd03236          18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPN   53 (255)
T ss_pred             hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence            334323567899999999999999999988886543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK05439 pantothenate kinase; Provisional

Probab=89.70  E-value=0.58  Score=44.05  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +..--|-|+|.+|||||+.++.+...|...
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~  113 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRW  113 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            455678899999999999999988877543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=89.68  E-value=0.34  Score=40.00  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ...+.+.|.|.+|||||+..+.+.-
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g   47 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAG   47 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3568899999999999998777643

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=89.68  E-value=0.31  Score=46.33  Aligned_cols=27  Identities=33%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.|.-.+
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~   48 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLT   48 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888776543

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.66  E-value=0.32  Score=44.35  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         44 PAKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            456889999999999999988887553

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=89.66  E-value=0.25  Score=49.67  Aligned_cols=30  Identities=27%  Similarity=0.470  Sum_probs=26.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ...+.+-+.|+||||||+..+.+++++-..
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~  382 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPT  382 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            467888899999999999999999997753

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=89.65  E-value=0.42  Score=41.33  Aligned_cols=28  Identities=21%  Similarity=0.245  Sum_probs=23.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.+.+.+.|++|+|||..+..+....+.
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~   38 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAAR   38 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5688999999999999998776666554

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03112 CobW_like The function of this protein family is unkown

Probab=89.65  E-value=0.27  Score=41.17  Aligned_cols=23  Identities=39%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -++++|.+|||||+..+.+++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~~   24 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTEQ   24 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhcc
Confidence            37899999999999999888763

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=89.64  E-value=0.63  Score=47.78  Aligned_cols=55  Identities=18%  Similarity=0.347  Sum_probs=39.5

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++-  .|+-    +..+++... +-.++++++|..|.|||+.++.+.+.|-+
T Consensus         7 a~KyRP~~f~dviGQe~vv----~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951          7 ARKYRPRSFSEMVGQEHVV----QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HHHHCCCCHHHhcCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4567766555543  4433    355555544 45688999999999999999999999865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=89.64  E-value=0.33  Score=42.72  Aligned_cols=27  Identities=22%  Similarity=0.518  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|.+|||||+..+.+.-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467889999999999999888776554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=89.64  E-value=0.37  Score=49.72  Aligned_cols=55  Identities=16%  Similarity=0.329  Sum_probs=38.5

Q ss_pred             HHHhhcCcCCCC--CCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++  ..|+-.    .+++++ ..+-.++++|+|..|.|||+.++.+.+.|-+
T Consensus         7 arKYRPqtFddVIGQe~vv~----~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323          7 ARKWRPRDFTTLVGQEHVVR----ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             HHHhCCCcHHHHcCcHHHHH----HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            456665554443  344443    344444 3456788999999999999999999999875

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=89.64  E-value=0.33  Score=44.00  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.|.-.+
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         43 PEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467889999999999999999888654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=89.63  E-value=0.32  Score=45.02  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|.+|||||+..|.+.-.+.
T Consensus        17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        17 REGEVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568899999999999999888876653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.63  E-value=0.33  Score=43.43  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..+.+.--+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467889999999999999888877654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=89.63  E-value=0.33  Score=39.92  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=21.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.+.|++|||||+..+.+...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            45688899999999999987776544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=89.62  E-value=0.57  Score=43.83  Aligned_cols=28  Identities=21%  Similarity=0.359  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .....++++|.+|+|||+.++.+.+.+.
T Consensus        49 ~~~~~~ll~GppG~GKT~la~~ia~~l~   76 (328)
T PRK00080         49 EALDHVLLYGPPGLGKTTLANIIANEMG   76 (328)
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence            3457899999999999999999888764

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=89.60  E-value=0.66  Score=47.15  Aligned_cols=54  Identities=20%  Similarity=0.326  Sum_probs=38.1

Q ss_pred             HHhhcCcCCCCC--CchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         25 CEYHGAKMGSQE--PHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        25 ~~y~~~~~~~~p--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++|+-+...++-  .|+-    +.++.... ++-.++++++|+.|.|||+.++.+.+.|.+
T Consensus         8 ~k~RP~~f~~iiGq~~v~----~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c   64 (576)
T PRK14965          8 RKYRPQTFSDLTGQEHVS----RTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC   64 (576)
T ss_pred             HHhCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence            456655555543  4443    34444443 456788999999999999999999999864

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.56  E-value=0.33  Score=44.14  Aligned_cols=27  Identities=19%  Similarity=0.275  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         37 PRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467889999999999999998887653

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=89.54  E-value=0.71  Score=44.48  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..+++.|.+|+|||..++.+.+.+...
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~  163 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILEN  163 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence            468999999999999999999988754

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.52  E-value=0.32  Score=44.33  Aligned_cols=27  Identities=15%  Similarity=0.297  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.-.+
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.52  E-value=0.34  Score=43.66  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..|.+.-.+
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         31 YRNKVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            457889999999999999999888764

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=89.52  E-value=0.37  Score=42.09  Aligned_cols=48  Identities=17%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHh-----HHHHHHhcCC
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEA-----NTILEAFGNA  108 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~~~~i~~a-----~~ILeaFGnA  108 (276)
                      |.++|.+|||||+.++.+-+. -.. .-..+.+...+.+-     ..|.+.||..
T Consensus         2 i~itG~~gsGKst~~~~l~~~-g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~   54 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEEL-GAF-GISADRLAKRYTEPDSPILSELVSLLGPS   54 (196)
T ss_pred             EEEECCCCccHHHHHHHHHHC-CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence            789999999999999876543 110 00123444444432     2366777764

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=89.51  E-value=0.5  Score=49.06  Aligned_cols=55  Identities=16%  Similarity=0.311  Sum_probs=37.8

Q ss_pred             HHHhhcCcCCCCC--CchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++-  .|+-.    .++.++. .+-.+++|++|..|.|||+.++.+.+.|-+
T Consensus         7 arKYRP~tFddIIGQe~vv~----~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC   64 (709)
T PRK08691          7 ARKWRPKTFADLVGQEHVVK----ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC   64 (709)
T ss_pred             HHHhCCCCHHHHcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            4566655544442  34432    4444444 445789999999999999999999998754

>CHL00181 cbbX CbbX; Provisional

Probab=89.50  E-value=0.36  Score=44.70  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=23.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .|++.|.+|+|||+.++.+.+.+...
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~~~~   86 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADILYKL   86 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            48999999999999999999987654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.50  E-value=0.34  Score=43.89  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         32 RKNEITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            467899999999999999998886654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=89.49  E-value=0.34  Score=42.68  Aligned_cols=28  Identities=21%  Similarity=0.509  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|.+|||||+..+.+.-.+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          25 PAGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678899999999999999888876543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=89.47  E-value=0.5  Score=48.35  Aligned_cols=42  Identities=29%  Similarity=0.297  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         40 FALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        40 favA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |-++-+|-+-+.... ..-.|-|.|.||||||+.++.|...+.
T Consensus        48 ~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         48 FFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             hhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence            444555544444332 335677899999999999999998863

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=89.44  E-value=0.3  Score=42.70  Aligned_cols=23  Identities=26%  Similarity=0.549  Sum_probs=19.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      ..-.|+++.|.||||||+..|.+
T Consensus        35 ~aGECvvL~G~SG~GKStllr~L   57 (235)
T COG4778          35 NAGECVVLHGPSGSGKSTLLRSL   57 (235)
T ss_pred             cCccEEEeeCCCCCcHHHHHHHH
Confidence            34579999999999999987754

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=89.43  E-value=0.33  Score=43.31  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|++|||||+..+.+.-.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         31 NKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            46788999999999999998877653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=89.43  E-value=0.29  Score=42.66  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .--.|.|+|.||+|||+..|.+..-.
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhcc
Confidence            44679999999999999887765543

>cd01394 radB RadB

Probab=89.36  E-value=0.44  Score=41.52  Aligned_cols=37  Identities=16%  Similarity=0.124  Sum_probs=27.9

Q ss_pred             HHHhHhcC--CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         47 YSSLQNLD--VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        47 y~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +..|+..+  +...++++|++|+|||..+..+...++..
T Consensus         8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~   46 (218)
T cd01394           8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ   46 (218)
T ss_pred             HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            44455433  46778999999999999998888776643

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=89.34  E-value=0.39  Score=42.04  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .--|+++|-||+|||+.++.+.+.+
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3468999999999999999888875

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=89.31  E-value=0.35  Score=43.74  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..+.|.-.+
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999888877654

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=89.31  E-value=0.32  Score=43.61  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~   46 (248)
T PRK03695         20 RAGEILHLVGPNGAGKSTLLARMAGLL   46 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            456889999999999999988877654

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=89.30  E-value=0.36  Score=43.68  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         34 PKNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            467899999999999999999887643

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.30  E-value=0.36  Score=43.04  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..|.+.-.+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         28 QRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467889999999999999988877654

>PRK07429 phosphoribulokinase; Provisional

Probab=89.30  E-value=0.32  Score=46.04  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .=-|-|+|.||||||+.++.+.+.|-
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhc
Confidence            34677899999999999999988874

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=89.30  E-value=0.34  Score=46.17  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.|.-.+
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~   52 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLE   52 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356899999999999999888877654

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=89.28  E-value=0.36  Score=42.99  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         27 PARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            456899999999999999988887653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=89.26  E-value=0.56  Score=49.24  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=38.8

Q ss_pred             HHHhhcCcCCCC--CCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++  ..|+-    +.+++++.. +-.+.+||+|..|.|||+.++.+.+.|-+
T Consensus         7 arKYRPqtFdEVIGQe~Vv----~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003          7 ARKWRPKDFASLVGQEHVV----RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             HHHhCCCcHHHHcCcHHHH----HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            456766655444  23443    345555554 45889999999999999999999998864

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=89.26  E-value=0.33  Score=43.15  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...+.+.|.|.+|||||+..+.+.-.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         25 RPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            45688999999999999988877665

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=89.25  E-value=0.33  Score=43.88  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.|.--+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   57 (265)
T PRK10253         31 PDGHFTAIIGPNGCGKSTLLRTLSRLM   57 (265)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999887766543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=89.24  E-value=0.35  Score=43.81  Aligned_cols=27  Identities=30%  Similarity=0.501  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..+.+.-.+
T Consensus        37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~   63 (267)
T PRK15112         37 REGQTLAIIGENGSGKSTLAKMLAGMI   63 (267)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            467889999999999999888877654

>PRK14526 adenylate kinase; Provisional

Probab=89.24  E-value=0.35  Score=42.75  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |++.|.+|||||+.++.+.+.+
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999988764

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=89.23  E-value=0.47  Score=42.51  Aligned_cols=29  Identities=21%  Similarity=0.281  Sum_probs=25.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .=+|++.|-++.|||..++.|.+||..++
T Consensus        12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g   40 (222)
T PF01591_consen   12 KLVIVMVGLPARGKSYIARKLCRYLNWLG   40 (222)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            45789999999999999999999998764

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=89.21  E-value=0.36  Score=41.15  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |++.|-.|||||+.++.+-+++
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~   23 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHL   23 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998875

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=89.21  E-value=0.35  Score=44.21  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.|.-.+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999998887654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=89.18  E-value=0.25  Score=49.04  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=24.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|+||||||+..|.++..+-
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  373 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVD  373 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999988754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=89.18  E-value=0.28  Score=46.66  Aligned_cols=20  Identities=35%  Similarity=0.589  Sum_probs=16.9

Q ss_pred             ceEEEeCCCCCChhHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~i   76 (276)
                      --+++.|.||+|||+..+.|
T Consensus        30 ef~vllGPSGcGKSTlLr~I   49 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMI   49 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999986654

>KOG0056|consensus

Probab=89.16  E-value=0.36  Score=48.32  Aligned_cols=32  Identities=19%  Similarity=0.473  Sum_probs=27.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      ...|.|-+-|+||+|||+.++.+++++-..++
T Consensus       562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sG  593 (790)
T KOG0056|consen  562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG  593 (790)
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhhccCc
Confidence            34599999999999999999999999765544

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=89.16  E-value=0.63  Score=47.57  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=38.9

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .++|+-+...++--|-..  -+.+++++ .++-.++++++|.+|.|||++++.+.+.|-+.
T Consensus        15 a~KyRP~~f~dliGq~~~--v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~   73 (598)
T PRK09111         15 ARKYRPQTFDDLIGQEAM--VRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE   73 (598)
T ss_pred             HhhhCCCCHHHhcCcHHH--HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence            456665554444322211  13344444 34568999999999999999999999998653

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.16  E-value=0.35  Score=44.06  Aligned_cols=27  Identities=22%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|.+|||||+..|.+.-.+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         26 EKGEMVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999998887654

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=89.12  E-value=0.44  Score=43.28  Aligned_cols=28  Identities=21%  Similarity=0.141  Sum_probs=22.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +...++++|++|+|||..+.+++...+.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~   62 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQAS   62 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5678999999999999988776666554

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=89.08  E-value=0.63  Score=43.91  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=32.0

Q ss_pred             HHHHHhH--hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         45 AAYSSLQ--NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        45 ~Ay~~m~--~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+|+.+.  ..+-.++++++|.+|.|||..++.+-+.|.+.
T Consensus         8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~   48 (325)
T PRK08699          8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE   48 (325)
T ss_pred             HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence            4556555  35778999999999999999999999998653

>TIGR00152 dephospho-CoA kinase

Probab=89.05  E-value=0.5  Score=40.42  Aligned_cols=46  Identities=22%  Similarity=0.491  Sum_probs=29.2

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH-HhhccCCcchHHHHHHHh-----HHHHHHhc
Q psy17386         59 CVISGESGAGKTETTKFILQYL-CSVTSNVSTWVEQQILEA-----NTILEAFG  106 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL-~~~~~~~~~~~~~~i~~a-----~~ILeaFG  106 (276)
                      |.++|-.|||||+.++.+-+.. +.+-.  ...+..++..-     ..|.+.||
T Consensus         2 i~itG~~gsGKst~~~~l~~~~~~~~i~--~D~~~~~~~~~~~~~~~~i~~~fg   53 (188)
T TIGR00152         2 IGLTGGIGSGKSTVANYLADKYHFPVID--ADKIAHQVVEKGSPAYEKIVDHFG   53 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCeEEe--CCHHHHHHHhcCChHHHHHHHHHC
Confidence            7899999999999998777653 22111  23344444432     23677787

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=89.01  E-value=0.37  Score=44.67  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+...+.|++|||||+..|.++-.+..
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p   57 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP   57 (293)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            34578899999999999999988877654

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=89.00  E-value=0.44  Score=43.96  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=24.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .|.|.|.+|||||+.+..++..|...+
T Consensus         3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G   29 (274)
T PRK14493          3 VLSIVGYKATGKTTLVERLVDRLSGRG   29 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            588999999999999999999998754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=89.00  E-value=0.37  Score=45.23  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=24.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..+.+.-.+.
T Consensus        50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~   77 (320)
T PRK13631         50 EKNKIYFIIGNSGSGKSTLVTHFNGLIK   77 (320)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5679999999999999999888876653

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=89.00  E-value=0.36  Score=41.14  Aligned_cols=20  Identities=25%  Similarity=0.518  Sum_probs=18.6

Q ss_pred             EEEeCCCCCChhHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~   78 (276)
                      |.++|.+|||||+.++.+.+
T Consensus         2 i~itG~~gsGKst~~~~l~~   21 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE   21 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999887

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PTZ00088 adenylate kinase 1; Provisional

Probab=88.99  E-value=0.38  Score=43.16  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..|++.|.+|||||+.++.+-+.+-
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		1e-50
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		1e-16
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		1e-50
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		1e-16
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-50
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-16
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		1e-50
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		1e-16
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		1e-50
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		9e-17
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		1e-50
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		9e-17
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		1e-50
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-17
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-50
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-16
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		2e-50
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		9e-17
2y0r_X	758	Structural Basis For The Allosteric Interference Of		2e-50
2y0r_X	758	Structural Basis For The Allosteric Interference Of		1e-16
2y9e_X	758	Structural Basis For The Allosteric Interference Of		2e-50
2y9e_X	758	Structural Basis For The Allosteric Interference Of		1e-16
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		2e-50
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		1e-16
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-50
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		2e-17
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-50
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-16
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-50
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-16
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-50
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		2e-16
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		2e-50
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		1e-16
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		2e-50
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		1e-16
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		2e-50
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		3e-16
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		2e-50
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		3e-17
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		3e-50
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		1e-16
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		4e-50
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		3e-16
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		6e-50
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		3e-16
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		1e-49
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		1e-16
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		1e-48
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		9e-17
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		2e-48
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		2e-16
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		3e-48
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		2e-16
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		5e-47
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		1e-16
1b7t_A	835	Myosin Digested By Papain Length = 835		3e-45
1b7t_A	835	Myosin Digested By Papain Length = 835		1e-16
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		4e-45
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		1e-16
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		4e-45
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		1e-16
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		4e-45
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		1e-16
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		4e-45
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		1e-16
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		5e-45
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		1e-16
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		7e-45
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		2e-13
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		7e-45
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		3e-13
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		8e-45
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		3e-13
2x51_A	789	M6 Delta Insert1 Length = 789		8e-45
2x51_A	789	M6 Delta Insert1 Length = 789		3e-13
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		9e-45
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		3e-13
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		9e-45
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		3e-13
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		9e-45
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		2e-13
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		1e-44
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		2e-13
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		1e-44
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		2e-13
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		3e-44
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		2e-13
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		4e-44
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		2e-13
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		4e-44
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		3e-13
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		7e-43
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		9e-17
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		9e-43
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		1e-16
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		2e-41
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		5e-11
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		2e-41
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		5e-11
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		3e-41
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		5e-17
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		8e-41
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		9e-16
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		8e-41
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		8e-16
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		8e-41
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		5e-16
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		9e-41
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		5e-16
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		1e-40
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		7e-16
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		5e-40
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		3e-17
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		2e-39
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		2e-15
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		3e-38
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		5e-16
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		4e-38
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		5e-16

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCE---ERKAYFIGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDIEGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 187
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 247
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 248 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 304
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 305 KALHLAGPE 313

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 440 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 496
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 497 MFKLEQE 503

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTSERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C+   +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCS---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F +EQE
Sbjct: 486 MFKVEQE 492

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 187
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 247
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 248 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 304
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 305 KALHLAGPE 313

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 440 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 496
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 497 MFKLEQE 503

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 187
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 247
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 248 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 304
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 305 KALHLAGPE 313

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 440 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 496
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 497 MFKLEQE 503

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI+GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 187
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 188 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 247
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 248 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 304
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 305 KALHLAGPE 313

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 440 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 496
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 497 MFKLEQE 503

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 235
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 236 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 292
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 293 KALHLAGPE 301

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 428 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 484
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 485 MFKLEQE 491

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 235
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 236 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 292
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 293 KALHLAGPE 301

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 428 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 484
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 485 MFKLEQE 491

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 235
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 236 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 292
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 293 KALHLAGPE 301

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 428 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 484
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 485 MFKLEQE 491

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI+GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C+   +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCS---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F +EQE
Sbjct: 486 MFKVEQE 492

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSTTERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C+   +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCS---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F +EQE
Sbjct: 486 MFKVEQE 492

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C+   + +  F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCS---ERAAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F +EQE
Sbjct: 486 MFKVEQE 492

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F +EQE
Sbjct: 486 MFKVEQE 492

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 235
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 236 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 292
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 293 KALHLAGPE 301

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI+GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 428 LFLWLVKKINNVLCQ---ERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHH 484
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 485 MFKLEQE 491

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+N+
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNA 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 486 MFKLEQE 492

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 116 TYSGLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 235
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 236 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 292
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 293 KALHLAGPE 301

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 428 LFLWLVIKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 484
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 485 MFKLEQE 491

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score =  194 bits (492), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 116 TYSGLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 176 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 235
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 236 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 292
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 293 KALHLAGPE 301

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 48/67 (71%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C    +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 428 LFLWLVIKINNVLCQ---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 484
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 485 MFKLEQE 491

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 129/189 (68%), Gaps = 7/189 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           S FGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 237 SEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 293
Query: 177 EIMHYTSEE 185
           + +H    E
Sbjct: 294 KALHLAGPE 302

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Query: 192 VFAWLVNHINT--CTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  IN   C+   +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH+
Sbjct: 429 LFLWLVKKINNVLCS---ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHH 485
Query: 250 VFALEQE 256
           +F +EQE
Sbjct: 486 MFKVEQE 492

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 141/230 (61%), Gaps = 9/230 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-VEQQILEANTILEAFGNAKTVRNDNSSRF 119
           +SGESGAGKT + K+ ++Y  +V+ + S   VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSI----- 174
           GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A           
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLG 280
Query: 175 NKEIMHYTSEEKSHVIWVF---AWLVNHINTCTNPGQDSTRFLGVLDIFG 221
           N    HYT +  S VI        +VN    CT  G   +  +G+  I  
Sbjct: 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILA 330

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V+H+N   +       F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF
Sbjct: 411 LFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVF 470
Query: 252 ALEQE 256
            LEQE
Sbjct: 471 KLEQE 475

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 141/230 (61%), Gaps = 9/230 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-VEQQILEANTILEAFGNAKTVRNDNSSRF 119
           +SGESGAGKT + K+ ++Y  +V+ + S   VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSI----- 174
           GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A           
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLG 280
Query: 175 NKEIMHYTSEEKSHVIWVF---AWLVNHINTCTNPGQDSTRFLGVLDIFG 221
           N    HYT +  S VI        +VN    CT  G   +  +G+  I  
Sbjct: 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILA 330

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V+H+N   +       F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF
Sbjct: 411 LFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVF 470
Query: 252 ALEQE 256
            LEQE
Sbjct: 471 KLEQE 475

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 141/230 (61%), Gaps = 9/230 (3%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-VEQQILEANTILEAFGNAKTVRNDNSSRF 119
           +SGESGAGKT + K+ ++Y  +V+ + S   VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSI----- 174
           GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A           
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLG 280
Query: 175 NKEIMHYTSEEKSHVIWVF---AWLVNHINTCTNPGQDSTRFLGVLDIFG 221
           N    HYT +  S VI        +VN    CT  G   +  +G+  I  
Sbjct: 281 NANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILA 330

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V+H+N   +       F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF
Sbjct: 411 LFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVF 470
Query: 252 ALEQE 256
            LEQE
Sbjct: 471 KLEQE 475

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score =  184 bits (467), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 122/180 (67%), Gaps = 12/180 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNV------------STWVEQQILEANTILEAFGNA 108
           I+GESGAGKTE+TK ++ Y   V +N+            ++ +E QI+EAN +LEAFGNA
Sbjct: 174 ITGESGAGKTESTKKVIMYFARVAANLYKQKEEPVPNLRASNLEDQIIEANPVLEAFGNA 233
Query: 109 KTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           KTVRN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 234 KTVRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 293

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 435 MFNWLVKRVNRTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 494
Query: 252 ALEQE 256
            LEQE
Sbjct: 495 VLEQE 499

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-----------VEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V   V              +E QI++AN +LEA+GNAK
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 233
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 234 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 434 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 493
Query: 252 ALEQE 256
            LEQE
Sbjct: 494 ILEQE 498

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-----------VEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V   V              +E QI++AN +LEA+GNAK
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 233
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 234 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 434 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 493
Query: 252 ALEQE 256
            LEQE
Sbjct: 494 ILEQE 498

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-----------VEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V   V              +E QI++AN +LEA+GNAK
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 233
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 234 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 434 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 493
Query: 252 ALEQE 256
            LEQE
Sbjct: 494 ILEQE 498

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 109 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 168
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-----------VEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V   V              +E QI++AN +LEA+GNAK
Sbjct: 169 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 228
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 229 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 287

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 429 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 488
Query: 252 ALEQE 256
            LEQE
Sbjct: 489 ILEQE 493

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 110 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 169
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW-----------VEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V   V              +E QI++AN +LEA+GNAK
Sbjct: 170 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 229
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 230 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 288

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 430 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 489
Query: 252 ALEQE 256
            LEQE
Sbjct: 490 ILEQE 494

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 119/181 (65%), Gaps = 13/181 (7%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173
Query: 61  ISGESGAGKTETTKFILQYL----CSVTSNVSTW---------VEQQILEANTILEAFGN 107
           I+GESGAGKTE TK ++ YL    C+V    S           +E QI++AN +LEA+GN
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKTSEEEEADQKKGSLEDQIIQANPVLEAYGN 233
Query: 108 AKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEA 167
           AKT RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   
Sbjct: 234 AKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSN 293
Query: 168 A 168
           A
Sbjct: 294 A 294

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 436 MFNWLVKRVNRTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 495
Query: 252 ALEQE 256
            LEQE
Sbjct: 496 VLEQE 500

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 97  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 156
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 157 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 215
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 216 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 272
Query: 180 HYTSEE 185
           H +S +
Sbjct: 273 HLSSPD 278

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 440 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 498
Query: 252 ALEQEI 257
             EQE+
Sbjct: 499 KEEQEL 504

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 84  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 143
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 144 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 202
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 203 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 259
Query: 180 HYTSEE 185
           H +S +
Sbjct: 260 HLSSPD 265

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 427 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 485
Query: 252 ALEQEI 257
             EQE+
Sbjct: 486 KEEQEL 491

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 97  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 156
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 157 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 215
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 216 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 272
Query: 180 HYTSEE 185
           H +S +
Sbjct: 273 HLSSPD 278

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 440 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 498
Query: 252 ALEQEI 257
             EQE+
Sbjct: 499 KEEQEL 504

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score =  177 bits (448), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 88  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 147
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 148 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 206
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 207 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 263
Query: 180 HYTSEE 185
           H +S +
Sbjct: 264 HLSSPD 269

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 405 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 463
Query: 252 ALEQEI 257
             EQE+
Sbjct: 464 KEEQEL 469

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 87  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 146
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 147 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 205
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 206 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 262
Query: 180 HYTSEE 185
           H +S +
Sbjct: 263 HLSSPD 268

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 404 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 462
Query: 252 ALEQEI 257
             EQE+
Sbjct: 463 KEEQEL 468

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 88  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 147
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 148 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 206
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 207 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 263
Query: 180 HYTSEE 185
           H +S +
Sbjct: 264 HLSSPD 269

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 431 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 489
Query: 252 ALEQEI 257
             EQE+
Sbjct: 490 KEEQEL 495

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score =  176 bits (447), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 87  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 146
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 147 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 205
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 206 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 262
Query: 180 HYTSEE 185
           H +S +
Sbjct: 263 HLSSPD 268

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 430 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 488
Query: 252 ALEQEI 257
             EQE+
Sbjct: 489 KEEQEL 494

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 88  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 147
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 148 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 206
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 207 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 263
Query: 180 HYTSEE 185
           H +S +
Sbjct: 264 HLSSPD 269

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 431 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 489
Query: 252 ALEQEI 257
             EQE+
Sbjct: 490 KEEQEL 495

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 87  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 146
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 147 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 205
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 206 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 262
Query: 180 HYTSEE 185
           H +S +
Sbjct: 263 HLSSPD 268

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 430 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 488
Query: 252 ALEQEI 257
             EQE+
Sbjct: 489 KEEQEL 494

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 126/186 (67%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 85  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 144
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      +  +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 145 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRF 203
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 204 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 260
Query: 180 HYTSEE 185
           H +S +
Sbjct: 261 HLSSPD 266

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 428 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 486
Query: 252 ALEQEI 257
             EQE+
Sbjct: 487 KEEQEL 492

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 126/186 (67%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 87  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 146
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      +  +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 147 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRF 205
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 206 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 262
Query: 180 HYTSEE 185
           H +S +
Sbjct: 263 HLSSPD 268

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 430 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 488
Query: 252 ALEQEI 257
             EQE+
Sbjct: 489 KEEQEL 494

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score =  174 bits (442), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 126/186 (67%), Gaps = 5/186 (2%)
Query: 1   TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 87  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 146
Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL   +      +  +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 147 IVSGESGAGKTENTKFVLRYLTE-SYGTGQDIYDRIVEANPLLEAFGNAKTVRNNNSSRF 205
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A  S  I +E +
Sbjct: 206 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA--SEDI-RERL 262
Query: 180 HYTSEE 185
           H +S +
Sbjct: 263 HLSSPD 268

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  + 
Sbjct: 404 LFDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 462
Query: 252 ALEQEI 257
             EQE+
Sbjct: 463 KEEQEL 468

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score =  170 bits (431), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 118/184 (64%), Gaps = 16/184 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +A+NPY+ L IYTQ  V +Y G +     PH+F++A+ AY  +     NQS +
Sbjct: 114 TYSGLFCIAINPYRRLPIYTQGLVDKYRGKRRAEMPPHLFSIADNAYQYMLQDRENQSML 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW----------------VEQQILEANTILEA 104
           I+GESGAGKTE TK ++QY   V ++++                  +E QI++ N +LEA
Sbjct: 174 ITGESGAGKTENTKKVIQYFALVAASLAGKKDKKEEEKKKDEKKGTLEDQIVQCNPVLEA 233
Query: 105 FGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQL 164
           +GNAKT RN+NSSRFGKF+++ F  +  I G  I+ YLLE+SR+T+Q   ERNYH+FYQL
Sbjct: 234 YGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQL 293
Query: 165 VEAA 168
           +  A
Sbjct: 294 LSPA 297

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV  +N   +       F+GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F
Sbjct: 437 MFNWLVRRVNQTLDTKAKRQFFIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMF 496
Query: 252 ALEQE 256
            LEQE
Sbjct: 497 VLEQE 501

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score =  170 bits (430), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 140/233 (60%), Gaps = 22/233 (9%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IYT++ V  Y G K     PHV+A+ E AY S+     +QS +
Sbjct: 91  TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSIL 150
Query: 61  ISGESGAGKTETTKFILQYLCSVTSN--------VSTWVEQQILEANTILEAFGNAKTVR 112
            +GESGAGKTE TK ++QYL  V S+        V   +E+Q+L+AN ILEAFGNAKTV+
Sbjct: 151 CTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVK 210
Query: 113 NDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSS 172
           NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  E ++H+FYQL+  A    
Sbjct: 211 NDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGA--GE 268
Query: 173 SINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRF---LGVLDIFGF 222
            +  +++    E  SH    + +L N     ++PGQ+   F   L  L + GF
Sbjct: 269 QLKADLLL---EPCSH----YRFLTN--GPSSSPGQERELFQETLESLRVLGF 312

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Query: 192 VFAWLVNHINTCTN--PGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
           +F WLV  +N   +  P Q ++ FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH 
Sbjct: 406 LFRWLVLRLNRALDRSPRQGAS-FLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHT 464
Query: 250 VFALEQE 256
           +F LEQE
Sbjct: 465 MFVLEQE 471

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 3/174 (1%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G ++++ NP+K L+IY +S +  Y+G       PH++ALA  AY S++    NQ  +
Sbjct: 39  TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVI 98
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVST---WVEQQILEANTILEAFGNAKTVRNDNSS 117
           ISGESGAGKTE +K I+Q+L  V+SN S     + + +L++N +LEAFGNAKT+RNDNSS
Sbjct: 99  ISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSS 158
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYS 171
           RFGK+M++ F+      G  I +YLLE+SR+  ++ GER++H+FYQ+++    S
Sbjct: 159 RFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQS 212

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV+ INT  N   +    +G+LDI+GFE F  NSFEQL IN+ NEKL + F     
Sbjct: 360 LFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTL 419
Query: 252 ALEQE 256
             EQE
Sbjct: 420 KSEQE 424

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score =  165 bits (418), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/174 (45%), Positives = 120/174 (68%), Gaps = 3/174 (1%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G ++++ NP+K L+IY +S +  Y+G       PH++ALA  AY S++    NQ  +
Sbjct: 39  TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVI 98
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVST---WVEQQILEANTILEAFGNAKTVRNDNSS 117
           ISGESGAGKTE +K I+Q+L  V+SN S     + + +L++N +LEAFGNAKT+RNDNSS
Sbjct: 99  ISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSS 158
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYS 171
           RFGK+M++ F+      G  I +YLLE+SR+  ++ GER++H+FYQ+++    S
Sbjct: 159 RFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQS 212

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F WLV+ INT  N   +    +G+LDI+GFE F  NSFEQL IN+ NEKL + F     
Sbjct: 360 LFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTL 419
Query: 252 ALEQE 256
             EQE
Sbjct: 420 KSEQE 424

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---------------VEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNP-GQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W++  +N   +   +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +
Sbjct: 437 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTM 496
Query: 251 FALEQE 256
           F LEQE
Sbjct: 497 FILEQE 502

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---------------VEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNP-GQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W++  +N   +   +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +
Sbjct: 437 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTM 496
Query: 251 FALEQE 256
           F LEQE
Sbjct: 497 FILEQE 502

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score =  163 bits (413), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---------------VEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNP-GQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W++  +N   +   +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +
Sbjct: 437 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTM 496
Query: 251 FALEQE 256
           F LEQE
Sbjct: 497 FILEQE 502

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---------------VEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNP-GQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W++  +N   +   +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +
Sbjct: 437 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTM 496
Query: 251 FALEQE 256
           F LEQE
Sbjct: 497 FILEQE 502

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVSTW---------------VEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNP-GQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W++  +N   +   +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +
Sbjct: 437 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTM 496
Query: 251 FALEQE 256
           F LEQE
Sbjct: 497 FILEQE 502

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/175 (46%), Positives = 108/175 (61%), Gaps = 10/175 (5%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V VNPYK L +YT   V  Y G K     PH+F++++ AY  +     NQS +
Sbjct: 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSIL 175
Query: 61  ISGESGAGKTETTKFILQYLCSVT----------SNVSTWVEQQILEANTILEAFGNAKT 110
           I+GESGAGKT  TK ++QY   +           S     +E QI++AN  LEAFGNAKT
Sbjct: 176 ITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKT 235
Query: 111 VRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           VRNDNSSRFGKF+++ F     +    I+ YLLE+SR+ FQ   ER+YH+FYQ++
Sbjct: 236 VRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQIL 290

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V  IN      Q    F+GVLDI GFE F  NSFEQLCIN+TNEKL +FFNH++F
Sbjct: 435 MFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMF 494
Query: 252 ALEQE 256
            LEQE
Sbjct: 495 VLEQE 499

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVST---------------WVEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
           +F W++  +N   +  +     FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +
Sbjct: 437 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTM 496
Query: 251 FALEQE 256
           F LEQE
Sbjct: 497 FILEQE 502

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 107/176 (60%), Gaps = 11/176 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V VNPY  L +Y    V  Y G K     PH+F++++ AY  +     NQS +
Sbjct: 114 TYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSIL 173
Query: 61  ISGESGAGKTETTKFILQYLCSVTSN-----------VSTWVEQQILEANTILEAFGNAK 109
           I+GESGAGKT  T  ++QY  ++ ++           +   +E QI+ AN +LEAFGNA 
Sbjct: 174 ITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAX 233
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           TVRNDNSSRFG F+++ F     +    I+ YLLE SR+TFQ P ER+YH+FYQ++
Sbjct: 234 TVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAERSYHIFYQIM 289

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V  IN   +  Q    F+GVLDI GFE F  NSFEQLCIN+TNE L +FFNH++F
Sbjct: 434 MFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMF 493
Query: 252 ALEQE 256
            LEQE
Sbjct: 494 VLEQE 498

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 107/176 (60%), Gaps = 11/176 (6%)
Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V VNPY  L +Y    V  Y G K     PH+F++++ AY  +     NQS +
Sbjct: 117 TYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSIL 176
Query: 61  ISGESGAGKTETTKFILQYLCSVTSN-----------VSTWVEQQILEANTILEAFGNAK 109
           I+GESGAGKT  T  ++QY  ++ ++           +   +E QI+ AN +LEAFGNA 
Sbjct: 177 ITGESGAGKTVNTXRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAX 236
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           TVRNDNSSRFG F+++ F     +    I+ YLLE SR+TFQ P ER+YH+FYQ++
Sbjct: 237 TVRNDNSSRFGXFIRIHFGATGKLASADIETYLLEXSRVTFQLPAERSYHIFYQIM 292

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           +F W+V  IN   +  Q    F+GVLDI GFE F  NSFEQLCIN+TNE L +FFNH++F
Sbjct: 437 MFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEXLQQFFNHHMF 496
Query: 252 ALEQE 256
            LEQE
Sbjct: 497 VLEQE 501

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	4e-98
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	5e-35
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	1e-97
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	1e-33
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	8e-96
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-34
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	2e-94
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	2e-31
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-92
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-32
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	4e-92
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	3e-31
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	1e-89
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	4e-33
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	4e-89
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	2e-33
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-87
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-36
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-78
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score =  303 bits (779), Expect = 4e-98
 Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160

Query: 61  ISGESGAGKTETTKFILQYLCSVT-SNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           +SGESGAGKT + K+ ++Y  +V+ S     VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220

Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASA 269

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score =  132 bits (334), Expect = 5e-35
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F W+V+H+N   +       F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF 
Sbjct: 412 FNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471

Query: 253 LEQE 256
           LEQE
Sbjct: 472 LEQE 475

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score =  300 bits (770), Expect = 1e-97
 Identities = 79/171 (46%), Positives = 119/171 (69%), Gaps = 3/171 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G ++++ NP+K L+IY +S +  Y+G       PH++ALA  AY S++    NQ  +
Sbjct: 39  TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVI 98

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVST---WVEQQILEANTILEAFGNAKTVRNDNSS 117
           ISGESGAGKTE +K I+Q+L  V+SN S     + + +L++N +LEAFGNAKT+RNDNSS
Sbjct: 99  ISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSS 158

Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           RFGK+M++ F+      G  I +YLLE+SR+  ++ GER++H+FYQ+++  
Sbjct: 159 RFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGL 209

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score =  128 bits (323), Expect = 1e-33
 Identities = 32/64 (50%), Positives = 39/64 (60%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV+ INT  N   +    +G+LDI+GFE F  NSFEQL IN+ NEKL + F      
Sbjct: 361 FNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLK 420

Query: 253 LEQE 256
            EQE
Sbjct: 421 SEQE 424

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score =  301 bits (773), Expect = 8e-96
 Identities = 88/176 (50%), Positives = 117/176 (66%), Gaps = 8/176 (4%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IYT++ V  Y G K     PHV+A+ E AY S+     +QS +
Sbjct: 91  TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSIL 150

Query: 61  ISGESGAGKTETTKFILQYLCSVTSN--------VSTWVEQQILEANTILEAFGNAKTVR 112
            +GESGAGKTE TK ++QYL  V S+        V   +E+Q+L+AN ILEAFGNAKTV+
Sbjct: 151 CTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVK 210

Query: 113 NDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  E ++H+FYQL+  A
Sbjct: 211 NDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGA 266

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score =  129 bits (326), Expect = 5e-34
 Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 193 FAWLVNHINTCTN-PGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           F WLV  +N   +   +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +F
Sbjct: 407 FRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMF 466

Query: 252 ALEQE 256
            LEQE
Sbjct: 467 VLEQE 471

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score =  293 bits (753), Expect = 2e-94
 Identities = 84/169 (49%), Positives = 117/169 (69%), Gaps = 2/169 (1%)

Query: 1   TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
           TY   IL+AVNPY ++  IY+   +  Y G  +G+  PHVFA+A+ A+  ++ L ++QS 
Sbjct: 84  TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 143

Query: 60  VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           ++SGESGAGKTE TKF+L+YL          ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 144 IVSGESGAGKTENTKFVLRYLTES-YGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 202

Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           GKF+++ F+ K  + G  +  YLLE+SRI  Q   ERNYH+FY+L   A
Sbjct: 203 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA 251

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score =  121 bits (307), Expect = 2e-31
 Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F  +VN +N C  P + S+ F+GVLDI GFE F  NSFEQ CINY NEKL +FFN  +  
Sbjct: 428 FDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILK 486

Query: 253 LEQE 256
            EQE
Sbjct: 487 EEQE 490

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score =  293 bits (751), Expect = 2e-92
 Identities = 95/172 (55%), Positives = 122/172 (70%), Gaps = 4/172 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176

Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236

Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           S FGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A
Sbjct: 237 SEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA 288

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score =  125 bits (315), Expect = 2e-32
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV  IN      + +  F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH++F 
Sbjct: 430 FLWLVKKINNVLCSERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFK 488

Query: 253 LEQE 256
           +EQE
Sbjct: 489 VEQE 492

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score =  287 bits (736), Expect = 4e-92
 Identities = 96/172 (55%), Positives = 123/172 (71%), Gaps = 4/172 (2%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176

Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236

Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA 288

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score =  121 bits (306), Expect = 3e-31
 Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV  IN      + +  F+GVLDI+GFE F VNSFEQLCINYTNEKL +FFNH++F 
Sbjct: 430 FLWLVKKINNVLCQERKA-YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFK 488

Query: 253 LEQE 256
           LEQE
Sbjct: 489 LEQE 492

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score =  281 bits (720), Expect = 1e-89
 Identities = 81/178 (45%), Positives = 108/178 (60%), Gaps = 10/178 (5%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V VNPYK L +YT   V  Y G K     PH+F++++ AY  +     NQS +
Sbjct: 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSIL 175

Query: 61  ISGESGAGKTETTKFILQYLCSVT----------SNVSTWVEQQILEANTILEAFGNAKT 110
           I+GESGAGKT  TK ++QY   +           S     +E QI++AN  LEAFGNAKT
Sbjct: 176 ITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKT 235

Query: 111 VRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           VRNDNSSRFGKF+++ F     +    I+ YLLE+SR+ FQ   ER+YH+FYQ++   
Sbjct: 236 VRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNK 293

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score =  126 bits (320), Expect = 4e-33
 Identities = 39/64 (60%), Positives = 45/64 (70%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F W+V  IN      Q    F+GVLDI GFE F  NSFEQLCIN+TNEKL +FFNH++F 
Sbjct: 436 FNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFV 495

Query: 253 LEQE 256
           LEQE
Sbjct: 496 LEQE 499

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score =  280 bits (719), Expect = 4e-89
 Identities = 85/179 (47%), Positives = 116/179 (64%), Gaps = 11/179 (6%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173

Query: 61  ISGESGAGKTETTKFILQYLCSVT-----------SNVSTWVEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V                  +E QI++AN +LEA+GNAK
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 233

Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A
Sbjct: 234 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score =  127 bits (322), Expect = 2e-33
 Identities = 37/64 (57%), Positives = 45/64 (70%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV  +N   +       ++GVLDI GFE F  NSFEQLCINYTNE+L +FFNH++F 
Sbjct: 435 FNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFI 494

Query: 253 LEQE 256
           LEQE
Sbjct: 495 LEQE 498

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score =  279 bits (716), Expect = 3e-87
 Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160

Query: 61  ISGESGAGKTETTKFILQYLCSVT-SNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           +SGESGAGKT + K+ ++Y  +V+ S     VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220

Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
           GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASA 269

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score =  134 bits (340), Expect = 7e-36
 Identities = 36/64 (56%), Positives = 45/64 (70%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F W+V+H+N   +       F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF 
Sbjct: 412 FNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471

Query: 253 LEQE 256
           LEQE
Sbjct: 472 LEQE 475

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  255 bits (653), Expect = 5e-78
 Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173

Query: 61  ISGESGAGKTETTKFILQYLCSVTSN---------------VSTWVEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S+                   +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233

Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293

Query: 166 EAA 168
             A
Sbjct: 294 AGA 296

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  128 bits (323), Expect = 1e-33
 Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 193 FAWLVNHINTC-TNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
           F W++  +N       +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +F
Sbjct: 438 FRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMF 497

Query: 252 ALEQE 256
            LEQE
Sbjct: 498 ILEQE 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 77/254 (30%)

Query: 34  SQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQ 93
           S+      L +A    L  L   ++ +I G  G+GK                   TWV  
Sbjct: 132 SRLQPYLKLRQA----LLELRPAKNVLIDGVLGSGK-------------------TWVAL 168

Query: 94  QILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWM-IKGCIIQDYLLEQ-----SR 147
            +  +  +                 F  F        W+ +K C   + +LE       +
Sbjct: 169 DVCLSYKVQCKMD------------FKIF--------WLNLKNCNSPETVLEMLQKLLYQ 208

Query: 148 IT--FQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVI----WVFAWLVNHIN 201
           I   + S  + + ++  ++           + ++     E   ++       A   N  N
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCLLVLLNVQN-AKAWNAFN 263

Query: 202 -TC----TNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEK----LHKFFNHYVFA 252
            +C    T      TRF  V D          S +   +  T ++    L K+ +     
Sbjct: 264 LSCKILLT------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 253 LEQEIVSISIKPRL 266
           L +E+++ +  PR 
Sbjct: 318 LPREVLTTN--PRR 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	100.0
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	100.0
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	100.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	100.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	100.0
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	100.0
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	100.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	100.0
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	100.0
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	100.0
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.46
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.31
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.3
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.11
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.02
3bos_A	242	Putative DNA replication factor; P-loop containing	95.97
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.84
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.83
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.81
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.8
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.73
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.7
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.67
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.56
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.47
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.41
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.39
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.39
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.35
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.32
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.3
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.29
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.27
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.27
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.22
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.21
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.21
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.15
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.08
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.08
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.05
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	94.94
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.94
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.9
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	94.86
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.84
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.84
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.84
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.83
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.82
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.81
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.79
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.75
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	94.73
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	94.69
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.67
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.67
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.66
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.63
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.58
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.58
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.55
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.54
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.54
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.53
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.49
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.48
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.47
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	94.46
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.44
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.43
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.42
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.42
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.42
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.4
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.4
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.38
1via_A	175	Shikimate kinase; structural genomics, transferase	94.37
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.36
1p9r_A	418	General secretion pathway protein E; bacterial typ	94.35
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.35
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.24
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	94.23
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	94.22
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.21
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.17
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.17
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.13
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.13
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.12
3pvs_A	447	Replication-associated recombination protein A; ma	94.11
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.09
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	94.06
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.02
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	93.98
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.97
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.95
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	93.92
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.88
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	93.88
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	93.8
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.8
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	93.75
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.74
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	93.73
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.73
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	93.72
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.72
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.71
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	93.71
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.7
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.69
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	93.66
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.64
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	93.63
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	93.63
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.62
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.57
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.56
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	93.56
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.52
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	93.51
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.51
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.5
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.49
4a74_A	231	DNA repair and recombination protein RADA; hydrola	93.48
2chq_A	319	Replication factor C small subunit; DNA-binding pr	93.45
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	93.44
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.43
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	93.4
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.35
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	93.34
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	93.33
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.31
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	93.29
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	93.28
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	93.27
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.26
3co5_A	143	Putative two-component system transcriptional RES	93.26
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.25
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.25
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.22
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.2
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.17
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.08
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	92.83
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.81
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.66
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.57
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	92.55
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	92.55
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	92.53
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.53
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	92.51
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	92.49
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	92.47
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	92.46
2og2_A	359	Putative signal recognition particle receptor; nuc	92.42
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	92.39
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.37
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	92.36
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	92.33
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	92.3
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	92.28
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	92.27
2ghi_A	260	Transport protein; multidrug resistance protein, M	92.26
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	92.24
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.21
1b0u_A	262	Histidine permease; ABC transporter, transport pro	92.2
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.19
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	92.19
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	92.15
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	92.12
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	92.11
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	92.09
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.06
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	92.05
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	92.03
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	92.02
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	92.01
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.01
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	91.98
1g6h_A	257	High-affinity branched-chain amino acid transport	91.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	91.96
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	91.96
2qgz_A	308	Helicase loader, putative primosome component; str	91.93
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.93
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	91.92
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	91.89
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	91.87
2hf9_A	226	Probable hydrogenase nickel incorporation protein	91.86
2cvh_A	220	DNA repair and recombination protein RADB; filamen	91.84
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	91.84
1sgw_A	214	Putative ABC transporter; structural genomics, P p	91.82
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.79
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	91.75
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	91.68
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.67
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	91.66
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.66
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	91.63
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	91.58
1ji0_A	240	ABC transporter; ATP binding protein, structural g	91.54
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	91.49
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.44
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	91.39
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	91.35
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	91.32
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	91.29
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	91.29
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	91.28
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.28
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	91.22
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.21
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	91.17
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	91.16
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.11
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.07
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.06
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	91.03
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	91.01
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	91.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	90.95
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	90.94
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	90.86
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.84
3kta_A	182	Chromosome segregation protein SMC; structural mai	90.84
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	90.73
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	90.65
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	90.62
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	90.61
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	90.6
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.57
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	90.51
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	90.5
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.45
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.42
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	90.42
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	90.35
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	90.3
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	90.28
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	90.17
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	90.09
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	90.05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	90.02
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	89.98
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	89.96
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	89.96
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	89.94
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	89.92
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	89.87
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	89.85
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	89.73
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	89.63
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	89.51
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	89.51
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	89.47
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.31
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	89.16
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	89.11
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	89.11
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	89.07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	88.92
3ice_A	422	Transcription termination factor RHO; transcriptio	88.89
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	88.82
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	88.74
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	88.61
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	88.61
1tue_A	212	Replication protein E1; helicase, replication, E1E	88.59
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	88.58
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	88.57
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.54
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	88.4
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	88.23
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	88.2
2fna_A	357	Conserved hypothetical protein; structural genomic	88.18
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	88.04
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	88.03
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	87.92
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	87.87
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	87.8
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	87.79
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	87.76
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	87.7
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	87.69
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	87.63
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	87.58
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	87.53
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	87.06
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	87.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	86.83
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	86.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	86.72
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	86.71
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	86.7
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	86.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	86.65
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	86.65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	86.6
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	86.54
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	86.43
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	86.35
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	86.27
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	86.27
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	86.21
2wji_A	165	Ferrous iron transport protein B homolog; membrane	86.19
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	86.17
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	86.14
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	86.14
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	86.01
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	86.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	85.98
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	85.88
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	85.84
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	85.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	85.82
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	85.78
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	85.69
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	85.65
2r44_A	331	Uncharacterized protein; putative ATPase, structur	85.6
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	85.56
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	85.5
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	85.48
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	85.47
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	85.46
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	85.45
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	85.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	85.33
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	85.21
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	85.2
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	85.19
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	85.18
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	85.18
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	85.08
2fh5_B	214	SR-beta, signal recognition particle receptor beta	85.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	85.0
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	84.99
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	84.97
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	84.95
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	84.93
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	84.89
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	84.76
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	84.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	84.67
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	84.62
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	84.62
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	84.58
2xxa_A	433	Signal recognition particle protein; protein trans	84.53
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	84.47
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	84.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	84.43
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	84.34
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	84.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	84.31
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	84.29
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	84.29
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	84.27
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	84.25
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	84.18
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	84.17
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	84.15
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	84.14
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	84.12
1nrj_B	218	SR-beta, signal recognition particle receptor beta	84.12
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	84.09
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	84.08
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	84.07
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	83.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	83.96
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	83.9
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	83.88
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	83.87
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	83.82
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	83.81
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	83.76
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	83.73
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	83.71
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	83.68
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	83.64
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	83.62
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	83.6
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	83.5
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	83.5
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	83.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	83.48
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	83.48
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	83.44
3b6e_A	216	Interferon-induced helicase C domain-containing P;	83.43
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	83.41
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	83.38
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	83.35
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	83.35
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	83.26
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	83.22
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	83.18
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	83.17
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	82.98
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	82.92
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	82.89
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	82.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	82.78
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	82.77
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	82.71
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	82.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	82.65
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	82.64
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	82.64
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	82.61
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	82.47
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	82.45
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	82.43
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	82.41
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	82.39
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	82.38
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	82.37
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	82.28
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	82.24
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	82.07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	82.03
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	81.92
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	81.89
2r6a_A	454	DNAB helicase, replicative helicase; replication,	81.79
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	81.59
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	81.48
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	81.41
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	81.25
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	81.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	81.18
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	81.18
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	81.06
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	81.04
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	81.03
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	81.03
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	81.01
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	80.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	80.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	80.85
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	80.69
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	80.68
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	80.67
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	80.63
3l0o_A	427	Transcription termination factor RHO; helicase, RH	80.57
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	80.52
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	80.47
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	80.42
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	80.38
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	80.3
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	80.27
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	80.23
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	80.21
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	80.09
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	80.06

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=100.00  E-value=1.9e-98  Score=764.27  Aligned_cols=264  Identities=47%  Similarity=0.733  Sum_probs=243.2

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|+.||+.|+..++||||||||||||||||++|+||+||
T Consensus       116 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yl  195 (783)
T 4db1_A          116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYF  195 (783)
T ss_dssp             EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC----------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccc
Q psy17386         81 CSVTSNV----------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITF  150 (276)
Q Consensus        81 ~~~~~~~----------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~  150 (276)
                      +.++++.          ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.
T Consensus       196 a~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~  275 (783)
T 4db1_A          196 AVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIF  275 (783)
T ss_dssp             HHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTC
T ss_pred             hhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCCCEeeeEEEEeecccceeec
Confidence            9987643          246899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHhhcccChhHHH---------Hcc----------------------------CCChhh--------
Q psy17386        151 QSPGERNYHVFYQLVEAAQYSSSINK---------EIM----------------------------HYTSEE--------  185 (276)
Q Consensus       151 ~~~~ErnfHIFYqllaG~~~~~~l~~---------~~~----------------------------~~~~~d--------  185 (276)
                      |++||||||||||||+|++++  +++         .|+                            +|+++|        
T Consensus       276 q~~gERnfHIFYqLlaG~~~~--~~~~l~L~~~~~~y~yl~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~il  353 (783)
T 4db1_A          276 QLKAERDYHIFYQILSNKKPE--LLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLT  353 (783)
T ss_dssp             CCTTCCSBHHHHHHHTCSSHH--HHHHTTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             cCCCCCcchhHHHHHcCCCHH--HHHHhccCCCHHHCccccCCCcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999999999998742  221         111                            222211        


Q ss_pred             ---------------------------------------------------------------------hhhh------h
Q psy17386        186 ---------------------------------------------------------------------KSHV------I  190 (276)
Q Consensus       186 ---------------------------------------------------------------------~rda------~  190 (276)
                                                                                           +|||      +
T Consensus       354 aaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~  433 (783)
T 4db1_A          354 GAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYE  433 (783)
T ss_dssp             HHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHH
Confidence                                                                                 4565      9


Q ss_pred             hHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       191 ~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      |||+|||++||++|.+......+||||||||||+|+.|||||||||||||||||+||++||+.||+||.+|||+|.
T Consensus       434 rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~  509 (783)
T 4db1_A          434 RMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWT  509 (783)
T ss_dssp             HHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Confidence            9999999999999987766778999999999999999999999999999999999999999999999999999983

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=100.00  E-value=4e-98  Score=755.21  Aligned_cols=266  Identities=42%  Similarity=0.671  Sum_probs=241.9

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|++||+.|+.+++||||||||||||||||++|+||+||
T Consensus        39 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl  118 (697)
T 1lkx_A           39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL  118 (697)
T ss_dssp             EESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386         81 CSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN  157 (276)
Q Consensus        81 ~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern  157 (276)
                      +.++++.   ...++++|++++|||||||||||++|+||||||||++|+|+.+|.++||+|.+||||||||+.|++||||
T Consensus       119 a~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERn  198 (697)
T 1lkx_A          119 TFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERS  198 (697)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCC
T ss_pred             HhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeeeeeeeeeccCceeeeecCCCCc
Confidence            9998732   2468899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccChh--HH-----HHcc-----------------------------C---------------------
Q psy17386        158 YHVFYQLVEAAQYSSS--IN-----KEIM-----------------------------H---------------------  180 (276)
Q Consensus       158 fHIFYqllaG~~~~~~--l~-----~~~~-----------------------------~---------------------  180 (276)
                      ||||||||+|++++..  |.     +.|+                             |                     
T Consensus       199 fHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGN  278 (697)
T 1lkx_A          199 FHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGN  278 (697)
T ss_dssp             BHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             eeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Confidence            9999999999874311  00     0111                             1                     


Q ss_pred             --CCh-----h--h-------------------------------------------------------hhhh------h
Q psy17386        181 --YTS-----E--E-------------------------------------------------------KSHV------I  190 (276)
Q Consensus       181 --~~~-----~--d-------------------------------------------------------~rda------~  190 (276)
                        |..     +  |                                                       +|||      +
T Consensus       279 i~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~  358 (697)
T 1lkx_A          279 ITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYE  358 (697)
T ss_dssp             CCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHH
T ss_pred             ceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHH
Confidence              211     0  0                                                       3455      9


Q ss_pred             hHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       191 ~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      |||+|||++||++|.++.....+||||||||||+|+.|||||||||||||||||+|++++|+.||+||++|||+|.
T Consensus       359 rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~  434 (697)
T 1lkx_A          359 RLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWK  434 (697)
T ss_dssp             HHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhhcCCCCCCceeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            9999999999999987666689999999999999999999999999999999999999999999999999999974

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=100.00  E-value=3.6e-98  Score=764.37  Aligned_cols=266  Identities=45%  Similarity=0.794  Sum_probs=244.7

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus       101 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl  180 (795)
T 1w7j_A          101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  180 (795)
T ss_dssp             EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         81 CSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        81 ~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      +.++++. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||||
T Consensus       181 a~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfH  260 (795)
T 1w7j_A          181 ATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYH  260 (795)
T ss_dssp             HHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBH
T ss_pred             HhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccceEeccCCCCCchH
Confidence            9998754 358999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh-------------------
Q psy17386        160 VFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE-------------------  185 (276)
Q Consensus       160 IFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d-------------------  185 (276)
                      ||||||+|+++++.  |.    +.|+                             ||+++|                   
T Consensus       261 IFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F  340 (795)
T 1w7j_A          261 IFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEF  340 (795)
T ss_dssp             HHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceE
Confidence            99999999875321  00    1111                             222221                   


Q ss_pred             ----------------------------------------------------------hhhh------hhHHHHHHHHhh
Q psy17386        186 ----------------------------------------------------------KSHV------IWVFAWLVNHIN  201 (276)
Q Consensus       186 ----------------------------------------------------------~rda------~~LF~wlv~~iN  201 (276)
                                                                                +|||      ++||+|||++||
T Consensus       341 ~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN  420 (795)
T 1w7j_A          341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN  420 (795)
T ss_dssp             EEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                      4566      999999999999


Q ss_pred             hccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        202 TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       202 ~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      ++|.++.+...+||||||||||+|+.|||||||||||||||||+|++++|+.||+||++|||+|.
T Consensus       421 ~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~  485 (795)
T 1w7j_A          421 KALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT  485 (795)
T ss_dssp             HHHCCSSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HhhcCCccccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99987766789999999999999999999999999999999999999999999999999999885

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=100.00  E-value=1.2e-97  Score=763.90  Aligned_cols=266  Identities=47%  Similarity=0.770  Sum_probs=243.9

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus       114 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yl  193 (837)
T 1kk8_A          114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL  193 (837)
T ss_dssp             EEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC-----------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccccccc
Q psy17386         81 CSVTSNV-----------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRIT  149 (276)
Q Consensus        81 ~~~~~~~-----------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~  149 (276)
                      +.++++.           ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+
T Consensus       194 a~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv  273 (837)
T 1kk8_A          194 AKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVT  273 (837)
T ss_dssp             HHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGT
T ss_pred             HHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCCCCEeeeEEEEEeccCceee
Confidence            9998643           14689999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHHHhhcccChh--HH-----HHcc----------------------------CCChhh---------
Q psy17386        150 FQSPGERNYHVFYQLVEAAQYSSS--IN-----KEIM----------------------------HYTSEE---------  185 (276)
Q Consensus       150 ~~~~~ErnfHIFYqllaG~~~~~~--l~-----~~~~----------------------------~~~~~d---------  185 (276)
                      .|++||||||||||||+|++++..  |.     +.|+                            ||+++|         
T Consensus       274 ~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilA  353 (837)
T 1kk8_A          274 YQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTA  353 (837)
T ss_dssp             CCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             eecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCCcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHH
Confidence            999999999999999999975421  00     1121                            222221         


Q ss_pred             --------------------------------------------------------------------hhhh------hh
Q psy17386        186 --------------------------------------------------------------------KSHV------IW  191 (276)
Q Consensus       186 --------------------------------------------------------------------~rda------~~  191 (276)
                                                                                          +|||      ++
T Consensus       354 aILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~r  433 (837)
T 1kk8_A          354 SILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDR  433 (837)
T ss_dssp             HHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHH
Confidence                                                                                4565      99


Q ss_pred             HHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       192 LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      ||+|||++||++|.+......+||||||||||+|+.|||||||||||||||||+|++++|+.||+||.+|||+|.
T Consensus       434 LF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~  508 (837)
T 1kk8_A          434 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWE  508 (837)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhccCCCCCcceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCcee
Confidence            999999999999987666789999999999999999999999999999999999999999999999999999873

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=100.00  E-value=2.9e-97  Score=753.95  Aligned_cols=264  Identities=52%  Similarity=0.811  Sum_probs=241.7

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+++|+|+++++++|+++.+.++|||||++|+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus       117 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl  196 (770)
T 1w9i_A          117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL  196 (770)
T ss_dssp             EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386         81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER  156 (276)
Q Consensus        81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er  156 (276)
                      +.++++..    ..++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++|||
T Consensus       197 a~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gER  276 (770)
T 1w9i_A          197 ASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETER  276 (770)
T ss_dssp             HHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCC
T ss_pred             HHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeecccCCCC
Confidence            99987542    57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh----------------
Q psy17386        157 NYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE----------------  185 (276)
Q Consensus       157 nfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d----------------  185 (276)
                      |||||||||+|++++..  +.    +.|+                             +|+++|                
T Consensus       277 nfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGN  356 (770)
T 1w9i_A          277 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGN  356 (770)
T ss_dssp             SBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHhcCCCHHHHHHhCCCChhhccccccCCccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Confidence            99999999999975321  00    1111                             222211                


Q ss_pred             ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386        186 ------------------------------------------------------------KSHV------IWVFAWLVNH  199 (276)
Q Consensus       186 ------------------------------------------------------------~rda------~~LF~wlv~~  199 (276)
                                                                                  +|||      +|||+|||++
T Consensus       357 i~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~  436 (770)
T 1w9i_A          357 IKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKK  436 (770)
T ss_dssp             CCCEECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                        4565      9999999999


Q ss_pred             hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      ||++|.++.. ..+||||||||||+|+.|||||||||||||||||+|++++|+.||+||.+|||+|
T Consensus       437 IN~~l~~~~~-~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w  501 (770)
T 1w9i_A          437 INNVLCQERK-AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW  501 (770)
T ss_dssp             HHHHHCCSCC-SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhcCCCC-CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCc
Confidence            9999986655 8899999999999999999999999999999999999999999999999999997

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=100.00  E-value=1.8e-96  Score=767.92  Aligned_cols=263  Identities=46%  Similarity=0.774  Sum_probs=238.8

Q ss_pred             CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+|++||+||||+.+| +|+++++++|+++.+.++||||||||+.||+.|+..++||||||||||||||||++|+||+|
T Consensus        88 Ty~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~y  167 (1052)
T 4anj_A           88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRY  167 (1052)
T ss_dssp             EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHH
Confidence            89999999999999998 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      |+.++++ ...++++|++++|||||||||||.+|+||||||||++|+||.+|.|+||+|.+||||||||+.|++||||||
T Consensus       168 La~~~~~-~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gERNfH  246 (1052)
T 4anj_A          168 LTESYGT-GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH  246 (1052)
T ss_dssp             HHHHHCC----CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTCCSBH
T ss_pred             HHHhcCC-CccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCCCCcc
Confidence            9998765 356789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh--HH----H----------------------------------------------Hcc--------
Q psy17386        160 VFYQLVEAAQYSSS--IN----K----------------------------------------------EIM--------  179 (276)
Q Consensus       160 IFYqllaG~~~~~~--l~----~----------------------------------------------~~~--------  179 (276)
                      ||||||+|++++..  |.    +                                              .|.        
T Consensus       247 IFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~  326 (1052)
T 4anj_A          247 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKK  326 (1052)
T ss_dssp             HHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHH
T ss_pred             cHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHHHHHH
Confidence            99999999875311  00    0                                              011        


Q ss_pred             -CCChhh-------------------------------------------------------------------------
Q psy17386        180 -HYTSEE-------------------------------------------------------------------------  185 (276)
Q Consensus       180 -~~~~~d-------------------------------------------------------------------------  185 (276)
                       ||+++|                                                                         
T Consensus       327 lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~  406 (1052)
T 4anj_A          327 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV  406 (1052)
T ss_dssp             HTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC------------
T ss_pred             cCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceE
Confidence             222211                                                                         


Q ss_pred             ------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHH
Q psy17386        186 ------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFN  247 (276)
Q Consensus       186 ------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~  247 (276)
                                  +|||      ++||+|||++||++|.+. ....+||||||||||+|+.|||||||||||||||||+||
T Consensus       407 i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~-~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn  485 (1052)
T 4anj_A          407 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFN  485 (1052)
T ss_dssp             -CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHH
Confidence                        3565      999999999999999754 457899999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHhhhCCCc
Q psy17386        248 HYVFALEQEIVSISIKPR  265 (276)
Q Consensus       248 ~~~f~~eq~eY~~E~~~~  265 (276)
                      ++||+.||+||.+|||+|
T Consensus       486 ~~vF~~EqeeY~~EgI~w  503 (1052)
T 4anj_A          486 ERILKEEQELYQKEGLGV  503 (1052)
T ss_dssp             HHHTTHHHHHHHHTTCCC
T ss_pred             HhhhHHHHHHHHhcCCCc
Confidence            999999999999999987

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=100.00  E-value=4.9e-96  Score=748.25  Aligned_cols=263  Identities=46%  Similarity=0.773  Sum_probs=235.1

Q ss_pred             CcccCeEEEecCCCCC-CCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l-~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ||+|++||+||||+.+ |+|+++++++|+++...++|||||++|++||+.|+..++||||||||||||||||++|+||+|
T Consensus        84 Ty~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~y  163 (784)
T 2v26_A           84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRY  163 (784)
T ss_dssp             EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHH
Confidence            8999999999999999 599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      |+.++++ ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||||
T Consensus       164 la~~~~~-~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfH  242 (784)
T 2v26_A          164 LTESYGT-GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH  242 (784)
T ss_dssp             HHHHHC-------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSBH
T ss_pred             HHhhcCC-CCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcch
Confidence            9998764 357899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh-------------H---------------------------------------HHHcc--------
Q psy17386        160 VFYQLVEAAQYSSS-------------I---------------------------------------NKEIM--------  179 (276)
Q Consensus       160 IFYqllaG~~~~~~-------------l---------------------------------------~~~~~--------  179 (276)
                      ||||||+|++++..             |                                       .+.|.        
T Consensus       243 IFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~  322 (784)
T 2v26_A          243 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKK  322 (784)
T ss_dssp             HHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence            99999999874210             0                                       00111        


Q ss_pred             -CCChhh-------------------------------------------------------------------------
Q psy17386        180 -HYTSEE-------------------------------------------------------------------------  185 (276)
Q Consensus       180 -~~~~~d-------------------------------------------------------------------------  185 (276)
                       ||+++|                                                                         
T Consensus       323 lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~  402 (784)
T 2v26_A          323 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV  402 (784)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------
T ss_pred             cCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCe
Confidence             111110                                                                         


Q ss_pred             ------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHH
Q psy17386        186 ------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFN  247 (276)
Q Consensus       186 ------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~  247 (276)
                                  +|||      +|||+|||++||++|.+. ....+||||||||||+|+.|||||||||||||||||+|+
T Consensus       403 i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~  481 (784)
T 2v26_A          403 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFN  481 (784)
T ss_dssp             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHH
Confidence                        3455      999999999999999653 457899999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHhhhCCCc
Q psy17386        248 HYVFALEQEIVSISIKPR  265 (276)
Q Consensus       248 ~~~f~~eq~eY~~E~~~~  265 (276)
                      +++|+.||+||++|||+|
T Consensus       482 ~~~f~~EqeeY~~EgI~w  499 (784)
T 2v26_A          482 ERILKEEQELYQKEGLGV  499 (784)
T ss_dssp             HHHTTHHHHHHHHTTCCC
T ss_pred             HhhhhhHHHHHHhcCCCc
Confidence            999999999999999987

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=100.00  E-value=7e-96  Score=769.04  Aligned_cols=266  Identities=45%  Similarity=0.794  Sum_probs=244.6

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++..|+++...++|||||+||+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus       101 Ty~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yl  180 (1080)
T 2dfs_A          101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  180 (1080)
T ss_dssp             EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         81 CSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        81 ~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      +.++++. ...++++|++++|||||||||||++|+||||||||++|+||.+|.|+||+|.+||||||||+.|++||||||
T Consensus       181 a~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsRVv~q~~~ERnfH  260 (1080)
T 2dfs_A          181 ATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYH  260 (1080)
T ss_dssp             HHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGGGTCCCTTCCSBH
T ss_pred             HhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCceeeccCCCCCcch
Confidence            9998754 357899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh-------------------
Q psy17386        160 VFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE-------------------  185 (276)
Q Consensus       160 IFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d-------------------  185 (276)
                      ||||||+|+++++.  |.    +.|+                             ||+++|                   
T Consensus       261 IFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F  340 (1080)
T 2dfs_A          261 IFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEF  340 (1080)
T ss_dssp             HHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             hHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceE
Confidence            99999999875421  00    1111                             222211                   


Q ss_pred             ----------------------------------------------------------hhhh------hhHHHHHHHHhh
Q psy17386        186 ----------------------------------------------------------KSHV------IWVFAWLVNHIN  201 (276)
Q Consensus       186 ----------------------------------------------------------~rda------~~LF~wlv~~iN  201 (276)
                                                                                +|||      ++||+|||.+||
T Consensus       341 ~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN  420 (1080)
T 2dfs_A          341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN  420 (1080)
T ss_dssp             EEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                      4565      999999999999


Q ss_pred             hccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        202 TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       202 ~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      ++|.++.+...+||||||||||+|+.|||||||||||||||||+||++||+.||+||.+|||+|.
T Consensus       421 ~~l~~~~~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~  485 (1080)
T 2dfs_A          421 KALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT  485 (1080)
T ss_dssp             HHHCCSSCCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             HhhccccccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Confidence            99987766789999999999999999999999999999999999999999999999999999874

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=100.00  E-value=4.9e-95  Score=757.65  Aligned_cols=264  Identities=51%  Similarity=0.792  Sum_probs=242.4

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++.+|+++.+.++|||||+||+.||+.|+..++||||||||||||||||++|+||+||
T Consensus       117 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yl  196 (1010)
T 1g8x_A          117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL  196 (1010)
T ss_dssp             EEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386         81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER  156 (276)
Q Consensus        81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er  156 (276)
                      +.++++..    ..++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++|||
T Consensus       197 a~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ER  276 (1010)
T 1g8x_A          197 ASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETER  276 (1010)
T ss_dssp             HHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCC
T ss_pred             HHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCC
Confidence            99987542    57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh----------------
Q psy17386        157 NYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE----------------  185 (276)
Q Consensus       157 nfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d----------------  185 (276)
                      |||||||||+|++++..  +.    +.|+                             ||+++|                
T Consensus       277 nfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGn  356 (1010)
T 1g8x_A          277 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGN  356 (1010)
T ss_dssp             CBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Confidence            99999999999975311  00    1111                             222211                


Q ss_pred             ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386        186 ------------------------------------------------------------KSHV------IWVFAWLVNH  199 (276)
Q Consensus       186 ------------------------------------------------------------~rda------~~LF~wlv~~  199 (276)
                                                                                  +|||      ++||+|||.+
T Consensus       357 i~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~  436 (1010)
T 1g8x_A          357 IKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKK  436 (1010)
T ss_dssp             CCCBCCTTSSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEecCCCccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                        4565      9999999999


Q ss_pred             hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      ||++|.++. ...+||||||||||+|+.|||||||||||||||||+|+++||+.||+||.+|||+|
T Consensus       437 IN~~l~~~~-~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w  501 (1010)
T 1g8x_A          437 INNVLCSER-KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINW  501 (1010)
T ss_dssp             HHHHHCCSS-CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHhcCCC-cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCc
Confidence            999998655 67899999999999999999999999999999999999999999999999999987

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=100.00  E-value=1.5e-95  Score=761.61  Aligned_cols=265  Identities=48%  Similarity=0.732  Sum_probs=241.3

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++.+|+++.+.++|||||+||+.||+.|+..++||||||||||||||||++|+||+||
T Consensus        91 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yl  170 (995)
T 2ycu_A           91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  170 (995)
T ss_dssp             EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHH
T ss_pred             eecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCc--------chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccC
Q psy17386         81 CSVTSNVS--------TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQS  152 (276)
Q Consensus        81 ~~~~~~~~--------~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~  152 (276)
                      +.++++..        ..++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|+
T Consensus       171 a~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~  250 (995)
T 2ycu_A          171 AHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQA  250 (995)
T ss_dssp             HHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCC
T ss_pred             HHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeeeccC
Confidence            99987532        4678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHhhcccChh--HH----HHcc---------------------------CCChhh--------------
Q psy17386        153 PGERNYHVFYQLVEAAQYSSS--IN----KEIM---------------------------HYTSEE--------------  185 (276)
Q Consensus       153 ~~ErnfHIFYqllaG~~~~~~--l~----~~~~---------------------------~~~~~d--------------  185 (276)
                      +||||||||||||+|++++..  +.    +.|+                           ||+++|              
T Consensus       251 ~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhl  330 (995)
T 2ycu_A          251 KDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQF  330 (995)
T ss_dssp             TTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCSCSSTTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHG
T ss_pred             CCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCccccCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999875311  00    1111                           222211              


Q ss_pred             ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386        186 ---------------------------------------------------------------KSHV------IWVFAWL  196 (276)
Q Consensus       186 ---------------------------------------------------------------~rda------~~LF~wl  196 (276)
                                                                                     +|||      ++||+||
T Consensus       331 Gni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wl  410 (995)
T 2ycu_A          331 GNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWL  410 (995)
T ss_dssp             GGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                           4565      9999999


Q ss_pred             HHHhhhccCCCCC-CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        197 VNHINTCTNPGQD-STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       197 v~~iN~~l~~~~~-~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                      |.+||++|.+... ...+||||||||||+|+.|||||||||||||||||+|+++||+.||+||.+|||+|
T Consensus       411 V~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w  480 (995)
T 2ycu_A          411 VLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPW  480 (995)
T ss_dssp             HHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCc
Confidence            9999999986554 67899999999999999999999999999999999999999999999999999987

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=100.00  E-value=1.1e-94  Score=768.49  Aligned_cols=264  Identities=47%  Similarity=0.742  Sum_probs=240.0

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+++|+|+++++..|+++.+.++|||||+||+.||+.|+..++||||||||||||||||++|+||+||
T Consensus       114 T~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yl  193 (1184)
T 1i84_S          114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  193 (1184)
T ss_dssp             EEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHH
T ss_pred             EecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC---------------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccc
Q psy17386         81 CSVTSNV---------------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQ  145 (276)
Q Consensus        81 ~~~~~~~---------------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEk  145 (276)
                      +.++++.               ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+|||||
T Consensus       194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga~i~~ylLEk  273 (1184)
T 1i84_S          194 AVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEK  273 (1184)
T ss_dssp             HHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEEEEEECCCCC
T ss_pred             HHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeeeEEeEeecCC
Confidence            9998752               2578999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHHHhhcccChhHHHH--------cc----------------------------CCChhh----
Q psy17386        146 SRITFQSPGERNYHVFYQLVEAAQYSSSINKE--------IM----------------------------HYTSEE----  185 (276)
Q Consensus       146 sRV~~~~~~ErnfHIFYqllaG~~~~~~l~~~--------~~----------------------------~~~~~d----  185 (276)
                      |||++|++||||||||||||+|++++  +++.        |+                            ||++++    
T Consensus       274 sRv~~q~~~ErnfhiFYqll~g~~~~--~~~~l~l~~~~~~~yl~~~~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i  351 (1184)
T 1i84_S          274 SRAIRQAKDERTFHIFYYLIAGASEQ--MRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSI  351 (1184)
T ss_dssp             GGGSCCCTTCCCCTHHHHHHHHCCHH--HHHHTTCCCTTSCSSCTTSSCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             ceeeeecCCCCchhhHHHHHcCCCHH--HHHHcCCCChHhCCccCCCCcCCCCCChHHHHHHHHHHHHhceeCHHHHHHH
Confidence            99999999999999999999999742  2211        11                            222211    


Q ss_pred             -------------------------------------------------------------------------hhhh---
Q psy17386        186 -------------------------------------------------------------------------KSHV---  189 (276)
Q Consensus       186 -------------------------------------------------------------------------~rda---  189 (276)
                                                                                               +|||   
T Consensus       352 ~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak  431 (1184)
T 1i84_S          352 LRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAK  431 (1184)
T ss_dssp             HHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHH
Confidence                                                                                     4565   


Q ss_pred             ---hhHHHHHHHHhhhccCCC-CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386        190 ---IWVFAWLVNHINTCTNPG-QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR  265 (276)
Q Consensus       190 ---~~LF~wlv~~iN~~l~~~-~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~  265 (276)
                         ++||+|||.+||.+|.+. .....+||||||||||+|+.||||||||||||||||||||++||+.||+||.+|||+|
T Consensus       432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~  511 (1184)
T 1i84_S          432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW  511 (1184)
T ss_dssp             HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc
Confidence               999999999999999865 4467899999999999999999999999999999999999999999999999999998


Q ss_pred             h
Q psy17386        266 L  266 (276)
Q Consensus       266 ~  266 (276)
                      .
T Consensus       512 ~  512 (1184)
T 1i84_S          512 N  512 (1184)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.46  E-value=0.0016  Score=52.42  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=27.6

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+..+....+++.|++|+|||..++.+.+.+..
T Consensus        37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            344466788999999999999999999988754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.31  E-value=0.0071  Score=48.64  Aligned_cols=63  Identities=11%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         18 IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        18 ~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -|..+..++|+.....++.-+-- .. +.....+.......|++.|++|+|||..++.+.+.+..
T Consensus         7 ~~~~~l~~~~~~~~~~~~~g~~~-~~-~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A            7 KYSRDLTALARAGKLDPVIGRDT-EI-RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             TTEEEHHHHHHTTCSCCCCSCHH-HH-HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccchhhcchH-HH-HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            34444555666554444332221 11 22233334466789999999999999999999888754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.30  E-value=0.0038  Score=51.24  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+.+++.|++|+|||+.++.+...+..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   64 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYE   64 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4688999999999999999999998863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.11  E-value=0.0038  Score=52.38  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=24.0

Q ss_pred             HhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         49 SLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|........|++.|.+|||||+.++.+...+
T Consensus        22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            35555667899999999999999999998876

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.02  E-value=0.006  Score=51.12  Aligned_cols=30  Identities=23%  Similarity=0.169  Sum_probs=26.5

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .......|++.|.||||||+.++.+...|.
T Consensus        21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345678999999999999999999999885

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.97  E-value=0.0097  Score=49.99  Aligned_cols=38  Identities=18%  Similarity=0.065  Sum_probs=30.4

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.+......+.+++.|++|+|||+.++.+.+.+..
T Consensus        41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34445555557899999999999999999999888764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.84  E-value=0.0052  Score=49.95  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|+++|.||||||+.++.+.+.|
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999988865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.83  E-value=0.0094  Score=50.29  Aligned_cols=29  Identities=24%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.|.|.|.||||||+.++.+...+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            56789999999999999999999998863

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.81  E-value=0.0046  Score=52.41  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|||+|.||||||+.++.+++-+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            399999999999999999987653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.80  E-value=0.0053  Score=50.75  Aligned_cols=27  Identities=15%  Similarity=0.331  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.|+++|.||||||+.++.++..+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            346799999999999999999988753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.73  E-value=0.011  Score=49.22  Aligned_cols=26  Identities=27%  Similarity=0.287  Sum_probs=24.0

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.|++.|++|+|||..++.+...+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~   80 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK   80 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999988764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.70  E-value=0.0057  Score=50.30  Aligned_cols=30  Identities=17%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      |..-...+.|++.|.+|||||+.++.+...
T Consensus         3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            3 MTDDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            444556789999999999999999988765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.56  E-value=0.0072  Score=50.89  Aligned_cols=26  Identities=38%  Similarity=0.491  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+++.|.||||||+..+.++..+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46799999999999999999999764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.47  E-value=0.0096  Score=48.12  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|-|+++|.+|||||+.++.+-+.|-
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            48999999999999999999888753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.41  E-value=0.0096  Score=49.38  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.|.+.|.||||||+.++.+...+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            35689999999999999999998875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.39  E-value=0.0097  Score=47.70  Aligned_cols=24  Identities=13%  Similarity=0.072  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+++|.+|||||+.++.+.+.|-
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999887763

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.39  E-value=0.016  Score=51.38  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +++.+. -...+.+.+.|.||||||+..+.++.++...
T Consensus        16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~   52 (261)
T 2eyu_A           16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT   52 (261)
T ss_dssp             HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence            444554 5677899999999999999999999987543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.35  E-value=0.02  Score=46.94  Aligned_cols=36  Identities=22%  Similarity=0.223  Sum_probs=27.9

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+..+.......+++.|++|+|||..++.+.+.+.
T Consensus        28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            344444555555699999999999999999988864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.32  E-value=0.012  Score=48.13  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|+++|.+|||||+.++.+.+.+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999988776

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.30  E-value=0.012  Score=49.17  Aligned_cols=26  Identities=31%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|.+|||||+.++.+.+.|
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999998876

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.29  E-value=0.0089  Score=50.60  Aligned_cols=28  Identities=25%  Similarity=0.305  Sum_probs=24.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .....|+++|.||||||+.++.+.+.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3457899999999999999999988764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.27  E-value=0.011  Score=49.42  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=22.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-.|+|+|.+|||||+.++.+.+.+-
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34699999999999999999988763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.27  E-value=0.016  Score=46.88  Aligned_cols=28  Identities=25%  Similarity=0.230  Sum_probs=25.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+.+++.|++|+|||+.++.+...+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            6789999999999999999999888753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.22  E-value=0.0098  Score=49.95  Aligned_cols=27  Identities=30%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +...|+++|.||||||+.++.+.+.+.
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            456799999999999999999998873

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.21  E-value=0.012  Score=48.08  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..-|+++|.+|||||+.++.+.+.|.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.21  E-value=0.0097  Score=49.33  Aligned_cols=26  Identities=35%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|.||||||+.++.+...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999998876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.20  E-value=0.029  Score=46.35  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=25.1

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+..+++.|++|+|||+.++.+.+.+..
T Consensus        42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            344568999999999999999999887753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.15  E-value=0.016  Score=47.03  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=22.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|.+|||||+.++.+.+.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999988765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.08  E-value=0.013  Score=49.32  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..+.+...+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4567899999999999999999888753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.08  E-value=0.014  Score=47.70  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.1

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|++.|.+|||||+.++.+.+.|-
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46799999999999999999988763

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.05  E-value=0.022  Score=48.05  Aligned_cols=31  Identities=16%  Similarity=0.126  Sum_probs=26.7

Q ss_pred             HhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         51 QNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ........|++.|.+|||||+.++.+.+.|.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3345668899999999999999999999886

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=94.94  E-value=0.029  Score=50.27  Aligned_cols=45  Identities=16%  Similarity=0.034  Sum_probs=32.3

Q ss_pred             CchhHHHHHHHHHhHhcC--CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         37 PHVFALAEAAYSSLQNLD--VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        37 PHifavA~~Ay~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .|..+.  .+.+.+....  ....+++.|++|+|||+.++.+.+.+...
T Consensus        18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            454433  3344444443  45789999999999999999999988643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.94  E-value=0.018  Score=46.97  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=24.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +...|+++|.+|||||+.++.+.+.|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999999874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.90  E-value=0.014  Score=47.57  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|++.|-+|||||+.++.+.+.|.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=94.86  E-value=0.018  Score=49.74  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|++.|.+|||||+.++.+.+.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.84  E-value=0.017  Score=48.28  Aligned_cols=28  Identities=21%  Similarity=0.200  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+...|.|.|.+|||||+.++.+...+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3457899999999999999999998864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.84  E-value=0.016  Score=49.51  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|+|+|.||||||+.++.+++.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            457899999999999999999998764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.84  E-value=0.016  Score=49.97  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=23.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.++|+|.||||||+..+.++..+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            457899999999999999999988764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.83  E-value=0.051  Score=47.63  Aligned_cols=27  Identities=22%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+..+++.|++|+|||+.++.+.+.+
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999998887

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.82  E-value=0.015  Score=49.68  Aligned_cols=26  Identities=35%  Similarity=0.361  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.|.|+||||||+..+.++..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.81  E-value=0.02  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|+++|.+|||||+.++.+-+.|
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998876

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.79  E-value=0.015  Score=46.21  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|+++|.+|||||+.++.+ +.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHC
Confidence            5899999999999999988 543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.75  E-value=0.016  Score=46.66  Aligned_cols=25  Identities=28%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..|++.|.+|||||+.++.+-..+-
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5699999999999999998877653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=94.73  E-value=0.02  Score=47.04  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=24.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +...|++.|.+|||||+.++.+.+.|..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4567999999999999999999998864

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=94.69  E-value=0.021  Score=47.54  Aligned_cols=23  Identities=43%  Similarity=0.658  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.|++|||||+..|.+...+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999886

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.67  E-value=0.073  Score=46.88  Aligned_cols=57  Identities=14%  Similarity=0.140  Sum_probs=37.6

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..++|+.....++.-|--  +-+..+.+...++...+++.|++|+|||+.++.+.+.+.
T Consensus        15 ~~~k~~p~~~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           15 WVEKYRPQRLDDIVGQEH--IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHTCCCSTTTCCSCHH--HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             hhhccCCCCHHHhhCCHH--HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            345566555444433321  223344555556555699999999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.67  E-value=0.04  Score=49.63  Aligned_cols=30  Identities=27%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+...|.|.|.||||||+.++.+.+.|..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            346678999999999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.66  E-value=0.023  Score=55.90  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=25.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.|++.|.||||||+.++.+...|..
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            45688999999999999999999998863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.63  E-value=0.054  Score=49.01  Aligned_cols=57  Identities=14%  Similarity=0.095  Sum_probs=36.7

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+|+-....+...|--  +-+..+.....++-..+++.|++|+|||+.++.+.+.+.
T Consensus        15 ~~~k~rp~~~~~~~g~~~--~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           15 WVEKYRPETLDEVYGQNE--VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHTCCSSGGGCCSCHH--HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hHHHhCCCcHHHhcCcHH--HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            455666554444433322  223344445555433499999999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.58  E-value=0.022  Score=45.80  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+++|.+|||||+.++.+-+.|-
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999888753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.58  E-value=0.021  Score=51.14  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|+++|.||||||+.++.+.+.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.55  E-value=0.025  Score=46.38  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=24.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+.+|.+...+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            567889999999999999999999987

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.54  E-value=0.04  Score=54.00  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             CCCCCchhH---HHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         33 GSQEPHVFA---LAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        33 ~~~pPHifa---vA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +..|||-|.   |+....+.+. ..+....|+++|-+|||||+.++.+.+.|..
T Consensus       345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            445677776   5533322221 2334578999999999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.54  E-value=0.022  Score=46.87  Aligned_cols=24  Identities=33%  Similarity=0.361  Sum_probs=21.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|++.|.+|||||+.++.+.+.|-
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.54  E-value=0.023  Score=45.80  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ..|++.|.+|||||+.++.+.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4699999999999999999887

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.53  E-value=0.022  Score=46.88  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      +.|++.|.+|||||+.++.+...
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            46899999999999999999763

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.49  E-value=0.024  Score=45.48  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+++|.+|||||+.++.+-+.|-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.48  E-value=0.025  Score=47.43  Aligned_cols=29  Identities=28%  Similarity=0.153  Sum_probs=25.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+...|.++|.||||||+.++.+...+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45678999999999999999999988753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.47  E-value=0.011  Score=49.27  Aligned_cols=27  Identities=26%  Similarity=0.231  Sum_probs=24.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.|.|.|+||||||+.++.++.++...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            568899999999999999999998754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.46  E-value=0.037  Score=50.20  Aligned_cols=38  Identities=26%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.+.......+++|+|++|+|||..++.+.+.+..
T Consensus        34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~   71 (384)
T 2qby_B           34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE   71 (384)
T ss_dssp             HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34455555667789999999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.44  E-value=0.027  Score=47.45  Aligned_cols=25  Identities=36%  Similarity=0.424  Sum_probs=22.3

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|.|.|.+|||||+.++.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.43  E-value=0.01  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .|+|.|.+|||||+.++.+.++|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4899999999999999999998753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.42  E-value=0.023  Score=45.22  Aligned_cols=26  Identities=15%  Similarity=0.529  Sum_probs=21.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+..|++.||+|+|||..++.+-+.
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence            45678999999999999999877554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.42  E-value=0.025  Score=46.10  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=22.3

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|++.|.+|||||+.++.+.+.|
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.42  E-value=0.024  Score=51.15  Aligned_cols=54  Identities=15%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             HhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         26 EYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        26 ~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +|+.+...++.-|--  +.++.+... ..++-..+++.|++|+|||+.++.+.+.+.
T Consensus         7 kyrP~~~~~~vg~~~--~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E            7 KYRPKSLNALSHNEE--LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             TTCCCSGGGCCSCHH--HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             ccCCCCHHHhcCCHH--HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            444444444443322  223444444 444333399999999999999999998653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.40  E-value=0.025  Score=46.17  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+++|.+|||||+.++.+-+.|-
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            599999999999999999988653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.40  E-value=0.045  Score=47.77  Aligned_cols=28  Identities=21%  Similarity=0.148  Sum_probs=24.5

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ......+++.|++|+|||..++.+.+.+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            4567899999999999999999988874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.38  E-value=0.046  Score=49.49  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             HHHHhHhcCCCc--eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQNLDVNQ--SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~~~~~Q--sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +...........  +++|+|++|+|||..++.+.+.+..
T Consensus        32 ~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~   70 (389)
T 1fnn_A           32 LLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD   70 (389)
T ss_dssp             HHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence            334444445566  8999999999999999999988743

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.37  E-value=0.026  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|+|.|.+|||||+.++.+-+.|
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            59999999999999999988765

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.36  E-value=0.032  Score=46.57  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=24.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..|+++|.||||||+.++.+++.|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            579999999999999999999988653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=94.35  E-value=0.042  Score=52.15  Aligned_cols=37  Identities=27%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+++.+. ......|+++|.+|||||+..+.++.++..
T Consensus       157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            3566664 356678999999999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.35  E-value=0.021  Score=48.60  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +...|++.|.+|||||+.++.+.+.|
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            44679999999999999999998775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.24  E-value=0.041  Score=50.02  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=26.2

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+...|.|.|.||||||+.++.|...+..
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            356788999999999999999999988764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=94.23  E-value=0.038  Score=51.26  Aligned_cols=37  Identities=22%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .++.+.. .....|+++|.+|||||+..+.++.++...
T Consensus       114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            3455543 344589999999999999999999987654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=94.22  E-value=0.035  Score=45.44  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             CCceEEEeCCCCCChhHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKF   75 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~   75 (276)
                      +.+.+.+.|+||||||+.+|.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHH
Confidence            457899999999999999994

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.17  E-value=0.042  Score=50.38  Aligned_cols=38  Identities=11%  Similarity=0.020  Sum_probs=32.5

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.....+.+.+|+|+|.+|+|||..++.+++-|..
T Consensus        34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34555566788999999999999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.17  E-value=0.026  Score=45.85  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|+++|.+|||||+.++.+.+.|-
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999988763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.13  E-value=0.051  Score=48.95  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=24.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+...|.|.|.||||||+.++.+...+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5567899999999999999999988775

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.13  E-value=0.031  Score=45.56  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=21.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|+++|-+|||||+.++.+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.12  E-value=0.031  Score=46.27  Aligned_cols=27  Identities=15%  Similarity=0.331  Sum_probs=23.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..-|++.|-+|||||+.++.+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999998754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.11  E-value=0.049  Score=51.99  Aligned_cols=58  Identities=17%  Similarity=0.205  Sum_probs=38.4

Q ss_pred             HHHhhcCcCCCCCCchhHHHH-HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         24 VCEYHGAKMGSQEPHVFALAE-AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~-~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .++|+.....++.-+--.+.. ...+.++...+-.++++.|++|+|||+.++.+.+.+.
T Consensus        17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            344554444444322222211 4556666777778999999999999999999988763

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.09  E-value=0.031  Score=46.85  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+++|.+|||||+.++.+.+.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999987765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=94.06  E-value=0.036  Score=45.41  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +...|++.|.+|||||+.++.+.+.|
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.02  E-value=0.038  Score=44.96  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +..|++.|.+|||||+.++.+.+.+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3569999999999999999988775

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.02  E-value=0.12  Score=46.61  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=35.6

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+|+.....++.-+--.+  +..+..+ ..+.+..++++|++|+|||+.++.+.+.+..
T Consensus         7 ~~k~rp~~~~~~vg~~~~~--~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A            7 ARKWRPQTFADVVGQEHVL--TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             HHHTCCCSTTTSCSCHHHH--HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             HHhhCCCchhhccCcHHHH--HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3455555444443222111  2233333 3445678999999999999999999988753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.00  E-value=0.029  Score=46.04  Aligned_cols=26  Identities=19%  Similarity=0.274  Sum_probs=23.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|+++|.+|||||+.++.+.+.|-
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=93.98  E-value=0.12  Score=45.94  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=38.8

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+++|+.....++.-|--.  -+..+.+.. .+.+..+++.|++|+|||..++.+.+.+
T Consensus        16 ~~~k~rP~~~~~ivg~~~~--~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           16 LEQKYRPSTIDECILPAFD--KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             HHHHSCCCSTTTSCCCHHH--HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             HHHhhCCCCHHHHhCcHHH--HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            5677877766666544322  233444444 4456788999999999999999998876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.97  E-value=0.026  Score=45.77  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|+++|.+|||||+.++.+-+.|-
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45799999999999999999887753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.97  E-value=0.037  Score=46.14  Aligned_cols=27  Identities=15%  Similarity=0.070  Sum_probs=24.0

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..|.++|.||||||+.+..+++.|...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            468999999999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.95  E-value=0.042  Score=45.64  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=24.7

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ......|++.|.+|||||+.++.+.+.|-
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44556899999999999999999988763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=93.92  E-value=0.043  Score=47.07  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+..|++.|++|+|||..++.+.+.+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999888753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.90  E-value=0.028  Score=48.99  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=24.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .....|++.|.+|||||+.++.+.+.+-
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3457899999999999999999988763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.88  E-value=0.04  Score=51.26  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=26.6

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      -...+.|++.|.+|||||+..+.++.++...
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            3456789999999999999999999987643

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.88  E-value=0.089  Score=47.03  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+|+.....++.-|--.  -+.....+..+....+++.|++|+|||+.++.+.+.+.
T Consensus        28 ~~k~~p~~~~~i~g~~~~--~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           28 VEKYRPKNLDEVTAQDHA--VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HHHTCCSSTTTCCSCCTT--HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHhhCCHHH--HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445654444443322111  13344445555434599999999999999999999875

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=93.80  E-value=0.027  Score=50.78  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=26.5

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .....+++|+|++|+|||..++.+.+.+..
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999998754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.80  E-value=0.041  Score=47.51  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=23.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+..|++.|++|+|||+.++.+...+
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence            45689999999999999999988775

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=93.75  E-value=0.07  Score=47.03  Aligned_cols=29  Identities=21%  Similarity=0.264  Sum_probs=25.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .....|++.|++|+|||..++.+.+.+..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45568999999999999999999998865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.74  E-value=0.042  Score=45.64  Aligned_cols=27  Identities=26%  Similarity=0.508  Sum_probs=23.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...|+++|-+|||||+.++.+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999999988754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=93.73  E-value=0.034  Score=46.72  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+++|.+|||||+.++.+.+.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999987765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.73  E-value=0.036  Score=46.93  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ....|+|+|.||+|||+.+..+++.
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4578999999999999998887763

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=93.72  E-value=0.039  Score=45.44  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      +...|.|+|.+|||||+.++.+.+.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4567999999999999999988775

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.72  E-value=0.043  Score=47.88  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|.|.|.||||||+.+|.+.+.|-
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            446899999999999999999987654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.71  E-value=0.094  Score=49.09  Aligned_cols=47  Identities=13%  Similarity=0.164  Sum_probs=36.5

Q ss_pred             CCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         34 SQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        34 ~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+-|++......+++.+.. -...+.|++.|.+|+|||+.++.+...+
T Consensus       146 ~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          146 CLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3456666666677777643 4567899999999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=93.71  E-value=0.026  Score=48.13  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=17.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH-HHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL-QYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il-~yL   80 (276)
                      ..+.|.++|.||||||+.++.+. ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45789999999999999999998 765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.70  E-value=0.045  Score=45.46  Aligned_cols=28  Identities=25%  Similarity=0.487  Sum_probs=24.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +..-|+++|-+|||||+.++.+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3567999999999999999999988754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.69  E-value=0.028  Score=50.59  Aligned_cols=30  Identities=33%  Similarity=0.479  Sum_probs=26.3

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ....+.++|+|++|+|||+.++.+.+.+..
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            556789999999999999999999988754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=93.66  E-value=0.096  Score=45.36  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.-.|+++|.+|||||+.++.+.+.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            355679999999999999999998876

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.64  E-value=0.061  Score=53.07  Aligned_cols=48  Identities=13%  Similarity=0.201  Sum_probs=33.3

Q ss_pred             CCCCchhH---HHHHHHHHhH--hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         34 SQEPHVFA---LAEAAYSSLQ--NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        34 ~~pPHifa---vA~~Ay~~m~--~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+||-+.   |+. ..+...  ...+...|+++|-||||||+.++.+-+.|..
T Consensus       370 ~~~p~w~~~~eVsr-~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          370 AHIPEWFSYPEVVK-ILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             CCCCTTTSCHHHHH-HHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCcccccccccH-HHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            34555444   543 333322  3445578999999999999999999998774

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=93.63  E-value=0.059  Score=49.44  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      .+...|.+.|++|||||++++.+..++...++
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g  158 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF  158 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            45789999999999999999999998875443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=93.63  E-value=0.043  Score=45.34  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|.|+|.+|||||+.++.+-+.|
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            68999999999999999988765

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.62  E-value=0.037  Score=46.81  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|++.|.+|||||+.++.+.+.|-
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34699999999999999999988874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.57  E-value=0.051  Score=49.52  Aligned_cols=35  Identities=14%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             HHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         46 AYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        46 Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +++.+. .-...+.+.|.|+||||||+.++.++.++
T Consensus       115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            444443 33567899999999999999999999998

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.56  E-value=0.054  Score=46.78  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+...|-|.|.+|||||+.++.+...+-
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3557789999999999999999988763

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.52  E-value=0.029  Score=46.90  Aligned_cols=26  Identities=31%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|.|+|.||||||+.++.+.+.+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            45678999999999999999887764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=93.51  E-value=0.085  Score=50.02  Aligned_cols=41  Identities=24%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             HHHHHHHhHhcCC-CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         43 AEAAYSSLQNLDV-NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        43 A~~Ay~~m~~~~~-~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |..+.+.+..... ...++|.|++|+|||+.++.+.+.+...
T Consensus       116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~  157 (440)
T 2z4s_A          116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN  157 (440)
T ss_dssp             HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            3444445544433 6789999999999999999999988654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.51  E-value=0.057  Score=44.46  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      +...|+++|.+|||||+.++.+-+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998887

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.50  E-value=0.069  Score=46.32  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+..|+|.|++|+|||..++.+-+.+.
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            457899999999999999999887754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.49  E-value=0.05  Score=45.10  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +...|+++|.+|||||+.++.+.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34579999999999999999998775

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=93.48  E-value=0.041  Score=46.09  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.|.|+||||||+.++.+.-.+.
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            568999999999999999998877543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=93.45  E-value=0.064  Score=47.11  Aligned_cols=36  Identities=22%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+...++...++++|++|+|||+.++.+.+.+.
T Consensus        28 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             HHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence            344444455555699999999999999999998873

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=93.44  E-value=0.046  Score=47.52  Aligned_cols=27  Identities=26%  Similarity=0.246  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.+.-.+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356889999999999999888776554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.43  E-value=0.066  Score=48.54  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=25.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.+.|.+.|.||||||+.++.+..++...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~  129 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL  129 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            46789999999999999999999888754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.41  E-value=0.025  Score=52.36  Aligned_cols=27  Identities=33%  Similarity=0.564  Sum_probs=23.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.|+++|+||||||+..+.++.++-
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            457899999999999999999988754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=93.40  E-value=0.062  Score=44.81  Aligned_cols=29  Identities=21%  Similarity=0.161  Sum_probs=25.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.+.+++.|++|||||+.++.+...++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~   50 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD   50 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            56789999999999999999999777643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.35  E-value=0.032  Score=47.82  Aligned_cols=26  Identities=27%  Similarity=0.426  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .+...|.|.|.+|||||+.++.+..+
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34678999999999999998887665

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=93.34  E-value=0.052  Score=47.88  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|+|.|.+|||||+.++.+.+.|
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999998854

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=93.33  E-value=0.22  Score=45.60  Aligned_cols=27  Identities=26%  Similarity=0.287  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....|++.|++|+|||..++.+.+.+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            457899999999999999999988765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.31  E-value=0.088  Score=47.59  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=23.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...++++|++|+|||..++.+.+.+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            37999999999999999999999875

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=93.29  E-value=0.062  Score=47.38  Aligned_cols=26  Identities=35%  Similarity=0.405  Sum_probs=23.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+++.|++|+|||+.++.+.+.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            36899999999999999999999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=93.28  E-value=0.051  Score=45.75  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.|.+.|.+|||||+..+.+...+.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4688999999999999999998876

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=93.27  E-value=0.058  Score=47.45  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=23.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+..|++.|++|+|||..++.+.+.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            468999999999999999999888753

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.26  E-value=0.04  Score=53.77  Aligned_cols=46  Identities=11%  Similarity=0.110  Sum_probs=34.9

Q ss_pred             CCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         35 QEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        35 ~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+|+|..+..++|...  .++...|+++|-||||||+.++.+-+-|-.
T Consensus       376 ~rpeV~~vLr~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          376 SYPEVVKILRESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             SCHHHHHHHHHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cChhhHHHHHHhcccc--cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4567766666665322  234468999999999999999999999875

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.26  E-value=0.023  Score=45.11  Aligned_cols=26  Identities=12%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+..|++.|++|+|||..++.+-+.
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            44567999999999999988876554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.25  E-value=0.073  Score=48.15  Aligned_cols=47  Identities=15%  Similarity=0.114  Sum_probs=33.8

Q ss_pred             chhHHHHHHHHHhHhc-----------CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         38 HVFALAEAAYSSLQNL-----------DVNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        38 HifavA~~Ay~~m~~~-----------~~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .+..+..+....++..           .+.+.|.+.|.+|||||++++.+..++...+
T Consensus        71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~  128 (302)
T 3b9q_A           71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG  128 (302)
T ss_dssp             HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            4555555555555422           2457899999999999999999998876533

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.25  E-value=0.057  Score=47.23  Aligned_cols=26  Identities=23%  Similarity=0.402  Sum_probs=23.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..|++.|-+|||||+.++.+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L~~   30 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILSK   30 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999998653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.22  E-value=0.052  Score=47.50  Aligned_cols=24  Identities=29%  Similarity=0.238  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|+|+|.+|||||+.++.+.+.+-
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            489999999999999999987753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=93.20  E-value=0.093  Score=45.76  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....|++.|++|+|||..++.+.+.+
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            467789999999999999999987765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.17  E-value=0.049  Score=44.91  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..-|++.|-+|||||+.++.+.+.|
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999887

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.09  E-value=0.051  Score=45.75  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .|+++|.+|||||+.++.+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999998876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.09  E-value=0.069  Score=45.05  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .--|++.|.+|||||+.++.+.+.|-
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35699999999999999999988763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.08  E-value=0.057  Score=46.52  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +..+++.|++|+|||+.++.+...+
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999988775

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=92.83  E-value=0.049  Score=45.20  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=19.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~   78 (276)
                      .|.|+|.+|||||+.++.+.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999887

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.81  E-value=0.065  Score=45.63  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|++.|.+|||||+.++.+.+.|-
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999988763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.66  E-value=0.054  Score=49.04  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..++|+|.+|||||+..+.++...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            578999999999999999988763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.57  E-value=0.08  Score=47.26  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+..|++.|++|+|||..++.+...+
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            456789999999999999999888765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.55  E-value=0.14  Score=44.91  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=26.9

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+...++...+++.|++|+|||+.++.+.+.+.
T Consensus        33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            44444444434499999999999999999998874

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=92.55  E-value=0.13  Score=45.93  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....|++.|++|+|||..++.+.+.+
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            455789999999999999999987764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=92.53  E-value=0.06  Score=44.76  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             eEEEeCCCCCChhHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~   78 (276)
                      .|.+.|.+|||||+.++.+..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988866

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.53  E-value=0.067  Score=44.96  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~   78 (276)
                      -.|+|+|.+|||||+.++.+-+
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998866

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=92.51  E-value=0.12  Score=45.68  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+..++++|++|+|||..++.+.+.+.
T Consensus        36 ~~~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           36 EPLEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             SCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999987653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=92.49  E-value=0.074  Score=45.43  Aligned_cols=40  Identities=20%  Similarity=0.208  Sum_probs=28.7

Q ss_pred             CCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         36 EPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        36 pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .|.-|.- ..+++.+   ...+.+.+.|++|||||+..|.+.-.
T Consensus         6 ~pk~~g~-~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A            6 RPKTLGQ-KHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CCCSHHH-HHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             ccCCHhH-HHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3454532 2455555   34578999999999999999988766

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=92.47  E-value=0.076  Score=46.14  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.+...+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456889999999999999988876654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=92.46  E-value=0.078  Score=46.32  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+ +.+.+.|+||||||+..|.+.-.+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            45 788999999999999988876654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=92.42  E-value=0.11  Score=48.35  Aligned_cols=46  Identities=15%  Similarity=0.125  Sum_probs=33.6

Q ss_pred             chhHHHHHHHHHhHhc-----------CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         38 HVFALAEAAYSSLQNL-----------DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        38 HifavA~~Ay~~m~~~-----------~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+..+..+....++..           ...+.|.+.|.+|||||++++.+..++...
T Consensus       128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~  184 (359)
T 2og2_A          128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE  184 (359)
T ss_dssp             HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence            3555555555555432           245789999999999999999999988653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=92.39  E-value=0.075  Score=46.54  Aligned_cols=27  Identities=33%  Similarity=0.502  Sum_probs=22.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.|.|+||||||+..|.+.-.+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            567899999999999999888776643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.37  E-value=0.11  Score=47.65  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .|-|.|.||||||+.++.+...+..
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            7889999999999999999888753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=92.36  E-value=0.08  Score=46.33  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.+.|.|+||||||+..|.+.-.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999988775

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=92.33  E-value=0.17  Score=45.80  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....+++.|++|+|||+.++.+...+
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            344789999999999999999999887

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=92.30  E-value=0.081  Score=46.05  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..|.+.-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4568899999999999999888766543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=92.28  E-value=0.053  Score=48.66  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-.|.|+|.||||||+.++.+.+.|-
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34689999999999999999988765

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=92.27  E-value=0.079  Score=47.41  Aligned_cols=27  Identities=19%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|++.|++|+|||..++.+.+.+.
T Consensus        44 ~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           44 GIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCceEEEECCCCccHHHHHHHHHHhCc
Confidence            345699999999999999999888764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=92.26  E-value=0.083  Score=46.60  Aligned_cols=28  Identities=21%  Similarity=0.624  Sum_probs=24.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..|.+...+.
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4668999999999999999999887653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=92.24  E-value=0.055  Score=46.85  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+..|++.|++|+|||..++.+.+.+.
T Consensus        43 ~~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           43 IPKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            456799999999999999999888753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.21  E-value=0.11  Score=44.84  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=24.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +..-|++.|.+|||||+.++.+.+.|..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4568999999999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=92.20  E-value=0.084  Score=46.61  Aligned_cols=27  Identities=26%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|+||||||+..|.+.-.+
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999988776543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.19  E-value=0.087  Score=46.19  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +..|++.|++|+|||+.++.+...+
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHc
Confidence            4559999999999999999988775

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=92.19  E-value=0.09  Score=46.56  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .+.+.+.|.|+||||||+..|.+.-.
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45688999999999999999988775

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=92.15  E-value=0.13  Score=46.74  Aligned_cols=46  Identities=13%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHHhHhc--------CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         39 VFALAEAAYSSLQNL--------DVNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        39 ifavA~~Ay~~m~~~--------~~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      +..+..+....++..        .....|.+.|.+|+|||++++.+..++...+
T Consensus        79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g  132 (306)
T 1vma_A           79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG  132 (306)
T ss_dssp             HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence            666666666665532        2457899999999999999999999987543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=92.12  E-value=0.21  Score=45.21  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=27.0

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++-..+++++|+.|.|||+.++.+.+.|..
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            4456789999999999999999999998864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=92.11  E-value=0.074  Score=45.78  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=20.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.+.+.|+||||||+..|.+.-.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4578899999999999988876544

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=92.09  E-value=0.15  Score=43.57  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ++.+-+++...+..   .+.+++.|++|||||+....++
T Consensus        62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence            34445555555543   3689999999999998766543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.06  E-value=0.092  Score=45.91  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-.|.|.|.||||||+.++.+.+.|-
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999988763

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=92.05  E-value=0.13  Score=46.26  Aligned_cols=27  Identities=22%  Similarity=0.398  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+..|+|.||+|+|||..++.+-+..
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence            457789999999999999999887764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=92.03  E-value=0.085  Score=46.78  Aligned_cols=28  Identities=29%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|+||||||+..|.+.-.+.
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3567899999999999999888776653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=92.02  E-value=0.081  Score=47.01  Aligned_cols=28  Identities=14%  Similarity=0.303  Sum_probs=23.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..|.|.-.+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4668899999999999999888876653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=92.01  E-value=0.046  Score=53.18  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=22.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.|+++|.+|||||+..+.++.++
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34569999999999999999888776

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.01  E-value=0.13  Score=50.14  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=35.7

Q ss_pred             chhHHHHHHHHHhHhc---------CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         38 HVFALAEAAYSSLQNL---------DVNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        38 HifavA~~Ay~~m~~~---------~~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .+..+.......++..         ...+.|.|.|.+|||||+.++.|..++...+
T Consensus       266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~  321 (503)
T 2yhs_A          266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG  321 (503)
T ss_dssp             GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC
Confidence            4666666666665542         3467899999999999999999998886543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=91.98  E-value=0.087  Score=47.07  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=22.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|.|+||||||+..|.+.-.+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            356789999999999999988876654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=91.96  E-value=0.09  Score=46.21  Aligned_cols=26  Identities=27%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.+.|+||||||+..|.+.-.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999988876554

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=91.96  E-value=0.093  Score=46.51  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|.|+||||||+..|.+.-.+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            456889999999999999988776543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=91.96  E-value=0.13  Score=46.87  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+..|++.|++|+|||+.++.+-+.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=91.93  E-value=0.21  Score=45.03  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+++.|++|+|||..++.+.+.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999887

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.93  E-value=0.1  Score=45.16  Aligned_cols=27  Identities=26%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.-.|.|+|.+|||||+.++.+-+.|-
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345699999999999999999988764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=91.92  E-value=0.28  Score=49.26  Aligned_cols=65  Identities=14%  Similarity=0.047  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         16 LDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        16 l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.-|+.+..++++.....++.-.= ... +....++..+....+++.|++|+|||..++.+.+.+..
T Consensus       169 l~~~~~~l~~~~~~~~~d~~iGr~-~~i-~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          169 LENFTTNLNQLARVGGIDPLIGRE-KEL-ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             CCSSSCBHHHHHHTTCSCCCCSCH-HHH-HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHhHhHHHHHhcCCCCCccCCH-HHH-HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            444555555555544333322111 111 12334445567788999999999999999999988743

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=91.89  E-value=0.13  Score=43.98  Aligned_cols=27  Identities=26%  Similarity=0.465  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|++.|-+|||||+.++.+-+.|-
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345799999999999999999988864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=91.87  E-value=0.089  Score=44.43  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..|++.|.+|||||+.++.+-+.|
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=91.86  E-value=0.18  Score=42.09  Aligned_cols=35  Identities=23%  Similarity=0.167  Sum_probs=27.5

Q ss_pred             HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+....+.-.|++.|.+|+|||+.+..++..+.
T Consensus        29 ~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           29 NRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34444555667899999999999999988888753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=91.84  E-value=0.11  Score=43.10  Aligned_cols=25  Identities=16%  Similarity=0.001  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ...+.+++.|++|+|||+.++.+..
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998877

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=91.84  E-value=0.084  Score=45.58  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|.|++|||||+..|.+.-.+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999988876654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=91.82  E-value=0.087  Score=45.27  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=21.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.|.|++|||||+..|.+.-.+
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45788999999999999988776543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.79  E-value=0.11  Score=44.62  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..-|++.|.+|||||+.++.+.++|..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999999998864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=91.75  E-value=0.1  Score=46.11  Aligned_cols=27  Identities=15%  Similarity=0.476  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.+.-.+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            456789999999999999988876554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=91.68  E-value=0.16  Score=46.20  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             CCCceEEE--eCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVI--SGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIii--sGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.++|  +|++|+|||..++.+.+.+..
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~   78 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE   78 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence            46789999  999999999999999988754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.67  E-value=0.24  Score=46.86  Aligned_cols=29  Identities=38%  Similarity=0.584  Sum_probs=25.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      ..+++.|..|+|||..++.++.+|.....
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            48999999999999999999999987543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.66  E-value=0.13  Score=49.60  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=23.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....++++|++|+|||..++.+.+.+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34799999999999999999998876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.66  E-value=0.11  Score=45.88  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..|+++|.+|||||+.++.+.+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999998874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.63  E-value=0.11  Score=45.89  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|.|++|||||+..|.+.-.+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999888765543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=91.58  E-value=0.11  Score=47.65  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|++|+|||+.++.+-+.+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=91.54  E-value=0.11  Score=45.22  Aligned_cols=26  Identities=35%  Similarity=0.406  Sum_probs=21.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.+.|+||||||+..|.+.-.+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            55788999999999999988876554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=91.49  E-value=0.13  Score=45.38  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=26.7

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      -...+.++|.|++|+|||+.++.+.-.++..
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            3467899999999999999999998887754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.44  E-value=0.12  Score=45.97  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=23.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.+..|++.|++|+|||..++.+-+.+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998886

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=91.39  E-value=0.12  Score=43.98  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |++.|.+||||++-++.+.+.+-
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            88999999999999999988863

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=91.35  E-value=0.11  Score=46.00  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.|+||||||+..+.+...+..
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            4789999999999999998877543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=91.32  E-value=0.18  Score=45.94  Aligned_cols=30  Identities=20%  Similarity=0.326  Sum_probs=26.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ..+.|.+.|.+|+|||+++..+..+++..+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g  133 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG  133 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            356899999999999999999999988643

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=91.29  E-value=0.27  Score=45.77  Aligned_cols=41  Identities=20%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhH---hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         41 ALAEAAYSSLQ---NLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        41 avA~~Ay~~m~---~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++.+...+.   ..++-..|++.|.+|+|||+.++.+.+.|.
T Consensus         6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            34555555543   334445699999999999999998877664

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=91.29  E-value=0.14  Score=46.06  Aligned_cols=46  Identities=20%  Similarity=0.151  Sum_probs=33.6

Q ss_pred             CchhHHHHHHHHHhHh-------cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         37 PHVFALAEAAYSSLQN-------LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        37 PHifavA~~Ay~~m~~-------~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+..+.......++.       ..+.+.|++.|.+|+|||++++.+..++..
T Consensus        79 ~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A           79 ENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             TTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3455555555555431       235678999999999999999999998874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=91.28  E-value=0.13  Score=43.42  Aligned_cols=25  Identities=20%  Similarity=0.170  Sum_probs=22.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      +.+.+++.|++|||||+.++.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5678999999999999999888764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.28  E-value=0.05  Score=49.76  Aligned_cols=27  Identities=26%  Similarity=0.625  Sum_probs=23.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.+.|.+|||||+..+.++.++.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            346899999999999999998888754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=91.22  E-value=0.19  Score=41.84  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=25.2

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +......-.|++.|.+|+|||+.+..++..+.
T Consensus        24 ~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           24 ALRESGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            33334556899999999999999999888763

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.21  E-value=0.36  Score=45.99  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             HhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         49 SLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .++..+....+++.|++|+|||..++.+.+.+.
T Consensus       194 ~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            334446667899999999999999999998874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=91.17  E-value=0.17  Score=43.23  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+...|.|+|.+|||||+.++.+.+.|
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999888755

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=91.16  E-value=0.12  Score=45.37  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=21.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.+.|+||||||+..|.+.-.+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56788999999999999888776554

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.11  E-value=0.11  Score=45.10  Aligned_cols=29  Identities=24%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +..-|++.|.+|||||+.++.+.++|...
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            45679999999999999999999998643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.07  E-value=0.13  Score=48.23  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|+||||||+..|.|.-.+.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            3567899999999999999888766543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.06  E-value=0.16  Score=45.60  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|++|+|||..++.+.+.+
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            35689999999999999999988775

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=91.03  E-value=0.051  Score=49.42  Aligned_cols=29  Identities=24%  Similarity=0.437  Sum_probs=24.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.+.|.|+||||||+..|.++..+.-
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p  106 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYDI  106 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence            45689999999999999999998887643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=91.01  E-value=0.13  Score=45.19  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=22.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.+.|++|||||+..|.+.-.+.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            557889999999999999888776653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=91.00  E-value=0.14  Score=46.95  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=24.9

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |.....+..|+|+|.+|||||+.+..+.+.+-
T Consensus         4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            4 ISKASLPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             ---CCCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cccCCCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            33444567899999999999999999988864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=90.95  E-value=0.13  Score=45.96  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.+.+.|.|+||||||+..|.+.-.+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            567899999999999999888766543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=90.94  E-value=0.12  Score=47.40  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ...++|+|+||+|||+.+..+++.
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            579999999999999998888774

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=90.86  E-value=0.15  Score=42.89  Aligned_cols=53  Identities=19%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcchHHHHHHH--hHHHHHHhcCC
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILE--ANTILEAFGNA  108 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~~~~i~~--a~~ILeaFGnA  108 (276)
                      ..-.|.++|-+|||||+.++.+-+.+-..--+ .+.+..++..  ...|.+.||..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid-~D~~~~~~~~~~~~~i~~~fG~~   65 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVN-VDRIGHEVLEEVKEKLVELFGGS   65 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEE-HHHHHHHHHHHTHHHHHHHHCGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEE-CcHHHHHHHHHHHHHHHHHhChh
Confidence            34568899999999999999988874210001 1222222222  23477788754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.84  E-value=0.14  Score=42.86  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +..|.++|.+|||||+.++.+-+.|
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3469999999999999999887765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=90.84  E-value=0.14  Score=41.55  Aligned_cols=25  Identities=32%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+|.|++|||||+..+.|.--|.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            4789999999999998877665543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=90.73  E-value=0.15  Score=43.70  Aligned_cols=26  Identities=35%  Similarity=0.494  Sum_probs=23.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .-|++.|-+|||||+.++.+.++|..
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46999999999999999999998764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=90.65  E-value=0.11  Score=47.48  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ....++|+|+||+|||+.+..+++
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            458899999999999998876655

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=90.62  E-value=0.14  Score=44.12  Aligned_cols=27  Identities=33%  Similarity=0.438  Sum_probs=22.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|+|+|.||+|||+.+..+.+...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            457899999999999998877766543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=90.61  E-value=0.18  Score=42.53  Aligned_cols=29  Identities=24%  Similarity=0.264  Sum_probs=24.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..+.+++.|++|+|||+.+..++..++..
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~   50 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM   50 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            56789999999999999988877766643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=90.60  E-value=0.12  Score=47.50  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=23.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.|.|+||||||+.++.+...+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            578999999999999999999888653

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.57  E-value=0.16  Score=44.38  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=24.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +..-|++.|.+|||||+.++.+.++|..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3568999999999999999999998765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=90.51  E-value=0.11  Score=48.78  Aligned_cols=27  Identities=26%  Similarity=0.172  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .....|+++|-||||||+.++.+.+.+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            456789999999999999999987765

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=90.50  E-value=0.21  Score=43.31  Aligned_cols=30  Identities=23%  Similarity=0.364  Sum_probs=25.7

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+..-|++.|-+|||||+.++.+.+.|..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345678999999999999999999998865

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.45  E-value=0.14  Score=43.79  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=23.1

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..-|++.|-.|||||+.++.+.++|.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            35699999999999999999999873

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.42  E-value=0.18  Score=45.57  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|++|+|||..++.+.+.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            34789999999999999999999886

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=90.42  E-value=0.14  Score=45.31  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|+||||||+..|.+.-.+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999988877654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=90.35  E-value=0.15  Score=47.44  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.|.-.+
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            355788999999999999988776654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=90.30  E-value=0.22  Score=42.90  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.--|++.|.+||||++-++.+.+.+-
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3456788899999999999999988863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=90.28  E-value=0.23  Score=48.37  Aligned_cols=29  Identities=28%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ......+++.|++|+|||+.+|.+-..+.
T Consensus       105 ~~~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          105 SLKGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            33567899999999999999999988873

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=90.17  E-value=0.18  Score=46.85  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.|.-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            356789999999999999988876554

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=90.09  E-value=0.18  Score=47.02  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.|.|+||||||+..|.+.-.+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            456788999999999999888776554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=90.05  E-value=0.14  Score=46.01  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.|.|++|||||+..|.+.-.+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356789999999999999988876554

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=90.02  E-value=0.19  Score=46.79  Aligned_cols=27  Identities=22%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.|.-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            356789999999999999988776554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=89.98  E-value=0.17  Score=46.88  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=22.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -.|+|+|.||||||+.++.+.+.|-
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4799999999999999999998874

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=89.96  E-value=0.21  Score=45.83  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|++.|++|+|||..++.+.+.+-
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            346799999999999999999988763

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=89.96  E-value=0.17  Score=44.76  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +..+++.|.+|+|||+.+|.+...+
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHc
Confidence            3459999999999999999887764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=89.94  E-value=0.17  Score=43.55  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..-|++.|.+|||||+.++.+.++|..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            467999999999999999999888753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=89.92  E-value=0.19  Score=46.73  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.+.|+||||||+..|.|.-.+
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55789999999999999988776553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=89.87  E-value=0.18  Score=46.46  Aligned_cols=43  Identities=26%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|.....|...++.-.+.|.+.|.|.+|||||+..+.|...+.
T Consensus        54 ~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           54 PFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             EECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3433346788887777899999999999999999999998854

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=89.85  E-value=0.22  Score=43.69  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=23.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.+.++|.|.+|||||+.++.++-.++
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            568899999999999999998887654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=89.73  E-value=0.2  Score=46.73  Aligned_cols=27  Identities=33%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.|.-.+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            456789999999999999988776554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=89.63  E-value=0.28  Score=43.99  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             HhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         49 SLQNLDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .+...-..+.+.+.|.||+|||+..+.++
T Consensus       158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          158 ELVDYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence            34444456889999999999999999888

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=89.51  E-value=0.21  Score=47.48  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=33.0

Q ss_pred             HHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         44 EAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        44 ~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..|...++.-.+.|.+.|.|.||+|||+..+.|..++.
T Consensus       145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            45788886677889999999999999999999998864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=89.51  E-value=0.21  Score=46.62  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=21.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.+.|+||||||+..|.|.-.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            45788999999999999888776543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=89.47  E-value=0.18  Score=44.67  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      +.--|.|+|.+|||||+.++.+-+
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998875

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=89.31  E-value=0.34  Score=48.34  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=24.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +...|+++|-+|||||+.++.+-+.|.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~   77 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV   77 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            556899999999999999999999884

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=89.16  E-value=0.26  Score=45.41  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|+|.|++|+|||..++.+.+.+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            45899999999999999999987664

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=89.11  E-value=0.34  Score=43.36  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ..+.|.+.|.+|+|||+.++.+...++..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~  126 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG  126 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999887643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=89.11  E-value=0.21  Score=46.88  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..|.|.-.+.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            4568899999999999999999887654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=89.07  E-value=0.27  Score=45.37  Aligned_cols=28  Identities=32%  Similarity=0.369  Sum_probs=24.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+..+++.|.||||||+.++.++..+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~   61 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYM   61 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5667889999999999999999877654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=88.92  E-value=0.17  Score=46.88  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.|.-.+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            355789999999999999988776553

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=88.89  E-value=0.55  Score=44.59  Aligned_cols=46  Identities=20%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             CchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         37 PHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        37 PHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |.+....-+|..-+..-.+-|.+.|.|.||+|||+.++.|.+++..
T Consensus       155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence            4577888899999999999999999999999999999999998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=88.82  E-value=0.57  Score=44.60  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=25.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ...|++.|.+|+|||+++..+..+|...+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G  125 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG  125 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999987643

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=88.74  E-value=0.29  Score=47.49  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=24.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|++.|-+|||||+.++.+.++|-
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999999884

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=88.61  E-value=0.41  Score=42.22  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=21.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.++|+|+.|.|||..++.+.+.+
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc
Confidence            799999999999999999988763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=88.61  E-value=0.43  Score=43.59  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             HHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         44 EAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        44 ~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+.+.+. ...+...+.+.|.+|||||+..+.++..+..
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            44555553 3457789999999999999999999988754

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=88.59  E-value=0.24  Score=42.87  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             HHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         45 AAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        45 ~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+++.+...- +.-+|++.|..|+|||..+..+.+++
T Consensus        46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4455555542 23479999999999999999988886

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=88.58  E-value=0.63  Score=47.35  Aligned_cols=59  Identities=25%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             ecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHH
Q psy17386         10 VNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        10 vNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      ++||..++ +++...+......  .+|-.+.   +.+....+..  ++.+++.|++|||||+....+
T Consensus        71 ~~~f~~~~-l~~~~~~~l~~r~--~lP~~~q---~~~i~~~l~~--~~~vii~gpTGSGKTtllp~l  129 (773)
T 2xau_A           71 INPFTGRE-FTPKYVDILKIRR--ELPVHAQ---RDEFLKLYQN--NQIMVFVGETGSGKTTQIPQF  129 (773)
T ss_dssp             BCTTTCSB-CCHHHHHHHHHHT--TSGGGGG---HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHH
T ss_pred             CCCccccC-CCHHHHHHHHHhh--cCChHHH---HHHHHHHHhC--CCeEEEECCCCCCHHHHHHHH
Confidence            56776665 3454444443222  4554443   2333344443  467999999999999965555

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=88.57  E-value=0.27  Score=40.35  Aligned_cols=21  Identities=29%  Similarity=0.484  Sum_probs=17.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~   78 (276)
                      .|++.|.+|+|||+..+.++.
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~   27 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTR   27 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            478999999999998776654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.54  E-value=0.23  Score=45.58  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..|+|+|.+|||||+.++.+.+.+-
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999988863

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=88.40  E-value=0.21  Score=45.90  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -.|+|+|.||||||..++.+.+.+-
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCc
Confidence            4689999999999999999988764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=88.23  E-value=0.58  Score=44.73  Aligned_cols=29  Identities=24%  Similarity=0.332  Sum_probs=25.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+..|++.|.+|+|||+++..+..+|...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            36789999999999999999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=88.20  E-value=0.23  Score=47.58  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      ...+.+.|.|.+|||||+.+|.+..++.-.++
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            46788999999999999999999998764433

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=88.18  E-value=0.53  Score=41.51  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=22.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.++|+|+.|.|||..++.+.+.+
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            699999999999999999988875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=88.04  E-value=0.26  Score=40.36  Aligned_cols=21  Identities=29%  Similarity=0.484  Sum_probs=17.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~   78 (276)
                      .|++.|.+|+|||+..+.+..
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~   51 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTR   51 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            578999999999998776543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=88.03  E-value=0.29  Score=42.00  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|+++|.+||||++.++.+.+.+
T Consensus        13 II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           13 VLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHc
Confidence            68899999999999999998855

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=87.92  E-value=0.35  Score=46.02  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .....|++.|-+|||||+.++.+.++|.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456899999999999999999998875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=87.87  E-value=0.51  Score=47.51  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ++..+....+++.|++|+|||..++.+.+.+.
T Consensus       195 ~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence            34446667899999999999999999998874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=87.80  E-value=0.17  Score=46.81  Aligned_cols=27  Identities=33%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|+||||||+..|.|.-.+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            356789999999999999988776553

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=87.79  E-value=0.67  Score=43.82  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|++.|++|+|||..++.+-+.+-
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            46899999999999999999998874

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=87.76  E-value=0.33  Score=37.77  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.1

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+..+.++
T Consensus         7 ~i~v~G~~~~GKssl~~~l~   26 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999877655

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=87.70  E-value=0.28  Score=41.39  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=22.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -.|.|+|++|||||+.++.+-+.|-
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999888764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=87.69  E-value=0.24  Score=48.50  Aligned_cols=29  Identities=17%  Similarity=0.416  Sum_probs=25.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.+.+.|+||||||+..|.+...+.-
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            45688999999999999999999887643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=87.63  E-value=0.33  Score=46.81  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+..|+|.|++|+|||..++.+-+.+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            567789999999999999999886654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=87.58  E-value=0.24  Score=48.70  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+++.|++|+|||+.++.+...+.
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            36899999999999999999998764

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=87.53  E-value=0.29  Score=46.35  Aligned_cols=24  Identities=29%  Similarity=0.446  Sum_probs=21.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+|+|.||||||+.++.+.+.+-
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             EEEEECcchhhHHHHHHHHHHHCC
Confidence            589999999999999999988874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=87.06  E-value=0.39  Score=37.19  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         3 ki~v~G~~~~GKSsli~~l~   22 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLL   22 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999766655

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=87.05  E-value=0.43  Score=46.14  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.+.|.|+||||||+..+.+.-.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~p   55 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALIP   55 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence            78999999999999999988877643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=86.83  E-value=0.55  Score=42.19  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=25.3

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ...|+++|.+|+|||+.+..+..+++..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g  126 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG  126 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            56899999999999999999999987643

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=86.80  E-value=0.47  Score=45.04  Aligned_cols=30  Identities=23%  Similarity=0.255  Sum_probs=26.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ..+.|.+.|.+|+|||+++..+..++...+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g  126 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG  126 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999988643

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=86.72  E-value=0.34  Score=46.80  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             HHHHhHh--cCCCceEEEeCCCCCChhHHHHHH-HHHHH
Q psy17386         46 AYSSLQN--LDVNQSCVISGESGAGKTETTKFI-LQYLC   81 (276)
Q Consensus        46 Ay~~m~~--~~~~QsIiisGeSGsGKTe~~k~i-l~yL~   81 (276)
                      ++..+..  -.+.+.+.+.|++|||||+.++.+ +.-+.
T Consensus        27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4555544  246789999999999999999986 34443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=86.71  E-value=0.31  Score=39.40  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=16.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+..+.++
T Consensus         4 kv~ivG~~gvGKStLl~~l~   23 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLM   23 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999876654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=86.70  E-value=0.22  Score=48.73  Aligned_cols=28  Identities=21%  Similarity=0.489  Sum_probs=24.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|+||||||+..|.+...+.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            4568899999999999999999888754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=86.66  E-value=0.37  Score=37.17  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+....++
T Consensus         5 ~i~v~G~~~~GKssl~~~l~   24 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999765554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=86.65  E-value=0.4  Score=46.73  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999998887654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=86.65  E-value=0.41  Score=45.28  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=23.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|++.|++|+|||..++.+.+.+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998876

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=86.60  E-value=0.43  Score=36.95  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         6 ~i~v~G~~~~GKssl~~~l~   25 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999765544

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=86.54  E-value=0.38  Score=41.47  Aligned_cols=26  Identities=27%  Similarity=0.206  Sum_probs=22.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-.|.|+|.+|||||+.++.+-+.|-
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg   39 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG   39 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence            35799999999999999999888764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=86.43  E-value=0.38  Score=44.17  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.|.|++|||||+.++.+.-..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56889999999999999999887764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=86.35  E-value=0.45  Score=42.52  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.+.+.|+||||||+..+.+...
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc
Confidence            4578999999999999987766543

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=86.27  E-value=0.5  Score=43.92  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             chhHH-HHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFAL-AEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 Hifav-A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||.- +.......+..+.+-+|+..|.+|||||.++
T Consensus        66 ~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM  102 (360)
T 1ry6_A           66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM  102 (360)
T ss_dssp             HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence            45552 3333445555678889999999999999975

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=86.21  E-value=0.71  Score=41.55  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=27.6

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.+...++..++++.|+.|.|||+.++.+.+-
T Consensus         8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~   41 (305)
T 2gno_A            8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY   41 (305)
T ss_dssp             HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4455555555789999999999999999998875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=86.19  E-value=0.42  Score=37.84  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=17.0

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+..+.+.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~   24 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999776654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=86.17  E-value=0.36  Score=47.53  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=24.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|+||||||+..|.++..+.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            4568999999999999999999887764

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=86.14  E-value=0.56  Score=39.37  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |+|-|--|||||+-++.+.++|...
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~   27 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKR   27 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            7899999999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=86.14  E-value=0.46  Score=36.90  Aligned_cols=20  Identities=25%  Similarity=0.385  Sum_probs=16.5

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999766553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=86.01  E-value=0.44  Score=38.86  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=17.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .+.=.|++.|.+|+|||...+.+.
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~   44 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLK   44 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            334479999999999999766554

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=86.00  E-value=0.76  Score=45.32  Aligned_cols=28  Identities=39%  Similarity=0.515  Sum_probs=25.3

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +..++++|..|+|||++...++..|...
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~  191 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALIQM  191 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=85.98  E-value=0.48  Score=36.62  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=16.4

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+....++
T Consensus         5 ~i~v~G~~~~GKSsli~~l~   24 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999755444

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=85.88  E-value=0.48  Score=37.38  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=17.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~   29 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYV   29 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999776654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=85.84  E-value=0.79  Score=45.01  Aligned_cols=30  Identities=30%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .++.++++|..|+|||+.++.+++.+....
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g  232 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAESLG  232 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            457899999999999999999999887643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=85.83  E-value=0.49  Score=36.72  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||...+.++
T Consensus         5 ki~v~G~~~~GKssli~~l~   24 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999766554

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=85.82  E-value=0.45  Score=38.09  Aligned_cols=21  Identities=14%  Similarity=0.245  Sum_probs=17.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      -.|++.|.+|+|||+..+.++
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~   28 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALT   28 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999877664

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=85.78  E-value=0.56  Score=48.04  Aligned_cols=33  Identities=24%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+..+....+++.|++|+|||..++.+.+.+..
T Consensus       185 ~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          185 ILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             HHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            334566678999999999999999999998854

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=85.69  E-value=1  Score=40.08  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=28.5

Q ss_pred             HHHHHHHhHhcC-C-CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         43 AEAAYSSLQNLD-V-NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        43 A~~Ay~~m~~~~-~-~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+....+... . .-+|++.|.+|+|||..++.+.+++
T Consensus        89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            344455555554 2 3589999999999999999888863

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=85.65  E-value=0.69  Score=42.84  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        89 l~G~n~tifAYGqTGSGKTyTm  110 (354)
T 3gbj_A           89 FDGYNACIFAYGQTGSGKSYTM  110 (354)
T ss_dssp             HTTCCEEEEEEECTTSSHHHHH
T ss_pred             hCCceeEEEeeCCCCCCCceEE
Confidence            4678999999999999999985

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=85.60  E-value=0.58  Score=41.70  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+++.|++|+|||..++.+-+.+
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            479999999999999999887765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=85.56  E-value=0.5  Score=36.86  Aligned_cols=20  Identities=30%  Similarity=0.278  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         8 ~i~v~G~~~~GKssli~~l~   27 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999765544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=85.50  E-value=0.53  Score=43.68  Aligned_cols=26  Identities=23%  Similarity=0.440  Sum_probs=21.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.+.|.||+|||+..+.++-.+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            56789999999999999888776543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=85.48  E-value=0.52  Score=36.71  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||...+.++
T Consensus         8 ~i~v~G~~~~GKSsli~~l~   27 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFV   27 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            48999999999999766653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=85.47  E-value=0.71  Score=38.71  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=20.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.+++.|++|+|||..+..++..
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5688999999999999988766544

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=85.46  E-value=0.88  Score=45.79  Aligned_cols=24  Identities=29%  Similarity=0.510  Sum_probs=22.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ++++.|++|+|||+.++.+-+.+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            699999999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=85.45  E-value=0.38  Score=44.46  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....|+|+|.+|||||..++.+.+.|-
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            445899999999999999999988774

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=85.35  E-value=0.61  Score=44.91  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+..|++.|++|+|||..+|.+...+
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45779999999999999999887764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=85.33  E-value=0.52  Score=37.98  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=17.6

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            379999999999999766654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=85.21  E-value=0.51  Score=46.80  Aligned_cols=28  Identities=21%  Similarity=0.228  Sum_probs=23.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|+||||||+..|.+.-.+.
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4678999999999999999888876543

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=85.20  E-value=0.7  Score=42.67  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        91 l~G~N~tifAYGQTGSGKTyTM  112 (344)
T 3dc4_A           91 LEGFQCTALAYGQTGTGKSYSM  112 (344)
T ss_dssp             HHTCCEEEEEESSTTSSHHHHH
T ss_pred             hCCCceEEEEecCCCCCCCeEE
Confidence            3578999999999999999986

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=85.19  E-value=0.7  Score=39.42  Aligned_cols=28  Identities=32%  Similarity=0.349  Sum_probs=24.8

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.-.++++|..|+|||+.+..+..+|+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4457788999999999999999999887

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=85.18  E-value=0.49  Score=46.16  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.+.|++|||||+..|.+.-.+.
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4567889999999999999988876543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=85.18  E-value=0.54  Score=37.04  Aligned_cols=20  Identities=20%  Similarity=0.478  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         9 ~i~v~G~~~~GKSsli~~l~   28 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999766553

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=85.08  E-value=0.74  Score=42.12  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        74 l~G~n~tifAYGqTGSGKTyTm   95 (325)
T 1bg2_A           74 LEGYNGTIFAYGQTSSGKTHTM   95 (325)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             hCCCeEEEEEECCCCCCCceEe
Confidence            3678999999999999999985

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=85.00  E-value=0.59  Score=38.44  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=17.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .+.=.|++.|.+|+|||.....++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~   28 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLL   28 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            344579999999999999766554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=85.00  E-value=0.48  Score=37.30  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=17.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~   78 (276)
                      =.|++.|.+|+|||.....++.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999997665543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=84.99  E-value=0.21  Score=43.39  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=23.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +..-|++.|-.|||||+.++.+.++|.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456799999999999999999888873

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=84.97  E-value=0.53  Score=36.64  Aligned_cols=20  Identities=20%  Similarity=0.361  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFV   24 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999766554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=84.95  E-value=0.52  Score=44.83  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CCCce--EEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQS--CVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~Qs--IiisGeSGsGKTe~~k~il~y   79 (276)
                      .....  |.|.|+||||||+..+.++..
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            45566  899999999999998887654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=84.93  E-value=0.96  Score=46.28  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=23.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++|.|++|+|||+.++.+-+.+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5899999999999999999999874

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=84.89  E-value=0.23  Score=48.83  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=24.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.+.+.|+||||||+..+.++..+.-
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence            45689999999999999999988877643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=84.76  E-value=0.61  Score=39.47  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=22.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-|+|-|--|||||+-++.+.++|.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3589999999999999999999984

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=84.68  E-value=0.69  Score=42.97  Aligned_cols=22  Identities=36%  Similarity=0.367  Sum_probs=19.5

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus       101 l~G~N~tifAYGQTGSGKTyTM  122 (359)
T 3nwn_A          101 LDGYNGTIMCYGQTGAGKTYTM  122 (359)
T ss_dssp             HTTCCEEEEEEESTTSSHHHHH
T ss_pred             hCCCCEEEEEeCCCCCCccEEe
Confidence            3577999999999999999975

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=84.67  E-value=0.6  Score=36.23  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         8 ~i~v~G~~~~GKssli~~l~   27 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999765554

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=84.62  E-value=0.6  Score=36.67  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=17.0

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||...+.++
T Consensus        17 ~i~v~G~~~~GKSsli~~l~   36 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFT   36 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            59999999999999766654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=84.62  E-value=0.77  Score=39.66  Aligned_cols=27  Identities=30%  Similarity=0.139  Sum_probs=20.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +..-++++|+.|+|||+.+..++.-+.
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~   37 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLE   37 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            457899999999999998765555443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=84.58  E-value=0.55  Score=37.65  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.1

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ...|++.|.+|+|||+..+.+.
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~   25 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALA   25 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999766654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=84.53  E-value=0.74  Score=43.68  Aligned_cols=46  Identities=15%  Similarity=0.210  Sum_probs=34.1

Q ss_pred             chhHHHHHHHHHhHhc---------CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         38 HVFALAEAAYSSLQNL---------DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        38 HifavA~~Ay~~m~~~---------~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++..+.......++..         .....|++.|.+|+|||+++-.+..+|+..
T Consensus        73 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           73 EFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             TTHHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4555555555555432         235689999999999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=84.47  E-value=0.54  Score=36.61  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         5 ~i~v~G~~~~GKssli~~l~   24 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            48999999999999766654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=84.45  E-value=0.57  Score=36.72  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=16.5

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         6 ki~i~G~~~vGKSsl~~~l~   25 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFA   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHh
Confidence            58999999999999765543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=84.43  E-value=0.43  Score=42.78  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      +=.|++.|++|+|||+..+.+..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            44679999999999999888654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=84.34  E-value=0.63  Score=36.12  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=16.4

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         3 i~~~G~~~~GKssl~~~l~   21 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLK   21 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999876654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=84.33  E-value=0.63  Score=36.32  Aligned_cols=20  Identities=35%  Similarity=0.376  Sum_probs=16.8

Q ss_pred             ceEEEeCCCCCChhHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~i   76 (276)
                      =.|++.|.+|+|||.....+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l   27 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRL   27 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            45999999999999976655

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=84.31  E-value=0.6  Score=46.85  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -++++.|++|+|||+.++.+-+.+
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh
Confidence            479999999999999999998887

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=84.29  E-value=0.63  Score=36.83  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=17.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~   39 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            359999999999999765554

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=84.29  E-value=0.84  Score=42.03  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        80 l~G~n~tifAYGqTGSGKTyTm  101 (344)
T 4a14_A           80 FEGFNATVFAYGQTGSGKTYTM  101 (344)
T ss_dssp             HTTCCEEEEEESSTTSSHHHHH
T ss_pred             HhhcCeeEEEecccCCCceEee
Confidence            3578999999999999999986

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=84.27  E-value=0.95  Score=42.21  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             chhHHH-HHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFALA-EAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 HifavA-~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||.-. ....... ..+-|-+|+..|.+|||||.++
T Consensus        83 ~Vy~~~~~plv~~~-l~G~n~tifAYGqTGSGKTyTm  118 (373)
T 2wbe_C           83 DVYSVVVSPLIEEV-LNGYNCTVFAYGQTGTGKTHTM  118 (373)
T ss_dssp             HHHHHHHHHHHHHH-HHTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCceEEEEeecCCCCCcceec
Confidence            456532 2223333 3578999999999999999974

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=84.25  E-value=0.72  Score=38.20  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             CceEEEeCCCCCChhHHHH-HHHHH
Q psy17386         56 NQSCVISGESGAGKTETTK-FILQY   79 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k-~il~y   79 (276)
                      .+.++++|..|+|||+.+. .+.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999974 44444

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=84.17  E-value=0.64  Score=36.98  Aligned_cols=20  Identities=30%  Similarity=0.350  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        13 ki~v~G~~~~GKSsli~~l~   32 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYT   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999765543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=84.15  E-value=0.6  Score=36.78  Aligned_cols=23  Identities=26%  Similarity=0.196  Sum_probs=18.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      +.-.|++.|.+|+|||.....++
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~   29 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIR   29 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34569999999999999776654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=84.14  E-value=0.61  Score=45.14  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +..|++.|++|+|||..+|.+...+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999888764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=84.12  E-value=0.32  Score=47.62  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|+||||||+..|.++..+.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4568999999999999999988877654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=84.12  E-value=0.62  Score=38.43  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=19.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ..-.|++.|.+|+|||.....++.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999998776654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=84.09  E-value=0.63  Score=37.13  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=18.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~   78 (276)
                      =.|++.|.+|+|||.....++.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999998776654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=84.08  E-value=0.64  Score=37.30  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||+....++
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~   42 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLI   42 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            369999999999999766654

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=84.07  E-value=0.72  Score=39.60  Aligned_cols=38  Identities=21%  Similarity=0.121  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         40 FALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        40 favA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...=..|+..+...   ..+++.|++|+|||..+..++..+
T Consensus        95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            33344566665544   238899999999999988777654

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=83.98  E-value=0.87  Score=42.37  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        81 l~G~n~tifAYGqTGSGKTyTm  102 (365)
T 2y65_A           81 LAGYNGTIFAYGQTSSGKTHTM  102 (365)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             hCCCceEEEeecCCCCCCceEE
Confidence            3577999999999999999985

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=83.96  E-value=0.65  Score=36.88  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         6 ki~v~G~~~~GKSsli~~l~   25 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLI   25 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999766654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=83.90  E-value=0.57  Score=44.06  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..+.+.|.|+||+|||+.++.++
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            56889999999999999988664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=83.88  E-value=0.34  Score=39.71  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      -.....|++.|.+|+|||+..+.++
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHh
Confidence            3455679999999999999766543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=83.87  E-value=0.49  Score=44.78  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      -+=.|++.|+||+|||+..+.++..
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCC
Confidence            3445799999999999988877654

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=83.82  E-value=0.65  Score=43.25  Aligned_cols=31  Identities=13%  Similarity=0.113  Sum_probs=26.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      ..++.+++.|.+|||||+..+.++..+...+
T Consensus        51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~~g   81 (437)
T 1e9r_A           51 AEPRHLLVNGATGTGKSVLLRELAYTGLLRG   81 (437)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             cCcceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            3578899999999999999988888876543

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=83.81  E-value=1.2  Score=36.27  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             CHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH-HHHHHHHH
Q psy17386         20 TQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT-KFILQYLC   81 (276)
Q Consensus        20 ~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~-k~il~yL~   81 (276)
                      ++...+.........  |  +.+=.+|...+...   +.+++.+++|+|||.+. ..+++.+.
T Consensus         9 ~~~l~~~l~~~~~~~--~--~~~Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~   64 (207)
T 2gxq_A            9 KPEILEALHGRGLTT--P--TPIQAAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA   64 (207)
T ss_dssp             CHHHHHHHHHTTCCS--C--CHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHcCCCC--C--CHHHHHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence            355555554433222  2  23334555555543   45999999999999984 44555554

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=83.76  E-value=0.88  Score=42.15  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=24.7

Q ss_pred             chhHH-HHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFAL-AEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 Hifav-A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||.- +....... ..+-|-+|+..|.+|||||.++
T Consensus        63 ~Vy~~~~~plv~~~-l~G~n~tifAYGqTGSGKTyTm   98 (355)
T 1goj_A           63 DIFDFSIKPTVDDI-LNGYNGTVFAYGQTGAGKSYTM   98 (355)
T ss_dssp             HHHHHHTHHHHHHH-TTTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCCcceEEEECCCCCCcceEe
Confidence            45652 33333333 3578999999999999999975

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=83.73  E-value=1  Score=42.92  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.9

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||+++
T Consensus       133 l~GyN~tIfAYGQTGSGKTyTM  154 (443)
T 2owm_A          133 FEGYHTCIFAYGQTGSGKSYTM  154 (443)
T ss_dssp             HTTCCEEEEEESSTTSSHHHHH
T ss_pred             hcCCceEEEEeCCCCCCCCEEe
Confidence            4678999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=83.71  E-value=0.53  Score=37.62  Aligned_cols=20  Identities=20%  Similarity=0.371  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        25 ~i~v~G~~~~GKSsli~~l~   44 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALF   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            59999999999999766553

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=83.68  E-value=1  Score=42.38  Aligned_cols=34  Identities=29%  Similarity=0.235  Sum_probs=24.8

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ||.-........ ..+-|-||+..|.+|||||.++
T Consensus       125 Vf~~v~~lv~~~-l~G~N~tifAYGqTGSGKTyTM  158 (403)
T 4etp_A          125 VFKEVGQLVQSS-LDGYNVAIFAYGQTGSGKTFTM  158 (403)
T ss_dssp             HHHHHHHHHHHH-HTTCCEEEEEESCTTSSHHHHH
T ss_pred             HHHHHHHHHHHH-hCCcceEEEEECCCCCCCceEe
Confidence            554433333333 3678999999999999999987

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=83.64  E-value=0.69  Score=36.77  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        20 ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999766554

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=83.62  E-value=0.67  Score=37.56  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=18.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      +.=.|++.|.+|+|||.....++
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~   41 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYL   41 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHh
Confidence            34469999999999999765544

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=83.60  E-value=0.61  Score=39.56  Aligned_cols=21  Identities=43%  Similarity=0.624  Sum_probs=18.0

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||+....++
T Consensus        30 ~~i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHc
Confidence            469999999999999877665

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=83.50  E-value=0.76  Score=43.58  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ...|++.|.+|+|||+++..+..+++..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~  126 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKR  126 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3589999999999999999999988753

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=83.50  E-value=0.93  Score=42.13  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.5

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        86 l~G~N~tifAYGqTGSGKTyTm  107 (366)
T 2zfi_A           86 FEGYNVCIFAYGQTGAGKSYTM  107 (366)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             hcCCeeEEEEeCCCCCCCceEe
Confidence            3678999999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=83.49  E-value=0.7  Score=36.51  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.2

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~   33 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFV   33 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            358999999999999765554

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=83.48  E-value=1.7  Score=39.58  Aligned_cols=41  Identities=20%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             HHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         42 LAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        42 vA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++.....+.. ..+.-.|+++|.+|+|||+.+..+...++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34444444432 345678999999999999999999988864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=83.48  E-value=0.67  Score=36.15  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=16.0

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      .|++.|.+|+|||.....+
T Consensus         4 ki~ivG~~~~GKSsli~~l   22 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTF   22 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3899999999999976654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=83.44  E-value=0.72  Score=36.40  Aligned_cols=20  Identities=30%  Similarity=0.375  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        12 ~i~v~G~~~~GKssli~~l~   31 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFK   31 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999765543

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=83.43  E-value=0.65  Score=38.02  Aligned_cols=43  Identities=14%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         34 SQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        34 ~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+|..|  =.+|+..+...   +.+++.+++|+|||..+-.++..+.
T Consensus        31 ~~~l~~~--Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~   73 (216)
T 3b6e_A           31 ELQLRPY--QMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDHL   73 (216)
T ss_dssp             CCCCCHH--HHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCCchHH--HHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3444444  34556656543   5699999999999999887766554

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=83.41  E-value=0.93  Score=40.70  Aligned_cols=28  Identities=14%  Similarity=0.119  Sum_probs=24.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+.++|.|.+|+|||..+..+....+.
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999998888776654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=83.38  E-value=1.7  Score=41.48  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...|++.|.+|+|||+.++.+-+.+
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHc
Confidence            4679999999999999999988776

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=83.35  E-value=0.65  Score=45.99  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...+.+.+.|++|||||+..|.+.-.+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            456889999999999999988876554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=83.35  E-value=0.63  Score=37.05  Aligned_cols=20  Identities=20%  Similarity=0.429  Sum_probs=16.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||...+.++
T Consensus        12 ki~v~G~~~~GKSsli~~l~   31 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFI   31 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999766553

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=83.22  E-value=0.72  Score=37.33  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=17.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~   35 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFM   35 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999765544

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=83.18  E-value=1.3  Score=36.69  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             CCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHH-HHHHHHHHH
Q psy17386         13 YKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTET-TKFILQYLC   81 (276)
Q Consensus        13 ~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~-~k~il~yL~   81 (276)
                      |..+++ ++...+.........    .+.+=.+|+..+...   +.+++.+++|+|||.+ .-.+++.+.
T Consensus        16 f~~l~l-~~~l~~~l~~~g~~~----~~~~Q~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l~   77 (224)
T 1qde_A           16 FDDMEL-DENLLRGVFGYGFEE----PSAIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRID   77 (224)
T ss_dssp             GGGGTC-CHHHHHHHHHHTCCS----CCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             hhhcCC-CHHHHHHHHHCCCCC----CcHHHHHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence            444443 455555444332222    233334556665543   4599999999999988 445555553

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=83.17  E-value=0.8  Score=42.41  Aligned_cols=22  Identities=36%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus       102 l~G~n~tifAYGqTGSGKTyTm  123 (355)
T 3lre_A          102 LNGYNCTVLAYGATGAGKTHTM  123 (355)
T ss_dssp             TTTCCEEEEEECCTTSSHHHHH
T ss_pred             hCCCceEEEEeCCCCCCceeee
Confidence            3677999999999999999985

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=82.98  E-value=0.67  Score=36.38  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=17.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus        15 ~~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999766554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=82.92  E-value=0.59  Score=44.16  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.+.|++|||||+..+.++-.+
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCC
Confidence            478899999999999988877643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=82.89  E-value=0.83  Score=36.74  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=19.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ...=.|++.|.+|+|||.....++.
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3445799999999999997665543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=82.88  E-value=0.77  Score=36.98  Aligned_cols=20  Identities=40%  Similarity=0.514  Sum_probs=16.5

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        27 ki~v~G~~~~GKSsLi~~l~   46 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFT   46 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            58999999999999765543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=82.78  E-value=0.61  Score=37.52  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .-.|++.|.+|+|||+....++
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3469999999999999876664

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=82.77  E-value=0.96  Score=41.95  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        85 l~G~n~tifAYGqTGSGKTyTM  106 (359)
T 1x88_A           85 IMGYNCTIFAYGQTGTGKTFTM  106 (359)
T ss_dssp             HTTCEEEEEEEECTTSSHHHHH
T ss_pred             hCCCceEEEEeCCCCCCCceEE
Confidence            3577999999999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=82.71  E-value=1.7  Score=39.39  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=30.2

Q ss_pred             HHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         44 EAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        44 ~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..+...+. ...+...|.++|.+|+|||+.+..+...+...
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~   83 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   83 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            34444432 34567889999999999999999999887653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=82.67  E-value=0.8  Score=36.24  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=16.5

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         7 ~i~~~G~~~~GKssl~~~l~   26 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYT   26 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999765543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=82.65  E-value=1.1  Score=40.85  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=23.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .-.|.|.|.+|||||+....++..+..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            567999999999999999999988754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=82.64  E-value=0.62  Score=37.12  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         3 ki~v~G~~~~GKSsli~~l~   22 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLT   22 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38899999999999766554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=82.64  E-value=0.78  Score=36.88  Aligned_cols=22  Identities=27%  Similarity=0.225  Sum_probs=17.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .=.|++.|.+|+|||.....++
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~   41 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFC   41 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999766543

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=82.61  E-value=2.6  Score=37.48  Aligned_cols=62  Identities=19%  Similarity=0.298  Sum_probs=38.3

Q ss_pred             ecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         10 VNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        10 vNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      +++|..+++ +++..+........  .|  +.+=.+|+..+... .++.+++.+++|+|||...-..+
T Consensus         4 ~~~f~~~~l-~~~l~~~l~~~~~~--~~--~~~Q~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~   65 (395)
T 3pey_A            4 AKSFDELGL-APELLKGIYAMKFQ--KP--SKIQERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM   65 (395)
T ss_dssp             CCSSTTSCC-CHHHHHHHHHTTCC--SC--CHHHHHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred             ccCHhhCCC-CHHHHHHHHHCCCC--CC--CHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence            366777764 45555555443322  23  33344566666554 34679999999999999765433

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=82.47  E-value=0.78  Score=38.79  Aligned_cols=18  Identities=39%  Similarity=0.669  Sum_probs=15.1

Q ss_pred             eEEEeCCCCCChhHHHHH
Q psy17386         58 SCVISGESGAGKTETTKF   75 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~   75 (276)
                      -++++|.+|||||..+..
T Consensus         7 i~l~tG~pGsGKT~~a~~   24 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVS   24 (199)
T ss_dssp             EEEEECCTTSSHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHH
Confidence            468999999999997644

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=82.45  E-value=0.81  Score=36.70  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=17.0

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        18 ki~v~G~~~~GKSsli~~l~   37 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFA   37 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999766654

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=82.43  E-value=0.81  Score=42.29  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus        74 l~G~n~tifAYGqTGSGKTyTM   95 (349)
T 1t5c_A           74 IQGYNGTIFAYGQTASGKTYTM   95 (349)
T ss_dssp             HTTCCEEEEEEESTTSSHHHHH
T ss_pred             HcCCccceeeecCCCCCCCeEE
Confidence            3678999999999999999986

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=82.41  E-value=0.85  Score=43.94  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=27.9

Q ss_pred             HHHhHhc--CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         47 YSSLQNL--DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        47 y~~m~~~--~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +..++..  .+...+.|.|++|||||+.++.+.-.+..
T Consensus       270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~  307 (525)
T 1tf7_A          270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA  307 (525)
T ss_dssp             HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            3445443  36788999999999999999998877654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=82.39  E-value=0.77  Score=36.13  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         8 ki~v~G~~~~GKssl~~~l~   27 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFA   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999766544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=82.38  E-value=0.83  Score=36.08  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=17.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~   29 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYT   29 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            358999999999999765544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=82.37  E-value=0.64  Score=36.16  Aligned_cols=19  Identities=21%  Similarity=0.555  Sum_probs=15.8

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      .|++.|.+|+|||...+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l   22 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIF   22 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3899999999999976544

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=82.28  E-value=0.74  Score=44.91  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.+.+.|.|+||||||+..|.+.-.+.
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467889999999999999887766543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=82.24  E-value=0.84  Score=36.84  Aligned_cols=20  Identities=25%  Similarity=0.386  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        23 ki~v~G~~~~GKSsli~~l~   42 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFT   42 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHh
Confidence            58999999999999766554

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=82.07  E-value=1  Score=42.07  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             cCCCceEEEeCCCCCChhHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .+-|-+|+..|.+|||||.++
T Consensus        99 ~G~n~tifAYGqTGSGKTyTM  119 (372)
T 3b6u_A           99 QGFNGTIFAYGQTGTGKTYTM  119 (372)
T ss_dssp             TTCCEEEEEEESTTSSHHHHH
T ss_pred             CCCeeeEEeecCCCCCCCEeE
Confidence            578999999999999999985

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=82.03  E-value=0.84  Score=37.03  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=16.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        10 ki~v~G~~~~GKSsli~~l~   29 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYV   29 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999766554

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=81.92  E-value=0.99  Score=41.75  Aligned_cols=21  Identities=38%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             cCCCceEEEeCCCCCChhHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .+-|-+|+..|.+|||||.++
T Consensus        87 ~G~n~tifAYGqTGSGKTyTm  107 (350)
T 2vvg_A           87 EGFNSTIFAYGQTGAGKTWTM  107 (350)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             CCCceeEEeecCCCCCCCEEe
Confidence            578999999999999999985

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=81.89  E-value=0.77  Score=36.08  Aligned_cols=19  Identities=32%  Similarity=0.447  Sum_probs=16.1

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      .|++.|.+|+|||.....+
T Consensus        11 ~i~v~G~~~~GKssl~~~l   29 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRF   29 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999976554

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=81.79  E-value=1.1  Score=42.33  Aligned_cols=29  Identities=17%  Similarity=0.202  Sum_probs=25.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..+.+++.|.+|+|||..+..+...++..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~  230 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATK  230 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            56799999999999999999998887753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=81.59  E-value=0.79  Score=36.75  Aligned_cols=20  Identities=30%  Similarity=0.430  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||...+.++
T Consensus         9 ki~v~G~~~vGKSsli~~l~   28 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFA   28 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999876554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=81.48  E-value=0.93  Score=36.44  Aligned_cols=20  Identities=25%  Similarity=0.205  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        24 ki~vvG~~~~GKSsli~~l~   43 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYA   43 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999766543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=81.41  E-value=0.94  Score=36.20  Aligned_cols=20  Identities=35%  Similarity=0.425  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus        17 ~i~v~G~~~~GKssli~~l~   36 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFT   36 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            59999999999999765553

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=81.25  E-value=1  Score=41.29  Aligned_cols=37  Identities=14%  Similarity=0.067  Sum_probs=28.2

Q ss_pred             HHHHhHh-cC--CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQN-LD--VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~-~~--~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+..++. .+  +...++|.|++|+|||+.+..++..++.
T Consensus        48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~   87 (349)
T 2zr9_A           48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA   87 (349)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4445554 22  5678999999999999999988877654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=81.20  E-value=1  Score=41.00  Aligned_cols=25  Identities=20%  Similarity=0.086  Sum_probs=21.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.++|.|++|+|||..+..+...
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5578899999999999988877654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=81.18  E-value=0.96  Score=36.81  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=17.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .=.|++.|.+|+|||.....++
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            3469999999999999766554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=81.18  E-value=1.8  Score=34.57  Aligned_cols=25  Identities=24%  Similarity=0.213  Sum_probs=20.0

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .++.=.|++.|.+|+|||.....++
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHh
Confidence            4555679999999999999766554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=81.06  E-value=0.96  Score=36.64  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=18.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..=.|++.|.+|+|||.....++
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~   49 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFL   49 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34569999999999999765544

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=81.04  E-value=0.98  Score=36.46  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=18.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..=.|++.|.+|+|||.....++
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~   44 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFS   44 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeeEEEEECcCCCCHHHHHHHHh
Confidence            33469999999999999766544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=81.03  E-value=0.55  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..+.+.|.|+||||||+..+.++
T Consensus       347 ~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          347 LGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCCEEEEEeeCCCCHHHHHHHHH
Confidence            56889999999999999998664

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.03  E-value=1.2  Score=42.33  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+..|++.|.+|+|||..+|.+-..+-
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999887753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=81.01  E-value=0.75  Score=39.45  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=19.1

Q ss_pred             CceEEEeCCCCCChhHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      .=.|++.|.+|+|||+....++.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhC
Confidence            34699999999999998777653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=80.95  E-value=1.5  Score=38.01  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=21.9

Q ss_pred             HHHHhHhcCC-CceEEEeCCCCCChhHHHHHHH
Q psy17386         46 AYSSLQNLDV-NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        46 Ay~~m~~~~~-~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ..+.+..... .=.|++.|.+|+|||+....++
T Consensus        28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~   60 (270)
T 1h65_A           28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII   60 (270)
T ss_dssp             HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHh
Confidence            3334443333 4479999999999999766654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=80.94  E-value=0.98  Score=36.51  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=17.6

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .=.|++.|.+|+|||.....++
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~   42 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFL   42 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            3469999999999999765544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=80.85  E-value=0.93  Score=36.80  Aligned_cols=19  Identities=32%  Similarity=0.265  Sum_probs=16.0

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      .|++.|.+|+|||.....+
T Consensus        10 ki~v~G~~~~GKSsli~~l   28 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRY   28 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999976554

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=80.69  E-value=1  Score=35.89  Aligned_cols=17  Identities=35%  Similarity=0.346  Sum_probs=15.0

Q ss_pred             eEEEeCCCCCChhHHHH
Q psy17386         58 SCVISGESGAGKTETTK   74 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k   74 (276)
                      .|++.|.+|+|||...+
T Consensus        16 ki~vvG~~~~GKssL~~   32 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLK   32 (198)
T ss_dssp             EEEEECSTTSSHHHHHH
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            58999999999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=80.68  E-value=1.1  Score=36.65  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=21.5

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHH
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      +++.+-...+.=.|++.|.+|+|||...+.+
T Consensus        15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l   45 (198)
T 1f6b_A           15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHML   45 (198)
T ss_dssp             HHHHHTCTTCCEEEEEEEETTSSHHHHHHHH
T ss_pred             HHHHhhccCCCcEEEEECCCCCCHHHHHHHH
Confidence            3444433334456999999999999976654

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=80.67  E-value=1.9  Score=35.14  Aligned_cols=55  Identities=9%  Similarity=0.148  Sum_probs=32.3

Q ss_pred             CCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHH
Q psy17386         13 YKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKF   75 (276)
Q Consensus        13 ~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~   75 (276)
                      |..++ .+++..+.........  |  +.+=.+|+..+...   +.+++.+++|+|||.+.-.
T Consensus         5 f~~~~-l~~~l~~~l~~~g~~~--~--~~~Q~~~i~~~~~~---~~~lv~apTGsGKT~~~~~   59 (206)
T 1vec_A            5 FEDYC-LKRELLMGIFEMGWEK--P--SPIQEESIPIALSG---RDILARAKNGTGKSGAYLI   59 (206)
T ss_dssp             GGGSC-CCHHHHHHHHTTTCCS--C--CHHHHHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred             hhhcC-CCHHHHHHHHHCCCCC--C--CHHHHHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence            44444 2455565555433222  2  23334566665543   4599999999999987653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=80.63  E-value=0.68  Score=45.72  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |.+.|+||||||+..+.+.-.+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            8999999999999999888764

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=80.57  E-value=2.4  Score=40.16  Aligned_cols=44  Identities=18%  Similarity=0.100  Sum_probs=38.9

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.-+|...|.--.+-|.+.|.|.+|+|||+.++.|.+....
T Consensus       158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~  201 (427)
T 3l0o_A          158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE  201 (427)
T ss_dssp             TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             chhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence            45778899999988899999999999999999999999988653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=80.52  E-value=0.95  Score=35.85  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=18.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      .+.=.|++.|.+|+|||+....+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l   38 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRL   38 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHH
Confidence            45567999999999999975443

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=80.47  E-value=0.92  Score=35.93  Aligned_cols=20  Identities=25%  Similarity=0.268  Sum_probs=16.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||.....++
T Consensus         8 ki~~~G~~~~GKSsli~~l~   27 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFV   27 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHH
Confidence            58999999999999766554

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=80.42  E-value=0.46  Score=51.23  Aligned_cols=28  Identities=21%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...|.|-|.|+||||||+..+.+++++-
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence            4568999999999999999999998864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=80.38  E-value=1.1  Score=36.19  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=17.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .=.|++.|.+|+|||.....++
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~   43 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            3459999999999999766554

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=80.30  E-value=0.82  Score=36.14  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=16.4

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      -|++.|.+|+|||.....++
T Consensus         9 ki~~vG~~~vGKTsli~~l~   28 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFL   28 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999765543

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=80.27  E-value=1.3  Score=40.97  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=24.9

Q ss_pred             chhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 HifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||.-....... ...+-|-||+..|.+|||||.++
T Consensus        69 ~vf~~v~~lv~~-~l~G~n~tifAYGqTGSGKTyTm  103 (349)
T 3t0q_A           69 EIFEEIRQLVQS-SLDGYNVCIFAYGQTGSGKTYTM  103 (349)
T ss_dssp             HHHHHHHHHHHG-GGTTCEEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHH-HHCCcceeEEEeCCCCCCCceEe
Confidence            356543332222 23578999999999999999987

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=80.23  E-value=0.93  Score=36.68  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=17.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il   77 (276)
                      =.|++.|.+|+|||.....++
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~   44 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFV   44 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            359999999999999765554

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=80.21  E-value=0.94  Score=42.87  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.4

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+-|-+|+..|.+|||||.++
T Consensus       151 l~G~N~tifAYGQTGSGKTyTM  172 (410)
T 1v8k_A          151 FEGGKATCFAYGQTGSGKTHTM  172 (410)
T ss_dssp             HTTCEEEEEEEESTTSSHHHHH
T ss_pred             hcCCceeEEeecCCCCCCCeEe
Confidence            3577899999999999999985

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=80.09  E-value=1.2  Score=41.24  Aligned_cols=40  Identities=15%  Similarity=0.062  Sum_probs=30.9

Q ss_pred             HHHHHHHhHh-cC--CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         43 AEAAYSSLQN-LD--VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        43 A~~Ay~~m~~-~~--~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .-..+..++. .+  ....++|.|++|+|||+.+..++..++.
T Consensus        45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3345666665 33  5678999999999999999998887664

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=80.06  E-value=1.5  Score=42.29  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..|++.|++|+|||..++.+-+.+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             CeeEeecCchHHHHHHHHHHHHHH
Confidence            579999999999999988876655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	1e-65
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	6e-14
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-65
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-16
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	4e-65
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	7e-14
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	7e-65
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	5e-17
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	1e-64
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	9e-17
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	5e-64
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	1e-16

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  215 bits (548), Expect = 1e-65
 Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 15/183 (8%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V +NPYK+L IY++  +  Y G K     PH++A+A+ AY S+     +QS +
Sbjct: 36  TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 95

Query: 61  ISGESGAGKTETTKFILQYLCSVTS---------------NVSTWVEQQILEANTILEAF 105
            +GESGAGKTE TK ++QYL  V S                    +E+Q+L+AN ILEAF
Sbjct: 96  CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 155

Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
           GNAKTV+NDNSSRFGKF+++ FD    I G  I+ YLLE+SR   Q+  ER +H+FY L+
Sbjct: 156 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 215

Query: 166 EAA 168
             A
Sbjct: 216 AGA 218

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 69.4 bits (169), Expect = 6e-14
 Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 191 WVFAWLVNHINTC-TNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
            +F W++  +N       +    FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH 
Sbjct: 358 RLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHT 417

Query: 250 VFALEQEIV 258
           +F LEQE  
Sbjct: 418 MFILEQEEY 426

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  216 bits (551), Expect = 1e-65
 Identities = 86/180 (47%), Positives = 117/180 (65%), Gaps = 11/180 (6%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   +AVNPY+ L IYT S + +Y G +     PH+F++A+ AY ++     NQSC+
Sbjct: 66  TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 125

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVS-----------TWVEQQILEANTILEAFGNAK 109
           I+GESGAGKTE TK ++ YL  V   V              +E QI++AN +LEA+GNAK
Sbjct: 126 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 185

Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
           T RN+NSSRFGKF+++ F P   I G  I+ YLLE+SR+T+Q   ERNYH+FYQ+   A 
Sbjct: 186 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAI 245

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 77.4 bits (190), Expect = 1e-16
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 169 QYSSSINKEIMHYTSEEKSHVI--WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFA 226
             +   N   +  +    +  +   +F WLV  +N   +       ++GVLDI GFE F 
Sbjct: 361 MVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFD 420

Query: 227 VNSFEQLCINYTNEKLHKFFNHYVFALEQEIV 258
            NSFEQLCINYTNE+L +FFNH++F LEQE  
Sbjct: 421 FNSFEQLCINYTNERLQQFFNHHMFILEQEEY 452

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  213 bits (544), Expect = 4e-65
 Identities = 99/192 (51%), Positives = 131/192 (68%), Gaps = 7/192 (3%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G  LVAVNP+K + IYTQ  V  + G +     PH+FA+++ AY S+ +   NQS +
Sbjct: 70  TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 129

Query: 61  ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
           I+GESGAGKTE TK ++QYL SV     +N S  +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 130 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 189

Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
           SRFGKF+++ F+    I G  IQ YLLE+SR+ FQS  ERNYH+FYQL+  A   ++  K
Sbjct: 190 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 246

Query: 177 EIMHYTSEEKSH 188
           + +H    E  +
Sbjct: 247 KALHLAGPESFN 258

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 69.0 bits (168), Expect = 7e-14
 Identities = 41/65 (63%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
           F WLV  IN      +    F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH++F 
Sbjct: 383 FLWLVKKINNVLCQ-ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFK 441

Query: 253 LEQEI 257
           LEQE 
Sbjct: 442 LEQEE 446

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  214 bits (546), Expect = 7e-65
 Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 11/180 (6%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY+G   V VNPYK L +Y    V  Y G K     PH+F++++ AY  +     NQS +
Sbjct: 68  TYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSIL 127

Query: 61  ISGESGAGKTETTKFILQYLCSVTS-----------NVSTWVEQQILEANTILEAFGNAK 109
           I+GESGAGKT  TK ++QY  ++ +            +   +E QI+ AN +LEAFGNAK
Sbjct: 128 ITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAK 187

Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
           TVRNDNSSRFGKF+++ F     +    I+ YLLE+SR+TFQ P ER+YH+FYQ++   +
Sbjct: 188 TVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAERSYHIFYQIMSNKK 247

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 78.6 bits (193), Expect = 5e-17
 Identities = 40/72 (55%), Positives = 49/72 (68%)

Query: 186 KSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKF 245
           K+    +F W+V  IN   +  Q    F+GVLDI GFE F  NSFEQLCIN+TNEKL +F
Sbjct: 382 KAVYEKMFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQF 441

Query: 246 FNHYVFALEQEI 257
           FNH++F LEQE 
Sbjct: 442 FNHHMFVLEQEE 453

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score =  213 bits (542), Expect = 1e-64
 Identities = 83/170 (48%), Positives = 121/170 (71%), Gaps = 1/170 (0%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G +LVA+NPY++L IY +  +  Y G  MG  +PH+FA+AE AY  +   + NQS +
Sbjct: 39  TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 98

Query: 61  ISGESGAGKTETTKFILQYLCSVT-SNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
           +SGESGAGKT + K+ ++Y  +V+ S     VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 99  VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 158

Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
           GK++++ FD ++ I G  ++ YLLE+SR+ FQ+  ERNYH+FYQL  +A 
Sbjct: 159 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAA 208

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 77.9 bits (191), Expect = 9e-17
 Identities = 36/67 (53%), Positives = 46/67 (68%)

Query: 191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
            +F W+V+H+N   +       F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +V
Sbjct: 348 NLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHV 407

Query: 251 FALEQEI 257
           F LEQE 
Sbjct: 408 FKLEQEE 414

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score =  210 bits (535), Expect = 5e-64
 Identities = 79/172 (45%), Positives = 119/172 (69%), Gaps = 3/172 (1%)

Query: 1   TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
           TY G ++++ NP+K L+IY +S +  Y+G       PH++ALA  AY S++    NQ  +
Sbjct: 31  TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVI 90

Query: 61  ISGESGAGKTETTKFILQYLCSVTSNVST---WVEQQILEANTILEAFGNAKTVRNDNSS 117
           ISGESGAGKTE +K I+Q+L  V+SN S     + + +L++N +LEAFGNAKT+RNDNSS
Sbjct: 91  ISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSS 150

Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
           RFGK+M++ F+      G  I +YLLE+SR+  ++ GER++H+FYQ+++   
Sbjct: 151 RFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLS 202

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 77.0 bits (189), Expect = 1e-16
 Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 135 GCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFA 194
               Q   +     +  +   +   V    ++  Q + S +                +F 
Sbjct: 302 KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYER-------LFN 354

Query: 195 WLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALE 254
           WLV+ INT  N   +    +G+LDI+GFE F  NSFEQL IN+ NEKL + F       E
Sbjct: 355 WLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSE 414

Query: 255 QEI 257
           QE 
Sbjct: 415 QEE 417

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	100.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	100.0
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	100.0
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.7
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.57
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.56
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.51
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.48
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.36
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.35
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.33
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.27
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.22
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.21
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.16
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.15
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.14
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.11
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.08
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.06
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.93
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.79
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.65
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.55
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.48
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.43
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.4
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.37
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.37
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.34
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.33
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.31
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.27
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.25
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.19
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.18
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.15
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.11
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.07
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.04
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.86
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.86
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.85
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.82
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.69
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.66
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	94.65
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.63
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.62
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.57
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.53
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.51
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.39
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.14
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.13
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.06
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.89
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.77
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.71
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.62
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.59
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.56
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.52
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.48
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.48
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.39
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.25
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	93.18
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.07
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	93.01
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	92.97
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.8
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.78
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	92.77
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	92.76
d1g2912	240	Maltose transport protein MalK, N-terminal domain	92.61
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	92.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.57
d2awna2	232	Maltose transport protein MalK, N-terminal domain	92.4
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.33
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.27
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.27
d1okkd2	207	GTPase domain of the signal recognition particle r	91.98
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.97
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.85
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	91.71
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	91.69
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	91.43
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.42
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	91.41
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.11
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.02
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	90.94
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.87
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	90.85
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	90.73
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	90.73
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.72
d2qy9a2	211	GTPase domain of the signal recognition particle r	90.66
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.63
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.63
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.43
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	90.18
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.02
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.01
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	89.98
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.81
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	89.77
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	89.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	89.46
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	89.42
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	89.36
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.12
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.08
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	88.95
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.76
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	88.66
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.58
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	88.4
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	88.39
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	88.28
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	88.14
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	88.1
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	88.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	87.48
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.36
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.29
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	87.25
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	87.07
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.03
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.87
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	86.53
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	86.24
d2fh5b1	207	Signal recognition particle receptor beta-subunit	86.06
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	85.99
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.86
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	85.85
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	85.69
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	85.54
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	85.54
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	85.44
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	85.4
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	85.38
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.28
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	85.2
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	85.16
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	85.07
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	85.05
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	85.01
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	84.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	84.83
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	84.81
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	84.72
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	84.7
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	84.63
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	84.6
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	84.6
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	84.5
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	84.36
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	84.34
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.3
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	84.3
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	84.2
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	84.17
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.16
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	84.15
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.13
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	84.04
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	83.9
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	83.77
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	83.73
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	83.68
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	83.52
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	83.4
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	83.37
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	83.36
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	83.35
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	83.22
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.2
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	83.1
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	82.98
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	82.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	82.84
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	82.78
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	82.75
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	82.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	82.53
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	82.53
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	82.46
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	82.46
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	82.43
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	82.19
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	82.16
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	82.04
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.88
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	81.78
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	81.74
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	81.73
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	81.67
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	81.63
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.45
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	81.15
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	81.03
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	81.0
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	80.74
d1tuea_	205	Replication protein E1 helicase domain {Human papi	80.72
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	80.57
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.51

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=4.6e-93  Score=719.54  Aligned_cols=266  Identities=52%  Similarity=0.779  Sum_probs=240.7

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++...++|||||++|++||+.|+.+++||||||||||||||||++|+||+||
T Consensus        70 T~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2          70 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC----cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386         81 CSVTSNV----STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER  156 (276)
Q Consensus        81 ~~~~~~~----~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er  156 (276)
                      +.++++.    ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||
T Consensus       150 ~~~s~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~gEr  229 (712)
T d1d0xa2         150 ASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETER  229 (712)
T ss_dssp             HHHHSCC-----CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCC
T ss_pred             HHHhCCCcccccchHHHHHHhhhhHHHHhcCcCcCCCCCccceeEEEEEEEcCCCccccceeEEeccCCceEEeeccccc
Confidence            9988643    356899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhhcccChhHH------HHcc-----------------------------CCChhh----------------
Q psy17386        157 NYHVFYQLVEAAQYSSSIN------KEIM-----------------------------HYTSEE----------------  185 (276)
Q Consensus       157 nfHIFYqllaG~~~~~~l~------~~~~-----------------------------~~~~~d----------------  185 (276)
                      |||||||||+|++++..-+      +.|+                             +|+++|                
T Consensus       230 nfHIFYqll~g~~~~~~~~~~l~~~~~~~yL~~~~~~~~~~~dd~~~f~~~~~al~~lgfs~~e~~~i~~iLaaILhLGN  309 (712)
T d1d0xa2         230 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGN  309 (712)
T ss_dssp             SBHHHHHHHHHSCHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHhCCCHHHHHHhCCCCchhcccccCCCCcccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcc
Confidence            9999999999998532100      1111                             233222                


Q ss_pred             ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386        186 ------------------------------------------------------------KSHV------IWVFAWLVNH  199 (276)
Q Consensus       186 ------------------------------------------------------------~rda------~~LF~wlv~~  199 (276)
                                                                                  +|||      ++||+|||++
T Consensus       310 i~F~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~~A~~~rdalaK~LY~~LF~wiV~~  389 (712)
T d1d0xa2         310 IKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKK  389 (712)
T ss_dssp             CCCBCCSSSSCBCSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEeecCCcceecCCHHHHHHHHHHhCCChhHhhhhhcceeeccCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                        4555      9999999999


Q ss_pred             hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      ||++|++. ....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.+
T Consensus       390 IN~~l~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq~eY~~EgI~~~~  456 (712)
T d1d0xa2         390 INNVLCQE-RKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTF  456 (712)
T ss_dssp             HHHHHCCS-CCSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             HhhhcccC-cccceeeeeecccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            99999765 45689999999999999999999999999999999999999999999999999999965

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=6.3e-93  Score=725.81  Aligned_cols=267  Identities=47%  Similarity=0.755  Sum_probs=244.9

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++...++|||||+||++||+.|+.+++||||||||||||||||++|+||+||
T Consensus        66 T~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2          66 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             EEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC-----------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccccccc
Q psy17386         81 CSVTSNV-----------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRIT  149 (276)
Q Consensus        81 ~~~~~~~-----------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~  149 (276)
                      +.+++..           ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGk~~~l~f~~~g~i~ga~i~~yLLEksRvv  225 (789)
T d1kk8a2         146 AKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVT  225 (789)
T ss_dssp             HHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGT
T ss_pred             HHHhcccccccccccccccccHHHHHHHHhHHHHhccccCCCCCCccCCcceeEEEEECCCCCCccceeEEecCCCceee
Confidence            9987532           24689999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHHHhhcccChhHH-------HHcc----------------------------CCChhh---------
Q psy17386        150 FQSPGERNYHVFYQLVEAAQYSSSIN-------KEIM----------------------------HYTSEE---------  185 (276)
Q Consensus       150 ~~~~~ErnfHIFYqllaG~~~~~~l~-------~~~~----------------------------~~~~~d---------  185 (276)
                      .+++||||||||||||+|++++..-.       ..|.                            ||+++|         
T Consensus       226 ~~~~gErnfHIFY~ll~G~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~ila  305 (789)
T d1kk8a2         226 YQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTA  305 (789)
T ss_dssp             CCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ecccccchhHHHHHHHcCCCHHHHHHhCCCCchhhhHhhcCCCcccCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999998653211       0111                            232221         


Q ss_pred             --------------------------------------------------------------------hhhh------hh
Q psy17386        186 --------------------------------------------------------------------KSHV------IW  191 (276)
Q Consensus       186 --------------------------------------------------------------------~rda------~~  191 (276)
                                                                                          .|||      ++
T Consensus       306 aILhLGni~F~~~~~~~~~~~~~~~~~~~~a~LLgi~~~~L~~~l~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~lY~~  385 (789)
T d1kk8a2         306 SILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDR  385 (789)
T ss_dssp             HHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccceeeccCCccccccCChHHHHHHHHHhCCCHHHhhcceeEEEEecccCceecCCCHHHHHHHHHHHHHHHHHH
Confidence                                                                                4555      99


Q ss_pred             HHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       192 LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      ||+|||++||.+|++......+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.+
T Consensus       386 LF~wIV~~IN~~L~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~Y~~EgI~~~~  461 (789)
T d1kk8a2         386 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEF  461 (789)
T ss_dssp             HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHHHHhhhhcCCCCCcceEEEEeecccceecCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence            9999999999999887777789999999999999999999999999999999999999999999999999999965

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=3e-92  Score=721.19  Aligned_cols=267  Identities=45%  Similarity=0.709  Sum_probs=244.2

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++...++|||||+||++||+.|+.+++|||||+||||||||||++|+||+||
T Consensus        68 T~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2          68 TYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             EECSSCEEEECCSSCCGGGCTTHHHHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC-----------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccccccc
Q psy17386         81 CSVTSNV-----------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRIT  149 (276)
Q Consensus        81 ~~~~~~~-----------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~  149 (276)
                      +.++++.           ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~ylLEksRv~  227 (794)
T d2mysa2         148 ATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVT  227 (794)
T ss_dssp             HHHTCCCC-----------CCHHHHHHHHHHHHHHHHEECCSSCSSEECSEEEEEEEECSSSSEEECCEEEECCCGGGGT
T ss_pred             HHHcCCCCCccccccccccCcHHHHHHHhhhHHHHhcCCcccccCChhhhheeeeeEECCCCCEeeEEEEEEecCCceEE
Confidence            9987532           34689999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHHHHhhcccChh--HH-----HHcc----------------------------CCChhh---------
Q psy17386        150 FQSPGERNYHVFYQLVEAAQYSSS--IN-----KEIM----------------------------HYTSEE---------  185 (276)
Q Consensus       150 ~~~~~ErnfHIFYqllaG~~~~~~--l~-----~~~~----------------------------~~~~~d---------  185 (276)
                      .+++|||||||||||++|++++..  +.     ..|.                            +|+++|         
T Consensus       228 ~~~~gErnfHIFYqll~g~~~~~~~~~~l~~~~~~y~yl~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~i~~ila  307 (794)
T d2mysa2         228 FQLPAERSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSEGEITVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTG  307 (794)
T ss_dssp             CCCTTCCCBHHHHHHTTCSSHHHHHHHTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ecCcccccHHHHHHHHcCCCHHHHHHhccCCCHHHhhhcCCCCcccCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999999875321  00     1111                            222221         


Q ss_pred             --------------------------------------------------------------------hhhh------hh
Q psy17386        186 --------------------------------------------------------------------KSHV------IW  191 (276)
Q Consensus       186 --------------------------------------------------------------------~rda------~~  191 (276)
                                                                                          +|||      ++
T Consensus       308 aILhLGni~f~~~~~~~~~~~~~~~~~~~~a~LLgi~~~~L~~~L~~~~~~~~~e~i~~~l~~~~a~~~rdalaK~LY~~  387 (794)
T d2mysa2         308 AVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRVGVGNEAVTKGETVSEVHNSVGALAKAVYEK  387 (794)
T ss_dssp             HHHHHTTCCEEECTTSCCEEESCSSHHHHHHHHHTCCHHHHHHHHHSCBCCCSSSCCBCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccceeEeecCCcccccccchHHHHHHHHHhCCCHHHhhccceeeEEEecccceeeeCCHHHHHHHHHHHHHHHHHH
Confidence                                                                                3555      99


Q ss_pred             HHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       192 LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      ||+|||++||+++.+......+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|..
T Consensus       388 LF~wiV~~IN~~l~~~~~~~~~IgILDifGFE~f~~NsfEQLcINyaNEkLQq~f~~~~F~~Eq~~Y~~EgI~~~~  463 (794)
T d2mysa2         388 MFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEF  463 (794)
T ss_dssp             HHHHHHHHHHHHTCCSSCCCEEEEEEEEECCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHhhhhcccCCCcceEEEEeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            9999999999999887778899999999999999999999999999999999999999999999999999999964

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=100.00  E-value=2.4e-91  Score=704.91  Aligned_cols=266  Identities=42%  Similarity=0.661  Sum_probs=243.7

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++.+++|+++...++|||||+||++||+.|+.+++|||||+||||||||||++|+||+||
T Consensus        31 T~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          31 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386         81 CSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN  157 (276)
Q Consensus        81 ~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern  157 (276)
                      +.++++.   ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.+++||||
T Consensus       111 ~~~s~~~~~~~~~i~~~i~~~n~iLeaFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~ylLEksRv~~~~~gErn  190 (684)
T d1lkxa_         111 TFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERS  190 (684)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCC
T ss_pred             HHHcCCCCCccchHHHHHHhhhhhhhhcccccccCCCCcCceeeEEEEEecCCCcEeeEEEEEeeecccccccccccccc
Confidence            9988754   2458899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccChhHH-------HHcc-----------------------------CCChhh----------------
Q psy17386        158 YHVFYQLVEAAQYSSSIN-------KEIM-----------------------------HYTSEE----------------  185 (276)
Q Consensus       158 fHIFYqllaG~~~~~~l~-------~~~~-----------------------------~~~~~d----------------  185 (276)
                      |||||||++|+++++.-+       ..|+                             +|+++|                
T Consensus       191 fHIFYqll~g~~~~~~~~l~~~~~~~~y~~l~~~~~~~~~~~dd~~~f~~l~~al~~lg~~~~e~~~i~~ilaaILhLGn  270 (684)
T d1lkxa_         191 FHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGN  270 (684)
T ss_dssp             BHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHhCCCHHHHHhhccCCccchhhhhcCCCCccCCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcc
Confidence            999999999987532100       0111                             222221                


Q ss_pred             ---------------------------------------------------------------------hhhh------h
Q psy17386        186 ---------------------------------------------------------------------KSHV------I  190 (276)
Q Consensus       186 ---------------------------------------------------------------------~rda------~  190 (276)
                                                                                           .|||      +
T Consensus       271 i~F~~~~~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~~l~~~~i~~~~~~~~~~i~~~~~~~~A~~~rdalak~LY~  350 (684)
T d1lkxa_         271 ITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYE  350 (684)
T ss_dssp             CCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHH
T ss_pred             eeEeeccccccCcceeecCCHHHHHHHHhhcCCCHHHHHhhhheeeeeecccccceEEEecCCHHHHHHHHHHHHHHHHH
Confidence                                                                                 3555      8


Q ss_pred             hHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386        191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL  266 (276)
Q Consensus       191 ~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~  266 (276)
                      +||+|||++||++|.++.+...+||||||||||+|+.||||||||||||||||++|++++|..||++|++|||+|.
T Consensus       351 ~LF~wiv~~IN~~L~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~if~~e~~~Y~~EgI~~~  426 (684)
T d1lkxa_         351 RLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWK  426 (684)
T ss_dssp             HHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhhhhhcCCCCcccceEEEeeccCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCC
Confidence            9999999999999998877789999999999999999999999999999999999999999999999999999984

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=100.00  E-value=3e-91  Score=708.92  Aligned_cols=267  Identities=45%  Similarity=0.791  Sum_probs=245.4

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++.+|+++...++|||||+||++||+.|+.+++||||||||||||||||++|++|+||
T Consensus        39 T~~G~iLiaiNP~~~~~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          39 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccC-CcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386         81 CSVTSN-VSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH  159 (276)
Q Consensus        81 ~~~~~~-~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH  159 (276)
                      +.++++ ....++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.+++||||||
T Consensus       119 ~~~s~~~~~~~~~~~i~~~n~ileaFGnAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~ylLEksRv~~~~~~ErnfH  198 (730)
T d1w7ja2         119 ATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYH  198 (730)
T ss_dssp             HHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBH
T ss_pred             HHHcCCCccccHHHHHHHHHHHHHHhcccccCCCCCcccceeeeeeeecCCCCEEEEEEEEccccccceeeecCCCCcch
Confidence            999764 3567999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccChh--HH----HH--------------------cc---------CCChhh-------------------
Q psy17386        160 VFYQLVEAAQYSSS--IN----KE--------------------IM---------HYTSEE-------------------  185 (276)
Q Consensus       160 IFYqllaG~~~~~~--l~----~~--------------------~~---------~~~~~d-------------------  185 (276)
                      ||||||+|+++++.  +.    +.                    |.         +|+++|                   
T Consensus       199 IFY~ll~g~~~~~~~~l~l~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~ee~~~i~~iLaaILhLGni~f  278 (730)
T d1w7ja2         199 IFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEF  278 (730)
T ss_dssp             HHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHcCCCHHHHHHhCCCChhhhhhhccCCCceeCCcchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHheeceeEE
Confidence            99999999985421  00    01                    10         333322                   


Q ss_pred             ----------------------------------------------------------hhhh------hhHHHHHHHHhh
Q psy17386        186 ----------------------------------------------------------KSHV------IWVFAWLVNHIN  201 (276)
Q Consensus       186 ----------------------------------------------------------~rda------~~LF~wlv~~iN  201 (276)
                                                                                .|||      ++||+|||.+||
T Consensus       279 ~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiv~~iN  358 (730)
T d1w7ja2         279 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN  358 (730)
T ss_dssp             EEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCcceeecCCHHHHHHHHHhhCCCHHHHHHhhheeeEeeccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                      3555      999999999999


Q ss_pred             hccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        202 TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       202 ~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                      ++|.++.....+||||||||||+|+.||||||||||||||||++|++++|..||++|++|||+|.+
T Consensus       359 ~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINy~NEkLq~~f~~~~F~~e~~~y~~EgI~~~~  424 (730)
T d1w7ja2         359 KALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTL  424 (730)
T ss_dssp             HHHCCSSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             hhccCccccccccceeeccCCcccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999887767789999999999999999999999999999999999999999999999999999864

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=1.5e-91  Score=709.12  Aligned_cols=267  Identities=46%  Similarity=0.721  Sum_probs=238.0

Q ss_pred             CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386          1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus         1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ||+|++||+||||+.+|+|+++++++|+++...++|||||+||++||+.|+.+++|||||+||||||||||++|+||+||
T Consensus        36 T~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          36 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EECSSSEEEECCSSCCTTCCHHHHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCC---------------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccc
Q psy17386         81 CSVTSNV---------------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQ  145 (276)
Q Consensus        81 ~~~~~~~---------------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEk  145 (276)
                      +.++++.               ...++++|++++|||||||||||.+|+||||||||++|+||.+|+|+||+|.+|||||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~n~iLeaFGnakT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~ylLEk  195 (710)
T d1br2a2         116 AVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEK  195 (710)
T ss_dssp             HHHHC------------------CHHHHHHTTHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCG
T ss_pred             HHHhccCCCccccccccccccccchHHHHHHHHHHHHHHhCCCccCCCCCCCCcceeeeeEEcCCCcEEEEEEEEecccC
Confidence            9887642               1358899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCchHHHHHHHhhcccChhHH------HHcc----------------------------CCChhh------
Q psy17386        146 SRITFQSPGERNYHVFYQLVEAAQYSSSIN------KEIM----------------------------HYTSEE------  185 (276)
Q Consensus       146 sRV~~~~~~ErnfHIFYqllaG~~~~~~l~------~~~~----------------------------~~~~~d------  185 (276)
                      |||+.+++||||||||||||+|++++..-.      +.|+                            +|++++      
T Consensus       196 sRv~~~~~~ErnfHIFY~ll~G~~~~~~~~l~l~~~~~y~yL~~~~~~~~~~~d~~~f~~l~~Al~~lGf~~~e~~~i~~  275 (710)
T d1br2a2         196 SRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILR  275 (710)
T ss_dssp             GGGTCCCTTCCCBHHHHHHHHHCCHHHHTTTTCCCTTTCTTSTTSCCCCSSCCHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             ceeeEecCCCCcceeHHHHHcCCCHHHHHhhhcCChhhceeccCCCcccCCccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999999999997431100      1111                            222221      


Q ss_pred             -----------------------------------------------------------------------hhhh-----
Q psy17386        186 -----------------------------------------------------------------------KSHV-----  189 (276)
Q Consensus       186 -----------------------------------------------------------------------~rda-----  189 (276)
                                                                                             .|||     
T Consensus       276 vlaaILhLGni~F~~~~~~~~~~~~~~~~~~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~~A~~~rdalak~L  355 (710)
T d1br2a2         276 VVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAK  355 (710)
T ss_dssp             HHHHHHHHHHCCCBCC----CCBCSCCHHHHHHHHHHTCCHHHHHHHHHCC----------CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcceeeeeccccccccccChHHHHHHHHHhcCCHHHHHhhheeeEEEecCcceecchhHHHHHHHHHHHHHHH
Confidence                                                                                   3555     


Q ss_pred             -hhHHHHHHHHhhhccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386        190 -IWVFAWLVNHINTCTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE  267 (276)
Q Consensus       190 -~~LF~wlv~~iN~~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~  267 (276)
                       ++||+|||++||++|.++. +...+||||||||||+|+.||||||||||||||||++|++++|..||++|++|||+|.+
T Consensus       356 Y~~LF~wiV~~iN~~l~~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINy~NE~Lq~~f~~~~f~~e~~~y~~EgI~~~~  435 (710)
T d1br2a2         356 FERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNF  435 (710)
T ss_dssp             HHHHHHHHHHHHHHHHC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHhccccccccceeeEEeecCccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence             9999999999999997643 34579999999999999999999999999999999999999999999999999998854

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=0.00084  Score=55.43  Aligned_cols=57  Identities=14%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..++|+-+...++--|=  -+.+..+.++..++...++++|.+|+|||+.++.+.+.+.
T Consensus        14 w~~ky~P~~~~diig~~--~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          14 WVEKYRPQRLDDIVGQE--HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHTCCCSTTTCCSCH--HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHccCcH--HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            46788877777776553  3345677777778778899999999999999999998764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.70  E-value=0.00057  Score=53.00  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=25.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+...|.++|.||||||+.++.+-+.|-.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35577999999999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0015  Score=53.58  Aligned_cols=57  Identities=18%  Similarity=0.166  Sum_probs=42.9

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +++|+-+...++.=|=-  +-+.++.++.......++++|.+|+|||+.++.+.+.+..
T Consensus         3 ~~ky~P~~~~diig~~~--~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~   59 (237)
T d1sxjd2           3 VEKYRPKNLDEVTAQDH--AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG   59 (237)
T ss_dssp             HHHTCCSSTTTCCSCCT--THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             chhhCCCCHHHccCcHH--HHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcC
Confidence            56777777766653321  2356777777777778999999999999999999998753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00067  Score=52.45  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=23.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .|+|+|.+|||||+.++.++++|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            48899999999999999999998864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.56  E-value=0.0011  Score=54.83  Aligned_cols=37  Identities=14%  Similarity=0.076  Sum_probs=31.3

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +-|......+...|.++|-||||||+.++.+.+.|..
T Consensus        14 ~~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~   50 (208)
T d1m7ga_          14 SERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVR   50 (208)
T ss_dssp             HHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3455667778899999999999999999999988753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00061  Score=51.73  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=22.0

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +|+++|.+|||||+.+|.+-+.|-
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            699999999999999999988873

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.48  E-value=0.00079  Score=52.10  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=23.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .++-|+|+|.||||||+.++.+.+.|-
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999988764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.36  E-value=0.00099  Score=51.49  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|+++|.+|||||+.++.+.+-|-
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            489999999999999999987763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00097  Score=51.63  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.|+|+|++|+|||+.++.+++.|...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            469999999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.33  E-value=0.0011  Score=50.68  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.7

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +.|+++|.||||||+.++.+++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999876643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0014  Score=50.76  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+-|+++|.+|||||+.++.+.+.|-
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567789999999999999999999874

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.22  E-value=0.0013  Score=51.49  Aligned_cols=25  Identities=40%  Similarity=0.553  Sum_probs=22.5

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |+|.|++|+|||+.+|.++..|..-
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            8999999999999999999987653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0033  Score=51.52  Aligned_cols=58  Identities=17%  Similarity=0.150  Sum_probs=42.1

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+++|+-+...++--|=  -+.+..+.+...+.-..++++|.+|+|||+.++.+.+-|..
T Consensus         5 w~eKyrP~~~~d~ig~~--~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2           5 WVEKYRPQVLSDIVGNK--ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             HHHHTCCSSGGGCCSCT--HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             hHhHhCCCCHHHhcCCH--HHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            46778877666654332  12344566666666677999999999999999999988764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.16  E-value=0.0016  Score=50.58  Aligned_cols=28  Identities=25%  Similarity=0.491  Sum_probs=24.4

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |.-|+|.|.+|||||+.++.+.+.|...
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4569999999999999999999988643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00081  Score=53.26  Aligned_cols=28  Identities=32%  Similarity=0.451  Sum_probs=24.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +...|+++|-||||||+.++.+-+.|-.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999888754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0045  Score=51.56  Aligned_cols=57  Identities=14%  Similarity=0.207  Sum_probs=40.4

Q ss_pred             HHHhhcCcCCCCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         24 VCEYHGAKMGSQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|+-+...++.=|= .+ -+.+..+.. .+-+++++++|++|+|||..++.+.+.|..
T Consensus         3 ~~KyrP~~~~dlig~~-~~-~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_           3 ARKWRPQTFADVVGQE-HV-LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             HHHTCCSSGGGSCSCH-HH-HHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             hhhhCCCCHHHccChH-HH-HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            4577777666665442 22 233444444 445889999999999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.11  E-value=0.0015  Score=52.42  Aligned_cols=29  Identities=17%  Similarity=0.227  Sum_probs=25.5

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+++.|++.|.+|||||+.++.+.+++-
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34678999999999999999999998863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.0048  Score=50.36  Aligned_cols=57  Identities=14%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++|+-+...++-=|-  -+-+..+.+...+.-..++++|.+|+|||+.++.+.+-+.
T Consensus         4 w~ekyrP~~~~divg~~--~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2           4 WVEKYRPETLDEVYGQN--EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHTCCSSGGGCCSCH--HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hhhhhCCCCHHHccCcH--HHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            45677766666654221  2334566666667667799999999999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.06  E-value=0.0015  Score=50.19  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .-|+++|.+|||||+.++.+.+.+-
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3599999999999999999988763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.93  E-value=0.0018  Score=49.98  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=23.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...-|+|+|.+|+|||+.++.+-+.+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998876

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.91  E-value=0.002  Score=49.90  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|+++|.+|||||+.++.+-+.|
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            39999999999999999987765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.79  E-value=0.0027  Score=49.98  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=23.0

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.|++.|.+|||||+.+|.+-+.|-
T Consensus         2 ~~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           2 TEPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999988764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0031  Score=50.93  Aligned_cols=24  Identities=46%  Similarity=0.548  Sum_probs=21.8

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |||+|.||||||+.++.+++.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            899999999999999999988653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.55  E-value=0.0032  Score=49.08  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |||.|.+|||||+.++.+-+.|..
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.48  E-value=0.0034  Score=50.34  Aligned_cols=23  Identities=39%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ||++|.||||||+.++.+++.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            99999999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.45  E-value=0.0037  Score=49.72  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +-||++|.||||||+.++.+++-+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            46899999999999999998887643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.43  E-value=0.004  Score=48.92  Aligned_cols=28  Identities=29%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             CceEE-EeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCV-ISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIi-isGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..-|| |+|.||||||+.++.+.+.|...
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34555 99999999999999999988764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.40  E-value=0.0074  Score=49.77  Aligned_cols=45  Identities=24%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHHhHhcCCCc----eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         39 VFALAEAAYSSLQNLDVNQ----SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~Q----sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +=.+++-+.+.+.....+.    .+++.|.+|+|||..++.+.+.|...
T Consensus        25 ~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~   73 (287)
T d1w5sa2          25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEA   73 (287)
T ss_dssp             HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhh
Confidence            4455555556665544433    35678999999999999999998653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0053  Score=48.88  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=24.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +.-|++.|-+|||||+.++.+.++|...
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4568999999999999999999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.37  E-value=0.0058  Score=47.64  Aligned_cols=27  Identities=15%  Similarity=0.048  Sum_probs=24.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      .|-|+|-+|||||+....++++|...+
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            467999999999999999999998654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.34  E-value=0.0056  Score=50.26  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=25.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ....++++.|++|+|||..++.+.+.|..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            45679999999999999999999998854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.33  E-value=0.0039  Score=48.17  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...-|+++|.+|||||+.++.+.+-|
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999998886654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.31  E-value=0.007  Score=49.71  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=24.8

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....++++++|.+|+|||..++.+.+.+-
T Consensus        32 ~~~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          32 GEVLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             TCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            34457899999999999999999988865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.27  E-value=0.0051  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |++.|.+|||||+.+|.+-+.|-
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            89999999999999999988873

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.25  E-value=0.0045  Score=49.29  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +--|++.|.+|||||+.++.+-+++-
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34599999999999999999988873

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.19  E-value=0.0057  Score=47.89  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+|.|.+|||||+.++.+.+.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998886

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0049  Score=49.45  Aligned_cols=23  Identities=17%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .-|||+|.||+|||+.++.+++-
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999998864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0061  Score=50.29  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=23.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....+++.|.+|+|||+.++.+.+.+-
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            346799999999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0065  Score=50.01  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=35.7

Q ss_pred             HhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         26 EYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        26 ~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +|+-+...++.-|--  ..+..+.+... +..+.++++|.+|+|||..++.+.+.|.
T Consensus         4 ky~P~~~~diig~~~--~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2           4 KYRPKSLNALSHNEE--LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             TTCCCSGGGCCSCHH--HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             ccCCCCHHHccCcHH--HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhc
Confidence            455555555554432  22333444433 3456799999999999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.0057  Score=48.88  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=22.9

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -..|+|.|.+|||||+.++.+.+++
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999987

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.0065  Score=47.90  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |+|.|.+|||||+.++.+.+.+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999999987

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.86  E-value=0.015  Score=50.53  Aligned_cols=27  Identities=22%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+|++.|.+|+|||+.+|.+-+.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            568999999999999999999988864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.86  E-value=0.0065  Score=53.60  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=26.7

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..++.+++.+++  |+++|..|||||+..+.++.++
T Consensus       157 ~~l~~~v~~~~n--ili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         157 SAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HHHHHHHHHTCC--EEEEESTTSSHHHHHHHHGGGS
T ss_pred             HHHHHHHHhCCC--EEEEeeccccchHHHHHHhhhc
Confidence            345556666655  9999999999999988887765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.85  E-value=0.0081  Score=46.81  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ||+.|.+|||||+.+|.+-+.|-
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78889999999999999988763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.02  Score=46.63  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=28.6

Q ss_pred             hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         50 LQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +...+-++++++.|..|+|||+.++.+.++|...
T Consensus        18 ~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~   51 (207)
T d1a5ta2          18 YQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ   51 (207)
T ss_dssp             HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             HHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccc
Confidence            3445568999999999999999999999998643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.69  E-value=0.0092  Score=47.08  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |+|.|.+|||||+.++.+.+.|-
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            89999999999999999999873

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.008  Score=49.38  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .-||++|.||+|||+..+.+++-.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            458999999999999999988764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0094  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|+|.|.+|||||+.++.+.+.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998876

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0076  Score=47.95  Aligned_cols=26  Identities=27%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ..+++.||++|-+|||||+.++.++.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999998887654

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0085  Score=48.46  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      |-|+|.+|||||+.++.+.+.|..
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            568999999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.009  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.0

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~   81 (276)
                      |++.|.+|||||+-++.+.+.+-
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999988863

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.53  E-value=0.018  Score=51.46  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ...-+|++.|.||.||||.+|.+-+++
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhc
Confidence            345779999999999999999998875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.51  E-value=0.011  Score=47.76  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.3

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -|.|.|.+|||||+.++.|-+.|-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            366889999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.39  E-value=0.021  Score=47.03  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=22.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+..|++.|.+|+|||+.++.+...+
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999888776

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.14  E-value=0.014  Score=46.18  Aligned_cols=24  Identities=29%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      -||+.|.+|||||+.++.+-+.+-
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478899999999999999988763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.014  Score=46.63  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|.|.|.+||||++.++.+.+.|-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999873

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.06  E-value=0.014  Score=46.52  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +...|++.|.+|||||+.++.+.+.+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45779999999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.013  Score=49.47  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=24.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ...+.|.|.|+||||||+..|.++..+.-
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            35688999999999999999999887653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.77  E-value=0.018  Score=46.67  Aligned_cols=24  Identities=38%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .|+++|..|||||+.++.+++++.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            378999999999999999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.71  E-value=0.01  Score=50.56  Aligned_cols=28  Identities=21%  Similarity=0.489  Sum_probs=24.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.|.|.|+||||||+.++.++.++.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            4678999999999999999999887754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.02  Score=45.12  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      |++.|..|||||+.++.+.+.+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8889999999999999998876

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.62  E-value=0.023  Score=46.32  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=22.8

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.|++.|++|+|||..++.+++-+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            56899999999999999999887765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.59  E-value=0.05  Score=44.57  Aligned_cols=41  Identities=17%  Similarity=0.018  Sum_probs=28.5

Q ss_pred             HHHHHHHhHhcC--CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         43 AEAAYSSLQNLD--VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        43 A~~Ay~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |-++.+.+....  ....++|.|++|+|||..++.+.+.+...
T Consensus        21 a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~   63 (213)
T d1l8qa2          21 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR   63 (213)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccC
Confidence            334444444332  22459999999999999999888887654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.017  Score=48.97  Aligned_cols=29  Identities=14%  Similarity=0.328  Sum_probs=25.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+.+.+.|.|+||||||+..|.++..+--
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence            56789999999999999999998887643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.52  E-value=0.023  Score=45.91  Aligned_cols=24  Identities=38%  Similarity=0.596  Sum_probs=19.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ....|+|+|+||+|||+.+-.+++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            357899999999999998766554

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.48  E-value=0.017  Score=46.74  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ....++|+|.||+|||+.+-.+++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999998766554

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.48  E-value=0.021  Score=45.82  Aligned_cols=24  Identities=33%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ..+.++|+|.||+|||+.+-.+++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999997755444

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.43  E-value=0.019  Score=48.52  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..+.++..+.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4568899999999999999988877754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.39  E-value=0.019  Score=46.01  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.8

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL   80 (276)
                      -|++.|.+|||||+.++.+.+.+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999998875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.25  E-value=0.035  Score=45.07  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=33.1

Q ss_pred             HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      -.+.+...+...++++.|++|+|||+.++.+.+++...
T Consensus         5 ~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~   42 (198)
T d2gnoa2           5 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKF   42 (198)
T ss_dssp             HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            35677788899999999999999999999999988654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.18  E-value=0.057  Score=45.17  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             CCCchhHHHHHHH---HHhHhc--CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         35 QEPHVFALAEAAY---SSLQNL--DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        35 ~pPHifavA~~Ay---~~m~~~--~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+||-.+-+++-   ..+...  ....+|++.|++|+|||..++.+-+.+
T Consensus        14 ~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          14 WGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcc
Confidence            3455555555543   222221  134689999999999999999887764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.07  E-value=0.03  Score=45.78  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=22.7

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...++++|.+|.|||+.++.+.+.+-
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999988763

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=93.01  E-value=0.029  Score=41.05  Aligned_cols=28  Identities=29%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             CCceEEEeCCCCCChhHHH-HHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETT-KFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~-k~il~yL~~   82 (276)
                      +.|..++.+++|||||..+ ..+++++..
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~   34 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAECAR   34 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHhhh
Confidence            4688999999999999776 355566544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.97  E-value=0.029  Score=47.33  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=23.5

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|+||||||+..|.+.-.+.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4568899999999999999888776653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.80  E-value=0.028  Score=50.59  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ....=-||++|.+|||||++...+++++-
T Consensus       155 ~~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         155 KRPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            34456799999999999999999988863

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.78  E-value=0.014  Score=46.18  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..++--|+|.|-.|||||+.++.+-++|-
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44556799999999999999999888774

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.77  E-value=0.031  Score=46.87  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      .+...+.+.|+||||||+..+.+.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~   52 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIG   52 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCCcchhhHhcc
Confidence            356789999999999999876543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.76  E-value=0.028  Score=48.40  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.|.|+||||||+..|.|+..+-
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            4568999999999999999998876553

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=92.61  E-value=0.034  Score=46.96  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      +.+.+.+.|+||||||+..|.+.-.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            4578999999999999988876543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.03  Score=47.27  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      .+...+.|.|+||||||+.+|.+.-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            34578899999999999987776554

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.57  E-value=0.036  Score=44.02  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=22.7

Q ss_pred             EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         59 CVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |+|.|--|||||+.++.+.++|...
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            8899999999999999999998653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.039  Score=46.31  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.+.|+||||||+..+.+.-.+
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            356789999999999999888765543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.33  E-value=0.029  Score=45.74  Aligned_cols=28  Identities=32%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|++|||||+..|.+...+.
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            3567899999999999999888866654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.27  E-value=0.02  Score=48.81  Aligned_cols=28  Identities=21%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+.|.|+||||||+..|.++..+.
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            4678999999999999999888777554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.043  Score=42.35  Aligned_cols=32  Identities=19%  Similarity=0.127  Sum_probs=23.6

Q ss_pred             HHhHhcC--CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         48 SSLQNLD--VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        48 ~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..++..+  ..+.++|+|++|+|||..+-.++-.
T Consensus        13 D~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          13 DKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             HHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            3455433  6789999999999999876655544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.98  E-value=0.062  Score=44.17  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+.+.|++.|.+|+|||+++-++-.++...
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~   33 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL   33 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            356789999999999999988777777643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.97  E-value=0.032  Score=44.05  Aligned_cols=21  Identities=24%  Similarity=0.521  Sum_probs=17.3

Q ss_pred             EEEeCCCCCChhHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~y   79 (276)
                      |-|+|.+|||||+.++.+-++
T Consensus         6 IgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHC
Confidence            448999999999999877553

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.048  Score=44.37  Aligned_cols=28  Identities=25%  Similarity=0.494  Sum_probs=24.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      --|+|.|.-|||||+.++.+.++|...+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g   31 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAG   31 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            3588899999999999999999998643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.71  E-value=0.049  Score=46.31  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ++.+.+-|.|+||||||+.++.+.-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            45678999999999999988877643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.69  E-value=0.042  Score=46.38  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=20.5

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ..+.+.|+||||||+..|.+.-.+.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            3667899999999999888877653

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.43  E-value=0.061  Score=46.87  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             HHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         43 AEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      +.......+..+.+.+|+..|.+|||||.++
T Consensus        72 ~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          72 IKPLIIDLYENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             THHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEeeeccccccceee
Confidence            3444445556788999999999999999984

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.42  E-value=0.074  Score=48.57  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .-|++.|+||+|||+.+|.+-+.|
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999998876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=91.41  E-value=0.038  Score=46.35  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.+.|+||||||+..+.+.-.+
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            456789999999999999988776654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.11  E-value=0.13  Score=44.47  Aligned_cols=25  Identities=36%  Similarity=0.464  Sum_probs=22.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .++++.|.+|+|||+.+|.+-+.+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc
Confidence            4799999999999999999999874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.02  E-value=0.066  Score=42.90  Aligned_cols=27  Identities=33%  Similarity=0.498  Sum_probs=24.1

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .-|+|.|--|||||+-++.+.++|...
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            358999999999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.94  E-value=0.035  Score=46.96  Aligned_cols=27  Identities=33%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+.+.+.+.|+||||||+..+.+.-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            456889999999999999888776543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.87  E-value=0.094  Score=43.24  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+..|++.|.+|+|||+++-++-.++..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~   37 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD   37 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34567899999999999998777777654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.084  Score=44.52  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+..|++.|.+|+|||..++.+.+.+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            467899999999999999999988764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=90.73  E-value=0.074  Score=42.00  Aligned_cols=26  Identities=35%  Similarity=0.414  Sum_probs=22.3

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -.|.+.|+=|||||+-+|-+++.|..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc
Confidence            35778999999999999999988753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.074  Score=42.81  Aligned_cols=32  Identities=19%  Similarity=0.059  Sum_probs=24.8

Q ss_pred             HHhHhcC--CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         48 SSLQNLD--VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        48 ~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..++..+  ..+.++|.|++|+|||..+..++..
T Consensus        27 D~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          27 DKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             HHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3455543  6789999999999999987766654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=90.72  E-value=0.071  Score=39.76  Aligned_cols=20  Identities=25%  Similarity=0.248  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+....+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~   21 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLK   21 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999876653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.08  Score=43.66  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=23.0

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ..+..|++.|.+|+|||+++-++-.++..
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~   35 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQ   35 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34567888999999999998777766653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.63  E-value=0.074  Score=44.57  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+..|++.|.+|+|||..++.+.+.+.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhC
Confidence            456899999999999999998888753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.63  E-value=0.056  Score=43.20  Aligned_cols=27  Identities=19%  Similarity=0.163  Sum_probs=20.8

Q ss_pred             HhHhcC--CCceEEEeCCCCCChhHHHHH
Q psy17386         49 SLQNLD--VNQSCVISGESGAGKTETTKF   75 (276)
Q Consensus        49 ~m~~~~--~~QsIiisGeSGsGKTe~~k~   75 (276)
                      .++..+  +.+.++|+|++|+|||..+..
T Consensus        25 ~ll~GGi~~G~~~li~G~pGsGKT~l~lq   53 (251)
T d1szpa2          25 TLLGGGVETGSITELFGEFRTGKSQLCHT   53 (251)
T ss_dssp             HHHTSSEESSSEEEEEESTTSSHHHHHHH
T ss_pred             hhhCCCCcCCeEEEEEcCCCCCHHHHHHH
Confidence            444443  789999999999999985544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.43  E-value=0.18  Score=43.63  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=22.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ++++.|.+|+|||+.+|.+-+.|.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            788999999999999999999884

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.18  E-value=0.054  Score=46.89  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -|-|+|-||||||+.++.+.+.|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            5889999999999999999888764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.10  E-value=0.097  Score=43.08  Aligned_cols=28  Identities=18%  Similarity=0.301  Sum_probs=18.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .+..|++.|.+|+|||+++-++-.++..
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~   38 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKK   38 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4556888999999999998777677654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.02  E-value=0.12  Score=42.26  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=22.8

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ...|++.|.+|+|||+++-++-.++...
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~   37 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGK   37 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            3457789999999999998887777654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.01  E-value=0.084  Score=42.63  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=24.0

Q ss_pred             HHhHhcC--CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         48 SSLQNLD--VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        48 ~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..|+..+  +.+.++|+|++|+|||..+-.++..
T Consensus        26 D~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          26 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3455554  7899999999999999976554443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.98  E-value=0.096  Score=45.15  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      -|=|+|-+|||||+.++.+.++|...
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~   54 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEK   54 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            34489999999999999999998653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.81  E-value=0.072  Score=47.14  Aligned_cols=32  Identities=13%  Similarity=0.082  Sum_probs=26.1

Q ss_pred             hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         52 NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ....++.++|.|.||||||++.+.++..+...
T Consensus        46 ~~~~~~H~~I~G~tGsGKT~~l~~li~~~~~~   77 (433)
T d1e9ra_          46 RDAEPRHLLVNGATGTGKSVLLRELAYTGLLR   77 (433)
T ss_dssp             GGGGGGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcccceEEEEeCCCCcHHHHHHHHHHHHHhC
Confidence            34556789999999999999998888776653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.77  E-value=0.09  Score=44.32  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..-.|+++|.+|+|||..++.+...+
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHh
Confidence            34579999999999999999988875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=89.55  E-value=0.096  Score=43.83  Aligned_cols=28  Identities=32%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+.+.+.+.|++|||||+..+.+.-.+.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3567899999999999999888766653

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.13  Score=44.72  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+=-|-|+|.||||||+.++.+-..|...
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            34467799999999999999999998643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=89.46  E-value=0.1  Score=43.71  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      +-.|++.|.+|+|||..+|.+.+.+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHc
Confidence            4579999999999999999988765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=89.42  E-value=0.079  Score=44.05  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~   78 (276)
                      ++-+.+-+.|++|||||+..+.+.-
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3568899999999999998776654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.36  E-value=0.12  Score=41.69  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=24.7

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      +...++|.|++|+|||..+..++...+..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~   53 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACAN   53 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            56889999999999999998888776643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.12  E-value=0.2  Score=44.24  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             HHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         45 AAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        45 ~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++.+..+ ....++++.|.+|+|||..++.+.+++-
T Consensus       142 ~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            344444433 2445999999999999999999999975

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.096  Score=42.43  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=24.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      ++-|+|-|--|||||+.++.+-++|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            567999999999999999999999864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=88.95  E-value=0.097  Score=41.99  Aligned_cols=20  Identities=25%  Similarity=0.473  Sum_probs=16.3

Q ss_pred             EEEeCCCCCChhHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~   78 (276)
                      |-|+|.+|||||+.++.+-+
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            55899999999998875543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.25  Score=42.47  Aligned_cols=44  Identities=20%  Similarity=0.105  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         40 FALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        40 favA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ..+.-++...|.--.+-|.+.|.|.+|+|||+.+..+.+.....
T Consensus        27 ~~~~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          27 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             THHHHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             ccccceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            34556888889888899999999999999999999999987653

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.17  Score=43.73  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             cCCCceEEEeCCCCCChhHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .+.|-+|+..|.+|||||.++
T Consensus        73 ~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          73 EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             cCCCcceeeecccCCCCceec
Confidence            567999999999999999984

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.58  E-value=0.12  Score=40.95  Aligned_cols=26  Identities=23%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ..+.++|.|++|+|||..+..+.-.+
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67899999999999998766655544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.40  E-value=0.13  Score=39.38  Aligned_cols=20  Identities=20%  Similarity=0.401  Sum_probs=17.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      +|++.|.+|+|||+..+.++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999888765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.043  Score=44.38  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=22.4

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      -|+|-|..|||||+.++.+-++|-.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4899999999999999999988753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.11  Score=41.73  Aligned_cols=20  Identities=20%  Similarity=0.453  Sum_probs=16.4

Q ss_pred             EEEeCCCCCChhHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~   78 (276)
                      |-|+|..|||||+.++.+-+
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            55899999999998876543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.14  E-value=0.12  Score=41.98  Aligned_cols=26  Identities=23%  Similarity=0.334  Sum_probs=22.8

Q ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         57 QSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      --|+|.|--|||||+-++.+.++|..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            35899999999999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.10  E-value=0.12  Score=43.50  Aligned_cols=27  Identities=26%  Similarity=0.433  Sum_probs=22.3

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      +.+.+-+.|++|||||+..|.+.-.+.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            457889999999999999888766643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.01  E-value=0.35  Score=40.55  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL   80 (276)
                      ....|.|.|..|.|||+.++.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            45678899999999999999998873

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=87.48  E-value=0.23  Score=40.95  Aligned_cols=30  Identities=13%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      ++.+.++|.|.||+|||+.+..+...++..
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~   62 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhh
Confidence            467899999999999999888777666543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.27  Score=41.70  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             HhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         51 QNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.++..+.+++.|++|.|||....-+.+-+..
T Consensus        34 L~r~~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          34 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            34555678999999999999998888877665

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.29  E-value=0.15  Score=39.73  Aligned_cols=18  Identities=22%  Similarity=0.363  Sum_probs=16.1

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999987765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.25  E-value=0.17  Score=38.77  Aligned_cols=19  Identities=32%  Similarity=0.242  Sum_probs=16.1

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         8 i~vvG~~~vGKTsLi~~l~   26 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYA   26 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999766543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=87.07  E-value=0.18  Score=42.02  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=22.3

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      ...+.+-+.|++|||||+..+.+.-.+.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3457788999999999999887766643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=87.03  E-value=0.18  Score=37.50  Aligned_cols=18  Identities=39%  Similarity=0.440  Sum_probs=15.7

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||+..+.+
T Consensus         8 I~ivG~~~vGKSSLi~~~   25 (169)
T d1upta_           8 ILILGLDGAGKTTILYRL   25 (169)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999976654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.87  E-value=0.13  Score=40.93  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=21.6

Q ss_pred             HHHHHHhHhcCCCceEEEeCCCCCChhHHHHH
Q psy17386         44 EAAYSSLQNLDVNQSCVISGESGAGKTETTKF   75 (276)
Q Consensus        44 ~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~   75 (276)
                      .+|+..+..   .+++++.+++|||||+.+-.
T Consensus        31 ~~ai~~l~~---~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          31 AEAVEKVFS---GKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHHHHHHTT---CSCEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHHHc---CCCEEEEcCCCCchhHHHHH
Confidence            345555554   35699999999999998744

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=0.2  Score=36.83  Aligned_cols=20  Identities=25%  Similarity=0.317  Sum_probs=16.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      -|++.|.+|+|||.....++
T Consensus         2 KI~liG~~nvGKSSLln~l~   21 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLK   21 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999776544

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=86.24  E-value=0.27  Score=42.93  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=24.5

Q ss_pred             chhH-HHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFA-LAEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 Hifa-vA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||. ++......++ .+.+-+|+..|.+|||||.++
T Consensus        62 ~vy~~~~~plv~~~l-~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          62 DIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             HHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHhh-ccCceeEEecccCCCCcceee
Confidence            3553 2333333443 567899999999999999974

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.06  E-value=0.23  Score=39.23  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=16.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      +|++.|.+|+|||.....++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~   21 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLL   21 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999766554

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=85.99  E-value=0.29  Score=42.64  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             hcCCCceEEEeCCCCCChhHHH
Q psy17386         52 NLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        52 ~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ..+.|.+|+..|.+|||||.++
T Consensus        83 l~G~n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          83 FEGYNVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             HhccCceeeeeccCCCCCceee
Confidence            3577999999999999999973

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.86  E-value=0.22  Score=41.43  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=21.7

Q ss_pred             CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ..+.-|+|.||.|+|||..++.|-++
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            34566999999999999999888664

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=85.85  E-value=0.28  Score=42.69  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             chhHH-HHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFAL-AEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 Hifav-A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||.- +......++ .+.+-+|+..|.+|||||.++
T Consensus        63 ~vy~~~~~~lv~~~l-~G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          63 DVYRSVVCPILDEVI-MGYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             HHHHHHHHHHHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred             HHHHHHHHHhHHHHh-ccCCceEEeeeeccccceEEe
Confidence            35643 333333333 577899999999999999974

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.23  Score=37.86  Aligned_cols=19  Identities=32%  Similarity=0.291  Sum_probs=16.0

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         6 ivlvG~~~vGKTsLi~r~~   24 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYC   24 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999766543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.24  Score=37.70  Aligned_cols=19  Identities=26%  Similarity=0.401  Sum_probs=15.7

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         7 ivlvG~~~vGKTsli~~~~   25 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFT   25 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8899999999999755543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.54  E-value=0.2  Score=38.94  Aligned_cols=19  Identities=32%  Similarity=0.450  Sum_probs=15.8

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|++|+|||...+.++
T Consensus         5 ivliG~~~vGKTsli~r~~   23 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFA   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7999999999999765443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.44  E-value=0.24  Score=37.41  Aligned_cols=18  Identities=33%  Similarity=0.399  Sum_probs=15.4

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         5 v~liG~~~vGKTsLl~~~   22 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRF   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            889999999999976554

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.40  E-value=0.21  Score=44.09  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ||.........++ .+.|-+|+..|.+|||||.++
T Consensus       109 Vy~~v~plv~~vl-~G~n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         109 IFEMVSPLIQSAL-DGYNICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             HHTTTHHHHHHHH-TTCEEEEEEECSTTSSHHHHH
T ss_pred             hHHHHHHHHHHHh-cccceeEEeeccCCCccceEe
Confidence            4443333444444 577999999999999999984

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.28  E-value=0.52  Score=36.62  Aligned_cols=41  Identities=24%  Similarity=0.515  Sum_probs=26.4

Q ss_pred             CCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         36 EPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        36 pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .|..|..  +++..+..  +  -.|+.+.+|||||..+-.++.+...
T Consensus         9 ~pr~~Q~--~~~~~~~~--~--n~lv~~pTGsGKT~i~~~~~~~~~~   49 (200)
T d1wp9a1           9 QPRIYQE--VIYAKCKE--T--NCLIVLPTGLGKTLIAMMIAEYRLT   49 (200)
T ss_dssp             CCCHHHH--HHHHHGGG--S--CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHH--HHHHHHhc--C--CeEEEeCCCCcHHHHHHHHHHHHHH
Confidence            4555543  35555432  2  2667789999999987777666554

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=0.25  Score=37.54  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=15.7

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      -|++.|.+|+|||...+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~   23 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4899999999999975543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.16  E-value=0.17  Score=38.38  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=18.1

Q ss_pred             CCCceEEEeCCCCCChhHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      ++.=-|++.|.+|+|||+....+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l   33 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHML   33 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHH
Confidence            44556999999999999975443

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=85.07  E-value=0.29  Score=42.49  Aligned_cols=35  Identities=29%  Similarity=0.236  Sum_probs=24.8

Q ss_pred             chhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         38 HVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        38 HifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .||.-.......++ .+.+.+|+..|.+|||||.++
T Consensus        66 ~vy~~v~~~v~~~l-~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          66 DVFKEVGQLVQSSL-DGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             HHHHHHHHHHGGGG-GTCCEEEEEECCTTSSHHHHH
T ss_pred             HHHHHhhhhhcchh-cccccceeeeeccCCcccccc
Confidence            45643333333343 457999999999999999986

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=0.26  Score=37.64  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=16.3

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      -|++.|.+|+|||.....++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            38899999999999765543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.23  Score=37.83  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=15.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|++|+|||.....++
T Consensus         6 i~viG~~~vGKTsli~~l~   24 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLI   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8999999999999766543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.90  E-value=0.27  Score=37.33  Aligned_cols=19  Identities=21%  Similarity=0.343  Sum_probs=15.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         5 v~liG~~~vGKSsLi~rl~   23 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYC   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999766443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.83  E-value=0.27  Score=37.71  Aligned_cols=19  Identities=26%  Similarity=0.405  Sum_probs=15.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         6 ivvvG~~~vGKTsli~r~~   24 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFT   24 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            8899999999999766543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.23  Score=37.97  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=16.3

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      -|++.|.+|+|||.....++
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~   26 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFI   26 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38999999999999765443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.72  E-value=0.27  Score=37.69  Aligned_cols=19  Identities=32%  Similarity=0.515  Sum_probs=15.6

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      -|++.|.+|+|||...+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~   24 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQF   24 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4889999999999975544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.70  E-value=0.37  Score=36.21  Aligned_cols=31  Identities=10%  Similarity=0.080  Sum_probs=26.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~~   85 (276)
                      +-=+|+++|-|||||+..++.++.-|....+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G   35 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGG   35 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCS
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            3447999999999999999999888887644

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=84.63  E-value=0.28  Score=37.21  Aligned_cols=19  Identities=26%  Similarity=0.291  Sum_probs=15.4

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      -|++.|.+|+|||.....+
T Consensus         4 ki~i~G~~~~GKTsLl~~l   22 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVI   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3889999999999965543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.60  E-value=0.24  Score=37.86  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=15.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         8 i~lvG~~~vGKTsLi~~l~   26 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFT   26 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999765543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.60  E-value=0.24  Score=37.58  Aligned_cols=18  Identities=28%  Similarity=0.403  Sum_probs=15.7

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         5 i~vvG~~~vGKTSli~~l   22 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRF   22 (166)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            789999999999977654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=84.50  E-value=0.34  Score=38.04  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~y   79 (276)
                      ....++|.|++|+|||..+..++-.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999987654443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.36  E-value=0.51  Score=38.16  Aligned_cols=32  Identities=25%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             HhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         51 QNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.++....+++.|++|.|||....-+.+-++.
T Consensus        38 L~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             HhccCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            44455568999999999999999888887764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=84.34  E-value=0.24  Score=37.63  Aligned_cols=23  Identities=26%  Similarity=0.305  Sum_probs=18.2

Q ss_pred             CCCceEEEeCCCCCChhHHHHHH
Q psy17386         54 DVNQSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~k~i   76 (276)
                      ++.=-|++.|.+|+|||+....+
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl   35 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQF   35 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHH
Confidence            34456999999999999976654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.30  E-value=0.49  Score=38.93  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=22.1

Q ss_pred             CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         55 VNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      .+..++|.|-.|||||+++-..+.||...
T Consensus        13 ~~~~~lI~g~aGTGKTt~l~~rv~~ll~~   41 (306)
T d1uaaa1          13 VTGPCLVLAGAGSGKTRVITNKIAHLIRG   41 (306)
T ss_dssp             CSSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCCccHHHHHHHHHHHHHHh
Confidence            34557888999999999877666676543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.30  E-value=0.29  Score=37.89  Aligned_cols=19  Identities=37%  Similarity=0.581  Sum_probs=16.1

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||+....++
T Consensus         5 v~vvG~~~vGKSSLi~~l~   23 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYV   23 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8899999999999866543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.20  E-value=0.29  Score=37.46  Aligned_cols=19  Identities=21%  Similarity=0.501  Sum_probs=16.1

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         9 I~vvG~~~vGKSSli~~~~   27 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYV   27 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8999999999999765554

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=0.29  Score=37.84  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=16.5

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      -|++.|.+|+|||...+.++
T Consensus         7 KivviG~~~vGKTsli~~~~   26 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYT   26 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38999999999999766554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.16  E-value=0.26  Score=37.97  Aligned_cols=19  Identities=21%  Similarity=0.349  Sum_probs=16.1

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      -||+.|.+|+|||...+.+
T Consensus         4 Kiv~lG~~~vGKTsll~r~   22 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQM   22 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3899999999999976654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.15  E-value=0.27  Score=40.77  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=18.9

Q ss_pred             CCceEEEeCCCCCChhHHHHHHH
Q psy17386         55 VNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        55 ~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ++++.++.|.||+|||+....++
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHS
T ss_pred             cCCeEEEECCCCCCHHHHHHhhc
Confidence            46889999999999999765543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.13  E-value=0.28  Score=36.08  Aligned_cols=20  Identities=20%  Similarity=0.337  Sum_probs=17.1

Q ss_pred             CCCceEEEeCCCCCChhHHH
Q psy17386         54 DVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        54 ~~~QsIiisGeSGsGKTe~~   73 (276)
                      +..|..++.+..|||||+..
T Consensus         6 ~~~~~~ll~apTGsGKT~~~   25 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKV   25 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHH
T ss_pred             cCCCEEEEEeCCCCCHHHHH
Confidence            45699999999999999753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.04  E-value=0.28  Score=37.70  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=16.7

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      -|++.|.+|+|||.....++
T Consensus         7 ~I~lvG~~~~GKSSLin~l~   26 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLL   26 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999999776653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.90  E-value=0.31  Score=37.15  Aligned_cols=19  Identities=32%  Similarity=0.392  Sum_probs=15.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         9 i~vvG~~~vGKTsli~~~~   27 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFK   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999765543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=83.77  E-value=0.48  Score=39.29  Aligned_cols=44  Identities=18%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             CCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHH
Q psy17386         34 SQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        34 ~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il   77 (276)
                      ++|++.=.--.+-...+... ...=.|++.|.+|+|||+....|+
T Consensus         9 ~~~~~~~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_           9 TFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHh
Confidence            34544433222333344333 234579999999999999877665

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=83.73  E-value=0.28  Score=43.18  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=24.4

Q ss_pred             hhH-HHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386         39 VFA-LAEAAYSSLQNLDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        39 ifa-vA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~   73 (276)
                      ||. ++......++ .+.|-+|+..|.+|||||.++
T Consensus        97 Vy~~~~~plv~~~l-~G~n~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_          97 VYRFTARPLVQTIF-EGGKATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             HHHHTTHHHHHHHH-TTCEEEEEEEESTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHH-hccCceEEeeccCCCCCceee
Confidence            553 2333444444 467899999999999999984

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=83.68  E-value=0.26  Score=43.39  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=19.0

Q ss_pred             cCCCceEEEeCCCCCChhHHH
Q psy17386         53 LDVNQSCVISGESGAGKTETT   73 (276)
Q Consensus        53 ~~~~QsIiisGeSGsGKTe~~   73 (276)
                      .+.|-+|+..|.+|||||.++
T Consensus        72 ~G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          72 DGYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             TTCEEEEEEECSTTSSHHHHH
T ss_pred             cCCceeeeccccCCCCccccc
Confidence            567999999999999999985

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=0.31  Score=37.09  Aligned_cols=17  Identities=24%  Similarity=0.374  Sum_probs=14.5

Q ss_pred             EEEeCCCCCChhHHHHH
Q psy17386         59 CVISGESGAGKTETTKF   75 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~   75 (276)
                      |++.|.+|+|||.....
T Consensus         5 i~viG~~~vGKTsLi~r   21 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLR   21 (171)
T ss_dssp             EEEECCTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            88999999999996543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=83.40  E-value=0.33  Score=37.07  Aligned_cols=18  Identities=28%  Similarity=0.507  Sum_probs=15.3

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         7 ivlvG~~~vGKTsli~~~   24 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQF   24 (168)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            899999999999965544

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.37  E-value=0.33  Score=36.84  Aligned_cols=19  Identities=21%  Similarity=0.433  Sum_probs=16.0

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         7 i~lvG~~~vGKTsli~rl~   25 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFV   25 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999766544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.36  E-value=0.26  Score=40.17  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=18.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFILQY   79 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~y   79 (276)
                      .+||+|=-|||||+..+.+++.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4789999999999987777764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=0.3  Score=36.91  Aligned_cols=19  Identities=32%  Similarity=0.405  Sum_probs=15.9

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||...+.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~   21 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFM   21 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999766543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.22  E-value=0.31  Score=39.36  Aligned_cols=20  Identities=20%  Similarity=0.385  Sum_probs=16.8

Q ss_pred             ceEEEeCCCCCChhHHHHHH
Q psy17386         57 QSCVISGESGAGKTETTKFI   76 (276)
Q Consensus        57 QsIiisGeSGsGKTe~~k~i   76 (276)
                      --|++.|.+|+|||...+.+
T Consensus         7 ~KilllG~~~vGKTsll~~~   26 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQM   26 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            45999999999999876654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.20  E-value=1.1  Score=35.89  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         40 FALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        40 favA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      +.+=+.|...++.+   .++++.+.+|+|||+..-..+-++..
T Consensus        45 ~~~Q~~~i~~~l~g---~~~~i~apTGsGKT~~~~~~~~~~~~   84 (237)
T d1gkub1          45 RAIQKMWAKRILRK---ESFAATAPTGVGKTSFGLAMSLFLAL   84 (237)
T ss_dssp             CHHHHHHHHHHHTT---CCEECCCCBTSCSHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHCC---CCEEEEecCCChHHHHHHHHHHHHHH
Confidence            55556666666543   56999999999999987666655543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.10  E-value=0.35  Score=36.76  Aligned_cols=17  Identities=29%  Similarity=0.395  Sum_probs=14.3

Q ss_pred             EEEeCCCCCChhHHHHH
Q psy17386         59 CVISGESGAGKTETTKF   75 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~   75 (276)
                      |++.|.+|+|||...+.
T Consensus         6 i~vvG~~~vGKTsLi~~   22 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLR   22 (170)
T ss_dssp             EEEECSTTSSHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHH
Confidence            78999999999985443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.98  E-value=0.31  Score=36.96  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=15.8

Q ss_pred             eEEEeCCCCCChhHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFI   76 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~i   76 (276)
                      -|++.|.+|+|||.....+
T Consensus         6 Kv~liG~~~vGKTsLl~~~   24 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQF   24 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHH
Confidence            4899999999999975544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=82.86  E-value=0.32  Score=36.66  Aligned_cols=18  Identities=33%  Similarity=0.331  Sum_probs=15.3

Q ss_pred             eEEEeCCCCCChhHHHHH
Q psy17386         58 SCVISGESGAGKTETTKF   75 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~   75 (276)
                      -|++.|.+|+|||.....
T Consensus         4 ki~ivG~~~~GKTsLi~~   21 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKK   21 (165)
T ss_dssp             EEEEECSTTSSHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            389999999999986554

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=82.84  E-value=0.43  Score=41.89  Aligned_cols=29  Identities=38%  Similarity=0.504  Sum_probs=24.5

Q ss_pred             CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386         56 NQSCVISGESGAGKTETTKFILQYLCSVT   84 (276)
Q Consensus        56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~   84 (276)
                      +.-.+|+|..|+|||++...++..|....
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~~~  191 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQMA  191 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHHTC
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHHHH
Confidence            35789999999999999998888887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=82.78  E-value=0.3  Score=36.51  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=15.9

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|++.|.+|+|||+....++
T Consensus         3 kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            48999999999998655443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.75  E-value=0.32  Score=37.35  Aligned_cols=17  Identities=35%  Similarity=0.399  Sum_probs=14.6

Q ss_pred             EEEeCCCCCChhHHHHH
Q psy17386         59 CVISGESGAGKTETTKF   75 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~   75 (276)
                      |++.|.+|+|||.....
T Consensus         5 ivvvG~~~vGKTsLi~~   21 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIV   21 (177)
T ss_dssp             EEEEESTTSSHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHH
Confidence            78999999999987544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.72  E-value=0.37  Score=36.69  Aligned_cols=19  Identities=37%  Similarity=0.567  Sum_probs=16.0

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         5 i~~vG~~~vGKSsLi~~~~   23 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYV   23 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8899999999999766543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=0.4  Score=37.29  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=16.5

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|+|.|.+|+|||+....++
T Consensus         5 ~V~lvG~~n~GKTSLln~l~   24 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLT   24 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999655543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=0.32  Score=37.80  Aligned_cols=17  Identities=35%  Similarity=0.585  Sum_probs=14.3

Q ss_pred             EEEeCCCCCChhHHHHH
Q psy17386         59 CVISGESGAGKTETTKF   75 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~   75 (276)
                      |++.|.+|+|||...+.
T Consensus        12 i~lvG~~~vGKTsLi~r   28 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMS   28 (185)
T ss_dssp             EEEEECTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            88999999999985443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.46  E-value=0.39  Score=36.47  Aligned_cols=18  Identities=33%  Similarity=0.482  Sum_probs=15.2

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         6 ivvvG~~~vGKTsli~r~   23 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQF   23 (167)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            899999999999865544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.46  E-value=0.36  Score=37.31  Aligned_cols=18  Identities=33%  Similarity=0.340  Sum_probs=15.2

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l   25 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRY   25 (186)
T ss_dssp             EEEESCTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            889999999999976543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=0.33  Score=37.04  Aligned_cols=18  Identities=22%  Similarity=0.423  Sum_probs=15.3

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         8 I~lvG~~~vGKTsll~~~   25 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQF   25 (174)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            899999999999866544

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.19  E-value=0.34  Score=37.15  Aligned_cols=18  Identities=33%  Similarity=0.460  Sum_probs=15.1

Q ss_pred             eEEEeCCCCCChhHHHHH
Q psy17386         58 SCVISGESGAGKTETTKF   75 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~   75 (276)
                      -|++.|.+|+|||.....
T Consensus         8 Kv~lvG~~~vGKTsLi~r   25 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQ   25 (173)
T ss_dssp             EEEEEECTTSSHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHH
Confidence            489999999999986544

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.16  E-value=0.37  Score=36.74  Aligned_cols=17  Identities=24%  Similarity=0.599  Sum_probs=14.5

Q ss_pred             EEEeCCCCCChhHHHHH
Q psy17386         59 CVISGESGAGKTETTKF   75 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~   75 (276)
                      |++.|.+|+|||...+.
T Consensus         4 i~lvG~~~vGKTsLi~~   20 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARI   20 (168)
T ss_dssp             EEEECCTTSSHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHH
Confidence            78999999999986544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.04  E-value=0.4  Score=36.60  Aligned_cols=18  Identities=22%  Similarity=0.364  Sum_probs=15.5

Q ss_pred             eEEEeCCCCCChhHHHHH
Q psy17386         58 SCVISGESGAGKTETTKF   75 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~   75 (276)
                      -|++.|.+|+|||...+.
T Consensus         4 KivllG~~~vGKTsl~~r   21 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQ   21 (195)
T ss_dssp             EEEEECSTTSSHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            389999999999997654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=0.12  Score=39.33  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=17.6

Q ss_pred             EEEeCCCCCChhHHHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQYL   80 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~yL   80 (276)
                      .+|.|+.|||||.....|.--|
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999887776444

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.78  E-value=0.36  Score=37.82  Aligned_cols=19  Identities=26%  Similarity=0.300  Sum_probs=15.8

Q ss_pred             EEEeCCCCCChhHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFIL   77 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il   77 (276)
                      |++.|.+|+|||.....++
T Consensus         9 ivvvG~~~vGKTsli~~l~   27 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFS   27 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            8899999999999665543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=81.74  E-value=0.31  Score=37.52  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=23.3

Q ss_pred             HHHHHhHhcCCCceEEEeCCCCCChhHHHHH
Q psy17386         45 AAYSSLQNLDVNQSCVISGESGAGKTETTKF   75 (276)
Q Consensus        45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~   75 (276)
                      ..+..++...+.=-|++.|.+|+|||+..+.
T Consensus         6 ~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~   36 (182)
T d1moza_           6 SMFDKLWGSNKELRILILGLDGAGKTTILYR   36 (182)
T ss_dssp             HHHGGGTTCSSCEEEEEEEETTSSHHHHHHH
T ss_pred             HHHHHHhCCCceEEEEEECCCCCCHHHHHHH
Confidence            3444555666667799999999999996654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.73  E-value=0.42  Score=36.41  Aligned_cols=18  Identities=28%  Similarity=0.385  Sum_probs=15.2

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus         5 i~lvG~~~vGKTsli~r~   22 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRF   22 (168)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            889999999999965543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.67  E-value=0.43  Score=36.55  Aligned_cols=18  Identities=33%  Similarity=0.558  Sum_probs=15.5

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||+....+
T Consensus         7 i~vvG~~~vGKTsLi~~~   24 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRF   24 (175)
T ss_dssp             EEEESSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            899999999999976554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.63  E-value=0.36  Score=36.82  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=16.8

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      +|++.|.+|+|||+....++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            59999999999999766553

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.45  E-value=0.43  Score=39.89  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=19.5

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386         58 SCVISGESGAGKTETTKFILQYLCS   82 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il~yL~~   82 (276)
                      .++|.|-.|||||+.+-.-+.+|..
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll~   50 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLMA   50 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHH
Confidence            4888899999999987665555554

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=81.15  E-value=1  Score=38.89  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             HHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386         43 AEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV   83 (276)
Q Consensus        43 A~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~   83 (276)
                      |.+....+. .+++.-.|=|+|.+|||||+....+++++...
T Consensus        40 ~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          40 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            444444443 35577889999999999999999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.03  E-value=0.44  Score=36.16  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=17.2

Q ss_pred             EEEeCCCCCChhHHHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFILQ   78 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~il~   78 (276)
                      |++.|.+|+|||+....++.
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            77999999999998777753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.00  E-value=0.46  Score=36.42  Aligned_cols=18  Identities=39%  Similarity=0.494  Sum_probs=15.4

Q ss_pred             EEEeCCCCCChhHHHHHH
Q psy17386         59 CVISGESGAGKTETTKFI   76 (276)
Q Consensus        59 IiisGeSGsGKTe~~k~i   76 (276)
                      |++.|.+|+|||...+.+
T Consensus        10 i~vvG~~~vGKTsli~~l   27 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRF   27 (177)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHH
Confidence            899999999999966543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=80.72  E-value=0.8  Score=37.30  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=29.7

Q ss_pred             HHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386         45 AAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLC   81 (276)
Q Consensus        45 ~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~   81 (276)
                      .+++.++.+ .+--||++.|..++|||..+..++++|-
T Consensus        41 ~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            345555543 3668999999999999999999999974

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=80.57  E-value=0.38  Score=37.44  Aligned_cols=20  Identities=20%  Similarity=0.420  Sum_probs=17.6

Q ss_pred             eEEEeCCCCCChhHHHHHHH
Q psy17386         58 SCVISGESGAGKTETTKFIL   77 (276)
Q Consensus        58 sIiisGeSGsGKTe~~k~il   77 (276)
                      .|.+.|.+|||||+....++
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            49999999999999877775

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.51  E-value=0.58  Score=36.31  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             eEEEeCCC-CCChhHHHHHHHHHHHhhcc
Q psy17386         58 SCVISGES-GAGKTETTKFILQYLCSVTS   85 (276)
Q Consensus        58 sIiisGeS-GsGKTe~~k~il~yL~~~~~   85 (276)
                      .+.|+|.. |.|||+.+-.+.+.|+..+.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~   31 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGY   31 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCC
Confidence            48899995 99999999999999998653