Psyllid ID: psy17388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MKEECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRLE
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEccHHHHHHccccHHHHHHHcccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHcccccccccccccccccEEccccccHHHHHHHHccccccccccccHHHHHHHHccccccccccEEEEEEEEccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEccHHHHHccccccHHHHHHcccccccEcccEcccccccccEEEEcccccHHHHHHHHHHHHHHccccccccHHHHHccccEEEcEEEHHHHHHHHccccccccccccHHHHHHHHHHHcccccEcccccEEEEcccccHHHcc
Coil and Loop (DISEMBL)
mkeecnegkeSWLRDFKEGQSNicllfpglsgagktsISFQIESYLIAQgipayaldgdnlrnginanlafseedRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVntpveiceqrdvkgHYKKAREgkiksftgvsqpyeapknpdliletvnvpvEKCANSVLDMIAakgliparqFFFIealprldigviDLQWVQVIAEGwssplkgfmredefLKTIHFNTLDSNVNQSVAIVLAVTgedkqrle
Flexible Loop (DISEMBL)
MKEECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANlafseedrnENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIceqrdvkghykkaregkiksftgvsqpyeapKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAvtgedkqrle
Low Complexity Region (SEG)
MKEECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRLE
Disordered region (IsUnstruct)
***********WLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS******NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR**KIKSFTG*********NPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT********
Disordered Region (DISOPRED)
******************GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE******
Disordered Region (DISEMBL)
**********SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRLE
Disordered Region (DISPRO)
*****************EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q27128	610	Bifunctional 3'-phosphoad	N/A	N/A	0.941	0.419	0.487	1e-73
Q60967	624	Bifunctional 3'-phosphoad	yes	N/A	0.897	0.391	0.505	2e-73
O95340	614	Bifunctional 3'-phosphoad	yes	N/A	0.897	0.397	0.498	4e-73
O43252	624	Bifunctional 3'-phosphoad	no	N/A	0.897	0.391	0.501	6e-73
O88428	621	Bifunctional 3'-phosphoad	no	N/A	0.897	0.392	0.481	3e-72
O54820	624	Bifunctional 3'-phosphoad	no	N/A	0.897	0.391	0.494	3e-71
Q92203	206	Adenylyl-sulfate kinase O	yes	N/A	0.658	0.868	0.470	9e-48
Q02196	202	Adenylyl-sulfate kinase O	yes	N/A	0.650	0.876	0.497	9e-48
Q9HGF8	202	Adenylyl-sulfate kinase O	N/A	N/A	0.650	0.876	0.485	1e-46
Q9C2Y6	202	Adenylyl-sulfate kinase O	N/A	N/A	0.650	0.876	0.485	1e-46

>sp|Q27128|PAPSS_URECA Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase OS=Urechis caupo PE=2 SV=1

 Score =  276 bits (706), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/275 (48%), Positives = 184/275 (66%), Gaps = 19/275 (6%)

Query: 17  KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDR 76
           + G     + F GLSGAGKT+ISF +E YL++QGIP Y+LDGDN+R+G+N NL F++EDR
Sbjct: 32  RGGFRGCTVWFTGLSGAGKTTISFALEEYLVSQGIPTYSLDGDNVRHGLNKNLGFTQEDR 91

Query: 77  NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICE 136
            EN+RR +E AK+FA+ G + L SF+SP    RD AR +H  A L FFE FV+TP+++CE
Sbjct: 92  EENIRRISEVAKLFADGGIVCLTSFISPFKRDRDLARSLHEQAGLPFFECFVDTPLDVCE 151

Query: 137 QRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           QRDVKG YKKAR G+IK FTG+ Q YE+P  P++ L   N  +++C   V+ ++   G++
Sbjct: 152 QRDVKGLYKKARAGQIKGFTGIDQQYESPDAPEIQLYAGNKSIDECVQEVVSLLQKNGVV 211

Query: 197 P------ARQFFFIEA-----------LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDE 239
           P       ++ F  E+           LP ++I  +D QWVQV++EGW++PL GFMRE E
Sbjct: 212 PESAVNIVKELFVPESGLEHAKAEIVDLPTMEITKLDTQWVQVLSEGWATPLTGFMRERE 271

Query: 240 FLKTIHFN-TLDSNV-NQSVAIVLAVTGEDKQRLE 272
           +L++ HF   LD  V NQS+ IVL V   DK RLE
Sbjct: 272 YLQSQHFGCLLDGGVTNQSIPIVLPVHTADKDRLE 306

Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the second step is the transfer of a phosphate group from ATP to APS yielding 3'-phosphoadenylylsulfate (PAPS: activated sulfate donor used by sulfotransferase).
Urechis caupo (taxid: 6431)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q60967|PAPS1_MOUSE Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Mus musculus GN=Papss1 PE=2 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/263 (50%), Positives = 177/263 (67%), Gaps = 19/263 (7%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct: 59  GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct: 119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFI---- 204
            G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + +    
Sbjct: 179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKELY 238

Query: 205 -------------EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT-LD 250
                        EALP L I  +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+  LD
Sbjct: 239 VPENKLHLAKTDAEALPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLD 298

Query: 251 SNV-NQSVAIVLAVTGEDKQRLE 272
             V N SV IVL  T EDK+RL+
Sbjct: 299 GGVINLSVPIVLTATHEDKERLD 321

Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the second step is the transfer of a phosphate group from ATP to APS yielding 3'-phosphoadenylylsulfate (PAPS: activated sulfate donor used by sulfotransferase). In mammals, PAPS is the sole source of sulfate; APS appears to be only an intermediate in the sulfate-activation pathway. Also involved in the biosynthesis of sulfated L-selectin ligands in endothelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O95340|PAPS2_HUMAN Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Homo sapiens GN=PAPSS2 PE=1 SV=2

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/263 (49%), Positives = 179/263 (68%), Gaps = 19/263 (7%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT+ISF +E YL++  IP Y+LDGDN+R+G+N NL FS  DR EN+RR AE AK
Sbjct: 49  GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAK 108

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP A  R+ AR+IH +A L FFE+FV+ P+ ICE RDVKG YK+AR
Sbjct: 109 LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRAR 168

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP------ARQFF 202
            G+IK FTG+   YE P+ P+ +L+T    V  C + V++++  + ++P        + F
Sbjct: 169 AGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNIVPYTIIKDIHELF 228

Query: 203 F-----------IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTL-- 249
                        E LP L I  +DLQWVQV++EGW++PLKGFMRE E+L+ +HF+TL  
Sbjct: 229 VPENKLDHVRAEAETLPSLSITKLDLQWVQVLSEGWATPLKGFMREKEYLQVMHFDTLLD 288

Query: 250 DSNVNQSVAIVLAVTGEDKQRLE 272
           D  +N S+ IVL V+ EDK RLE
Sbjct: 289 DGVINMSIPIVLPVSAEDKTRLE 311

Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the second step is the transfer of a phosphate group from ATP to APS yielding 3'-phosphoadenylylsulfate (PAPS: activated sulfate donor used by sulfotransferase). In mammals, PAPS is the sole source of sulfate; APS appears to be only an intermediate in the sulfate-activation pathway. May have a important role in skeletogenesis during postnatal growth.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O43252|PAPS1_HUMAN Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Homo sapiens GN=PAPSS1 PE=1 SV=2

 Score =  274 bits (700), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 176/263 (66%), Gaps = 19/263 (7%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct: 59  GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct: 119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFI---- 204
            G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + +    
Sbjct: 179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKELY 238

Query: 205 -------------EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT-LD 250
                        E LP L I  +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+  LD
Sbjct: 239 VPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLD 298

Query: 251 SNV-NQSVAIVLAVTGEDKQRLE 272
             V N SV IVL  T EDK+RL+
Sbjct: 299 GGVINLSVPIVLTATHEDKERLD 321

Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the second step is the transfer of a phosphate group from ATP to APS yielding 3'-phosphoadenylylsulfate (PAPS: activated sulfate donor used by sulfotransferase). In mammals, PAPS is the sole source of sulfate; APS appears to be only an intermediate in the sulfate-activation pathway. Also involved in the biosynthesis of sulfated L-selectin ligands in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O88428|PAPS2_MOUSE Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2 OS=Mus musculus GN=Papss2 PE=1 SV=2

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/268 (48%), Positives = 179/268 (66%), Gaps = 24/268 (8%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT+ISF +E YL++  IP Y+LDGDN+R+G+N NL FS  DR EN+RR AE A+
Sbjct: 50  GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNKNLGFSAGDREENIRRIAEVAR 109

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP A  R+ AR+IH +A L FFE+FV+ P+ ICE RDVKG YK+AR
Sbjct: 110 LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRAR 169

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQF-----FF 203
            G+IK FTG+   YE P+ P+ +L+T    V  C   V++++  + ++P          F
Sbjct: 170 AGEIKGFTGIDSDYEKPETPECVLKTNLSSVSDCVQQVVELLQEQNIVPHTTIKGIHELF 229

Query: 204 I------------EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTL-- 249
           +            E LP L I  +DLQWVQ+++EGW++PLKGFMRE E+L+T+HF+TL  
Sbjct: 230 VPENKVDQIRAEAETLPSLPITKLDLQWVQILSEGWATPLKGFMREKEYLQTLHFDTLLD 289

Query: 250 -----DSNVNQSVAIVLAVTGEDKQRLE 272
                D  +N S+ IVL V+ +DK RLE
Sbjct: 290 GVVPRDGVINMSIPIVLPVSADDKARLE 317

Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the second step is the transfer of a phosphate group from ATP to APS yielding 3'-phosphoadenylylsulfate (PAPS: activated sulfate donor used by sulfotransferase). In mammals, PAPS is the sole source of sulfate; APS appears to be only an intermediate in the sulfate-activation pathway. May have a important role in skeletogenesis during postnatal growth.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|O54820|PAPS1_CAVPO Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 OS=Cavia porcellus GN=PAPSS1 PE=2 SV=1

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/263 (49%), Positives = 175/263 (66%), Gaps = 19/263 (7%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT++S  +  +L+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct: 59  GLSGAGKTTVSMALGEHLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct: 119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFI---- 204
            G+IK FTG+   YE P+ P+L+L+T    V  C   V++++  + ++P    + +    
Sbjct: 179 AGEIKGFTGIDSEYEKPEAPELVLKTDACDVNDCVQQVVELLQERDIVPVDASYEVKELY 238

Query: 205 -------------EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT-LD 250
                        E+LP L I  +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+  LD
Sbjct: 239 VPENKLHLAKTDAESLPALQINKVDMQWVQVLAEGWATPLGGFMREREYLQCLHFDCLLD 298

Query: 251 SNV-NQSVAIVLAVTGEDKQRLE 272
             V N SV IVL  T EDK+RL+
Sbjct: 299 GGVINLSVPIVLTATEEDKERLD 321

Bifunctional enzyme with both ATP sulfurylase and APS kinase activity, which mediates two steps in the sulfate activation pathway. The first step is the transfer of a sulfate group to ATP to yield adenosine 5'-phosphosulfate (APS), and the second step is the transfer of a phosphate group from ATP to APS yielding 3'-phosphoadenylylsulfate (PAPS: activated sulfate donor used by sulfotransferase). In mammals, PAPS is the sole source of sulfate; APS appears to be only an intermediate in the sulfate-activation pathway. Also involved in the biosynthesis of sulfated L-selectin ligands in endothelial cells.

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q92203|KAPS_EMENI Adenylyl-sulfate kinase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sD PE=3 SV=2

 Score =  190 bits (483), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 130/185 (70%), Gaps = 6/185 (3%)

Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
           Q  + +   GLS +GK++I+ ++E  L+ +G+ AY LDGDN+R G+N +L FS+ DRNEN
Sbjct: 22  QKGLTIWLTGLSASGKSTIAVELEHQLLQRGLHAYRLDGDNVRFGLNKDLGFSDADRNEN 81

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHR------NANLEFFEVFVNTPVE 133
           +RR AE AK+FA+   IA+ SF+SP  A RD AR++H       +  L F EVFV+ P+E
Sbjct: 82  IRRIAEVAKLFADSSSIAITSFISPFRADRDTARKLHEVPTPNDSTGLPFVEVFVDVPIE 141

Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
           + E+RD KG YKKAREG IK FTG+S PYEAP+NP++ ++ V++P+++    ++D + +K
Sbjct: 142 VAEKRDPKGLYKKAREGIIKEFTGISSPYEAPENPEVHVKNVDLPIQEAVKQIIDYLDSK 201

Query: 194 GLIPA 198
            L+ A
Sbjct: 202 KLLDA 206

Catalyzes the synthesis of activated sulfate.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q02196|KAPS_YEAST Adenylyl-sulfate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MET14 PE=1 SV=1

 Score =  190 bits (483), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 125/177 (70%)

Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
           Q    +   GLS +GK++I+  +E  L+ + + AY LDGDN+R G+N +L FSE+DRNEN
Sbjct: 22  QDGCTIWLTGLSASGKSTIACALEQLLLQKNLSAYRLDGDNIRFGLNKDLGFSEKDRNEN 81

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
           +RR +E +K+FA+   I++ SF+SP    RDRARE+H+ A L+F E+FV+ P+E+ EQRD
Sbjct: 82  IRRISEVSKLFADSCAISITSFISPYRVDRDRARELHKEAGLKFIEIFVDVPLEVAEQRD 141

Query: 140 VKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
            KG YKKAREG IK FTG+S PYEAPK P+L L T    VE+CA  + + + ++ +I
Sbjct: 142 PKGLYKKAREGVIKEFTGISAPYEAPKAPELHLRTDQKTVEECATIIYEYLISEKII 198

Catalyzes the synthesis of activated sulfate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9HGF8|KAPS_SACBA Adenylyl-sulfate kinase OS=Saccharomyces bayanus GN=MET14 PE=3 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 124/177 (70%)

Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
           Q    +   GLS +GK++I+  +E  L+ + + AY LDGDN+R G+N +L FSE+DRNEN
Sbjct: 22  QDGCTVWLTGLSASGKSTIACALEQLLLQKNLSAYRLDGDNIRFGLNKDLGFSEQDRNEN 81

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
           +RR +E +K+FA+   +++ SF+SP    RDRAR++H+ A L+F E+FV+ P+E+ EQRD
Sbjct: 82  IRRISEVSKLFADSCAVSITSFISPYRVDRDRARDLHKEAGLKFIEIFVDVPLEVAEQRD 141

Query: 140 VKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
            KG YKKAREG IK FTG+S PYEAPK P+L L T    VE+CA  + + +  + +I
Sbjct: 142 PKGLYKKAREGVIKEFTGISAPYEAPKAPELHLRTDQKTVEECAAIIYEYLVNEKII 198

Catalyzes the synthesis of activated sulfate.

Saccharomyces bayanus (taxid: 4931)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q9C2Y6|KAPS_SACPS Adenylyl-sulfate kinase OS=Saccharomyces pastorianus GN=MET14 PE=3 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 124/177 (70%)

Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
           Q    +   GLS +GK++I+  +E  L+ + + AY LDGDN+R G+N +L FSE+DRNEN
Sbjct: 22  QDGCTVWLTGLSASGKSTIACALEQLLLQKNLSAYRLDGDNIRFGLNKDLGFSEKDRNEN 81

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
           +RR +E +K+FA+   +++ SF+SP    RDRAR++H+ A L+F E+FV+ P+E+ EQRD
Sbjct: 82  IRRISEVSKLFADSCAVSITSFISPYRVDRDRARDLHKEAGLKFIEIFVDVPLEVAEQRD 141

Query: 140 VKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
            KG YKKAREG IK FTG+S PYEAPK P+L L T    VE+CA  + + +  + +I
Sbjct: 142 PKGLYKKAREGVIKEFTGISAPYEAPKAPELHLRTDQKTVEECAAIIYEYLVNEKII 198

Catalyzes the synthesis of activated sulfate.

Saccharomyces pastorianus (taxid: 27292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
322787112	420	hypothetical protein SINV_15899 [Solenop	0.904	0.585	0.546	3e-80
91094931	627	PREDICTED: similar to AGAP001256-PA [Tri	0.996	0.432	0.494	4e-79
242024762	623	adenylsulfate kinase, putative [Pediculu	0.937	0.409	0.519	7e-79
307188360	574	Bifunctional 3'-phosphoadenosine 5'-phos	0.889	0.421	0.568	9e-79
328701022	668	PREDICTED: bifunctional 3'-phosphoadenos	0.911	0.371	0.518	9e-78
307192124	631	Bifunctional 3'-phosphoadenosine 5'-phos	0.930	0.400	0.52	3e-77
195427547	658	GK16974 [Drosophila willistoni] gi|19415	0.897	0.370	0.518	9e-77
195020256	629	GH14663 [Drosophila grimshawi] gi|193898	0.897	0.387	0.503	1e-76
195128587	629	GI11647 [Drosophila mojavensis] gi|19392	0.897	0.387	0.511	2e-76
332025515	631	Bifunctional 3'-phosphoadenosine 5'-phos	0.889	0.383	0.537	2e-76

>gi|322787112|gb|EFZ13333.1| hypothetical protein SINV_15899 [Solenopsis invicta]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 191/269 (71%), Gaps = 23/269 (8%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
           +   GLSGAGKTSISFQ+E YL++QGIP Y+LDGDN+R G+N NL FS+EDR ENVRR A
Sbjct: 30  IWMTGLSGAGKTSISFQLEEYLVSQGIPTYSLDGDNMRTGLNRNLGFSKEDRKENVRRVA 89

Query: 85  ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
           E A++FA+ G I LCSFVSP AA R  AREIH NANL FFEVF+N  +++CE RDVKG Y
Sbjct: 90  EVARLFADAGIITLCSFVSPFAADRKMAREIHENANLPFFEVFINASLQVCEARDVKGLY 149

Query: 145 KKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPA----RQ 200
           KKAR+G IK FTG+ Q Y+ P  PDL+++T N  +E+  + V++ +  K ++P     +Q
Sbjct: 150 KKARQGIIKGFTGIDQSYDVPTEPDLVVDTENATIEQSTDIVINFLQLKQIVPKACLLKQ 209

Query: 201 FFFIE----------------ALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTI 244
           F F+E                 LP L IG +D+QW+QV+AEGW++PLKGFMRE+E+L+  
Sbjct: 210 FPFLELFVEEDRLDDVRKEMKTLPTLKIGKVDVQWLQVLAEGWAAPLKGFMRENEYLQVQ 269

Query: 245 HFNTLDSN---VNQSVAIVLAVTGEDKQR 270
           HFN L  N   +NQS+ IVLAV+  DK+R
Sbjct: 270 HFNCLYENGVTINQSIPIVLAVSTVDKER 298

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094931|ref|XP_970563.1| PREDICTED: similar to AGAP001256-PA [Tribolium castaneum] gi|270016688|gb|EFA13134.1| hypothetical protein TcasGA2_TC010318 [Tribolium castaneum]

 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 22/293 (7%)

Query: 2   KEECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61
           +   +  K   +     G     + F GLSGAGKTSI+F++E+YLI  GIPAY LDGDN+
Sbjct: 25  RHHVSRAKRGQILGHLRGFRGCTVWFTGLSGAGKTSIAFELEAYLIQHGIPAYGLDGDNM 84

Query: 62  RNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANL 121
           R G+N +L FS++DR EN+RR AE A++FA+ G I LCSFVSP A  R+ AR IHR+ +L
Sbjct: 85  RTGLNKDLGFSKQDREENIRRVAEVARLFADAGQICLCSFVSPFAEDRELARRIHRDNDL 144

Query: 122 EFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEK 181
            FFEVFV+ P+ +CEQRD KG Y KAR+G IK FTG+ QPYE P++PDL+++T+   VE+
Sbjct: 145 PFFEVFVDCPLPVCEQRDTKGLYHKARQGAIKGFTGIDQPYEKPEHPDLVVKTIESSVEE 204

Query: 182 CANSVLDMIAAKGLIP--------ARQFFFIE-----------ALPRLDIGVIDLQWVQV 222
               V++M+   G+IP          + F  +            LP+L++ V+DLQW+QV
Sbjct: 205 SMFHVVEMLQENGIIPLVEEDYEKVLELFVPKDRLAAANEEAATLPKLNLTVLDLQWLQV 264

Query: 223 IAEGWSSPLKGFMREDEFLKTIHFNTL---DSNVNQSVAIVLAVTGEDKQRLE 272
           ++EGW+SPLKGFMRED+FL+T+HFN L     N NQS+ IVL V+  DK+RL+
Sbjct: 265 LSEGWASPLKGFMREDQFLQTLHFNCLLDEVKNTNQSIPIVLPVSSADKERLD 317

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024762|ref|XP_002432795.1| adenylsulfate kinase, putative [Pediculus humanus corporis] gi|212518304|gb|EEB20057.1| adenylsulfate kinase, putative [Pediculus humanus corporis]

 Score =  299 bits (766), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 146/281 (51%), Positives = 193/281 (68%), Gaps = 26/281 (9%)

Query: 13  LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
           LR F+       + F GLSGAGKTSISF++E++L+++GIPAY LDGDN+R G+N NL FS
Sbjct: 41  LRGFR----GCTVWFTGLSGAGKTSISFELEAFLVSRGIPAYGLDGDNIRTGLNKNLGFS 96

Query: 73  EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
           +EDR EN+RR AE AK+FA+ G +ALCSFVSP A  R+ AR IH  + L FFEVF++TP+
Sbjct: 97  KEDRQENIRRVAEVAKLFADSGVVALCSFVSPFAEDREMARSIHAESELPFFEVFIDTPL 156

Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
            +CEQRDVKG YKKAR+G IK FTGV Q YE P  PDLI+ETVN    +    V++++  
Sbjct: 157 HVCEQRDVKGLYKKARKGDIKGFTGVDQAYERPSRPDLIVETVNTTPAESTLQVVELLVR 216

Query: 193 KGLIPA--------RQFFFIE-----------ALPRLDIGVIDLQWVQVIAEGWSSPLKG 233
            G+IP         R+ F  E            L +L+I  +DLQWVQV+AEGW+ PLKG
Sbjct: 217 HGIIPETTKTGGLLRELFVKENVLGNVLSEARTLHKLNINTVDLQWVQVLAEGWAYPLKG 276

Query: 234 FMREDEFLKTIHFNTL---DSNVNQSVAIVLAVTGEDKQRL 271
           FMRED++L+T+HFN++      +NQS+ IVL +   DK ++
Sbjct: 277 FMREDQYLQTLHFNSIVVDGKTINQSIPIVLPIKDGDKDKI 317

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188360|gb|EFN73135.1| Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase [Camponotus floridanus]

 Score =  299 bits (765), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 150/264 (56%), Positives = 190/264 (71%), Gaps = 22/264 (8%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKTSISF++E YL++QGIPAY+LDGDN+R G+N+NL FS+EDR ENVRR AE A+
Sbjct: 3   GLSGAGKTSISFRLEEYLVSQGIPAYSLDGDNIRTGLNSNLGFSKEDREENVRRVAEVAR 62

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+   I LCSFVSP A  R  AREIHRNA+L FFEVFV   +E+CE RDVKG YKKAR
Sbjct: 63  LFADADIITLCSFVSPFAEDRKMAREIHRNADLSFFEVFVEASLEVCESRDVKGLYKKAR 122

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP----ARQFF-- 202
           +G IK FTG+ Q Y+ P  PDLI+ T N  V++  + V+D +  K +IP    ++Q F  
Sbjct: 123 QGIIKGFTGIDQNYDVPITPDLIVNTENATVQQSTDLVIDFLQRKHVIPKLDDSKQPFQE 182

Query: 203 -FIE------------ALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTL 249
            F++             LP L+IG ID+QWVQV+AEGW +PLKGFMRE E+L+T HFN L
Sbjct: 183 LFVKEDRLEDVRKEMRTLPALEIGEIDVQWVQVLAEGWGTPLKGFMREHEYLQTQHFNCL 242

Query: 250 DSN---VNQSVAIVLAVTGEDKQR 270
             N   +NQS+ IVLA++  DK+R
Sbjct: 243 YENGVQINQSIPIVLAISTVDKER 266

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701022|ref|XP_003241462.1| PREDICTED: bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase-like [Acyrthosiphon pisum]

 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 139/268 (51%), Positives = 191/268 (71%), Gaps = 20/268 (7%)

Query: 24  CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83
            + F GLSGAGKTS+SF++E+YL+A+GIPAY LDGDN+R G+N +L FS  DR EN+RR 
Sbjct: 95  TVWFTGLSGAGKTSVSFELEAYLVARGIPAYGLDGDNMRTGLNRDLGFSPADREENIRRV 154

Query: 84  AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
           AE AK+FA+ G + LCSFVSP    R+ AR+IH++A+L FFEVFV+ P+ +CE+RDVKG 
Sbjct: 155 AEVAKLFADSGVVTLCSFVSPFQQDREMARKIHKDADLPFFEVFVDAPLSVCEERDVKGL 214

Query: 144 YKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR---- 199
           YKKAR G+IK FTGV Q YE P +P+L+L+TV++ +E+    V+ M+    +IP +    
Sbjct: 215 YKKARAGQIKGFTGVDQVYEKPDSPELVLKTVHLSIEESTMQVVQMLEENEVIPLQMNRD 274

Query: 200 -----QFFFIE-----------ALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKT 243
                + F  E            LPRLDI  +D QWVQV+AEGW++PL GFM E+E+L+T
Sbjct: 275 IDRVTELFVPENAIEKTKSEALLLPRLDISKMDTQWVQVLAEGWAAPLGGFMNEEEYLQT 334

Query: 244 IHFNTLDSNVNQSVAIVLAVTGEDKQRL 271
           +HFN+   +VNQS+ IVL +T + K++L
Sbjct: 335 LHFNSFSEDVNQSIPIVLPITTDKKEQL 362

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192124|gb|EFN75452.1| Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase [Harpegnathos saltator]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 143/275 (52%), Positives = 189/275 (68%), Gaps = 22/275 (8%)

Query: 18  EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRN 77
           EG     +   GLSGAGKTSISFQ+E YL+++GIPAY+LDGDN+R G+N NL FS+EDR 
Sbjct: 45  EGFRGCTIWMTGLSGAGKTSISFQLEEYLVSRGIPAYSLDGDNIRTGLNCNLGFSKEDRE 104

Query: 78  ENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQ 137
           ENVRR AE A++FA+ G IALCSFVSP AA R+ AR+IH  A+L FFEVF+   +++CE 
Sbjct: 105 ENVRRVAEVARLFADGGVIALCSFVSPFAADREMARQIHEKADLPFFEVFIEASLQVCES 164

Query: 138 RDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
           RD+KG YKKAR+G IK FTG+ Q Y+ P  PDL++ T N  V++    ++D +  K +IP
Sbjct: 165 RDIKGLYKKARQGLIKGFTGIDQNYDVPTEPDLVVNTENTSVQQSTERIIDFLQRKQIIP 224

Query: 198 ARQFFF-------------------IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMRED 238
               F                    I A   L+IG +D+QW+Q++AEGW++PLKGFMRED
Sbjct: 225 EFYGFTRPLEELFVSDDRLADIRREIAACSVLEIGQVDVQWLQILAEGWAAPLKGFMRED 284

Query: 239 EFLKTIHFNTL---DSNVNQSVAIVLAVTGEDKQR 270
           E+L+T+HFN L      +NQS+ IVLAV+  DK+R
Sbjct: 285 EYLQTLHFNCLYKKGVQINQSIPIVLAVSTGDKER 319

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195427547|ref|XP_002061838.1| GK16974 [Drosophila willistoni] gi|194157923|gb|EDW72824.1| GK16974 [Drosophila willistoni]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 140/270 (51%), Positives = 190/270 (70%), Gaps = 26/270 (9%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKTSI+F++E+YL+++GIPAY LDGDN+R G+N NL F+  +R EN+RR  E AK
Sbjct: 82  GLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPAEREENIRRVGEVAK 141

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G +A+CSFVSP A  R+ AR+IH++A L+F+E+FV+TP+ +CE RDVKG YKKAR
Sbjct: 142 LFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYEIFVDTPLNVCETRDVKGLYKKAR 201

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP----------- 197
           EG IK FTG++Q YE P+ P+L++ T    V +    ++ ++  +G+IP           
Sbjct: 202 EGTIKGFTGITQEYERPQQPELVVNTDGYTVRESTQELVTLLEQEGIIPRSLRDVDLLPE 261

Query: 198 -------ARQFFFIEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT 248
                  A Q    EA  LP LDI  ++LQWVQV+AEGW+ PL+GFMREDE+L+T+HFNT
Sbjct: 262 LYPSDAIASQTLRHEAESLPGLDISTVELQWVQVLAEGWAFPLRGFMREDEYLQTLHFNT 321

Query: 249 LDSNV------NQSVAIVLAVTGEDKQRLE 272
           L S +      N SV IVL+ T  DK+RLE
Sbjct: 322 LQSGMDGSYRENHSVPIVLSATTADKERLE 351

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195020256|ref|XP_001985157.1| GH14663 [Drosophila grimshawi] gi|193898639|gb|EDV97505.1| GH14663 [Drosophila grimshawi]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 192/270 (71%), Gaps = 26/270 (9%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKTSI+F++E+YL+++GIPAY LDGDN+R G+N NL F+  DR EN+RR  E AK
Sbjct: 53  GLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADREENIRRVGEVAK 112

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G +++CSFVSP A  R+ AR+IH++A L+F+E+FV+TP+++CE RDVKG YKKAR
Sbjct: 113 LFADSGVVSICSFVSPFADDREMARKIHKDAGLQFYEIFVDTPLDVCETRDVKGLYKKAR 172

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR--------Q 200
           EG IK FTG++Q YE P++P+L++ T    V +   +++ ++  +G+IP          +
Sbjct: 173 EGVIKGFTGITQEYERPQHPELVVSTAGCTVRESTQNLVTLLEQEGIIPRSLRDVDLLPE 232

Query: 201 FFFIEA------------LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT 248
            +  EA            LP L I  ++LQWVQV++EGW+ PL+GFMREDE+L+T+HFNT
Sbjct: 233 LYPSEASEAQALRQEAASLPTLSISTVELQWVQVLSEGWAYPLRGFMREDEYLQTLHFNT 292

Query: 249 LDSNV------NQSVAIVLAVTGEDKQRLE 272
           L S +      N SV IVL+ T  DKQRL+
Sbjct: 293 LQSGLDVSYRENHSVPIVLSATEADKQRLD 322

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195128587|ref|XP_002008744.1| GI11647 [Drosophila mojavensis] gi|193920353|gb|EDW19220.1| GI11647 [Drosophila mojavensis]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/270 (51%), Positives = 191/270 (70%), Gaps = 26/270 (9%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKTSI+F++E+YL+++GIPAY LDGDN+R G+N NL F+  DR EN+RR  E AK
Sbjct: 53  GLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADREENIRRVGEVAK 112

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G +A+CSFVSP A  R+ AR+IH++A L+FFE+FV+TP+ +CE RDVKG YKKAR
Sbjct: 113 LFADSGVVAICSFVSPFADDREMARKIHKDAGLKFFEIFVDTPLSVCETRDVKGLYKKAR 172

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR--------Q 200
           EG IK FTG++Q YE P++P+L++ T +  V +    ++ ++  +G+IP          +
Sbjct: 173 EGVIKGFTGITQEYERPQHPELVVSTHDCTVRESTQQLVALLEHEGIIPRSLRDVDLLPE 232

Query: 201 FFFIEA------------LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT 248
            +  EA            LP L I  ++LQWVQV++EGW+ PL+GFMREDE+L+T+HFNT
Sbjct: 233 LYPSEASEVEELRQEAKSLPALSISTVELQWVQVLSEGWAYPLRGFMREDEYLQTLHFNT 292

Query: 249 LDSNV------NQSVAIVLAVTGEDKQRLE 272
           L S +      N SV IVL+ +  DKQRLE
Sbjct: 293 LQSGLDVSYRENHSVPIVLSASEADKQRLE 322

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025515|gb|EGI65678.1| Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthetase [Acromyrmex echinatior]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/264 (53%), Positives = 187/264 (70%), Gaps = 22/264 (8%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKTSISFQ+E YLI+QGIPAY+LDGDNLR G+N NL FS+EDR ENVRR AE A+
Sbjct: 56  GLSGAGKTSISFQLEEYLISQGIPAYSLDGDNLRTGLNRNLGFSKEDREENVRRVAEVAR 115

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G I LCSFVSP AA R+ AREIH N NL FFE+F++  +++CE RD+KG YKK R
Sbjct: 116 LFADAGIITLCSFVSPFAADREMAREIHENVNLPFFEIFIDASLQVCEARDIKGLYKKVR 175

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI--------PARQ 200
           +G IK FTG+ Q Y+ P  PDL + T N  V++  + V++ + +K +I        P  +
Sbjct: 176 QGIIKGFTGIDQNYDVPIEPDLTVNTENTTVQQSTDIVINFLQSKQIIPKIYELKQPCLE 235

Query: 201 FFF-----------IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTL 249
            F            I+ LP ++IG +D+QW+QV+AEGW++PLKGFMRE+E+L+  HFN L
Sbjct: 236 LFVEGDRLDDIRKEIKTLPIVEIGKLDVQWLQVLAEGWAAPLKGFMRENEYLQVQHFNCL 295

Query: 250 DSN---VNQSVAIVLAVTGEDKQR 270
             N   +NQS+ IVL V+  DK+R
Sbjct: 296 YENGVSINQSIPIVLIVSTSDKER 319

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
FB|FBgn0020389	657	Papss "PAPS synthetase" [Droso	0.665	0.275	0.532	1.4e-72
UNIPROTKB|Q90XY2	613	Q90XY2 "3'-phosphoadenosine 5'	0.639	0.283	0.531	6e-70
MGI|MGI:1330587	624	Papss1 "3'-phosphoadenosine 5'	0.658	0.286	0.513	9.8e-70
UNIPROTKB|O43252	624	PAPSS1 "Bifunctional 3'-phosph	0.658	0.286	0.513	2.6e-69
UNIPROTKB|Q3T0J0	624	PAPSS1 "Uncharacterized protei	0.658	0.286	0.513	2.6e-69
UNIPROTKB|E2QZ13	625	PAPSS1 "Uncharacterized protei	0.658	0.286	0.513	3.3e-69
UNIPROTKB|F1N085	568	PAPSS2 "Uncharacterized protei	0.621	0.297	0.520	4.2e-69
ZFIN|ZDB-GENE-010323-5	614	papss2b "3'-phosphoadenosine 5	0.621	0.275	0.532	8.7e-69
UNIPROTKB|E7ER89	618	PAPSS2 "Sulfate adenylyltransf	0.621	0.273	0.520	8.7e-69
UNIPROTKB|O95340	614	PAPSS2 "Bifunctional 3'-phosph	0.621	0.275	0.520	8.7e-69

FB|FBgn0020389 Papss "PAPS synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 97/182 (53%), Positives = 138/182 (75%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKTSI+F++E+YL+++GIPAY LDGDN+R G+N NL F+  DR EN+RR  E AK
Sbjct:    81 GLSGAGKTSIAFELEAYLVSRGIPAYGLDGDNIRTGLNKNLGFTPADREENIRRVGEVAK 140

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G +A+CSFVSP A  R+ AR+IH++A L+F+E+FV+TP+++CE RDVKG YKKAR
Sbjct:   141 LFADSGVVAICSFVSPFADDREMARKIHKDAGLKFYEIFVDTPLDVCETRDVKGLYKKAR 200

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEALP 208
             EG IK FTG++Q YE P+ P+L++ T    V +    ++ ++  +G+IP R    ++ LP
Sbjct:   201 EGVIKGFTGITQEYERPQMPELVVNTHGYTVRESTQKLVTLLEQEGIIP-RSLRDVDLLP 259

Query:   209 RL 210
              L
Sbjct:   260 EL 261

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS;NAS

GO:0004020 "adenylylsulfate kinase activity" evidence=ISS;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|Q90XY2 Q90XY2 "3'-phosphoadenosine 5'-phosphosulfate synthase 2" [Takifugu rubripes (taxid:31033)]

 Score = 525 (189.9 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
 Identities = 93/175 (53%), Positives = 130/175 (74%)

Query:    24 CLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRR 82
             C ++  GLSGAGKT+ISF +E YL+   IP Y+LDGDN+R+G+N NL FS EDR EN+RR
Sbjct:    42 CTIWLTGLSGAGKTTISFALEEYLVTHAIPCYSLDGDNVRHGLNKNLGFSAEDREENIRR 101

Query:    83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
              AE AK+FA+ G + + SF+SP +  R+ AR+IH +A L FFEVF++ P+E+CE+RDVKG
Sbjct:   102 IAEVAKLFADAGLVCITSFISPFSKDREEARKIHASAGLPFFEVFIHAPLEVCEKRDVKG 161

Query:   143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
              YKKAR G+IK FTG+   YE+P  PDL+L+T  + V++C   VL+++    ++P
Sbjct:   162 LYKKARAGEIKGFTGIDSNYESPDRPDLVLKTGELTVDECLQQVLELLRENDILP 216

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

MGI|MGI:1330587 Papss1 "3'-phosphoadenosine 5'-phosphosulfate synthase 1" [Mus musculus (taxid:10090)]

 Score = 516 (186.7 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
 Identities = 92/179 (51%), Positives = 126/179 (70%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct:    59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct:   119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEAL 207
              G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + ++ L
Sbjct:   179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKEL 237

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IDA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009336 "sulfate adenylyltransferase complex (ATP)" evidence=IC

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0050428 "3'-phosphoadenosine 5'-phosphosulfate biosynthetic process" evidence=IDA

UNIPROTKB|O43252 PAPSS1 "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1" [Homo sapiens (taxid:9606)]

 Score = 516 (186.7 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 92/179 (51%), Positives = 126/179 (70%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct:    59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct:   119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEAL 207
              G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + ++ L
Sbjct:   179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKEL 237

GO:0005524 "ATP binding" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0001501 "skeletal system development" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050427 "3'-phosphoadenosine 5'-phosphosulfate metabolic process" evidence=TAS

GO:0050428 "3'-phosphoadenosine 5'-phosphosulfate biosynthetic process" evidence=TAS

UNIPROTKB|Q3T0J0 PAPSS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 514 (186.0 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
 Identities = 92/179 (51%), Positives = 125/179 (69%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct:    59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP    R+ AR IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct:   119 LFADAGLVCITSFISPYTQDRNNARRIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEAL 207
              G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + ++ L
Sbjct:   179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKEL 237

GO:0005524 "ATP binding" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IEA

UNIPROTKB|E2QZ13 PAPSS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 516 (186.7 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
 Identities = 92/179 (51%), Positives = 126/179 (70%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct:    60 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 119

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct:   120 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 179

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFIEAL 207
              G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + ++ L
Sbjct:   180 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKEL 238

GO:0050428 "3'-phosphoadenosine 5'-phosphosulfate biosynthetic process" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IEA

UNIPROTKB|F1N085 PAPSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 499 (180.7 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 88/169 (52%), Positives = 124/169 (73%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT+ISF +E YL++  IP Y+LDGDN+R G+N NL FS  DR EN+RR AE AK
Sbjct:     2 GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNIRQGLNKNLGFSTWDREENIRRIAEVAK 61

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP A  R+ AR+IH ++ L FFE+FV+ P+ ICE+RDVKG YK+AR
Sbjct:    62 LFADAGLVCITSFISPFAKDRENARKIHESSGLPFFEIFVDAPLNICERRDVKGLYKRAR 121

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
              G+IK FTG+   YE P++P+L+L+T    V  C   V++++  + ++P
Sbjct:   122 AGEIKGFTGIDSDYEKPESPELVLKTNLSSVSDCMQQVVELLQEQNIVP 170

GO:0060348 "bone development" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IEA

ZFIN|ZDB-GENE-010323-5 papss2b "3'-phosphoadenosine 5'-phosphosulfate synthase 2b" [Danio rerio (taxid:7955)]

 Score = 511 (184.9 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 90/169 (53%), Positives = 123/169 (72%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT+I F +E YL++  IP Y+LDGDN+R+G+N NL F+  DR EN+RR AE AK
Sbjct:    48 GLSGAGKTTIGFALEEYLVSHAIPCYSLDGDNIRHGLNKNLGFTSTDREENIRRIAEVAK 107

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP    R  AR+IH +A L FFEVFVN P+E+CE RDVKG YKKAR
Sbjct:   108 LFADAGLVCITSFISPFTKDRKEARKIHESAGLPFFEVFVNAPLEVCESRDVKGLYKKAR 167

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
              G+IK FTG+   YE P+ P+L+L+T  + V  C + V+D++  + ++P
Sbjct:   168 AGEIKGFTGIDSDYEKPEAPELVLKTGELTVNDCIHQVVDLLKEQDIVP 216

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA;ISS

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

UNIPROTKB|E7ER89 PAPSS2 "Sulfate adenylyltransferase" [Homo sapiens (taxid:9606)]

 Score = 497 (180.0 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 88/169 (52%), Positives = 123/169 (72%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT+ISF +E YL++  IP Y+LDGDN+R+G+N NL FS  DR EN+RR AE AK
Sbjct:    53 GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAK 112

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP A  R+ AR+IH +A L FFE+FV+ P+ ICE RDVKG YK+AR
Sbjct:   113 LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRAR 172

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
              G+IK FTG+   YE P+ P+ +L+T    V  C + V++++  + ++P
Sbjct:   173 AGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNIVP 221

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O95340 PAPSS2 "Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2" [Homo sapiens (taxid:9606)]

 Score = 497 (180.0 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
 Identities = 88/169 (52%), Positives = 123/169 (72%)

Query:    29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
             GLSGAGKT+ISF +E YL++  IP Y+LDGDN+R+G+N NL FS  DR EN+RR AE AK
Sbjct:    49 GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAK 108

Query:    89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             +FA+ G + + SF+SP A  R+ AR+IH +A L FFE+FV+ P+ ICE RDVKG YK+AR
Sbjct:   109 LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRAR 168

Query:   149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
              G+IK FTG+   YE P+ P+ +L+T    V  C + V++++  + ++P
Sbjct:   169 AGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNIVP 217

GO:0005524 "ATP binding" evidence=IEA

GO:0004020 "adenylylsulfate kinase activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0060348 "bone development" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IEA

GO:0004781 "sulfate adenylyltransferase (ATP) activity" evidence=ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0001501 "skeletal system development" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050427 "3'-phosphoadenosine 5'-phosphosulfate metabolic process" evidence=TAS

GO:0050428 "3'-phosphoadenosine 5'-phosphosulfate biosynthetic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8H0A6	CYSC_SHEPA	2, ., 7, ., 1, ., 2, 5	0.4216	0.6727	0.8926	yes	N/A
Q64VR1	CYSC_BACFR	2, ., 7, ., 1, ., 2, 5	0.4540	0.6323	0.8514	yes	N/A
Q92203	KAPS_EMENI	2, ., 7, ., 1, ., 2, 5	0.4702	0.6580	0.8689	yes	N/A
A3D819	CYSC_SHEB5	2, ., 7, ., 1, ., 2, 5	0.4285	0.6617	0.8780	yes	N/A
Q4L9E6	CYSC_STAHJ	2, ., 7, ., 1, ., 2, 5	0.4426	0.6654	0.9095	yes	N/A
Q7MPF0	CYSC_VIBVY	2, ., 7, ., 1, ., 2, 5	0.4432	0.6691	0.8792	yes	N/A
Q07Y94	CYSC_SHEFN	2, ., 7, ., 1, ., 2, 5	0.4074	0.6838	0.8985	yes	N/A
B9DLK2	CYSC_STACT	2, ., 7, ., 1, ., 2, 5	0.4371	0.6654	0.9095	yes	N/A
Q9P7G9	KAPS_SCHPO	2, ., 7, ., 1, ., 2, 5	0.4606	0.6544	0.8811	yes	N/A
Q12657	KAPS_PENCH	2, ., 7, ., 1, ., 2, 5	0.4680	0.6654	0.8578	yes	N/A
B8D0S4	CYSC_HALOH	2, ., 7, ., 1, ., 2, 5	0.4745	0.6360	0.9351	yes	N/A
A6WJU6	CYSC_SHEB8	2, ., 7, ., 1, ., 2, 5	0.4270	0.6727	0.8926	yes	N/A
Q5LES5	CYSC_BACFN	2, ., 7, ., 1, ., 2, 5	0.4540	0.6323	0.8514	yes	N/A
Q88X60	CYSC_LACPL	2, ., 7, ., 1, ., 2, 5	0.4857	0.6139	0.8067	yes	N/A
Q97MT8	CYSC_CLOAB	2, ., 7, ., 1, ., 2, 5	0.4293	0.6397	0.87	yes	N/A
Q60967	PAPS1_MOUSE	2, ., 7, ., 1, ., 2, 5	0.5057	0.8970	0.3910	yes	N/A
A5G863	CYSC_GEOUR	2, ., 7, ., 1, ., 2, 5	0.4080	0.6323	0.8269	yes	N/A
Q0HFM7	CYSC_SHESM	2, ., 7, ., 1, ., 2, 5	0.4371	0.6617	0.8780	yes	N/A
Q8CR04	CYSC_STAES	2, ., 7, ., 1, ., 2, 5	0.4252	0.6323	0.8643	yes	N/A
Q49UM5	CYSC_STAS1	2, ., 7, ., 1, ., 2, 5	0.4032	0.6764	0.9019	yes	N/A
A6KXG9	CYSC_BACV8	2, ., 7, ., 1, ., 2, 5	0.4593	0.625	0.8333	yes	N/A
Q9K7H6	CYSC2_BACHD	2, ., 7, ., 1, ., 2, 5	0.4666	0.6544	0.8557	yes	N/A
B0TTD2	CYSC_SHEHH	2, ., 7, ., 1, ., 2, 5	0.4270	0.6727	0.8926	yes	N/A
Q8AAQ1	CYSC_BACTN	2, ., 7, ., 1, ., 2, 5	0.4685	0.6360	0.8606	yes	N/A
Q9KP21	CYSC_VIBCH	2, ., 7, ., 1, ., 2, 5	0.4519	0.6433	0.8139	yes	N/A
Q7VE24	CYSC_PROMA	2, ., 7, ., 1, ., 2, 5	0.4101	0.6470	0.8756	yes	N/A
A0KTI5	CYSC_SHESA	2, ., 7, ., 1, ., 2, 5	0.4413	0.6507	0.8634	yes	N/A
A4WDV5	CYSC_ENT38	2, ., 7, ., 1, ., 2, 5	0.4262	0.6617	0.8955	yes	N/A
Q12QM6	CYSC_SHEDO	2, ., 7, ., 1, ., 2, 5	0.4202	0.6838	0.9073	yes	N/A
Q02196	KAPS_YEAST	2, ., 7, ., 1, ., 2, 5	0.4971	0.6507	0.8762	yes	N/A
A1U3X8	CYSC_MARAV	2, ., 7, ., 1, ., 2, 5	0.4318	0.6360	0.8693	yes	N/A
O06735	CYSC2_BACSU	2, ., 7, ., 1, ., 2, 5	0.4325	0.6470	0.8844	yes	N/A
B9M543	CYSC_GEOSF	2, ., 7, ., 1, ., 2, 5	0.45	0.6544	0.8768	yes	N/A
Q8DE75	CYSC_VIBVU	2, ., 7, ., 1, ., 2, 5	0.4432	0.6691	0.8792	yes	N/A
Q8ZBP3	CYSC_YERPE	2, ., 7, ., 1, ., 2, 5	0.4108	0.6691	0.8544	yes	N/A
A5N960	CYSC_CLOK5	2, ., 7, ., 1, ., 2, 5	0.4585	0.6544	0.8944	yes	N/A
A1S9N4	CYSC_SHEAM	2, ., 7, ., 1, ., 2, 5	0.4378	0.6727	0.9242	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.25	0.824
3rd Layer	2.7.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	272
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	3e-80
pfam01583	157	pfam01583, APS_kinase, Adenylylsulphate kinase	9e-80
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	1e-77
PRK05506	632	PRK05506, PRK05506, bifunctional sulfate adenylylt	4e-74
PRK03846	198	PRK03846, PRK03846, adenylylsulfate kinase; Provis	9e-68
TIGR00455	184	TIGR00455, apsK, adenylylsulfate kinase (apsK)	4e-66
PRK00889	175	PRK00889, PRK00889, adenylylsulfate kinase; Provis	3e-54
PRK05537	568	PRK05537, PRK05537, bifunctional sulfate adenylylt	4e-51
cd00517	353	cd00517, ATPS, ATP-sulfurylase	5e-19
pfam14306	159	pfam14306, PUA_2, PUA-like domain	1e-18
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	2e-17
TIGR00339	383	TIGR00339, sopT, ATP sulphurylase	3e-12
pfam13671	143	pfam13671, AAA_33, AAA domain	1e-05
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	5e-05
PRK04149	391	PRK04149, sat, sulfate adenylyltransferase; Review	6e-05

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score =  238 bits (609), Expect = 3e-80
 Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%)

Query: 24  CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83
            +   GLSG+GK++I+  +E  L  +G P Y LDGDN+R+G+N +L FS EDR EN+RR 
Sbjct: 1   VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRI 60

Query: 84  AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
           AE AK+ A+ G I + +F+SP    R+ AR+I      +F EVFV+TP+E+CEQRD KG 
Sbjct: 61  AEVAKLLADAGLIVIAAFISPYREDREAARKII--GGGDFLEVFVDTPLEVCEQRDPKGL 118

Query: 144 YKKAREGKIKSFTGVSQPYEAPKNPDLILET 174
           YKKAR G+IK FTG+  PYEAP+NPDL+L+T
Sbjct: 119 YKKARAGEIKGFTGIDDPYEAPENPDLVLDT 149

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase

 Score =  237 bits (606), Expect = 9e-80
 Identities = 89/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)

Query: 24  CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83
            + F GLSG+GK++I+  +E  L AQGI  Y LDGDN+R+G+N +L FSEEDR EN+RR 
Sbjct: 4   TIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRI 63

Query: 84  AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
           AE AK+FA+ G I + SF+SP  A RD ARE+H   + +F EVFV+TP+E+CEQRD KG 
Sbjct: 64  AEVAKLFADAGLIVITSFISPYRADRDMARELH--EDGKFIEVFVDTPLEVCEQRDPKGL 121

Query: 144 YKKAREGKIKSFTGVSQPYEAPKNPDLILET 174
           YKKAR G+IK FTG+  PYEAP+NP+L+L+T
Sbjct: 122 YKKARAGEIKGFTGIDSPYEAPENPELVLDT 152

Enzyme that catalyzes the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif. Length = 157

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score =  233 bits (596), Expect = 1e-77
 Identities = 89/184 (48%), Positives = 126/184 (68%), Gaps = 2/184 (1%)

Query: 14  RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
           R+  +GQ    + F GLSG+GK++I+  +E  L A+G   Y LDGDN+R+G+N +L FS 
Sbjct: 15  REALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR 74

Query: 74  EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
           EDR EN+RR AE AK+ A+ G I + +F+SP    R  ARE+      EF EV+V+TP+E
Sbjct: 75  EDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELL--GEGEFIEVYVDTPLE 132

Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
           +CE+RD KG YKKAR G+IK+FTG+  PYEAP+NP+L L+T    VE+C   +LD++  +
Sbjct: 133 VCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKER 192

Query: 194 GLIP 197
            +I 
Sbjct: 193 KIIK 196

Length = 197

>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

 Score =  237 bits (607), Expect = 4e-74
 Identities = 88/178 (49%), Positives = 120/178 (67%), Gaps = 2/178 (1%)

Query: 19  GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE 78
           GQ    + F GLSG+GK++I+  +E  L A G   Y LDGDN+R+G+N +L FS+ DR E
Sbjct: 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVE 516

Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
           N+RR AE A++ A+ G I L SF+SP    R+ AR +H     EF EVFV+TP+E+CE R
Sbjct: 517 NIRRVAEVARLMADAGLIVLVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEAR 574

Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           D KG Y KAR G+IK+FTG+  PYEAP+NP+L L+T     E+ A  VL+++  +G I
Sbjct: 575 DPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDTTGRSPEELAEQVLELLRRRGAI 632

Length = 632

>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional

 Score =  208 bits (531), Expect = 9e-68
 Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 2/185 (1%)

Query: 14  RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
           R+   G   + L F GLSG+GK++++  +E  L   G+  Y LDGDN+R+G+ ++L FS+
Sbjct: 16  REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSD 75

Query: 74  EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
            DR EN+RR  E AK+  + G + L +F+SP  A R   RE  R    EF EVFV+TP+ 
Sbjct: 76  ADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRE--RLGEGEFIEVFVDTPLA 133

Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
           ICE RD KG YKKAR G+I++FTG+   YEAP++P++ L+T    V      +LD +  +
Sbjct: 134 ICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQR 193

Query: 194 GLIPA 198
            +I +
Sbjct: 194 DIIRS 198

Length = 198

>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK)

 Score =  203 bits (519), Expect = 4e-66
 Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 2/177 (1%)

Query: 14  RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
           R    G   + +   GLSG+GK++I+  +E  L ++G   Y LDGDN+R+G+N +L FSE
Sbjct: 10  RQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSE 69

Query: 74  EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
           EDR EN+RR  E AK+F   G I + SF+SP  A R   RE+      EF EVFV+ P+E
Sbjct: 70  EDRKENIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLE 127

Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMI 190
           +CEQRD KG YKKAR G+IK FTG+  PYEAP+NP+++L+T     E+C   +++ +
Sbjct: 128 VCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLDTDQNDREECVGQIIEKL 184

This protein, adenylylsulfate kinase, is often found as a fusion protein with sulfate adenylyltransferase. Important residue (active site in E.coli) is residue 100 of the seed alignment [Central intermediary metabolism, Sulfur metabolism]. Length = 184

>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional

 Score =  172 bits (439), Expect = 3e-54
 Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 4/171 (2%)

Query: 27  FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAEC 86
           F GLSGAGKT+I+  +   L   G P   LDGD +R  ++  L FS+EDR+ N+RR    
Sbjct: 9   FTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFV 68

Query: 87  AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146
           A +    G I L S +SP    R+  R    N    F EVFV+ P+E+CEQRDVKG Y K
Sbjct: 69  ANLLTRHGVIVLVSAISPYRETREEVRANIGN----FLEVFVDAPLEVCEQRDVKGLYAK 124

Query: 147 AREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
           AR G+IK FTG+  PYE P NP++   T    +E+  + VL  +   G + 
Sbjct: 125 ARAGEIKHFTGIDDPYEPPLNPEVECRTDLESLEESVDKVLQKLEELGYLV 175

Length = 175

>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

 Score =  175 bits (446), Expect = 4e-51
 Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 2/175 (1%)

Query: 23  ICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINANLAFSEEDRNENVR 81
             + F GLSGAGK++I+  +   L+   G P   LDGD +R  +++ L FS+EDR+ N+ 
Sbjct: 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNIL 452

Query: 82  RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
           R    A    + G IA+C+ ++P  A R   RE+       F EV V TP+E+CEQRD K
Sbjct: 453 RIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRK 511

Query: 142 GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           G Y KAREGKIK FTG+S PYE P NP+L+++T NV  ++CA+ +L  +  KG +
Sbjct: 512 GLYAKAREGKIKGFTGISDPYEPPANPELVIDTTNVTPDECAHKILLYLEEKGYL 566

Length = 568

>gnl|CDD|173895 cd00517, ATPS, ATP-sulfurylase

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
           LP +++   DL  ++++AEG  SPL GFM E ++L  +    L       + IVL V+ E
Sbjct: 1   LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVLEEMRLLDGTLWPIPIVLDVSEE 60

Query: 267 DKQRLE 272
           D +RL+
Sbjct: 61  DAKRLK 66

ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a homodimer, or a homo-oligomer, depending on the organism. ATPS belongs to a large superfamily of nucleotidyltransferases that includes pantothenate synthetase (PanC), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain. Length = 353

>gnl|CDD|206474 pfam14306, PUA_2, PUA-like domain

 Score = 80.2 bits (199), Expect = 1e-18
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
           E+LP +++   +L  ++++A G  SPL GFM E ++L  +    L   +   + I L V+
Sbjct: 26  ESLPSIELSSRELSDLELLAIGGFSPLTGFMGEADYLSVLEEMRLADGLLWPIPITLDVS 85

Query: 265 GEDKQRLE 272
            ED   L+
Sbjct: 86  EEDADGLK 93

This PUA like domain is found at the N-terminus of ATP-sulfurylase enzymes. Length = 159

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GL+G+GKT+I+  +   L  +      LDGD LR  I  +  + ++ R E   + A+ AK
Sbjct: 14  GLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-ILGHYGYDKQSRIEMALKRAKLAK 72

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
             A+ G I + + +S      D     +R     +FEV++   +E   +RD KG Y KA 
Sbjct: 73  FLADQGMIVIVTTIS----MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKAL 128

Query: 149 EGKIKSFTGVSQPYEAPKNPDLILE 173
           +G+IK+  GV  P++ P   DL+++
Sbjct: 129 KGEIKNVVGVDIPFDEP-KADLVID 152

Length = 176

>gnl|CDD|232928 TIGR00339, sopT, ATP sulphurylase

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
            E+LP + +    L  ++++  G  SPL+GFM E ++   +    L   V  SV I L +
Sbjct: 24  AESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVVEDMRLSDGVLFSVPITLDI 83

Query: 264 TGEDKQRL 271
             ED   +
Sbjct: 84  DDEDADDI 91

This enzyme forms adenosine 5'-phosphosulfate (APS) from ATP and free sulfate, the first step in the formation of the activated sulfate donor 3'-phosphoadenylylsulfate (PAPS). In some cases, it is found in a bifunctional protein in which the other domain, APS kinase, catalyzes the second and final step, the phosphorylation of APS to PAPS; the combined ATP sulfurylase/APS kinase may be called PAPS synthase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus [Central intermediary metabolism, Sulfur metabolism]. Length = 383

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 9/117 (7%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GL G+GK   S      L   G  A  L  D LR  +  +             R  +   
Sbjct: 6   GLPGSGK---STFARRLLRELG--AVVLSSDTLRKRLRGDGPPDISYYARASGRVYQRLL 60

Query: 89  MFAECGFIALCSFV----SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
             A     A    +    + +   R R  ++ R        V++  P E+  +R+ +
Sbjct: 61  ELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNAQ 117

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 29  GLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGIN-----ANLAFSEEDRN---EN 79
           G+SG+GK+++       L  + G P + +DGD+L    N     A +  ++EDR    + 
Sbjct: 6   GVSGSGKSTVG----KALAERLGAP-F-IDGDDLHPPANIAKMAAGIPLNDEDRWPWLQA 59

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
           +  A       A  G +  CS +      RD  R    N  + F  V ++ P E+  +R 
Sbjct: 60  LTDALLAKLASAGEGVVVACSALK--RIYRDILRGGAANPRVRF--VHLDGPREVLAERL 115

Query: 140 --VKGHYKKARE 149
              KGH+  A  
Sbjct: 116 AARKGHFMPADL 127

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|235227 PRK04149, sat, sulfate adenylyltransferase; Reviewed

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
           E+LPR+++       +++IA G  SPL GFM  +++   +    L + +  S+ I L V+
Sbjct: 29  ESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVVEEMRLANGLVWSIPITLDVS 88

Query: 265 GEDKQRLE 272
            ED   L+
Sbjct: 89  EEDAASLK 96

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG4238|consensus	627		100.0
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	100.0
KOG0635|consensus	207		100.0
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	100.0
PRK03846	198	adenylylsulfate kinase; Provisional	99.94
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.94
PF14306	160	PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G	99.94
PRK00889	175	adenylylsulfate kinase; Provisional	99.93
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.92
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.91
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.89
PRK04149	391	sat sulfate adenylyltransferase; Reviewed	99.88
cd00517	353	ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also	99.87
TIGR00339	383	sopT ATP sulphurylase. Members of this family also	99.87
COG2046	397	MET3 ATP sulfurylase (sulfate adenylyltransferase)	99.87
PRK05541	176	adenylylsulfate kinase; Provisional	99.86
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.84
PRK06762	166	hypothetical protein; Provisional	99.83
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.82
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.79
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.78
KOG3354|consensus	191		99.78
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.77
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.74
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.72
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.7
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.7
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.7
PRK13948	182	shikimate kinase; Provisional	99.7
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.69
PRK00131	175	aroK shikimate kinase; Reviewed	99.67
PRK11545	163	gntK gluconate kinase 1; Provisional	99.67
PRK13946	184	shikimate kinase; Provisional	99.65
COG0645	170	Predicted kinase [General function prediction only	99.63
PRK05057	172	aroK shikimate kinase I; Reviewed	99.63
PRK13947	171	shikimate kinase; Provisional	99.62
PRK13949	169	shikimate kinase; Provisional	99.61
PRK09825	176	idnK D-gluconate kinase; Provisional	99.6
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.58
PHA02530	300	pseT polynucleotide kinase; Provisional	99.56
PLN02199	303	shikimate kinase	99.55
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.54
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.54
PRK08233	182	hypothetical protein; Provisional	99.54
PRK00625	173	shikimate kinase; Provisional	99.53
PRK04182	180	cytidylate kinase; Provisional	99.53
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.53
PRK03731	171	aroL shikimate kinase II; Reviewed	99.51
PRK03839	180	putative kinase; Provisional	99.51
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.49
PRK13973	213	thymidylate kinase; Provisional	99.49
PLN02924	220	thymidylate kinase	99.48
PRK00698	205	tmk thymidylate kinase; Validated	99.46
PRK14532	188	adenylate kinase; Provisional	99.45
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.45
PRK14527	191	adenylate kinase; Provisional	99.44
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.44
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.44
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.43
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.43
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.43
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.41
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.4
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.4
PRK13975	196	thymidylate kinase; Provisional	99.39
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.39
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.39
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.38
PRK06217	183	hypothetical protein; Validated	99.38
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.36
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	99.34
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.33
PRK14531	183	adenylate kinase; Provisional	99.33
PRK01184	184	hypothetical protein; Provisional	99.32
KOG3062|consensus	281		99.32
PRK13976	209	thymidylate kinase; Provisional	99.31
PRK07933	213	thymidylate kinase; Validated	99.29
PLN02200	234	adenylate kinase family protein	99.28
PRK14530	215	adenylate kinase; Provisional	99.28
COG4639	168	Predicted kinase [General function prediction only	99.27
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.27
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.25
PRK08356	195	hypothetical protein; Provisional	99.23
PRK00023	225	cmk cytidylate kinase; Provisional	99.21
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.21
PRK13974	212	thymidylate kinase; Provisional	99.21
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.2
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.19
PRK00279	215	adk adenylate kinase; Reviewed	99.18
PRK05480	209	uridine/cytidine kinase; Provisional	99.18
PRK04040	188	adenylate kinase; Provisional	99.17
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.17
PRK12338	319	hypothetical protein; Provisional	99.17
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.15
PRK02496	184	adk adenylate kinase; Provisional	99.14
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.13
PRK06547	172	hypothetical protein; Provisional	99.13
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.11
PRK06696	223	uridine kinase; Validated	99.11
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.11
PRK13808	333	adenylate kinase; Provisional	99.1
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.1
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.1
KOG3347|consensus	176		99.1
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.09
PRK14737	186	gmk guanylate kinase; Provisional	99.08
PRK14528	186	adenylate kinase; Provisional	99.08
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.06
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.06
PRK08118	167	topology modulation protein; Reviewed	99.06
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.06
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.05
PRK06761	282	hypothetical protein; Provisional	99.05
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.04
PRK07667	193	uridine kinase; Provisional	99.03
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.03
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.02
PRK00300	205	gmk guanylate kinase; Provisional	99.02
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.01
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.01
PRK14738	206	gmk guanylate kinase; Provisional	98.99
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.98
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.98
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.97
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.97
PRK07261	171	topology modulation protein; Provisional	98.96
COG3709	192	Uncharacterized component of phosphonate metabolis	98.96
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.94
PTZ00451	244	dephospho-CoA kinase; Provisional	98.94
PLN02422	232	dephospho-CoA kinase	98.93
PTZ00301	210	uridine kinase; Provisional	98.93
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.91
PLN02674	244	adenylate kinase	98.91
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.91
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.89
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.89
PTZ00088	229	adenylate kinase 1; Provisional	98.87
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.87
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.87
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.87
COG1660	286	Predicted P-loop-containing kinase [General functi	98.84
PRK14526	211	adenylate kinase; Provisional	98.84
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.82
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.82
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.79
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.79
KOG3079|consensus	195		98.78
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.78
PRK14529	223	adenylate kinase; Provisional	98.77
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.76
KOG3220|consensus	225		98.73
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.73
PRK15453	290	phosphoribulokinase; Provisional	98.71
PLN02348	395	phosphoribulokinase	98.71
PLN02459	261	probable adenylate kinase	98.69
KOG0636|consensus	466		98.68
PLN02842	505	nucleotide kinase	98.68
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.67
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.66
PLN02165	334	adenylate isopentenyltransferase	98.64
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.62
PRK05439	311	pantothenate kinase; Provisional	98.61
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.61
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.58
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.58
PLN02772	398	guanylate kinase	98.53
PRK07429	327	phosphoribulokinase; Provisional	98.53
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.53
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.52
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.52
PHA03132	580	thymidine kinase; Provisional	98.48
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.48
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.38
PHA00729	226	NTP-binding motif containing protein	98.33
PLN02318	656	phosphoribulokinase/uridine kinase	98.31
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.29
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.24
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.22
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.21
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.2
KOG4622|consensus	291		98.15
KOG3327|consensus	208		98.13
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.12
PLN02748	468	tRNA dimethylallyltransferase	98.09
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.08
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.07
PRK10867	433	signal recognition particle protein; Provisional	98.06
PF00004	132	AAA: ATPase family associated with various cellula	98.04
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	98.02
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.02
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.0
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.0
PRK08084	235	DNA replication initiation factor; Provisional	97.99
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.98
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.98
PLN02840	421	tRNA dimethylallyltransferase	97.96
KOG1384|consensus	348		97.95
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.95
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.95
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.95
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.93
KOG3877|consensus	393		97.93
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.92
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	97.92
smart00382	148	AAA ATPases associated with a variety of cellular	97.92
TIGR00959	428	ffh signal recognition particle protein. This mode	97.92
PRK14974	336	cell division protein FtsY; Provisional	97.91
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.9
PRK10416	318	signal recognition particle-docking protein FtsY;	97.88
PRK04296	190	thymidine kinase; Provisional	97.88
PRK13768	253	GTPase; Provisional	97.87
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.86
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.82
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.81
CHL00181	287	cbbX CbbX; Provisional	97.81
KOG3308|consensus	225		97.8
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.79
PRK09169	2316	hypothetical protein; Validated	97.77
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.74
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.72
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.72
KOG2134|consensus	422		97.72
PRK08727	233	hypothetical protein; Validated	97.72
cd02034	116	CooC The accessory protein CooC, which contains a	97.71
PLN02796	347	D-glycerate 3-kinase	97.69
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.68
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.68
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.68
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.67
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.66
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.66
PLN03046	460	D-glycerate 3-kinase; Provisional	97.66
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.64
PF13173	128	AAA_14: AAA domain	97.64
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.61
KOG0744|consensus	423		97.61
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.6
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.59
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.59
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.59
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.59
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.58
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.58
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	97.57
PRK08116	268	hypothetical protein; Validated	97.56
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.56
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	97.56
PRK05642	234	DNA replication initiation factor; Validated	97.55
COG4240	300	Predicted kinase [General function prediction only	97.54
KOG1532|consensus	366		97.54
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.54
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.54
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.53
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.53
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.52
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.52
PRK12377	248	putative replication protein; Provisional	97.51
PRK12402	337	replication factor C small subunit 2; Reviewed	97.51
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.5
KOG0733|consensus	802		97.49
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.49
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.49
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.47
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.47
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.47
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.47
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.46
cd03116	159	MobB Molybdenum is an essential trace element in t	97.46
PF13245	76	AAA_19: Part of AAA domain	97.46
cd03114	148	ArgK-like The function of this protein family is u	97.46
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.45
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.44
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.44
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.44
PRK05973	237	replicative DNA helicase; Provisional	97.44
PRK04195	482	replication factor C large subunit; Provisional	97.43
PRK04328	249	hypothetical protein; Provisional	97.43
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.41
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.41
PLN03025	319	replication factor C subunit; Provisional	97.41
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.41
PRK09183	259	transposase/IS protein; Provisional	97.4
KOG0780|consensus	483		97.39
PRK06893	229	DNA replication initiation factor; Validated	97.39
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.38
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.37
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	97.37
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.37
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.36
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	97.35
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.35
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.35
PRK09087	226	hypothetical protein; Validated	97.35
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.35
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.35
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.33
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.33
PRK08181	269	transposase; Validated	97.33
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.32
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.32
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.31
PHA02544	316	44 clamp loader, small subunit; Provisional	97.31
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.31
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.3
PRK06526	254	transposase; Provisional	97.3
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.29
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.29
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.29
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.29
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.29
CHL00195	489	ycf46 Ycf46; Provisional	97.29
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.29
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.28
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.28
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.28
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.28
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.28
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.28
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.28
PRK06835	329	DNA replication protein DnaC; Validated	97.27
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.27
PTZ00202	550	tuzin; Provisional	97.26
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.24
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.24
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.24
PF05729	166	NACHT: NACHT domain	97.23
KOG1533|consensus	290		97.23
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	97.23
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.23
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.23
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.21
PRK06921	266	hypothetical protein; Provisional	97.21
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.2
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.2
TIGR00665	434	DnaB replicative DNA helicase. This model describe	97.19
PRK15455	644	PrkA family serine protein kinase; Provisional	97.19
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.18
KOG2004|consensus	906		97.17
KOG0738|consensus	491		97.17
PRK06067	234	flagellar accessory protein FlaH; Validated	97.17
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.17
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.17
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.16
PRK13342	413	recombination factor protein RarA; Reviewed	97.16
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.16
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.15
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.15
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.15
PRK13886	241	conjugal transfer protein TraL; Provisional	97.14
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.14
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.14
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.13
PRK06620	214	hypothetical protein; Validated	97.12
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	97.12
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.11
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.11
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	97.11
KOG4235|consensus	244		97.11
KOG3078|consensus	235		97.1
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.09
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.09
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.08
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.08
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.08
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.08
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.08
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.08
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.08
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.08
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.07
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.07
PRK13695	174	putative NTPase; Provisional	97.06
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.05
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.05
PRK12422	445	chromosomal replication initiation protein; Provis	97.05
COG1855	604	ATPase (PilT family) [General function prediction	97.05
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	97.05
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.05
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.04
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.04
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.04
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.04
PRK07952	244	DNA replication protein DnaC; Validated	97.03
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.03
PRK10646	153	ADP-binding protein; Provisional	97.03
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.03
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.02
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.02
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.01
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.01
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	97.0
cd02117	212	NifH_like This family contains the NifH (iron prot	97.0
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	96.99
PF07726	131	AAA_3: ATPase family associated with various cellu	96.98
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	96.98
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.98
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	96.98
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.97
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.97
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	96.96
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.96
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.96
cd02032	267	Bchl_like This family of proteins contains bchL an	96.95
cd01128	249	rho_factor Transcription termination factor rho is	96.95
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.95
PRK08939	306	primosomal protein DnaI; Reviewed	96.94
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.94
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.94
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.94
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.94
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.94
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.93
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.92
PHA02244	383	ATPase-like protein	96.91
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.91
COG3911	183	Predicted ATPase [General function prediction only	96.9
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.9
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.9
cd02036	179	MinD Bacterial cell division requires the formatio	96.89
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.89
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	96.89
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.88
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.87
PRK11823	446	DNA repair protein RadA; Provisional	96.87
PRK06851	367	hypothetical protein; Provisional	96.86
PRK09354	349	recA recombinase A; Provisional	96.85
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.85
KOG0730|consensus	693		96.85
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.84
PRK14086	617	dnaA chromosomal replication initiation protein; P	96.83
PF02224	157	Cytidylate_kin: Cytidylate kinase; InterPro: IPR01	96.83
PRK05595	444	replicative DNA helicase; Provisional	96.83
TIGR01287	275	nifH nitrogenase iron protein. This model describe	96.82
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.82
PRK05748	448	replicative DNA helicase; Provisional	96.81
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	96.8
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.8
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.8
cd02040	270	NifH NifH gene encodes component II (iron protein)	96.8
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.78
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	96.78
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	96.78
CHL00176	638	ftsH cell division protein; Validated	96.77
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.77
PRK06851	367	hypothetical protein; Provisional	96.76
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.75
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.75
COG0802	149	Predicted ATPase or kinase [General function predi	96.75
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.73
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.73
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.73
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.73
PRK13764	602	ATPase; Provisional	96.73
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.72
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.72
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.71
PRK05636	505	replicative DNA helicase; Provisional	96.71
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.7
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	96.7
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.7
PRK12608	380	transcription termination factor Rho; Provisional	96.7
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.7
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.69
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.69
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.69
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.68
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.68
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.67
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.67
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.67
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.67
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.66
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.66
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.66
PRK08760	476	replicative DNA helicase; Provisional	96.65
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.65
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.65
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.64
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	96.64
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.64
PRK13341	725	recombination factor protein RarA/unknown domain f	96.64
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	96.64
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.63
PRK09165	497	replicative DNA helicase; Provisional	96.63
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.63
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.63
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.63
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.62
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.62
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.62
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.62
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	96.62
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.62
COG1123	539	ATPase components of various ABC-type transport sy	96.61
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.61
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	96.61
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.6
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	96.6
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.6
PRK08506	472	replicative DNA helicase; Provisional	96.6

>KOG4238|consensus

Probab=100.00  E-value=5e-52  Score=362.68  Aligned_cols=255  Identities=53%  Similarity=0.969  Sum_probs=245.7

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      .+.++..||++|++|+||||++-+|.+.|...|++++.+|+|++|.++.++++|++++|++.+++++++++.+.++|.++
T Consensus        46 ~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvc  125 (627)
T KOG4238|consen   46 GGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVC  125 (627)
T ss_pred             CCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCcee
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV  177 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~  177 (272)
                      |.++++|+..+|...+++...++++|+.||++++.++|.+|..+.+|+++|.+++.+|+++++.||+|+.|+++++++..
T Consensus       126 itsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe~~e~vl~t~~~  205 (627)
T KOG4238|consen  126 ITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPETPERVLKTNLS  205 (627)
T ss_pred             eehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCCChhHHhhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCCCch------hhh-----------hccCCceecCchhHHHHHHHhhccccCccCCCCHHHH
Q psy17388        178 PVEKCANSVLDMIAAKGLIPARQ------FFF-----------IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEF  240 (272)
Q Consensus       178 ~~ee~~~~I~~~L~~~~~~~~~~------l~~-----------~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~  240 (272)
                      ++.+|++++++.|++++++|.+.      |||           +.+||.+.|++.+++|+++||+||.+||+|||++.+|
T Consensus       206 ~v~~cvqqvve~lq~~~ivp~~~~~~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrerey  285 (627)
T KOG4238|consen  206 TVSDCVQQVVELLQEQNIVPYTIIKDVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREY  285 (627)
T ss_pred             hHHHHHHHHHHHHHhcCCChhhhhHHHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHH
Confidence            99999999999999999999776      454           7889999999999999999999999999999999999


Q ss_pred             HhhhhhcccCCC-------CccceeEEEecChhhhhhcC
Q psy17388        241 LKTIHFNTLDSN-------VNQSVAIVLAVTGEDKQRLE  272 (272)
Q Consensus       241 ~~v~~~~~l~~~-------~~~~~pi~l~~~~~~~~~~~  272 (272)
                      .+|+|+-.|.||       ...||||||+++.|++.+||
T Consensus       286 lq~mhf~~lld~khaf~g~in~sipivl~~s~e~k~~le  324 (627)
T KOG4238|consen  286 LQVMHFDTLLDGKHAFDGVINMSIPIVLPVSAEDKTRLE  324 (627)
T ss_pred             HHHhhhhhhhcccccccccccccccEEEecchhhhhccc
Confidence            999999999987       78999999999999999886

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.8e-41  Score=267.50  Aligned_cols=188  Identities=48%  Similarity=0.853  Sum_probs=178.5

Q ss_pred             hcccchhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHH
Q psy17388          6 NEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAE   85 (272)
Q Consensus         6 ~~~~~~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~   85 (272)
                      ++|+++  |..+.+++|.+|||+|+|||||||+|.+|+++|...|++++++|+|++|.++..+++|+.++|.++++++++
T Consensus         9 ~v~~~~--r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvae   86 (197)
T COG0529           9 SVTKQE--REALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAE   86 (197)
T ss_pred             ccCHHH--HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHH
Confidence            455555  588888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388         86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP  165 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~  165 (272)
                      +++.+.++|.+||+++++|++..|+..|+++...  .|+.||++||.++|.+|..|++|++++.+++++|++++..||+|
T Consensus        87 vAkll~daG~iviva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P  164 (197)
T COG0529          87 VAKLLADAGLIVIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAP  164 (197)
T ss_pred             HHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCC
Confidence            9999999999999999999999999999988653  79999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCC
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAKGLIP  197 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~  197 (272)
                      .+|++++||+..++++++++|+..|..++++.
T Consensus       165 ~~Pel~l~t~~~~vee~v~~i~~~l~~~~~~~  196 (197)
T COG0529         165 ENPELHLDTDRNSVEECVEQILDLLKERKIIK  196 (197)
T ss_pred             CCCeeEeccccCCHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999988764

>KOG0635|consensus

Probab=100.00  E-value=2.7e-35  Score=229.39  Aligned_cols=190  Identities=42%  Similarity=0.735  Sum_probs=177.6

Q ss_pred             hhhcccchhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHH
Q psy17388          4 ECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA   83 (272)
Q Consensus         4 ~~~~~~~~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i   83 (272)
                      ++++|++++  ..+.++++.+|||+|++||||||+|-+|.+.|..+|.-.+.+|+|++|.+++.+++|..++|.+.++++
T Consensus        15 ~~~v~k~eR--q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRi   92 (207)
T KOG0635|consen   15 ESSVTKEER--QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRI   92 (207)
T ss_pred             cCCccHHHH--HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHH
Confidence            678888885  566779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC
Q psy17388         84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE  163 (272)
Q Consensus        84 ~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye  163 (272)
                      .++++.++++|.+.|++.++|++.+|+..|.++++.  +|+.||+++|.+++.+|..+++|+.+|.+.+++|++++.+||
T Consensus        93 geVaKLFADag~iciaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIddPYE  170 (207)
T KOG0635|consen   93 GEVAKLFADAGVICIASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDDPYE  170 (207)
T ss_pred             HHHHHHHhccceeeeehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCCccc
Confidence            999999999999999999999999999999998864  899999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEeCCC-CCHHHHHHHHHHHHHhCCCCC
Q psy17388        164 APKNPDLILETVN-VPVEKCANSVLDMIAAKGLIP  197 (272)
Q Consensus       164 ~~~~~~~~Idt~~-~~~ee~~~~I~~~L~~~~~~~  197 (272)
                      .|-++++++-+.. .+++++++.|+.+|..+|++.
T Consensus       171 aP~~cEi~l~~~~~~sp~~mae~iv~YL~~kg~l~  205 (207)
T KOG0635|consen  171 APLNCEIVLKSHESSSPEEMAEIIVSYLDNKGYLQ  205 (207)
T ss_pred             CCCCcEEEEccCCCCCHHHHHHHHHHHHhhcChhc
Confidence            9999999987654 457779999999999999874

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=2.1e-33  Score=225.12  Aligned_cols=155  Identities=51%  Similarity=0.899  Sum_probs=134.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCS  100 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d  100 (272)
                      +|.+|||+|.|||||||+|++|.++|...|++++++|+|.++..+..+++|+.++|.++++++.++++.+.++|.+||++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva   80 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA   80 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV  177 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~  177 (272)
                      .++|+...|+.+++.+...  +|+.|||+||.++|.+|..|++|.+++.++++++.+++..||+|.+|+++|||+..
T Consensus        81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~ye~P~~pdl~idt~~~  155 (156)
T PF01583_consen   81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDPYEEPLNPDLVIDTDKE  155 (156)
T ss_dssp             ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETTTS
T ss_pred             eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccCCCCCCCCeEEEeCCCC
Confidence            9999999999999998754  78999999999999999999999999999999999999999999999999999864

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.94  E-value=1.2e-25  Score=189.03  Aligned_cols=181  Identities=43%  Similarity=0.786  Sum_probs=153.7

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      |+.+.+++|.+|+|+|.+||||||+++.|+..+...|.+++++|+|.++..+....++..+++..+++++...+..+...
T Consensus        16 ~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~   95 (198)
T PRK03846         16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDA   95 (198)
T ss_pred             HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhC
Confidence            56778889999999999999999999999999987788899999999987666566777778888888888888888899


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE  173 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id  173 (272)
                      |.+||+++.++...+|+.+++++...  .+++|||+||.+++.+|..++++.+.+.+++..+...+..|++|..++++||
T Consensus        96 G~~VI~~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y~~p~~ad~~Id  173 (198)
T PRK03846         96 GLVVLTAFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEIHLD  173 (198)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccCCCCCCCCEEEE
Confidence            99999998888889999999988765  4667999999999999966445554544555666667777998888899999


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC
Q psy17388        174 TVNVPVEKCANSVLDMIAAKGLI  196 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~~~~~  196 (272)
                      |+..++++++++|++.|...+++
T Consensus       174 t~~~~~~~vv~~Il~~l~~~~~~  196 (198)
T PRK03846        174 TGEQLVTNLVEQLLDYLRQRDII  196 (198)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999987754

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.94  E-value=6.1e-25  Score=182.66  Aligned_cols=175  Identities=47%  Similarity=0.866  Sum_probs=152.4

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      |+++..++|.+|+|+|+|||||||+++.|+..+...|+++.++++|.++..+..+.+|...++..+++.+..++..++.+
T Consensus        10 ~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (184)
T TIGR00455        10 RQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRN   89 (184)
T ss_pred             HHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            55667788999999999999999999999999987777888999999998877777888888888888888888889999


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE  173 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id  173 (272)
                      |.+||++++++...+|+.++.++...  ++++|||+||.+++.+|..++++...+.+++..+.+.+..|+.|..++++||
T Consensus        90 G~~VI~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Id  167 (184)
T TIGR00455        90 GIIVITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD  167 (184)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEE
Confidence            99999999999999999998887654  7889999999999999976666666666677777777888998888999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy17388        174 TVNVPVEKCANSVLDMI  190 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L  190 (272)
                      |+..++++++++|++.|
T Consensus       168 t~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       168 TDQNDREECVGQIIEKL  184 (184)
T ss_pred             CCCCCHHHHHHHHHHhC
Confidence            99999999999998754

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A

Probab=99.94  E-value=2.9e-27  Score=190.45  Aligned_cols=68  Identities=31%  Similarity=0.495  Sum_probs=57.0

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +..+|+|.|+.+++||+++|++|+||||+|||+++||+||+++|||+||++|||||||+|+++.++.|
T Consensus        26 a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~~~~rL~~G~~wpiPI~L~v~~e~~~~l   93 (160)
T PF14306_consen   26 AESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVLETMRLPDGTLWPIPIVLDVSEEEAKSL   93 (160)
T ss_dssp             HTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHHHHSBETTSSB--S---EEECHHHHTTC
T ss_pred             HhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHHhhCCcCCCCEEeEEEEEECCHHHHHhc
Confidence            67899999999999999999999999999999999999999999999999999999999999998875

...

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.93  E-value=8.8e-24  Score=174.25  Aligned_cols=173  Identities=42%  Similarity=0.712  Sum_probs=141.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ++|.+|+|+|+|||||||+|+.|+..+...|.++.++|+|.+++.+..+.++..+++..+++.+..++..+...|.+|++
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~   81 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV   81 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            67889999999999999999999999987787889999999988776666777778888888887777777788999999


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCCH
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPV  179 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~~  179 (272)
                      +.++++...++.++...    ..+.+|||+||.+++.+|..+.++.+.+.+++..+...+..|..|..++++|++++.++
T Consensus        82 ~~~~~~~~~~~~l~~~~----~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~~~~~  157 (175)
T PRK00889         82 SAISPYRETREEVRANI----GNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTDLESL  157 (175)
T ss_pred             ecCCCCHHHHHHHHhhc----CCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECCCCCH
Confidence            88887767777666553    25788999999999999975545555555556555555666666667889999999999


Q ss_pred             HHHHHHHHHHHHhCCCC
Q psy17388        180 EKCANSVLDMIAAKGLI  196 (272)
Q Consensus       180 ee~~~~I~~~L~~~~~~  196 (272)
                      ++++++|++.|...+++
T Consensus       158 ~~~~~~i~~~l~~~~~~  174 (175)
T PRK00889        158 EESVDKVLQKLEELGYL  174 (175)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999887764

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.92  E-value=1.1e-23  Score=201.56  Aligned_cols=176  Identities=44%  Similarity=0.757  Sum_probs=154.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ++|.+|+|+|+|||||||+|++|+++|.. .|.++.++|+|.++..+..+..|+..++..+++++...+..+++.|.+||
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI  469 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAI  469 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            56889999999999999999999999975 56678999999999888878889999998888888888888889999999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP  178 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~  178 (272)
                      ++.++++...|+.++++++..| .+++|||++|.+++.+|+.++++.+.+.+.++.+...+..|+.|..++++|||+..+
T Consensus       470 ~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~~~s  548 (568)
T PRK05537        470 CAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDTTNVT  548 (568)
T ss_pred             EEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEECCCCC
Confidence            9999999999999999998766 577899999999999998766665555556666666777888887889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q psy17388        179 VEKCANSVLDMIAAKGLI  196 (272)
Q Consensus       179 ~ee~~~~I~~~L~~~~~~  196 (272)
                      +++++++|++.|.+.|++
T Consensus       549 ~~eiv~~Il~~L~~~g~~  566 (568)
T PRK05537        549 PDECAHKILLYLEEKGYL  566 (568)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999998865

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.91  E-value=5.9e-23  Score=200.18  Aligned_cols=181  Identities=49%  Similarity=0.846  Sum_probs=158.0

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      |....+++|.+|+++|+|||||||+|++|+++|...|.++.++|+|.++..+..+.+|+.+++..+++++..++..++++
T Consensus       452 ~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~  531 (632)
T PRK05506        452 RAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADA  531 (632)
T ss_pred             HHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            33455667999999999999999999999999987788899999999999887777899999999999998889999999


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE  173 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id  173 (272)
                      |.+||+|++++++..|+.+++++...  ++++|||++|.+++.+|..++++...+.+++..+...+.+|++|..++++||
T Consensus       532 G~~Vivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id  609 (632)
T PRK05506        532 GLIVLVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLD  609 (632)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEe
Confidence            99999999999889999888877543  6788999999999999986667766666677777778888998888899999


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC
Q psy17388        174 TVNVPVEKCANSVLDMIAAKGLI  196 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~~~~~  196 (272)
                      ++..++++++++|++.|...+++
T Consensus       610 ~~~~s~~e~v~~Ii~~l~~~~~~  632 (632)
T PRK05506        610 TTGRSPEELAEQVLELLRRRGAI  632 (632)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCC
Confidence            98899999999999999886653

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.89  E-value=3e-22  Score=161.02  Aligned_cols=149  Identities=54%  Similarity=0.971  Sum_probs=131.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS  103 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~  103 (272)
                      +|+|+|.|||||||+|+.|++.+...|+++.+++.|.++..+....+++.+.+.+.++.+...++.+.++|.+||+|..+
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            48999999999999999999999777878889999999887766667777777777887777788888899999999998


Q ss_pred             CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeC
Q psy17388        104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILET  174 (272)
Q Consensus       104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt  174 (272)
                      .+...|..++.+++  +.++..||+++|.+++.+|..+..|.+.+.+++.+..++...|+.|..+++++|+
T Consensus        81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (149)
T cd02027          81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDPYEAPENPDLVLDT  149 (149)
T ss_pred             CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCCCCCCCCCeeEecC
Confidence            88888988888775  6789999999999999999999999999999999998999999988888998875

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK04149 sat sulfate adenylyltransferase; Reviewed

Probab=99.88  E-value=4.4e-23  Score=187.77  Aligned_cols=68  Identities=31%  Similarity=0.453  Sum_probs=65.7

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +.+||++.|++++++||++|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus        28 a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~~~~rL~~G~~wpiPi~L~v~~e~~~~l   95 (391)
T PRK04149         28 AESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVVEEMRLANGLVWSIPITLDVSEEDAASL   95 (391)
T ss_pred             hccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhC
Confidence            67799999999999999999999999999999999999999999999999999999999999988876

>cd00517 ATPS ATP-sulfurylase

Probab=99.87  E-value=1e-22  Score=183.54  Aligned_cols=65  Identities=37%  Similarity=0.542  Sum_probs=63.1

Q ss_pred             CCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      ||++.|++++++||++|++|+||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus         1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~~~~rL~~G~~wpiPi~L~v~~e~~~~l   65 (353)
T cd00517           1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVLEEMRLLDGTLWPIPIVLDVSEEDAKRL   65 (353)
T ss_pred             CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHHHhCcCCCCCCcCeEEEEeCCHHHHhhc
Confidence            69999999999999999999999999999999999999999999999999999999999988765

ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be

>TIGR00339 sopT ATP sulphurylase

Probab=99.87  E-value=1.1e-22  Score=185.25  Aligned_cols=68  Identities=29%  Similarity=0.449  Sum_probs=65.7

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +.+||++.|+.+++|||++|++|+||||+|||+++||+||+++|||+||++|||||||+|+++.++.|
T Consensus        24 a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~~~~rL~~G~~wpiPi~L~v~~e~~~~l   91 (383)
T TIGR00339        24 AESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVVEDMRLSDGVLFSVPITLDIDDEDADDI   91 (383)
T ss_pred             hccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhC
Confidence            67799999999999999999999999999999999999999999999999999999999999988865

Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.

>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]

Probab=99.87  E-value=9.5e-23  Score=179.55  Aligned_cols=71  Identities=28%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             hhhhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        201 FFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      .-.+..+|+|+|+.+.++|+++|++|+||||+|||+++||+|||++|||+||++|||||+|||+++.+..+
T Consensus        22 ~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv~~mRL~~G~~w~iPItl~v~e~~a~~~   92 (397)
T COG2046          22 MKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVVESMRLANGTLWPIPITLDVSEEEAEEL   92 (397)
T ss_pred             HHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHHHhccccCCCeeeeeeEecCchHhhhcc
Confidence            33477899999999999999999999999999999999999999999999999999999999999887765

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.86  E-value=3.5e-20  Score=152.89  Aligned_cols=168  Identities=27%  Similarity=0.457  Sum_probs=121.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ++|.+|+|+|+|||||||+|+.|++.|...+..++++|+|.+++.+. ..++....+.+...+...+...+...|.+||+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~   83 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVIV   83 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            57889999999999999999999999976667788999999877543 23455444444444444555556678889999


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCC-CC
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN-VP  178 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~-~~  178 (272)
                      ++++++...+...+...    .++++|||+||++++.+|+.++.+.......+..+...+..+..+ .++++|+|++ .+
T Consensus        84 ~~~~~~~~~~~~~~~~~----~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~-~Ad~vI~~~~~~~  158 (176)
T PRK05541         84 TTISMFDEIYAYNRKHL----PNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEP-KADLVIDNSCRTS  158 (176)
T ss_pred             EeCCcHHHHHHHHHhhc----CCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCC-CCCEEEeCCCCCC
Confidence            98876544555554443    346789999999999999976655444334444443334344433 3689999986 59


Q ss_pred             HHHHHHHHHHHHHhC
Q psy17388        179 VEKCANSVLDMIAAK  193 (272)
Q Consensus       179 ~ee~~~~I~~~L~~~  193 (272)
                      +++++++|.+.+.++
T Consensus       159 ~~~~v~~i~~~l~~~  173 (176)
T PRK05541        159 LDEKVDLILNKLKLR  173 (176)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998765

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.84  E-value=1.6e-21  Score=186.78  Aligned_cols=68  Identities=25%  Similarity=0.336  Sum_probs=65.9

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +.+||++.|++++++||++|++||||||+|||+++||+||+++|||+||++|||||||+|+++.++.|
T Consensus        26 a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~~~~~l~~G~~wpiPi~L~v~~~~~~~l   93 (568)
T PRK05537         26 ALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVLENMRLADGTLWPIPITLDVSEKFAAGL   93 (568)
T ss_pred             hccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhC
Confidence            67899999999999999999999999999999999999999999999999999999999999988876

>PRK06762 hypothetical protein; Provisional

Probab=99.83  E-value=1.7e-19  Score=147.35  Aligned_cols=160  Identities=13%  Similarity=0.069  Sum_probs=114.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCS  100 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d  100 (272)
                      .|.+|+|+|+|||||||+|+.|++.+   +.++.+++.|.++..+........   ......+...++..++.|..||++
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~g~~vild   74 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRRDMLRVKDGPG---NLSIDLIEQLVRYGLGHCEFVILE   74 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHHHHhccccCCCC---CcCHHHHHHHHHHHHhCCCEEEEc
Confidence            36899999999999999999999998   456888999999875543211100   011223334455567788889888


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccC---CCCCCCcEEEeCCCC
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNV  177 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~  177 (272)
                      .......+++.++.+.+..+.++..|||++|.+++.+|+.+|...     +...-..++..|   +.+..++.+++|++.
T Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  149 (166)
T PRK06762         75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS-----HEFGEDDMRRWWNPHDTLGVIGETIFTDNL  149 (166)
T ss_pred             hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc-----ccCCHHHHHHHHhhcCCcCCCCeEEecCCC
Confidence            876655677778888888888999999999999999999766321     101111233333   333446789999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy17388        178 PVEKCANSVLDMIA  191 (272)
Q Consensus       178 ~~ee~~~~I~~~L~  191 (272)
                      ++++++++|+..+.
T Consensus       150 ~~~~v~~~i~~~~~  163 (166)
T PRK06762        150 SLKDIFDAILTDIG  163 (166)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998875

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.82  E-value=3.8e-19  Score=146.68  Aligned_cols=158  Identities=21%  Similarity=0.225  Sum_probs=108.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-------cCCCCH-------HHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-------NLAFSE-------EDRNENVRRAAEC   86 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-------~~~~~~-------~~~~~~~~~i~~~   86 (272)
                      ++++|+|+|+|||||||+|++|++.+   +..+++++.|.++..+..       ...+..       ......+..+...
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~   77 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVL---AEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA   77 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh---CCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence            35799999999999999999999998   334566788877654321       011111       1112334445566


Q ss_pred             HHHHHhCCCeEEEcCCCC-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc-cccCCC
Q psy17388         87 AKMFAECGFIALCSFVSP-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-SQPYEA  164 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~-~~~ye~  164 (272)
                      +..++++|.+||+|.... ....++.++.+   .+.+++.||++||.+++.+|+.+|.      .....+... ...+..
T Consensus        78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~~~l~~R~~~R~------~~~~~~~~~~~~~~~~  148 (175)
T cd00227          78 VAAMARAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPGEVAEGRETARG------DRVPGQARKQARVVHA  148 (175)
T ss_pred             HHHHHhCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhcC------CccchHHHHHHHHhcC
Confidence            777889999999997665 44555655544   3567899999999999999996552      112222111 122334


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        165 PKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       165 ~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      |..++++|||+..+++|++++|++.|
T Consensus       149 ~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         149 GVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             CCcceEEEECCCCCHHHHHHHHHHhc
Confidence            55678999999999999999999876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.79  E-value=2.6e-18  Score=140.83  Aligned_cols=157  Identities=20%  Similarity=0.207  Sum_probs=101.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----cCCCC--------HHHHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFS--------EEDRNENVRRAAECAK   88 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----~~~~~--------~~~~~~~~~~i~~~~~   88 (272)
                      +.+|+|+|+|.|||||+|++|.+.+   ..++.++..|.+...+..     ..++.        .......+..+...++
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~---~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia   77 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERL---PEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIA   77 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHS---SS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhC---cCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998   457889999988775432     11221        1233445555667788


Q ss_pred             HHHhCCCeEEEcCCCCcHH-HHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---C
Q psy17388         89 MFAECGFIALCSFVSPTAA-ARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---A  164 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~~~-~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~  164 (272)
                      .+.++|..||+|.+..... ..+.+++++.  |.+++.|-+.||.+++.+|...      |..+..++..  .+|+   .
T Consensus        78 a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~------RgDR~~G~a~--~q~~~Vh~  147 (174)
T PF07931_consen   78 AMARAGNNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERA------RGDRPIGLAA--WQAEHVHE  147 (174)
T ss_dssp             HHHHTT-EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHH------HTSSSTTHHH--HHTTGGGT
T ss_pred             HHHhCCCCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHh------cCCcchHHHH--HHHhhccc
Confidence            8999999999886543334 3566666665  6688999999999999999743      3333333211  1222   2


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        165 PKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       165 ~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ....|+.|||+..+++||+++|+++++
T Consensus       148 ~~~YDleVDTs~~sp~ecA~~I~~~~~  174 (174)
T PF07931_consen  148 GGRYDLEVDTSATSPEECAREILARLE  174 (174)
T ss_dssp             T---SEEEETTSS-HHHHHHHHHTT--
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHhC
Confidence            345789999999999999999998764

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.9e-18  Score=135.00  Aligned_cols=150  Identities=21%  Similarity=0.345  Sum_probs=117.8

Q ss_pred             EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCC
Q psy17388         28 PGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFV  102 (272)
Q Consensus        28 ~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~  102 (272)
                      .|.+||||||++.+|+++|     ++.|+|+|.+...     +..+.+.++++|..|++++...+....+.+..+|+.+.
T Consensus         1 MGVsG~GKStvg~~lA~~l-----g~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERL-----GAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHc-----CCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence            4899999999999999999     6889999998763     44578899999999999999888777777664554444


Q ss_pred             CCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCC-CCc-EEEeCCCC
Q psy17388        103 SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APK-NPD-LILETVNV  177 (272)
Q Consensus       103 ~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~-~~~-~~Idt~~~  177 (272)
                      .-.+.||+.+|.-..    .+.+|||+.+.+++.+|+      ..|.+++.....++++|+   .|. +++ +.||. +.
T Consensus        76 ALKr~YRD~LR~~~~----~~~Fv~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi-~~  144 (161)
T COG3265          76 ALKRSYRDLLREANP----GLRFVYLDGDFDLILERM------KARKGHFMPASLLDSQFATLEEPGADEDVLTIDI-DQ  144 (161)
T ss_pred             HHHHHHHHHHhccCC----CeEEEEecCCHHHHHHHH------HhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeC-CC
Confidence            445678888776543    356699999999999999      577788777777888876   343 234 56676 46


Q ss_pred             CHHHHHHHHHHHHHhC
Q psy17388        178 PVEKCANSVLDMIAAK  193 (272)
Q Consensus       178 ~~ee~~~~I~~~L~~~  193 (272)
                      ++++++++++..++..
T Consensus       145 ~~e~vv~~~~~~l~~~  160 (161)
T COG3265         145 PPEEVVAQALAWLKEG  160 (161)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999998753

>KOG3354|consensus

Probab=99.78  E-value=4.2e-18  Score=133.83  Aligned_cols=160  Identities=18%  Similarity=0.302  Sum_probs=122.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECGFI   96 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~   96 (272)
                      +-+|++.|.+||||||++++|++.|     .+.|+|+|++...     +..+.+.++++|..|+..+...++.-+.+|..
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l-----~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~   86 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEEL-----GLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQG   86 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHh-----CCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCe
Confidence            3489999999999999999999999     5778999998653     34567889999999999998766555557777


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHh------CCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCC
Q psy17388         97 ALCSFVSPTAAARDRAREIHRN------ANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKN  167 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~------~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~  167 (272)
                      ||..+.+-.+.+|+.++.-.+.      ....+.+|+|.++.+++.+|+.      .|.+++...+.+.++|.   .|..
T Consensus        87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~------~R~gHFMp~~lleSQf~~LE~p~~  160 (191)
T KOG3354|consen   87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLK------KRKGHFMPADLLESQFATLEAPDA  160 (191)
T ss_pred             EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHh------hcccccCCHHHHHHHHHhccCCCC
Confidence            7766555566788888774431      1235678999999999999994      56667766666777775   3432


Q ss_pred             C--c-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        168 P--D-LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       168 ~--~-~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +  + +.|+..+.+++++++.|.+.+..
T Consensus       161 ~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  161 DEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             CccceEEEeeccCCHHHHHHHHHHHHHh
Confidence            2  2 67777778999999999987753

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.77  E-value=1.5e-17  Score=144.64  Aligned_cols=161  Identities=16%  Similarity=0.306  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHH-HHHHHHHHHHhCCCeEEEcCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVR-RAAECAKMFAECGFIALCSFV  102 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~g~~VI~d~~  102 (272)
                      +|+|+|+|||||||+|++|++.+...|+++.+++.|.++..+..   +.. ......+ .....++..++.|..||+|..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~   76 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT   76 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence            58999999999999999999999877888999999988764421   111 1111122 223455666778888999998


Q ss_pred             CCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC------CCCcEEEeCCC
Q psy17388        103 SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP------KNPDLILETVN  176 (272)
Q Consensus       103 ~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~------~~~~~~Idt~~  176 (272)
                      +.+...|..+.++++..+.++.+||+++|.+++.+|+.+|..    .-....+..+...|+.|      ..++++||++.
T Consensus        77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~----~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~  152 (249)
T TIGR03574        77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE----KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTK  152 (249)
T ss_pred             chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC----CCCHHHHHHHHHhhCCCCCCCCccCceEEecCCC
Confidence            877778888888888888999999999999999999865421    00001122344455543      35789999864


Q ss_pred             -CCHHHHHHHHHHHHHh
Q psy17388        177 -VPVEKCANSVLDMIAA  192 (272)
Q Consensus       177 -~~~ee~~~~I~~~L~~  192 (272)
                       .+.+++++.|.+.+..
T Consensus       153 ~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       153 KIDYNEILEEILEISEN  169 (249)
T ss_pred             CCCHHHHHHHHHHHhhc
Confidence             5789999999988754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.74  E-value=9.7e-18  Score=135.85  Aligned_cols=157  Identities=18%  Similarity=0.280  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCCCHHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAFSEEDRNENVRRA-AECAKMFAECGFIAL   98 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI   98 (272)
                      +.|+|+|+|||||||++++||+.|     +..++|.|.+.+...   ....|. ...+..++.+ .++++.+...+..||
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L-----~~~F~D~D~~Ie~~~g~sI~eIF~-~~GE~~FR~~E~~vl~~l~~~~~~Vi   76 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKAL-----NLPFIDTDQEIEKRTGMSIAEIFE-EEGEEGFRRLETEVLKELLEEDNAVI   76 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHc-----CCCcccchHHHHHHHCcCHHHHHH-HHhHHHHHHHHHHHHHHHhhcCCeEE
Confidence            569999999999999999999999     677899998765322   112233 2334445544 556777777777888


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-----cccc-ccccccCCCCCCCcEEE
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-----IKSF-TGVSQPYEAPKNPDLIL  172 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-----~~~~-~~~~~~ye~~~~~~~~I  172 (272)
                      +++...  ...+..+..+++.|   .+|||++|.+++.+|+............     +..+ ..-...|+.  .+++++
T Consensus        77 aTGGG~--v~~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e--~a~~~~  149 (172)
T COG0703          77 ATGGGA--VLSEENRNLLKKRG---IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE--VADFII  149 (172)
T ss_pred             ECCCcc--ccCHHHHHHHHhCC---eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH--hCcEEe
Confidence            776654  34455566667666   7899999999999999632110000000     1111 111122332  467899


Q ss_pred             eCCCCCHHHHHHHHHHHHHhC
Q psy17388        173 ETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L~~~  193 (272)
                      +++..+ ++++++|++.|...
T Consensus       150 ~~~~~~-~~v~~~i~~~l~~~  169 (172)
T COG0703         150 DTDDRS-EEVVEEILEALEGS  169 (172)
T ss_pred             cCCCCc-HHHHHHHHHHHHHh
Confidence            887766 89999999998764

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.72  E-value=1.2e-16  Score=130.07  Aligned_cols=151  Identities=17%  Similarity=0.291  Sum_probs=100.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      |+|+|++||||||+|+.|++.+     +..++|.|.+...     ...+.++...+...++..+.+.+..++..|..+|+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi   75 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII   75 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            5789999999999999999998     5778999997532     11233455555667777777666666666665555


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccccc---CCCCC--C-CcEEEe
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQP---YEAPK--N-PDLILE  173 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~---ye~~~--~-~~~~Id  173 (272)
                      +.......+++.+    ..++.++..|||++|.+++.+|+..|.      ++......+..+   ++.|.  . ..++||
T Consensus        76 ~~t~~~~~~r~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~------~~~~~~~~i~~~~~~~~~~~~~e~~~~~id  145 (163)
T TIGR01313        76 TCSALKRHYRDIL----REAEPNLHFIYLSGDKDVILERMKARK------GHFMKADMLESQFAALEEPLADETDVLRVD  145 (163)
T ss_pred             EecccHHHHHHHH----HhcCCCEEEEEEeCCHHHHHHHHHhcc------CCCCCHHHHHHHHHHhCCCCCCCCceEEEE
Confidence            5554444455444    356778888999999999999996552      111111122222   23331  2 236777


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy17388        174 TVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~  191 (272)
                      ++ .+++++.+++.++|-
T Consensus       146 ~~-~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       146 ID-QPLEGVEEDCIAVVL  162 (163)
T ss_pred             CC-CCHHHHHHHHHHHHh
Confidence            75 589999999988774

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.70  E-value=5e-16  Score=127.91  Aligned_cols=161  Identities=15%  Similarity=0.267  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCCCCHHH-HHHHHHHHHHHHHHHHhCCCeEEEc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLAFSEED-RNENVRRAAECAKMFAECGFIALCS  100 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~g~~VI~d  100 (272)
                      ++|+++|+|||||||+|+.|++.|...++.+.++..|..+--+.. ..+...+. ++.........+...++ ...||+|
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvD   80 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVD   80 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEe
Confidence            589999999999999999999999988888888887654432211 11211111 11111111111111122 5689999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--cccccccCCCC------CCCcEEE
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--FTGVSQPYEAP------KNPDLIL  172 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--~~~~~~~ye~~------~~~~~~I  172 (272)
                      .++.+...|..+...++....++.+||+.||+++|.+|+.      .+...++.  +..+-..|++|      ..|-++|
T Consensus        81 dtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~------ergepip~Evl~qly~RfEePn~~~rWDspll~i  154 (261)
T COG4088          81 DTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR------ERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLVI  154 (261)
T ss_pred             cccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc------cCCCCCCHHHHHHHHHhhcCCCCCccccCceEEE
Confidence            9999999999999999999999999999999999999983      33333332  33455667765      4677889


Q ss_pred             eCCCCCHHHHHHHHHHHHH
Q psy17388        173 ETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L~  191 (272)
                      |++ ....+.++-|...+.
T Consensus       155 d~~-d~~t~~IDfiesvl~  172 (261)
T COG4088         155 DDS-DVSTEVIDFIESVLR  172 (261)
T ss_pred             ecc-cccccchhHHHHHHH
Confidence            863 344445555555444

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.70  E-value=4.4e-17  Score=129.34  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc----CCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN----LAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~----~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      +|+|+|+|||||||+|+.|++.+     +..+++.|.++..+...    ..+.........+.+...+...++.|..+|+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv   75 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV   75 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence            68999999999999999999998     58889999988765432    1233333334444555677778889999999


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      |..+.....|+.+.++++..|.++.+|++++|.+++.+|+..|
T Consensus        76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (143)
T PF13671_consen   76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR  118 (143)
T ss_dssp             ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred             ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence            9888878899999999999999999999999999999999765

...

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.70  E-value=1.7e-16  Score=127.33  Aligned_cols=112  Identities=22%  Similarity=0.261  Sum_probs=83.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeE
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFA-ECGFIA   97 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~V   97 (272)
                      +|+|+|+|||||||+|+.|++.+     +..++|.|.++..     +..+.++....+..+...+...+...+ ..|..|
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v   75 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV   75 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            58999999999999999999998     6778999999874     222333443445566666654443333 467777


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      |++..+....+++.+++++  .+.++.+||++||.+++.+|+..|
T Consensus        76 Vid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R  118 (150)
T cd02021          76 VVACSALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERLAAR  118 (150)
T ss_pred             EEEeccccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhc
Confidence            7777766677788877776  567889999999999999999655

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK13948 shikimate kinase; Provisional

Probab=99.70  E-value=9.2e-17  Score=133.02  Aligned_cols=160  Identities=13%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c--CCCCHHHHHHHHHHH-HHHHHHHHhCCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N--LAFSEEDRNENVRRA-AECAKMFAECGF   95 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~--~~~~~~~~~~~~~~i-~~~~~~~~~~g~   95 (272)
                      .++..|+|+|+|||||||+++.|++.|     +..++|.|.+.+.... .  ..|. ...+..++++ .++++.+...+.
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~l-----g~~~iD~D~~ie~~~g~si~~if~-~~Ge~~fR~~E~~~l~~l~~~~~   81 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRAL-----MLHFIDTDRYIERVTGKSIPEIFR-HLGEAYFRRCEAEVVRRLTRLDY   81 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEECCHHHHHHHhCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999     4556799976654321 1  1111 1223344443 345556665566


Q ss_pred             eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC----CCCCcEE
Q psy17388         96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA----PKNPDLI  171 (272)
Q Consensus        96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~----~~~~~~~  171 (272)
                      .||..+...  ..+...++.+.+.|   .+|||++|++++.+|+..+.  +...........+.+.|+.    +..++++
T Consensus        82 ~VIa~GgG~--v~~~~n~~~l~~~g---~vV~L~~~~e~l~~Rl~~~~--RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~  154 (182)
T PRK13948         82 AVISLGGGT--FMHEENRRKLLSRG---PVVVLWASPETIYERTRPGD--RPLLQVEDPLGRIRTLLNEREPVYRQATIH  154 (182)
T ss_pred             eEEECCCcE--EcCHHHHHHHHcCC---eEEEEECCHHHHHHHhcCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCCEE
Confidence            676543322  11122233344444   67999999999999994321  0000000001111211211    1247899


Q ss_pred             EeCCCCCHHHHHHHHHHHHHh
Q psy17388        172 LETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      |+|++.++++++++|.+.|..
T Consensus       155 i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        155 VSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             EECCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999876

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.69  E-value=1e-15  Score=134.18  Aligned_cols=157  Identities=19%  Similarity=0.332  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHH-HHHHHHHHHHhCCCeEEEcC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVR-RAAECAKMFAECGFIALCSF  101 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~g~~VI~d~  101 (272)
                      .+|+|+|.|||||||+|+.|++.+...+..+.+++.|.+.  +..+. |.....+...+ .+.......+....+||+|.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd   78 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERALSKDTIVILDD   78 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhhccCeEEEEeC
Confidence            4899999999999999999999999888899999977665  22222 43322222222 23333344556678999999


Q ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc--ccccccccCCCC------CCCcEEEe
Q psy17388        102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK--SFTGVSQPYEAP------KNPDLILE  173 (272)
Q Consensus       102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~--~~~~~~~~ye~~------~~~~~~Id  173 (272)
                      .+.++.+|..+.++++..+.++.+||++||.++|.+|+.+|...    ..+.  -+..+..+||.|      +.|-++|+
T Consensus        79 ~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~----~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~  154 (270)
T PF08433_consen   79 NNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP----ERYPEETIDDMIQRFEEPDPKNRWDSPLFTID  154 (270)
T ss_dssp             ---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S------S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred             CchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC----CCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence            99999999999999999999999999999999999999655211    0111  244466778865      34678888


Q ss_pred             CC--CCCHHHHHHHH
Q psy17388        174 TV--NVPVEKCANSV  186 (272)
Q Consensus       174 t~--~~~~ee~~~~I  186 (272)
                      ++  ..+.+++.+.|
T Consensus       155 ~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  155 SSDEELPLEEIWNAL  169 (270)
T ss_dssp             -TTS---HHHHHHHH
T ss_pred             cCCCCCCHHHHHHHH
Confidence            42  22334444444

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.67  E-value=3e-16  Score=128.44  Aligned_cols=162  Identities=18%  Similarity=0.198  Sum_probs=93.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cC--CCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NL--AFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      ++.+|+|+|+|||||||+|++|++.+     ++.++|.|.+...... +.  .+.......+.+....+...+......|
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~v   77 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLV   77 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCE
Confidence            56799999999999999999999999     5667888876543221 10  0111111122222234444444433345


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC----C-CCCcEEE
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA----P-KNPDLIL  172 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~----~-~~~~~~I  172 (272)
                      |..+...  ......+..++..   .+.|||++|.+++.+|+.++....... .......+...|..    + ..++++|
T Consensus        78 i~~g~~~--~~~~~~r~~l~~~---~~~v~l~~~~~~~~~R~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~dl~i  151 (175)
T PRK00131         78 ISTGGGA--VLREENRALLRER---GTVVYLDASFEELLRRLRRDRNRPLLQ-TNDPKEKLRDLYEERDPLYEEVADITV  151 (175)
T ss_pred             EEeCCCE--eecHHHHHHHHhC---CEEEEEECCHHHHHHHhcCCCCCCcCC-CCChHHHHHHHHHHHHHHHHhhcCeEE
Confidence            5433221  1122333444333   377999999999999996542100000 00000011111111    1 2378999


Q ss_pred             eCCCCCHHHHHHHHHHHHHhC
Q psy17388        173 ETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ||++.+++++++.|.+++...
T Consensus       152 dt~~~~~~e~~~~I~~~v~~~  172 (175)
T PRK00131        152 ETDGRSPEEVVNEILEKLEAA  172 (175)
T ss_pred             eCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999753

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.67  E-value=3.9e-15  Score=121.43  Aligned_cols=148  Identities=19%  Similarity=0.305  Sum_probs=97.8

Q ss_pred             EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-----cccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEcC
Q psy17388         28 PGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-----GINANLAFSEEDRNENVRRAAECAKMFA-ECGFIALCSF  101 (272)
Q Consensus        28 ~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-----~l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~VI~d~  101 (272)
                      .|+|||||||+++.|+..+     +..++|+|.+..     ....+.++...++..+...+.+.+..+. ..|..||+ .
T Consensus         1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~   74 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C   74 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence            4999999999999999999     567899997532     1222456666666677777766665444 34544443 3


Q ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc---cccCCCCCC--Cc-EEEeCC
Q psy17388        102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV---SQPYEAPKN--PD-LILETV  175 (272)
Q Consensus       102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~---~~~ye~~~~--~~-~~Idt~  175 (272)
                      .+....+|    +.+...+.+|..|||+||.+++.+|+..|.      ++......+   ...+++|..  .+ ++||++
T Consensus        75 s~~~~~~r----~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~------~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~  144 (163)
T PRK11545         75 SALKKHYR----DLLREGNPNLSFIYLKGDFDVIESRLKARK------GHFFKTQMLVTQFETLQEPGADETDVLVVDID  144 (163)
T ss_pred             ecchHHHH----HHHHccCCCEEEEEEECCHHHHHHHHHhcc------CCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCC
Confidence            33333444    444556789999999999999999996552      222222112   223555532  23 566765


Q ss_pred             CCCHHHHHHHHHHHHHh
Q psy17388        176 NVPVEKCANSVLDMIAA  192 (272)
Q Consensus       176 ~~~~ee~~~~I~~~L~~  192 (272)
                       .+++++++.++..+.+
T Consensus       145 -~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        145 -QPLEGVVASTIEVIKK  160 (163)
T ss_pred             -CCHHHHHHHHHHHHHH
Confidence             5899999999999865

>PRK13946 shikimate kinase; Provisional

Probab=99.65  E-value=6.1e-16  Score=128.63  Aligned_cols=162  Identities=15%  Similarity=0.220  Sum_probs=97.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhCCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAECGF   95 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~g~   95 (272)
                      ..++.|+|+|+|||||||+|+.|+++|     ++.++|.|.+.+.... .+..   ......+++.+ .++...+.+.+.
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~L-----g~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~   81 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATML-----GLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGP   81 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence            355789999999999999999999999     4567899875443321 1110   11122333333 345555666666


Q ss_pred             eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-cc-ccccccccccCCC-CCCCcEEE
Q psy17388         96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-GK-IKSFTGVSQPYEA-PKNPDLIL  172 (272)
Q Consensus        96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-~~-~~~~~~~~~~ye~-~~~~~~~I  172 (272)
                      .||+++...+  .....+..+...+   +.|||++|++++.+|+.+|.....-. .. ...+..+...+.+ +..++++|
T Consensus        82 ~Vi~~ggg~~--~~~~~r~~l~~~~---~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i  156 (184)
T PRK13946         82 LVLATGGGAF--MNEETRAAIAEKG---ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTV  156 (184)
T ss_pred             eEEECCCCCc--CCHHHHHHHHcCC---EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEE
Confidence            7776644321  1122233333333   67999999999999996542110000 00 0111111111111 22468999


Q ss_pred             eCCCCCHHHHHHHHHHHHHh
Q psy17388        173 ETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L~~  192 (272)
                      ++++.+++++++.|.+.+..
T Consensus       157 ~~~~~~~~~~~~~i~~~i~~  176 (184)
T PRK13946        157 ASRDVPKEVMADEVIEALAA  176 (184)
T ss_pred             ECCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999876

>COG0645 Predicted kinase [General function prediction only]

Probab=99.63  E-value=5e-15  Score=118.89  Aligned_cols=116  Identities=19%  Similarity=0.257  Sum_probs=103.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--------cCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--------NLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      +.++++.|.||+||||+|+.|++.+     +...+.+|.+++.|..        .-.|+.......|..+...+..+++.
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999     7889999999998875        22366666677888888899999999


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      |..||.|..+.....|+.++.+++..|++|..|++.++.+++..|+..|
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR  124 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR  124 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence            9999999999888999999999999999999999999999999999533

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.63  E-value=4.2e-15  Score=122.30  Aligned_cols=158  Identities=18%  Similarity=0.232  Sum_probs=93.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCC--CCHHHHHHHHHH-HHHHHHHHHhCCCeE
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLA--FSEEDRNENVRR-AAECAKMFAECGFIA   97 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~--~~~~~~~~~~~~-i~~~~~~~~~~g~~V   97 (272)
                      ...|+|.|++||||||+++.|++.+     +..++|.|........ +..  |... ....++. -.++...+...+..|
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~~i~~~~g~~i~~~~~~~-g~~~fr~~e~~~l~~l~~~~~~v   77 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQEIEKRTGADIGWVFDVE-GEEGFRDREEKVINELTEKQGIV   77 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCchHHHHhCcCHhHHHHHh-CHHHHHHHHHHHHHHHHhCCCEE
Confidence            4579999999999999999999998     4566788765432221 111  1111 1112222 233444455555566


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh-hccc-cccccc----cccCCCCCCCcEE
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR-EGKI-KSFTGV----SQPYEAPKNPDLI  171 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r-~~~~-~~~~~~----~~~ye~~~~~~~~  171 (272)
                      +..+...  ......+.+++..|   .+|||++|.+++.+|+..+..+..- .... ..+..+    ...|+  ..++++
T Consensus        78 i~~ggg~--v~~~~~~~~l~~~~---~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~--~~Ad~~  150 (172)
T PRK05057         78 LATGGGS--VKSRETRNRLSARG---VVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYE--EIADVT  150 (172)
T ss_pred             EEcCCch--hCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--hhCCEE
Confidence            6544332  11222334455555   7899999999999999643111000 0000 001111    11232  247899


Q ss_pred             EeCCCCCHHHHHHHHHHHHHh
Q psy17388        172 LETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      |||++.+++++++.|++.+.+
T Consensus       151 idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        151 IRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             EECCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998865

>PRK13947 shikimate kinase; Provisional

Probab=99.62  E-value=3.1e-15  Score=122.55  Aligned_cols=159  Identities=13%  Similarity=0.146  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-C-CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-L-AFSEEDRNENVRRA-AECAKMFAECGFIALCS  100 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-~-~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d  100 (272)
                      .|+|+|+|||||||+|+.|+++|     ++.++|.|.+.+..... . .+.......+++.. ..+.+.+...+..||..
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~l-----g~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~   77 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTL-----SFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIAT   77 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEEC
Confidence            59999999999999999999999     45568888765543211 0 00011112233333 23444555555566643


Q ss_pred             CCC-CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC----CCCCcEEEeCC
Q psy17388        101 FVS-PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA----PKNPDLILETV  175 (272)
Q Consensus       101 ~~~-~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~----~~~~~~~Idt~  175 (272)
                      +.. ....  +.+ ..+.+.+   .+|||++|++++.+|+..+........ ......+...|+.    ...++++|||+
T Consensus        78 g~g~vl~~--~~~-~~l~~~~---~vv~L~~~~~~l~~Rl~~r~~rp~~~~-~~~~~~i~~~~~~r~~~y~~ad~~Idt~  150 (171)
T PRK13947         78 GGGVVLNP--ENV-VQLRKNG---VVICLKARPEVILRRVGKKKSRPLLMV-GDPEERIKELLKEREPFYDFADYTIDTG  150 (171)
T ss_pred             CCCCcCCH--HHH-HHHHhCC---EEEEEECCHHHHHHHhcCCCCCCCCCC-CChHHHHHHHHHHHHHHHHhcCEEEECC
Confidence            321 1111  122 2334444   579999999999999964421100000 0001111111111    12468999999


Q ss_pred             CCCHHHHHHHHHH-HHHhCC
Q psy17388        176 NVPVEKCANSVLD-MIAAKG  194 (272)
Q Consensus       176 ~~~~ee~~~~I~~-~L~~~~  194 (272)
                      +.++++++++|.+ ++.++|
T Consensus       151 ~~~~~~i~~~I~~~~~~~~~  170 (171)
T PRK13947        151 DMTIDEVAEEIIKAYLKLKN  170 (171)
T ss_pred             CCCHHHHHHHHHHHHHhhhc
Confidence            9999999999999 776653

>PRK13949 shikimate kinase; Provisional

Probab=99.61  E-value=2e-15  Score=123.84  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-cc--CCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-AN--LAFSEEDRNENVRRA-AECAKMFAECGFIALC   99 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~--~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~   99 (272)
                      .|+|+|+|||||||+++.|++.+     ++.++|.|.+.+... ..  ..|.. ...+.++.+ .++++.+......||+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D~~i~~~~~~~~~~~~~~-~g~~~fr~~e~~~l~~l~~~~~~vis   76 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLDFFIENRFHKTVGDIFAE-RGEAVFRELERNMLHEVAEFEDVVIS   76 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCCeecccHHHHHHHCccHHHHHHH-hCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            58999999999999999999999     566788886643211 11  11111 112233333 3444555545556775


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc--cc-cccccccCC---C-CCCCcEEE
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI--KS-FTGVSQPYE---A-PKNPDLIL  172 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~--~~-~~~~~~~ye---~-~~~~~~~I  172 (272)
                      ++....  .......++++.|   ++|||++|++++.+|+..+...+......  +. +..+...|+   + +..++++|
T Consensus        77 ~Ggg~~--~~~~~~~~l~~~~---~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~i  151 (169)
T PRK13949         77 TGGGAP--CFFDNMELMNASG---TTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIF  151 (169)
T ss_pred             cCCccc--CCHHHHHHHHhCC---eEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence            543321  1112223444455   67999999999999985321111000000  00 001111121   1 12367999


Q ss_pred             eCCCCCHHHHHHHHHHHH
Q psy17388        173 ETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L  190 (272)
                      |+++.+++++++.|++.|
T Consensus       152 d~~~~~~~e~~~~I~~~~  169 (169)
T PRK13949        152 NADKLEDESQIEQLVQRL  169 (169)
T ss_pred             ECCCCCHHHHHHHHHHhC
Confidence            999999999999998753

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.60  E-value=2.3e-14  Score=118.29  Aligned_cols=154  Identities=19%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHh---
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAE---   92 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~---   92 (272)
                      ++.+++|.|++||||||+++.|+..+     +..++++|.+...     +..+.++....+..+...+.+.+..+..   
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l-----~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALF-----SAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE   76 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc-----CCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999998     4568999986442     1224555555555555555555443322   


Q ss_pred             CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccccc---CCCCC--C
Q psy17388         93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQP---YEAPK--N  167 (272)
Q Consensus        93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~---ye~~~--~  167 (272)
                      .| .|++++..  ..+|+    ++++.+.+|..|||+||.+++.+|+.+|.      ++......+.++   |++|.  .
T Consensus        77 ~g-~iv~s~~~--~~~R~----~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~------~~~~~~~vl~~Q~~~~e~~~~~e  143 (176)
T PRK09825         77 TG-FIVCSSLK--KQYRD----ILRKSSPNVHFLWLDGDYETILARMQRRA------GHFMPPDLLQSQFDALERPCADE  143 (176)
T ss_pred             CE-EEEEEecC--HHHHH----HHHhhCCCEEEEEEeCCHHHHHHHHhccc------CCCCCHHHHHHHHHHcCCCCCCc
Confidence            33 34455432  34444    44556778999999999999999997652      222222223333   34442  2


Q ss_pred             -CcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        168 -PDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       168 -~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       ..+.||++ .+++++++++...+.+.
T Consensus       144 ~~~~~~d~~-~~~~~~~~~~~~~~~~~  169 (176)
T PRK09825        144 HDIARIDVN-HDIENVTEQCRQAVQAF  169 (176)
T ss_pred             CCeEEEECC-CCHHHHHHHHHHHHHHH
Confidence             23678875 57888999998888754

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.58  E-value=1.8e-14  Score=114.46  Aligned_cols=154  Identities=19%  Similarity=0.285  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHH------HH-HHHHHHHHHHHhCCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE------NV-RRAAECAKMFAECGF   95 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~------~~-~~i~~~~~~~~~~g~   95 (272)
                      ++|.|.|+|||||||+|+.|++.+   |++  +++...+.+.+....+++-.+...      .+ ..+...++.+..+|.
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~---gl~--~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~n   75 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHL---GLK--LVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGN   75 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHh---CCc--eeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCC
Confidence            479999999999999999999999   444  455444433344433333221111      11 122334455666777


Q ss_pred             eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh---hhhhhhc----------cccccccccccC
Q psy17388         96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH---YKKAREG----------KIKSFTGVSQPY  162 (272)
Q Consensus        96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~---~~~~r~~----------~~~~~~~~~~~y  162 (272)
                      +|+-+.+..|      +   ++  ..+.+.|||.+|.+++.+|+.+|.   +...+..          +...+.+++-. 
T Consensus        76 vVlegrLA~W------i---~k--~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDid-  143 (179)
T COG1102          76 VVLEGRLAGW------I---VR--EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDID-  143 (179)
T ss_pred             eEEhhhhHHH------H---hc--cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc-
Confidence            7776655432      1   11  235588999999999999998772   1111111          11112222111 


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        163 EAPKNPDLILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                       .....|++|||++.+++++..-|..++....
T Consensus       144 -DlSiyDLVinTs~~~~~~v~~il~~aid~~~  174 (179)
T COG1102         144 -DLSIYDLVINTSKWDPEEVFLILLDAIDALS  174 (179)
T ss_pred             -cceeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence             1235689999999999999998888887653

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.56  E-value=5.3e-14  Score=125.44  Aligned_cols=117  Identities=21%  Similarity=0.265  Sum_probs=88.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-----LAFSEEDRNENVRRAAECAKMFAECGFI   96 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~g~~   96 (272)
                      +.+|+++|+|||||||+|+.|++.+.    ++.+++.|.++..+...     ..|...............+...+..|..
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~   77 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS   77 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence            47899999999999999999999983    57889999988765321     1232222111122233445556678888


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ||+|..+.....+..+..+++..+..+..|||++|.+++.+|+.+|
T Consensus        78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R  123 (300)
T PHA02530         78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR  123 (300)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence            8888877777888888888888888888899999999999999776

>PLN02199 shikimate kinase

Probab=99.55  E-value=2.4e-14  Score=125.52  Aligned_cols=160  Identities=13%  Similarity=0.162  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC----CCCHHHHHHHHHHH-HHHHHHHHhCCC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL----AFSEEDRNENVRRA-AECAKMFAECGF   95 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~----~~~~~~~~~~~~~i-~~~~~~~~~~g~   95 (272)
                      ++..|+|+|++||||||+++.|++.+     ++.++|.|.+.+....+.    .|. ...+..++.. .++.+.+.....
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~L-----g~~fIDtD~lIe~~~~G~sI~eIf~-~~GE~~FR~~E~e~L~~L~~~~~  174 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVL-----GYTFFDCDTLIEQAMNGTSVAEIFV-HHGENFFRGKETDALKKLSSRYQ  174 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEehHHHHHHHhcCCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999     566789997655431111    111 1122333333 445555555555


Q ss_pred             eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh-hhhhhhh-cc-ccc----cccccccCCC----
Q psy17388         96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG-HYKKARE-GK-IKS----FTGVSQPYEA----  164 (272)
Q Consensus        96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r-~~~~~r~-~~-~~~----~~~~~~~ye~----  164 (272)
                      .||..+...  ..+...+.++. .|   ++|||++|++++.+|+.+. ...+... .. ...    ...+...|+.    
T Consensus       175 ~VIStGGG~--V~~~~n~~~L~-~G---~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl  248 (303)
T PLN02199        175 VVVSTGGGA--VIRPINWKYMH-KG---ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA  248 (303)
T ss_pred             EEEECCCcc--cCCHHHHHHHh-CC---eEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence            677655443  23333344444 35   6799999999999999641 0000000 00 000    0112221221    


Q ss_pred             CCCCcEEEe------------CCCCCHHHHHHHHHHHHHh
Q psy17388        165 PKNPDLILE------------TVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       165 ~~~~~~~Id------------t~~~~~ee~~~~I~~~L~~  192 (272)
                      +..++++|+            |++.++++++.+|++.+..
T Consensus       249 Y~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~  288 (303)
T PLN02199        249 YTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLS  288 (303)
T ss_pred             HHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHH
Confidence            224789998            7899999999999888775

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.54  E-value=4.7e-14  Score=133.61  Aligned_cols=127  Identities=18%  Similarity=0.223  Sum_probs=99.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ..+|.+|+++|+|||||||+|+.+++..     +..+++.|.+..                ++.....++..+.+|..||
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~lg~----------------~~~~~~~a~~~L~~G~sVV  424 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTLGS----------------TQNCLTACERALDQGKRCA  424 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHHHH----------------HHHHHHHHHHHHhCCCcEE
Confidence            3578899999999999999999999876     567788886521                2334455777888999999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc--cccccccccCCCCC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI--KSFTGVSQPYEAPK  166 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~--~~~~~~~~~ye~~~  166 (272)
                      +|.++.....|..+.++++.+|+++..||+++|.+++++|+..|.........+  ..+..+.+.|++|.
T Consensus       425 IDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt  494 (526)
T TIGR01663       425 IDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPA  494 (526)
T ss_pred             EECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCC
Confidence            999999999999999999999999999999999999999997764321111222  12445667788764

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.54  E-value=3.7e-13  Score=121.19  Aligned_cols=145  Identities=17%  Similarity=0.227  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccccccccc--------cCCCCHHHH------------------
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNLRNGINA--------NLAFSEEDR------------------   76 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i~~~l~~--------~~~~~~~~~------------------   76 (272)
                      +++|+|+|||||||+++.|++.|. ..|+++.+++.|++......        ...| ...|                  
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-k~~R~~i~~~le~~v~a~~~g~   79 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-KQFRQELLKYLEHFLVAVINGS   79 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-HHHHHHHHHHHHHHHHHhcCcc
Confidence            468999999999999999999997 57999999999987631110        0001 0011                  


Q ss_pred             -------------HHHHHHH-----------------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEE
Q psy17388         77 -------------NENVRRA-----------------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEV  126 (272)
Q Consensus        77 -------------~~~~~~i-----------------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V  126 (272)
                                   ...++.+                 ..++...+..+..||+|..+....+|..+.++++.++.++.+|
T Consensus        80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V  159 (340)
T TIGR03575        80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL  159 (340)
T ss_pred             cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence                         1111111                 0112222245567889999999999999999999999999999


Q ss_pred             EEeCCHHHHHHhhhhhhhhhhhhcccc--ccccccccCCCC-------CCCcEEEeCC
Q psy17388        127 FVNTPVEICEQRDVKGHYKKAREGKIK--SFTGVSQPYEAP-------KNPDLILETV  175 (272)
Q Consensus       127 ~L~~~~e~~~~Rl~~r~~~~~r~~~~~--~~~~~~~~ye~~-------~~~~~~Idt~  175 (272)
                      |+++|.+++.+|+.+|.      ..+.  .+..+..+|+.|       +.|.++++++
T Consensus       160 ~ld~ple~~l~RN~~R~------~~v~devie~m~~r~E~P~~~~nrWd~pl~~v~~~  211 (340)
T TIGR03575       160 FLDCPVESCLLRNKQRP------VPLPDETIQLMGRKIEKPNPEKNAWEHNSLVIQSS  211 (340)
T ss_pred             EEeCCHHHHHHHHhcCC------CCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEEecC
Confidence            99999999999997652      1111  122334455543       4567888873

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK08233 hypothetical protein; Provisional

Probab=99.54  E-value=1.1e-13  Score=114.14  Aligned_cols=161  Identities=18%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-------cccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-------GINANLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-------~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      ++.+|+|+|+|||||||+|+.|++.++  +..+.+.|.+....       .......+..    ..+..+.+..+.+.+.
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDKGANYSE----WVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhhccCChhh----hhhHHHHHHHHHHHcC
Confidence            568999999999999999999999984  23455565543211       0111112211    1122222333333333


Q ss_pred             C--CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc----cccc-cccccCC---
Q psy17388         94 G--FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI----KSFT-GVSQPYE---  163 (272)
Q Consensus        94 g--~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~----~~~~-~~~~~ye---  163 (272)
                      .  .+||+++...  .....+...+      ..+|||++|.+++.+|+.+|.+.......+    ..+. ..+..|.   
T Consensus        76 ~~~~~vivd~~~~--~~~~~~~~~~------d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  147 (182)
T PRK08233         76 SNVDYIIVDYPFA--YLNSEMRQFI------DVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEAL  147 (182)
T ss_pred             CCceEEEEeeehh--hccHHHHHHc------CEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence            3  3566665332  2222333322      378999999999999876664321111111    1111 1122222   


Q ss_pred             -C-CCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCC
Q psy17388        164 -A-PKNPDLILETVNVPVEKCANSVLDMIAAKGLI  196 (272)
Q Consensus       164 -~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~  196 (272)
                       . +..++++||+ +.+++++.++|.+.|..+.+|
T Consensus       148 ~~~~~~~~~vId~-~~~~e~i~~~i~~~l~~~~~~  181 (182)
T PRK08233        148 HTVKPNADIVLDG-ALSVEEIINQIEEELYRREVI  181 (182)
T ss_pred             hcCccCCeEEEcC-CCCHHHHHHHHHHHHHhCCcc
Confidence             1 2345788886 479999999999999988765

>PRK00625 shikimate kinase; Provisional

Probab=99.53  E-value=1.5e-14  Score=118.97  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c----c--CCCCHHHHHHHHHHHH-HHHHHHHhCCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A----N--LAFSEEDRNENVRRAA-ECAKMFAECGF   95 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~----~--~~~~~~~~~~~~~~i~-~~~~~~~~~g~   95 (272)
                      .|+|+|+|||||||+|+.|++.+     ++.++|.|.+.+... .    .  ..|. ....+.++... .+.+.+.. +.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D~~I~~~~g~~~~~~i~eif~-~~Ge~~fr~~E~~~l~~l~~-~~   74 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTDDLIVSNYHGALYSSPKEIYQ-AYGEEGFCREEFLALTSLPV-IP   74 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhhHHHHHHhCCCCCCCHHHHHH-HHCHHHHHHHHHHHHHHhcc-CC
Confidence            69999999999999999999999     566788887643211 1    0  0111 11223333332 33344433 44


Q ss_pred             eEEEcC-CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh--hccccc-cccccccCCCCCCCcEE
Q psy17388         96 IALCSF-VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR--EGKIKS-FTGVSQPYEAPKNPDLI  171 (272)
Q Consensus        96 ~VI~d~-~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r--~~~~~~-~~~~~~~ye~~~~~~~~  171 (272)
                      .||..+ ....   ....++.++..+   .+|||++|++++.+|+.+|.+....  ...+.. +......|+.  .++++
T Consensus        75 ~VIs~GGg~~~---~~e~~~~l~~~~---~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~--~ad~~  146 (173)
T PRK00625         75 SIVALGGGTLM---IEPSYAHIRNRG---LLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRS--IADYI  146 (173)
T ss_pred             eEEECCCCccC---CHHHHHHHhcCC---EEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHH--HCCEE
Confidence            455443 3221   123333444443   6899999999999999766321100  001111 1111222432  24554


Q ss_pred             ------EeCCCCCHHHHHHHHHHHH
Q psy17388        172 ------LETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       172 ------Idt~~~~~ee~~~~I~~~L  190 (272)
                            +.|++.++.++++.++..|
T Consensus       147 i~~~~~~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        147 FSLDHVAETSSESLMRACQSFCTLL  171 (173)
T ss_pred             EeCCCcccCCCCCHHHHHHHHHHHh
Confidence                  5666777888888887765

>PRK04182 cytidylate kinase; Provisional

Probab=99.53  E-value=1.1e-13  Score=113.88  Aligned_cols=155  Identities=15%  Similarity=0.166  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHH-------HHHHHHHHHHHHH-hCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE-------NVRRAAECAKMFA-ECG   94 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~g   94 (272)
                      ++|+|+|.|||||||+|+.|++.+     +..++|.|.+...+....+.+......       ..+.+......+. ..+
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~l-----g~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKL-----GLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKED   75 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc-----CCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999999     456677554332222111111111000       0011222223333 445


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh---hhhhhc----cccccccccccCC----
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY---KKAREG----KIKSFTGVSQPYE----  163 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~---~~~r~~----~~~~~~~~~~~ye----  163 (272)
                      .+|+......+         +.+  ..+.++|||++|++++.+|+.+|..   ......    +......+...|.    
T Consensus        76 ~~Vi~g~~~~~---------~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~  144 (180)
T PRK04182         76 NVVLEGRLAGW---------MAK--DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDID  144 (180)
T ss_pred             CEEEEEeecce---------Eec--CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            55554322221         111  1144789999999999999976521   001000    0000000111121    


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        164 APKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       164 ~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .+..++++|||+..+++++++.|.+.+.+.
T Consensus       145 ~~~~~d~~idt~~~~~~~~~~~I~~~~~~~  174 (180)
T PRK04182        145 DLSIYDLVINTSRWDPEGVFDIILTAIDKL  174 (180)
T ss_pred             ccccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence            234678999999999999999999988753

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.53  E-value=3.3e-14  Score=127.46  Aligned_cols=173  Identities=15%  Similarity=0.173  Sum_probs=99.4

Q ss_pred             hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHH-----HHHHHHHHH-HHH
Q psy17388         13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEE-----DRNENVRRA-AEC   86 (272)
Q Consensus        13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~-----~~~~~~~~i-~~~   86 (272)
                      .+..+...++..|+|+|+|||||||+++.|++.|   |++  ++|.|.......   +.+..     .....++.+ .+.
T Consensus       124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~--~id~D~~i~~~~---G~~i~ei~~~~G~~~fr~~e~~~  195 (309)
T PRK08154        124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL---GVP--FVELNREIEREA---GLSVSEIFALYGQEGYRRLERRA  195 (309)
T ss_pred             HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEeHHHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHH
Confidence            3444455678899999999999999999999999   555  456665433211   11111     112223332 222


Q ss_pred             HHHH-HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc---ccccccccccC
Q psy17388         87 AKMF-AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK---IKSFTGVSQPY  162 (272)
Q Consensus        87 ~~~~-~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~---~~~~~~~~~~y  162 (272)
                      ...+ .+.+..||..+.... .....+..+..    .+++|||++|++++.+|+.++...+.....   ...+..+....
T Consensus       196 l~~ll~~~~~~VI~~Ggg~v-~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R  270 (309)
T PRK08154        196 LERLIAEHEEMVLATGGGIV-SEPATFDLLLS----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR  270 (309)
T ss_pred             HHHHHhhCCCEEEECCCchh-CCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence            3333 334556666544321 11111112222    347899999999999999654211100000   01111111111


Q ss_pred             CC-CCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy17388        163 EA-PKNPDLILETVNVPVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       163 e~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      .+ ...++++|+|+..++++++++|...+...-++|.
T Consensus       271 ~~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~~~~  307 (309)
T PRK08154        271 EPLYARADAVVDTSGLTVAQSLARLRELVRPALGLPA  307 (309)
T ss_pred             HHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHhccCC
Confidence            11 1247899999999999999999999988777774

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.51  E-value=7.5e-14  Score=114.43  Aligned_cols=156  Identities=15%  Similarity=0.232  Sum_probs=89.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC--CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL--AFSEEDRNENVRRA-AECAKMFAECGFIALC   99 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~--~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~   99 (272)
                      ..|+|+|++||||||+|+.|++++     +..++|.|.+.+......  .+......+.++.. .++.+. +..+..||.
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l-----g~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~-~~~~~~vi~   76 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL-----GYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEA-VTAPSTVIA   76 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHH-hcCCCeEEE
Confidence            358899999999999999999999     456789888765332110  01111112223222 223333 334555665


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh---c-c----ccc-cccccccCCCCCCCcE
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE---G-K----IKS-FTGVSQPYEAPKNPDL  170 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~---~-~----~~~-~~~~~~~ye~~~~~~~  170 (272)
                      .+...  ..+...+.+++..+   ++|||++|++++.+|+.++.....|.   + .    ... +......|..  .+++
T Consensus        77 ~ggg~--vl~~~~~~~l~~~~---~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~--~a~~  149 (171)
T PRK03731         77 TGGGI--ILTEENRHFMRNNG---IVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYRE--VAHH  149 (171)
T ss_pred             CCCCc--cCCHHHHHHHHhCC---EEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHH--hCCE
Confidence            43322  11223344445444   68999999999999996542111010   0 0    000 1111122322  3468


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHh
Q psy17388        171 ILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       171 ~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +||++ .++++++++|.+.+..
T Consensus       150 ~Id~~-~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        150 IIDAT-QPPSQVVSEILSALAQ  170 (171)
T ss_pred             EEcCC-CCHHHHHHHHHHHHhc
Confidence            99976 7999999999998863

>PRK03839 putative kinase; Provisional

Probab=99.51  E-value=1.7e-13  Score=113.38  Aligned_cols=155  Identities=13%  Similarity=0.099  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS  103 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~  103 (272)
                      .|+|+|+|||||||+|+.|++++     ++.++|.|.+.........+... ....++.+...+..... +..+|.++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~vIidG~~   74 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLTEFALKKGIGEEKDDE-MEIDFDKLAYFIEEEFK-EKNVVLDGHL   74 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehhhhhhhcCCcccCChh-hhcCHHHHHHHHHHhcc-CCCEEEEecc
Confidence            69999999999999999999999     55667777654322111112211 12223333332222222 3345555422


Q ss_pred             CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-cc-ccccc--ccccCCCCCCCcEEEeCCCCCH
Q psy17388        104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-KI-KSFTG--VSQPYEAPKNPDLILETVNVPV  179 (272)
Q Consensus       104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-~~-~~~~~--~~~~ye~~~~~~~~Idt~~~~~  179 (272)
                      .      .   + ..   +..+|||+++++++.+|+.+|...+.... .. ..+..  ....|.. ..+.+.||+++.++
T Consensus        75 ~------~---l-~~---~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~Id~~~~s~  140 (180)
T PRK03839         75 S------H---L-LP---VDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEE-KEKVIEVDTTGKTP  140 (180)
T ss_pred             c------c---c-cC---CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh-cCCEEEEECCCCCH
Confidence            1      1   1 11   23679999999999999976532111100 00 00100  0011222 23457899988899


Q ss_pred             HHHHHHHHHHHHhCCCCCCc
Q psy17388        180 EKCANSVLDMIAAKGLIPAR  199 (272)
Q Consensus       180 ee~~~~I~~~L~~~~~~~~~  199 (272)
                      ++++++|.+.+.....-+.+
T Consensus       141 eev~~~I~~~l~~~~~~~~~  160 (180)
T PRK03839        141 EEVVEEILELIKSGKKRKVG  160 (180)
T ss_pred             HHHHHHHHHHHhcCCCCCCC
Confidence            99999999999876444433

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.49  E-value=2.7e-13  Score=130.00  Aligned_cols=163  Identities=15%  Similarity=0.142  Sum_probs=100.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCCCHHHHHHHHHHH-HHHHHHHHhCCCe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAFSEEDRNENVRRA-AECAKMFAECGFI   96 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~   96 (272)
                      +...|+|+|+|||||||+++.|++.|     +..++|.|...+...   ....|. ...++.++.+ .++++.+......
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L-----~~~fiD~D~~ie~~~g~si~eif~-~~Ge~~FR~~E~~~l~~~~~~~~~   78 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMM-----RLPFADADVEIEREIGMSIPSYFE-EYGEPAFREVEADVVADMLEDFDG   78 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHh-----CCCEEEchHHHHHHHCcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCe
Confidence            44579999999999999999999999     566788887544222   111122 2334445544 3445555544445


Q ss_pred             EEEcCCC-C-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc----cccccccc-cccCCCCCCCc
Q psy17388         97 ALCSFVS-P-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG----KIKSFTGV-SQPYEAPKNPD  169 (272)
Q Consensus        97 VI~d~~~-~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~----~~~~~~~~-~~~ye~~~~~~  169 (272)
                      ||..+.. . ....+..+.+++++.|   .+|||++|++++.+|+..+..+..-.+    ++..+... ...|+  ..++
T Consensus        79 VIs~GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~--~~Ad  153 (542)
T PRK14021         79 IFSLGGGAPMTPSTQHALASYIAHGG---RVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFR--QVAN  153 (542)
T ss_pred             EEECCCchhCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHH--hhCC
Confidence            6644322 2 2344555555556655   779999999999999853210000000    11111111 12232  2478


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        170 LILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       170 ~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                      ++|++++.++++++++|++.+....
T Consensus       154 ~~i~~~~~~~~~~~~~i~~~~~~~~  178 (542)
T PRK14021        154 VHVHTRGLTPQAAAKKLIDMVAERT  178 (542)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998643

>PRK13973 thymidylate kinase; Provisional

Probab=99.49  E-value=1.2e-12  Score=111.30  Aligned_cols=171  Identities=14%  Similarity=0.166  Sum_probs=98.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-------Ccccccccccc--CCCCHHHHHH-----HHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-------GDNLRNGINAN--LAFSEEDRNE-----NVRRAAEC   86 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-------~D~i~~~l~~~--~~~~~~~~~~-----~~~~i~~~   86 (272)
                      +|++|+|.|.+||||||+++.|++.|...|+++.+..       ++.+++.+..+  ..+++....-     ....+...
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~   81 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV   81 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999998888877663       22233322211  1122211100     01122234


Q ss_pred             HHHHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh--hhhc--
Q psy17388         87 AKMFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK--AREG--  150 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~--~r~~--  150 (272)
                      +...+..|.+||+|.....            ..+...+.........|.++|||++|++++.+|+.+|....  .+..  
T Consensus        82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~  161 (213)
T PRK13973         82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE  161 (213)
T ss_pred             HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence            5556778999998853311            11223333222222458899999999999999987663110  0100  


Q ss_pred             cccccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        151 KIKSFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       151 ~~~~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ....+......|...    ...-++||+ +.+++++.++|.+.+..
T Consensus       162 ~~~~~~~~~~~y~~l~~~~~~~~~~Ida-~~~~e~V~~~I~~~i~~  206 (213)
T PRK13973        162 DLAFHEKRREAFLQIAAQEPERCVVIDA-TASPEAVAAEIWAAVDQ  206 (213)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcEEEEcC-CCCHHHHHHHHHHHHHH
Confidence            001111122222211    111245665 67999999999998875

>PLN02924 thymidylate kinase

Probab=99.48  E-value=1e-12  Score=112.20  Aligned_cols=165  Identities=12%  Similarity=0.186  Sum_probs=100.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc--------cccccccccCCCCHH--------HHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD--------NLRNGINANLAFSEE--------DRNENVRRA   83 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D--------~i~~~l~~~~~~~~~--------~~~~~~~~i   83 (272)
                      ++|++|+|.|.+||||||+++.|++.|..+|+.+.++..-        .+++.+......++.        +|.+.    
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~----   89 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK----   89 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH----
Confidence            5689999999999999999999999999888877554311        122222111112211        12111    


Q ss_pred             HHHHHHHHhCCCeEEEcCCCCcH--------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388         84 AECAKMFAECGFIALCSFVSPTA--------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSF  155 (272)
Q Consensus        84 ~~~~~~~~~~g~~VI~d~~~~~~--------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~  155 (272)
                      ...+...++.|.+||+|......        ...+++..+......|.++|||++|++++.+|...+.   .+......+
T Consensus        90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~---~~~E~~~~~  166 (220)
T PLN02924         90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG---ERYEKLEFQ  166 (220)
T ss_pred             HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccccHHHH
Confidence            12345566789999998644311        0123334443333458899999999999999964220   111111122


Q ss_pred             ccccccCCCCCCCcE-EEeCCCCCHHHHHHHHHHHHHh
Q psy17388        156 TGVSQPYEAPKNPDL-ILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       156 ~~~~~~ye~~~~~~~-~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..++..|.......+ +||. +.+++++.++|.+.+..
T Consensus       167 ~rv~~~Y~~la~~~~~vIDa-~~sieeV~~~I~~~I~~  203 (220)
T PLN02924        167 KKVAKRFQTLRDSSWKIIDA-SQSIEEVEKKIREVVLD  203 (220)
T ss_pred             HHHHHHHHHHhhcCEEEECC-CCCHHHHHHHHHHHHHH
Confidence            334555543322344 4554 68999999999998875

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.46  E-value=1.5e-12  Score=109.42  Aligned_cols=171  Identities=14%  Similarity=0.154  Sum_probs=93.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccc-cCCCCHHHH-----HHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINA-NLAFSEEDR-----NENVRRAAECA   87 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~-~~~~~~~~~-----~~~~~~i~~~~   87 (272)
                      ++++|+|.|++||||||+++.|++.|...|.++.+...-       .++..+.. ...+.....     ...+....+..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i   81 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVI   81 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999998777665543211       11111111 011111110     00111222233


Q ss_pred             HHHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhh-hhhhccccc
Q psy17388         88 KMFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYK-KAREGKIKS  154 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~-~~r~~~~~~  154 (272)
                      ...+..|.+||+|.....            ..+...+...+.....+.++|||++|++++.+|+.+|... .........
T Consensus        82 ~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~  161 (205)
T PRK00698         82 KPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLDF  161 (205)
T ss_pred             HHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHH
Confidence            444567889998832111            1122222223322245779999999999999999766310 000000011


Q ss_pred             cccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        155 FTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       155 ~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +..+...|+..    ....++||++ .+++++.++|.+.+.+
T Consensus       162 ~~~~~~~y~~~~~~~~~~~~~Id~~-~~~e~v~~~i~~~i~~  202 (205)
T PRK00698        162 FERVREGYLELAEKEPERIVVIDAS-QSLEEVHEDILAVIKA  202 (205)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHHHH
Confidence            11222233321    1224677764 6899999999988865

>PRK14532 adenylate kinase; Provisional

Probab=99.45  E-value=7.6e-13  Score=110.15  Aligned_cols=160  Identities=17%  Similarity=0.109  Sum_probs=89.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHH----------HHHHHH-HHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDR----------NENVRR-AAECAKMFA   91 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~----------~~~~~~-i~~~~~~~~   91 (272)
                      .|+|.|+|||||||+|+.|++.+     ++.+++.+++ ++.+..+.......+          .+.... +.+.... .
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~   75 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPE-A   75 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhC-c
Confidence            58999999999999999999998     6778888544 443221100000000          011111 1111111 1


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCc-eEEEEEeCCHHHHHHhhhhhhhhhhhhccc-ccc-ccc----------
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHRNANLE-FFEVFVNTPVEICEQRDVKGHYKKAREGKI-KSF-TGV----------  158 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~-~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~-~~~-~~~----------  158 (272)
                      ..+..+|.|+.......++.+..++...|.. ..+|||++|++++.+|+.+|.....|.... ..+ ..+          
T Consensus        76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i  155 (188)
T PRK14532         76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL  155 (188)
T ss_pred             CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            2345566675444455666666666666543 378999999999999997663211111100 000 011          


Q ss_pred             cccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        159 SQPYEAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       159 ~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ...|... .--+.||. +.+++++.++|.+.|.
T Consensus       156 ~~~y~~~-~~~~~id~-~~~~eev~~~I~~~l~  186 (188)
T PRK14532        156 LPYYAGQ-GKLTEVDG-MGSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHh
Confidence            1223321 12245554 5799999999998884

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.45  E-value=1e-12  Score=107.23  Aligned_cols=150  Identities=17%  Similarity=0.204  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHH---H----HHHHHHHHHHHHHHH-hCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEED---R----NENVRRAAECAKMFA-ECG   94 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~---~----~~~~~~i~~~~~~~~-~~g   94 (272)
                      ++|+|+|.+||||||+|+.|++.+     ++.+++.|.+...+....+.+...   .    ......+......+. ..+
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~l-----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   75 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKL-----SLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEK   75 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc-----CCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999998     566788765443332222222111   0    011112223333343 344


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh---hhhhhccccccc-----cccccC----
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY---KKAREGKIKSFT-----GVSQPY----  162 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~---~~~r~~~~~~~~-----~~~~~y----  162 (272)
                      .+||......+      .   ..  +.+.+.|||+||.+++.+|+.+|..   ...+. .+....     .....|    
T Consensus        76 ~~Vi~g~~~~~------~---~~--~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~-~~~~~d~~~~~~~~~~~~~~~  143 (171)
T TIGR02173        76 NVVLESRLAGW------I---VR--EYADVKIWLKAPLEVRARRIAKREGKSLTVARS-ETIEREESEKRRYLKFYGIDI  143 (171)
T ss_pred             CEEEEecccce------e---ec--CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHHHhCCCc
Confidence            45553322221      0   11  1123679999999999999976621   11110 000000     011111    


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        163 EAPKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      ..+...|++|||+..++++ ++.|.+++
T Consensus       144 ~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       144 DDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             cccccccEEEECCCCCHHH-HHHHHHHh
Confidence            2235668999999999999 99998875

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14527 adenylate kinase; Provisional

Probab=99.44  E-value=1.8e-12  Score=108.24  Aligned_cols=163  Identities=13%  Similarity=0.127  Sum_probs=94.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKMF   90 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~   90 (272)
                      .+|.+|+|.|+|||||||+|+.|++++     ++.+++.+++ +.....+..+....+ ..+        ..+..++...
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~-----~~~~is~gd~~r~~~~~~~~~~~~~~-~~~~~g~~~p~~~~~~l~~~~   77 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQEL-----GLKKLSTGDILRDHVARGTELGQRAK-PIMEAGDLVPDELILALIRDE   77 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCCCCCccHHHHHHHhcCcHHHHHHH-HHHHcCCCCcHHHHHHHHHHH
Confidence            568899999999999999999999998     5666776554 332221111110000 000        1122233332


Q ss_pred             HhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCce-EEEEEeCCHHHHHHhhhhhhhhhhhhccccc-ccc---------
Q psy17388         91 AEC--GFIALCSFVSPTAAARDRAREIHRNANLEF-FEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTG---------  157 (272)
Q Consensus        91 ~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~-~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~---------  157 (272)
                      +..  +..+|.|+.......++.+..++...|.++ .+|||+||.+++.+|+.+|.....|...... +..         
T Consensus        78 l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~  157 (191)
T PRK14527         78 LAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQT  157 (191)
T ss_pred             HhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHh
Confidence            222  345777754334556667777776666555 4689999999999999877432222221110 000         


Q ss_pred             --ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        158 --VSQPYEAPKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       158 --~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                        +.+.|... .--+.||. +.+++++.++|...|
T Consensus       158 ~~v~~~y~~~-~~~~~id~-~~~~~~v~~~i~~~l  190 (191)
T PRK14527        158 QPLVDYYEAR-GHLKRVDG-LGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHhh
Confidence              11122221 11256774 569999999988765

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.44  E-value=1e-13  Score=112.41  Aligned_cols=147  Identities=18%  Similarity=0.258  Sum_probs=84.4

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc---cCCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc-CCCCc
Q psy17388         31 SGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA---NLAFSEEDRNENVRRA-AECAKMFAECGFIALCS-FVSPT  105 (272)
Q Consensus        31 ~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~---~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d-~~~~~  105 (272)
                      |||||||+++.||+.|     ++.++|.|.+.+....   ...|... ..+.++.. .++++.+......||+. +... 
T Consensus         1 ~GsGKStvg~~lA~~L-----~~~fiD~D~~i~~~~g~si~~i~~~~-G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~-   73 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRL-----GRPFIDLDDEIEERTGMSISEIFAEE-GEEAFRELESEALRELLKENNCVIACGGGIV-   73 (158)
T ss_dssp             TTSSHHHHHHHHHHHH-----TSEEEEHHHHHHHHHTSHHHHHHHHH-HHHHHHHHHHHHHHHHHCSSSEEEEE-TTGG-
T ss_pred             CCCcHHHHHHHHHHHh-----CCCccccCHHHHHHhCCcHHHHHHcC-ChHHHHHHHHHHHHHHhccCcEEEeCCCCCc-
Confidence            7999999999999999     6778999877543221   1112222 22333333 45566666664555543 3332 


Q ss_pred             HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc------ccccccccCCCCCCCcEEEeCCCCCH
Q psy17388        106 AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK------SFTGVSQPYEAPKNPDLILETVNVPV  179 (272)
Q Consensus       106 ~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~------~~~~~~~~ye~~~~~~~~Idt~~~~~  179 (272)
                        .....+++++..|   .+|||+++++++.+|+..+..+..-.+...      .+......|+.  .++++++++..++
T Consensus        74 --~~~~~~~~L~~~g---~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~--~a~~~v~~~~~~~  146 (158)
T PF01202_consen   74 --LKEENRELLKENG---LVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQ--AADIVVDTDGSPP  146 (158)
T ss_dssp             --GSHHHHHHHHHHS---EEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHH--HSSEEEETSSCHH
T ss_pred             --CcHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHh--cCeEEEeCCCCCH
Confidence              2223334444434   789999999999999954421000000000      00011122332  3579999988888


Q ss_pred             HHHHHHHHHHHH
Q psy17388        180 EKCANSVLDMIA  191 (272)
Q Consensus       180 ee~~~~I~~~L~  191 (272)
                      ++++++|++.|+
T Consensus       147 ~~i~~~i~~~l~  158 (158)
T PF01202_consen  147 EEIAEEILEFLK  158 (158)
T ss_dssp             HHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhC
Confidence            999999999874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.44  E-value=2.4e-13  Score=109.16  Aligned_cols=140  Identities=17%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-C-CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEcC
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-L-AFSEEDRNENVRRA-AECAKMFAECGFIALCSF  101 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-~-~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d~  101 (272)
                      |+|+|+|||||||+|+.|++.+     ++.++|.|.+....... . .+........++.. .+....+...+..||..+
T Consensus         2 i~l~G~~GsGKstla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g   76 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL-----GLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATG   76 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh-----CCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECC
Confidence            8999999999999999999999     55678888775543321 0 01111112222222 334455555566666543


Q ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccc--cccc-------ccCCCCCCCcEEE
Q psy17388        102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSF--TGVS-------QPYEAPKNPDLIL  172 (272)
Q Consensus       102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~--~~~~-------~~ye~~~~~~~~I  172 (272)
                      .... ..... ++.+...   .++|||++|.+++.+|+..|.   .| ......  ..+.       ..|.  ..++++|
T Consensus        77 ~~~i-~~~~~-~~~~~~~---~~~i~l~~~~e~~~~R~~~r~---~r-~~~~~~~~~~~~~~~~~r~~~Y~--~~ad~~i  145 (154)
T cd00464          77 GGAV-LREEN-RRLLLEN---GIVVWLDASPEELLERLARDK---TR-PLLQDEDPERLRELLEEREPLYR--EVADLTI  145 (154)
T ss_pred             CCcc-CcHHH-HHHHHcC---CeEEEEeCCHHHHHHHhccCC---CC-CCCCCCCHHHHHHHHHHHHHHHH--HhCcEEE
Confidence            2211 11111 2333333   378999999999999996542   01 111110  0111       1222  2478999


Q ss_pred             eCCCCCHH
Q psy17388        173 ETVNVPVE  180 (272)
Q Consensus       173 dt~~~~~e  180 (272)
                      +|++++++
T Consensus       146 ~~~~~~~~  153 (154)
T cd00464         146 DTDELSPE  153 (154)
T ss_pred             ECCCCCCC
Confidence            99988875

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.43  E-value=2.7e-12  Score=108.24  Aligned_cols=173  Identities=17%  Similarity=0.255  Sum_probs=103.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------ccccccccc-CCCCHHHHH-----HHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINAN-LAFSEEDRN-----ENVRRAAEC   86 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~-~~~~~~~~~-----~~~~~i~~~   86 (272)
                      +++++|+|.|..||||||+++.|++.|..+|+++.+...-       .+++.+... ..+++....     ...+.+.+.
T Consensus         1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999877665421       122222211 223322111     111223455


Q ss_pred             HHHHHhCCCeEEEcCCCCcH-HH--------HHHHHH---HHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh--hccc
Q psy17388         87 AKMFAECGFIALCSFVSPTA-AA--------RDRARE---IHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR--EGKI  152 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~-~~--------r~~~~~---~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r--~~~~  152 (272)
                      ....+..|.+||+|...... .+        .+.+..   .+...-.|.+++||++|+++..+|..+|.....+  ....
T Consensus        81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~  160 (208)
T COG0125          81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD  160 (208)
T ss_pred             HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence            66677889999998432210 11        122222   2322125889999999999999999766321111  1111


Q ss_pred             cccccccccCCCC--CCC--cEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        153 KSFTGVSQPYEAP--KNP--DLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       153 ~~~~~~~~~ye~~--~~~--~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ..+..++..|..-  ..+  -++||. +.+++++.+.|.+.+...
T Consensus       161 ~f~~kvr~~Y~~la~~~~~r~~vIda-~~~~e~v~~~i~~~l~~~  204 (208)
T COG0125         161 EFLEKVREGYLELAAKFPERIIVIDA-SRPLEEVHEEILKILKER  204 (208)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEEC-CCCHHHHHHHHHHHHHHh
Confidence            1233345555431  122  356775 568999999999988764

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.43  E-value=7.7e-13  Score=109.47  Aligned_cols=159  Identities=18%  Similarity=0.125  Sum_probs=89.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHH--------HHHHHHHHHH-h-
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVR--------RAAECAKMFA-E-   92 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~~~-~-   92 (272)
                      +|+|+|+|||||||+|+.|++++     ++.+++. |.+++.+..+...... -...+.        .+..+....+ . 
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d~lr~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ll~~~~~~~   74 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGDLLRAEIKSGSENGEL-IESMIKNGKIVPSEVTVKLLKNAIQAD   74 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECChHHHHHHhcCChHHHH-HHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence            58999999999999999999999     6778886 5555443321111000 000000        0111222222 1 


Q ss_pred             CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccccc-----------cc
Q psy17388         93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFTGV-----------SQ  160 (272)
Q Consensus        93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~~~-----------~~  160 (272)
                      .+..+|.|+..........+..++.....+..+|||++|.+++.+|+.+|.....+... .+.+...           ..
T Consensus        75 ~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~  154 (183)
T TIGR01359        75 GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIE  154 (183)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            14567777654444556666655543223556899999999999999776422111111 0111110           11


Q ss_pred             cCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        161 PYEAPKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       161 ~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      .|... ..-+.||++ .+++++.++|.+.|
T Consensus       155 ~~~~~-~~~~~Id~~-~~~~~v~~~i~~~l  182 (183)
T TIGR01359       155 HYENK-GKVKEINAE-GSVEEVFEDVEKIF  182 (183)
T ss_pred             HHHhC-CCEEEEECC-CCHHHHHHHHHHHh
Confidence            12211 112577865 68999999998776

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.43  E-value=2.7e-12  Score=107.04  Aligned_cols=168  Identities=15%  Similarity=0.174  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccccC--CCCHHHHHH-----HHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINANL--AFSEEDRNE-----NVRRAAECAK   88 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~~--~~~~~~~~~-----~~~~i~~~~~   88 (272)
                      ++|+|.|++||||||+++.|++.+...|+.+..+...       .++..+....  .........     ......+...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   80 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK   80 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999998888777655321       1111111110  011110000     0111122233


Q ss_pred             HHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh-hcccccc
Q psy17388         89 MFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR-EGKIKSF  155 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r-~~~~~~~  155 (272)
                      .....|..||+|.....            ......+.........+..+|||++|++++.+|+.+|...... ......+
T Consensus        81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~  160 (200)
T cd01672          81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFH  160 (200)
T ss_pred             HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHH
Confidence            34567889998832210            1233344444443345778999999999999999766321111 0001111


Q ss_pred             ccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        156 TGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       156 ~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ..+...|+..    ....++||+ +.+++++.++|.+.|.
T Consensus       161 ~~~~~~y~~~~~~~~~~~~~id~-~~~~e~i~~~i~~~i~  199 (200)
T cd01672         161 ERVREGYLELAAQEPERIIVIDA-SQPLEEVLAEILKAIL  199 (200)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeC-CCCHHHHHHHHHHHHh
Confidence            1223333321    123467776 4689999999998875

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.41  E-value=5.6e-13  Score=125.86  Aligned_cols=166  Identities=13%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHHHHHHHHHHHHHHHH---
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRAAECAKMFA---   91 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~~~~~~i~~~~~~~~---   91 (272)
                      .+|.+|+|.|++||||||+|+.|++.|     ++.++|++.+.+.+.     .+..+.+.  ......+..+...+.   
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~YR~~a~~~l~~~~~~~~~--~~l~~l~~~l~~~~~~~~  354 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAMYRAVTWLVLQEGIDPQDE--EALAELLSDLKIELKPSS  354 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCceehHHHHHHHHcCcCCcCH--HHHHHHHhcCCeeeccCC
Confidence            367899999999999999999999999     678899888766432     12222221  111111100000000   


Q ss_pred             hCCCeEEEc------------------CCCCcHHHHHHHHHHHH----hCC--------------CceEEEEEeCCHHHH
Q psy17388         92 ECGFIALCS------------------FVSPTAAARDRAREIHR----NAN--------------LEFFEVFVNTPVEIC  135 (272)
Q Consensus        92 ~~g~~VI~d------------------~~~~~~~~r~~~~~~~~----~~g--------------~~~~~V~L~~~~e~~  135 (272)
                      ..+..|.++                  .++.....|+.+.+..+    ..|              -..+.|||+||++++
T Consensus       355 ~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~AdlKIfL~As~evR  434 (512)
T PRK13477        355 GSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVEER  434 (512)
T ss_pred             CCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCCCCEEEEEECCHHHH
Confidence            011122222                  22233444554433321    111              135889999999999


Q ss_pred             HHhhhhhhhhhhh-hccccc----ccc---ccc-cCCCC---CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        136 EQRDVKGHYKKAR-EGKIKS----FTG---VSQ-PYEAP---KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       136 ~~Rl~~r~~~~~r-~~~~~~----~~~---~~~-~ye~~---~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+|+.++...+.- ....+.    +..   .+. ++-.|   ..++++|||++++++++++.|++.+.+
T Consensus       435 a~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~i~~  503 (512)
T PRK13477        435 ARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRD  503 (512)
T ss_pred             HHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            9997544211110 000111    000   011 11112   235699999999999999999999975

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.40  E-value=7.4e-13  Score=106.63  Aligned_cols=148  Identities=18%  Similarity=0.190  Sum_probs=88.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHH---HHHHHHHHHHHHhCCCeEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNEN---VRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~---~~~i~~~~~~~~~~g~~VI   98 (272)
                      ++|.|+|.||+||||+|+.|+ .+   |+++..+. +.+.+ ++..  .++. .+...   ...+......++..+..||
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i~l~-el~~e~~~~~--~~de-~r~s~~vD~d~~~~~le~~~~~~~~Iv   72 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVIELN-ELAKENGLYT--EYDE-LRKSVIVDVDKLRKRLEELLREGSGIV   72 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-Hh---CCceeeHH-HHHHhcCCee--ccCC-ccceEEeeHHHHHHHHHHHhccCCeEe
Confidence            479999999999999999999 77   77766554 22211 1111  1110 00000   1111122222223455565


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc----cccCCCCCCCcEEEeC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV----SQPYEAPKNPDLILET  174 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~----~~~ye~~~~~~~~Idt  174 (272)
                      .+..+.          ++.   -..++|.|.|+++++.+|+..|.|....-.+.-..+.+    ...++.. .+.+.|||
T Consensus        73 d~H~~h----------l~~---~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~-~~v~evdt  138 (180)
T COG1936          73 DSHLSH----------LLP---DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF-EAVIEVDT  138 (180)
T ss_pred             echhhh----------cCC---CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CceEEEEC
Confidence            544332          222   13488999999999999999998765443322111111    1112222 45689999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q psy17388        175 VNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       175 ~~~~~ee~~~~I~~~L~~  192 (272)
                      ++.+++++++.|.+.+..
T Consensus       139 t~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         139 TNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             CCCCHHHHHHHHHHHHcc
Confidence            999999999999999995

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.40  E-value=2.6e-12  Score=107.34  Aligned_cols=165  Identities=15%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccc--cCCCCHHHHHHHH-----HHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINA--NLAFSEEDRNENV-----RRAAEC   86 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~--~~~~~~~~~~~~~-----~~i~~~   86 (272)
                      ++++|+|.|++||||||+++.|++.+...|+.+.++...       .++..+..  ...+........+     ..+.+.
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~   81 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK   81 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999998777766544321       11111111  1112211111110     112233


Q ss_pred             HHHHHhCCCeEEEcCCCCcH---------HHHHHHHHHHHhCC--CceEEEEEeCCHHHHHHhhhhhhhhhh-hhccccc
Q psy17388         87 AKMFAECGFIALCSFVSPTA---------AARDRAREIHRNAN--LEFFEVFVNTPVEICEQRDVKGHYKKA-REGKIKS  154 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~---------~~r~~~~~~~~~~g--~~~~~V~L~~~~e~~~~Rl~~r~~~~~-r~~~~~~  154 (272)
                      ....+..|.+||+|......         ...+++..+.....  .+.++|||++|++++++|+.+|..... .......
T Consensus        82 i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  161 (195)
T TIGR00041        82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDF  161 (195)
T ss_pred             HHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHH
Confidence            44455678899998432110         01122223222211  267899999999999999866532100 0001111


Q ss_pred             cccccccCCCC---CCCcEEEeCCCCCHHHHHHHH
Q psy17388        155 FTGVSQPYEAP---KNPDLILETVNVPVEKCANSV  186 (272)
Q Consensus       155 ~~~~~~~ye~~---~~~~~~Idt~~~~~ee~~~~I  186 (272)
                      +..+...|...   ..+.++||++ .+++++.++|
T Consensus       162 ~~~~~~~y~~~~~~~~~~~~id~~-~~~e~v~~~i  195 (195)
T TIGR00041       162 FEKVRQRYLELADKEKSIHVIDAT-NSVEEVEQDI  195 (195)
T ss_pred             HHHHHHHHHHHHcCCCcEEEEeCC-CCHHHHHhhC
Confidence            22223333321   2234677764 6899888764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13975 thymidylate kinase; Provisional

Probab=99.39  E-value=2.3e-12  Score=107.78  Aligned_cols=161  Identities=20%  Similarity=0.220  Sum_probs=86.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-----cccccccCCCCH--------HHHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-----RNGINANLAFSE--------EDRNENVRRAAECAK   88 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-----~~~l~~~~~~~~--------~~~~~~~~~i~~~~~   88 (272)
                      +++|+|.|++||||||+++.|+++|.   ....+.+.|..     ++.+... ....        .++.+.++.+    .
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~---~~~~~~~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i----~   73 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLN---AFWTCEPTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI----E   73 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC---CCeeECCCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH----H
Confidence            47999999999999999999999993   22333444322     1111111 1111        1222222211    1


Q ss_pred             HHHhCCCeEEEcCCCCcH--------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccc
Q psy17388         89 MFAECGFIALCSFVSPTA--------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQ  160 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~~--------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~  160 (272)
                      ..+.. ..||+|......        .....+.........+.++|||++|++++.+|+.+|......  .......+..
T Consensus        74 ~~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~--~~~~~~~~~~  150 (196)
T PRK13975         74 EDLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFE--KKEFLKKVQE  150 (196)
T ss_pred             HHHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccc--hHHHHHHHHH
Confidence            12223 467776321100        001111122111223568999999999999999765310000  0000011111


Q ss_pred             cCC--------CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        161 PYE--------APKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       161 ~ye--------~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .|.        .+....++||+++.++++++++|.+.|..+
T Consensus       151 ~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~  191 (196)
T PRK13975        151 KYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK  191 (196)
T ss_pred             HHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            111        122346899998899999999999999765

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.39  E-value=3.8e-12  Score=106.10  Aligned_cols=154  Identities=17%  Similarity=0.243  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCC-----------------CCHH------
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLA-----------------FSEE------   74 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~-----------------~~~~------   74 (272)
                      .+|.|.||+||||||+|+.|+++|     ++.|+|+..+.+.+.     ...+                 |...      
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~L-----g~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~   79 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKL-----GFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLN   79 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHh-----CCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEEC
Confidence            789999999999999999999999     677888876543221     1111                 1110      


Q ss_pred             -------HHHH--------------HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH
Q psy17388         75 -------DRNE--------------NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE  133 (272)
Q Consensus        75 -------~~~~--------------~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e  133 (272)
                             -+.+              ..+.+.+..+.+.+.+..+|+++-..-       --.+.+   ..+.|||+++++
T Consensus        80 gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiG-------TvV~Pd---A~lKiFLtAS~e  149 (222)
T COG0283          80 GEDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIG-------TVVFPD---AELKIFLTASPE  149 (222)
T ss_pred             CchhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCc-------ceECCC---CCeEEEEeCCHH
Confidence                   0000              011112233444444343444431110       001122   227899999999


Q ss_pred             HHHHhhhhhhhhhhhhcccccc-------ccccccCC----CCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        134 ICEQRDVKGHYKKAREGKIKSF-------TGVSQPYE----APKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       134 ~~~~Rl~~r~~~~~r~~~~~~~-------~~~~~~ye----~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ++.+|..+.+..+......+.+       ...++.-+    .|...-+.|||++++++|++++|++.+.
T Consensus       150 ~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         150 ERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence            9999975543222110001110       11111111    1233348999999999999999999887

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.39  E-value=1.3e-11  Score=101.77  Aligned_cols=159  Identities=16%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc--C-CCCHHHHHHH---------------HHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN--L-AFSEEDRNEN---------------VRRAA   84 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~--~-~~~~~~~~~~---------------~~~i~   84 (272)
                      .+|+|+|+|||||||+++.|+..+...| ...++..+.-+.....+  . ..+.+.....               +....
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDP-RVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCC-cEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            5799999999999999999999874221 12232221111111000  0 0111110000               00011


Q ss_pred             HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC
Q psy17388         85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA  164 (272)
Q Consensus        85 ~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~  164 (272)
                      ..+...+.+|..||.++..   ..+..+++..    ..+.+|||++|.+++.+|+..|....  ...+.........|..
T Consensus        81 ~~i~~~~~~g~~vv~~g~~---~~~~~~~~~~----~~~~~i~l~~~~~~~~~Rl~~R~~~~--~~~~~~rl~~~~~~~~  151 (179)
T TIGR02322        81 AEIDQWLEAGDVVVVNGSR---AVLPEARQRY----PNLLVVNITASPDVLAQRLAARGRES--REEIEERLARSARFAA  151 (179)
T ss_pred             HHHHHHHhcCCEEEEECCH---HHHHHHHHHC----CCcEEEEEECCHHHHHHHHHHcCCCC--HHHHHHHHHHHhhccc
Confidence            1233445677778777542   2333333322    25578999999999999996552100  0000000001111211


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        165 PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       165 ~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       ..+++++.+++.++++++++|.+.+..
T Consensus       152 -~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       152 -APADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             -ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence             245666444567999999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.38  E-value=6.9e-12  Score=104.37  Aligned_cols=153  Identities=16%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHHHHHH---------------
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVR---------------   81 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~~~~~---------------   81 (272)
                      +.+|+|+|+|||||||+++.|+..+   +..  +++.|.......     ....+..++....++               
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~y   76 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQRE---QTQ--LLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYY   76 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccC---CCe--EEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCcc
Confidence            4689999999999999999998876   223  333332211110     111222221110000               


Q ss_pred             HHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc-cc
Q psy17388         82 RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-SQ  160 (272)
Q Consensus        82 ~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~-~~  160 (272)
                      .+...+...++.|..||+++..   .....++   +..+.+..+|||++|.+++.+|+.+|....  ...+.  ..+ +.
T Consensus        77 g~~~~~~~~l~~g~~VI~~G~~---~~~~~~~---~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~--~~~i~--~rl~r~  146 (186)
T PRK10078         77 GVGIEIDLWLHAGFDVLVNGSR---AHLPQAR---ARYQSALLPVCLQVSPEILRQRLENRGREN--ASEIN--ARLARA  146 (186)
T ss_pred             CCcHHHHHHHhCCCEEEEeChH---HHHHHHH---HHcCCCEEEEEEeCCHHHHHHHHHHhCCCC--HHHHH--HHHHHh
Confidence            0011233445678778875431   2223333   333456788999999999999996542100  00010  011 11


Q ss_pred             cCCCCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        161 PYEAPKNPD-LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       161 ~ye~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+.  ..++ ++|+ ++.++++++++|.+.+..
T Consensus       147 ~~~--~~ad~~vi~-~~~s~ee~~~~i~~~l~~  176 (186)
T PRK10078        147 ARY--QPQDCHTLN-NDGSLRQSVDTLLTLLHL  176 (186)
T ss_pred             hhh--ccCCEEEEe-CCCCHHHHHHHHHHHHhh
Confidence            111  1345 6666 457999999999988864

>PRK06217 hypothetical protein; Validated

Probab=99.38  E-value=7.1e-12  Score=104.02  Aligned_cols=103  Identities=18%  Similarity=0.109  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHH-HHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEE-DRNENVRRAAECAKMFAECGFIALCSF  101 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~-~~~~~~~~i~~~~~~~~~~g~~VI~d~  101 (272)
                      +.|+|+|.|||||||+|++|++.+     ++.+++.|.+...-. +..+... .....   ...+...+......|| ++
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l-----~~~~~~~D~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~vi-~G   71 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL-----DIPHLDTDDYFWLPT-DPPFTTKRPPEER---LRLLLEDLRPREGWVL-SG   71 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEcCceeeccC-CCCccccCCHHHH---HHHHHHHHhcCCCEEE-Ec
Confidence            469999999999999999999999     456788887754211 1111111 11111   1122222223333444 43


Q ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388        102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus       102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      ...  ...+.   +....   ..+|||++|.+++.+|+.+|.
T Consensus        72 ~~~--~~~~~---~~~~~---d~~i~Ld~~~~~~~~Rl~~R~  105 (183)
T PRK06217         72 SAL--GWGDP---LEPLF---DLVVFLTIPPELRLERLRLRE  105 (183)
T ss_pred             cHH--HHHHH---HHhhC---CEEEEEECCHHHHHHHHHcCc
Confidence            221  22222   23322   367999999999999998774

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.36  E-value=1.4e-11  Score=109.06  Aligned_cols=149  Identities=15%  Similarity=0.216  Sum_probs=87.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHH-HhCCCeEEE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMF-AECGFIALC   99 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~-~~~g~~VI~   99 (272)
                      .+.+|+|+|++||||||+++.|++.    |  ...+|.-.  .              ..+..+.+.+..- ......|++
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~~----g--~~~~d~~~--~--------------~L~~~l~~~~~~~~~~~~~av~i   62 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALEDL----G--YYCVDNLP--P--------------SLLPKLVELLAQSGGIRKVAVVI   62 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHc----C--CeEECCcC--H--------------HHHHHHHHHHHhcCCCCCeEEEE
Confidence            4468999999999999999999743    3  44454321  0              1111222222110 112346667


Q ss_pred             cCCCC--cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhh--hhcc-ccccccccccCCC-CCCCcEEEe
Q psy17388        100 SFVSP--TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKA--REGK-IKSFTGVSQPYEA-PKNPDLILE  173 (272)
Q Consensus       100 d~~~~--~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~--r~~~-~~~~~~~~~~ye~-~~~~~~~Id  173 (272)
                      |..+.  ....++.+.. ++..|..+.+|||+++.+++.+|+......+.  .... ...+...+..+++ ...++++||
T Consensus        63 D~r~~~~~~~~~~~~~~-L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivID  141 (288)
T PRK05416         63 DVRSRPFFDDLPEALDE-LRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVID  141 (288)
T ss_pred             ccCchhhHHHHHHHHHH-HHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEE
Confidence            76543  1234444444 44458888899999999999999853211000  0000 0011112222222 134789999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy17388        174 TVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~  192 (272)
                      |++.++++++++|.+.+..
T Consensus       142 Ts~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        142 TSELSVHQLRERIRERFGG  160 (288)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999854

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=99.34  E-value=3.4e-11  Score=95.33  Aligned_cols=165  Identities=16%  Similarity=0.191  Sum_probs=104.7

Q ss_pred             hhcC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----cCCCCHH---------------
Q psy17388         16 FKEG-QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFSEE---------------   74 (272)
Q Consensus        16 ~~~~-~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----~~~~~~~---------------   74 (272)
                      ++++ .++++|+++|.+.||||++|.++.....   -++.++-.|.+.+.+..     ..+|..+               
T Consensus        16 ~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a---~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~   92 (205)
T COG3896          16 AMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAA---EPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHP   92 (205)
T ss_pred             HHcCCCCceEEEecCCCccchhHHHHHHHHHhh---cchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeec
Confidence            3344 3679999999999999999999999873   25555655655443321     1111110               


Q ss_pred             --HHHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc
Q psy17388         75 --DRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI  152 (272)
Q Consensus        75 --~~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~  152 (272)
                        --+.........+..+++.|..||.|.+...+.+.-.....+  .|.++..|-+.||.|+..+|..+      +.++.
T Consensus        93 gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l--~g~~v~~VGV~~p~E~~~~Re~r------r~dR~  164 (205)
T COG3896          93 GPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL--EGCRVWMVGVHVPDEEGARRELR------RGDRH  164 (205)
T ss_pred             hhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH--hCCceEEEEeeccHHHHHHHHhh------cCCcC
Confidence              011111222334566788999999887654433332222233  36788889999999999999642      22223


Q ss_pred             cccccc-cccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        153 KSFTGV-SQPYEAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       153 ~~~~~~-~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      .++... ......+...|+.+||+..|+.||+..|.+.++
T Consensus       165 pG~~rg~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         165 PGWNRGSARAVHADAEYDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             cchhhhhHHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence            333221 222334567899999999999999999988765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.33  E-value=9.3e-12  Score=103.14  Aligned_cols=156  Identities=13%  Similarity=0.105  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCC-------------CCHHHHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLA-------------FSEEDRNENVRRAAECAK   88 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~-------------~~~~~~~~~~~~i~~~~~   88 (272)
                      .+|+|.|+|||||||+|+.|++.+     ++.+++.++ ++..+.....             +.+  ....+..+...+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~-----g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~   76 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY-----GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP--LDTVLDLLKDAMV   76 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHH
Confidence            589999999999999999999998     455666644 3332211100             010  0111222222222


Q ss_pred             HHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc-ccc-cccc-------
Q psy17388         89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI-KSF-TGVS-------  159 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~-~~~-~~~~-------  159 (272)
                      .....+..+|+|+.....   .....+......+..+|||++|.+++.+|+.+|.....|.... ..+ ..+.       
T Consensus        77 ~~~~~~~~~i~dg~~~~~---~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~  153 (188)
T TIGR01360        77 AALGTSKGFLIDGYPREV---KQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATE  153 (188)
T ss_pred             cccCcCCeEEEeCCCCCH---HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhH
Confidence            233456677877643222   2222222333446789999999999999997663211111000 001 0111       


Q ss_pred             ---ccCCCCCCCcE-EEeCCCCCHHHHHHHHHHHHH
Q psy17388        160 ---QPYEAPKNPDL-ILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       160 ---~~ye~~~~~~~-~Idt~~~~~ee~~~~I~~~L~  191 (272)
                         ..|..  ...+ .||+ +.+++++.+.|...+.
T Consensus       154 ~~~~~y~~--~~~~~~id~-~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       154 PVIAYYET--KGKLRKINA-EGTVDDVFLQVCTAID  186 (188)
T ss_pred             HHHHHHHh--CCCEEEEEC-CCCHHHHHHHHHHHHh
Confidence               11221  1234 6665 5899999999999885

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14531 adenylate kinase; Provisional

Probab=99.33  E-value=1.5e-11  Score=102.04  Aligned_cols=160  Identities=15%  Similarity=0.128  Sum_probs=87.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHH-------H-HHHHHH-HHHh
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVR-------R-AAECAK-MFAE   92 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~-------~-i~~~~~-~~~~   92 (272)
                      +.|+|+|+|||||||+|+.|++.+     ++.+++. |.++..+.....+..... ..+.       . +..+.. .+.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~-----g~~~is~gd~lr~~~~~~~~~~~~~~-~~~~~G~~v~d~l~~~~~~~~l~~   76 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH-----GLRHLSTGDLLRSEVAAGSALGQEAE-AVMNRGELVSDALVLAIVESQLKA   76 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-----CCCeEecccHHHHHHhcCCHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhh
Confidence            469999999999999999999998     5667776 555554432211111000 0000       0 011111 1221


Q ss_pred             -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCc-eEEEEEeCCHHHHHHhhhhhhhhhhhh----cccccccc----ccccC
Q psy17388         93 -CGFIALCSFVSPTAAARDRAREIHRNANLE-FFEVFVNTPVEICEQRDVKGHYKKARE----GKIKSFTG----VSQPY  162 (272)
Q Consensus        93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~-~~~V~L~~~~e~~~~Rl~~r~~~~~r~----~~~~~~~~----~~~~y  162 (272)
                       .+..+|.|+..........+..++...+.+ ..+++|+||++++.+|+..|.......    .++..+..    +.+.|
T Consensus        77 ~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y  156 (183)
T PRK14531         77 LNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHY  156 (183)
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             233345565544445556666666655544 357999999999999997652211000    00000100    11122


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        163 EAPKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      .. ...-+.||. +.+++++...|.+.|
T Consensus       157 ~~-~~~~~~id~-~~~~~~v~~~i~~~l  182 (183)
T PRK14531        157 RQ-RGLLQSVEA-QGSIEAITERIEKVL  182 (183)
T ss_pred             Hh-cCCEEEEEC-CCCHHHHHHHHHHHh
Confidence            21 111256675 568999999998876

>PRK01184 hypothetical protein; Provisional

Probab=99.32  E-value=3e-11  Score=100.13  Aligned_cols=158  Identities=15%  Similarity=0.143  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-cccccccc-ccCCC-CHHHHH---HHHHH-----HHHHH-HHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGIN-ANLAF-SEEDRN---ENVRR-----AAECA-KMF   90 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~-~~~~~-~~~~~~---~~~~~-----i~~~~-~~~   90 (272)
                      ++|+|+|+|||||||+|+ +++.+   |  +.+++. |.+++.+. .+... ......   .....     +...+ ..+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~---g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i   75 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREM---G--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKI   75 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHc---C--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence            589999999999999998 56666   4  455664 66665432 11111 000000   01111     11111 122


Q ss_pred             Hh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccccc---CCC--
Q psy17388         91 AE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQP---YEA--  164 (272)
Q Consensus        91 ~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~---ye~--  164 (272)
                      .. .+..||.|... .....+.+++.+.   ..+.+|+++||.+++.+|+..|..... ....+.+......   +..  
T Consensus        76 ~~~~~~~vvidg~r-~~~e~~~~~~~~~---~~~~~i~v~~~~~~~~~Rl~~R~~~~d-~~~~~~~~~r~~~q~~~~~~~  150 (184)
T PRK01184         76 REKGDEVVVIDGVR-GDAEVEYFRKEFP---EDFILIAIHAPPEVRFERLKKRGRSDD-PKSWEELEERDERELSWGIGE  150 (184)
T ss_pred             HhcCCCcEEEeCCC-CHHHHHHHHHhCC---cccEEEEEECCHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHHhccCHHH
Confidence            22 34677777653 3344555555442   356889999999999999965521000 0011111111111   111  


Q ss_pred             -CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        165 -PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       165 -~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       ...++++|+++ .++++...+|.+.+..
T Consensus       151 ~~~~ad~vI~N~-~~~~~l~~~v~~~~~~  178 (184)
T PRK01184        151 VIALADYMIVND-STLEEFRARVRKLLER  178 (184)
T ss_pred             HHHhcCEEEeCC-CCHHHHHHHHHHHHHH
Confidence             13578999965 4899999998887763

>KOG3062|consensus

Probab=99.32  E-value=9.1e-12  Score=103.93  Aligned_cols=170  Identities=17%  Similarity=0.293  Sum_probs=109.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-EEEecCccccccccccCCCCHHHHHHHHHH-HHHHHHHHHhCCCeEEEc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIP-AYALDGDNLRNGINANLAFSEEDRNENVRR-AAECAKMFAECGFIALCS  100 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~-~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~-i~~~~~~~~~~g~~VI~d  100 (272)
                      .+|+|||.|.|||||.|+.|.+.|.++|.+ .+++..|.- -++..+..|.+..++..++. +...+..-+..+.+||+|
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D   80 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD   80 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence            479999999999999999999999988844 444433332 22333333333333333332 333344445677899999


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-cccccccccccCCCC------CCCcEEEe
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-KIKSFTGVSQPYEAP------KNPDLILE  173 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-~~~~~~~~~~~ye~~------~~~~~~Id  173 (272)
                      .++....+|.++.+.++..+..+.+||..+|.|.+++....+.... ..+ .-+-++.+-.+||+|      ..|-+.+-
T Consensus        81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~-e~gy~~e~le~L~~RyEeP~s~NRWDsPLf~ll  159 (281)
T KOG3062|consen   81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPG-EDGYDDELLEALVQRYEEPNSRNRWDSPLFTLL  159 (281)
T ss_pred             cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCC-CCCCCHHHHHHHHHHhhCCCccccccCcceEEe
Confidence            9998888999998999988889999999999999999984431100 001 011144456678865      35556664


Q ss_pred             C--CCCCHHHHHHHHHHHHHhCCCCCC
Q psy17388        174 T--VNVPVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       174 t--~~~~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      .  ..++++    .|.+++.+..-+|+
T Consensus       160 ~~~~~~~~~----~I~~al~~nk~~~P  182 (281)
T KOG3062|consen  160 PDVITLPID----DILKALFENKPLPP  182 (281)
T ss_pred             cccCCCcHH----HHHHHHhcCCCCCC
Confidence            4  233444    45555555544553

>PRK13976 thymidylate kinase; Provisional

Probab=99.31  E-value=1e-10  Score=99.05  Aligned_cols=167  Identities=13%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEecC-------ccccccccccCCCCHHHHHH-----HHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQ-G-IPAYALDG-------DNLRNGINANLAFSEEDRNE-----NVRRAAECAK   88 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~-g-~~~~~ld~-------D~i~~~l~~~~~~~~~~~~~-----~~~~i~~~~~   88 (272)
                      ++|+|.|..||||||+++.|++.|... | .++.+...       ..+++.+.....+++....-     ..+.+.+.+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~   80 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL   80 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999875 5 35543321       11222221100122211100     0112233456


Q ss_pred             HHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccc
Q psy17388         89 MFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFT  156 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~  156 (272)
                      ..++.|.+||+|.....            ..+...+...+. ...|.++|||++|++++.+|+.++.+.   ......+.
T Consensus        81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~-~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---~~~~~~l~  156 (209)
T PRK13976         81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVV-DKYPDITFVLDIDIELSLSRADKNGYE---FMDLEFYD  156 (209)
T ss_pred             HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHhcccchh---cccHHHHH
Confidence            66789999999853321            112222222222 235899999999999999998543221   00111223


Q ss_pred             cccccCCCC--CC--CcEEEeCC--CCC---HHHHHHHHHHHHHhC
Q psy17388        157 GVSQPYEAP--KN--PDLILETV--NVP---VEKCANSVLDMIAAK  193 (272)
Q Consensus       157 ~~~~~ye~~--~~--~~~~Idt~--~~~---~ee~~~~I~~~L~~~  193 (272)
                      .++..|...  ..  .-++||.+  +.+   ++++.++|.+.+.+.
T Consensus       157 ~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~  202 (209)
T PRK13976        157 KVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAV  202 (209)
T ss_pred             HHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence            344444421  11  23556653  234   999999999888653

>PRK07933 thymidylate kinase; Validated

Probab=99.29  E-value=3.3e-11  Score=102.43  Aligned_cols=163  Identities=16%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc---------ccccccccc---CCCCH--------HHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD---------NLRNGINAN---LAFSE--------EDRNENVRR   82 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D---------~i~~~l~~~---~~~~~--------~~~~~~~~~   82 (272)
                      ++|+|.|..||||||+++.|++.|..+|+++.++...         .+++.+...   ...+.        .+|.+.   
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~---   77 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGA---   77 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhh---
Confidence            4899999999999999999999999888887765421         112222211   11111        111111   


Q ss_pred             HHHHHHHHHhCCCeEEEcCCCCcH--------------HHHHHHHHHHH---hCCCceEEEEEeCCHHHHHHhhhhhhhh
Q psy17388         83 AAECAKMFAECGFIALCSFVSPTA--------------AARDRAREIHR---NANLEFFEVFVNTPVEICEQRDVKGHYK  145 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~~~~--------------~~r~~~~~~~~---~~g~~~~~V~L~~~~e~~~~Rl~~r~~~  145 (272)
                      + ..+...++.|.+||+|......              ....++..+..   ....|.++|||++|+++..+|+.+|...
T Consensus        78 ~-~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~  156 (213)
T PRK07933         78 R-DELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ  156 (213)
T ss_pred             H-HHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence            1 2234455789899988532211              11223332221   1125889999999999999998765311


Q ss_pred             h-----hhhcc-ccccccccccCCCC-----CCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        146 K-----AREGK-IKSFTGVSQPYEAP-----KNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       146 ~-----~r~~~-~~~~~~~~~~ye~~-----~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      .     .+-.. ...+..+++.|...     ...-++||. +.+++++.++|.+.|
T Consensus       157 ~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida-~~~~e~v~~~i~~~~  211 (213)
T PRK07933        157 DADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDP-DVDPAALAARLAAAL  211 (213)
T ss_pred             cCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCCHHHHHHHHHHHh
Confidence            0     00000 11122334444321     112356665 689999999998776

>PLN02200 adenylate kinase family protein

Probab=99.28  E-value=7.1e-11  Score=101.80  Aligned_cols=162  Identities=18%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHH-----------HHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEE-----------DRNENVRRAAECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~-----------~~~~~~~~i~~~~   87 (272)
                      ..|.+|+|+|+|||||||+|+.|++.+     ++.+++. |.+++.+.........           ........+.   
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-----g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~---  112 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETF-----GFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQ---  112 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHH---
Confidence            357899999999999999999999998     5667776 4455443221110000           0001111111   


Q ss_pred             HHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc------ccccccc---
Q psy17388         88 KMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG------KIKSFTG---  157 (272)
Q Consensus        88 ~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~------~~~~~~~---  157 (272)
                      ..+.. .+..+|.|+.......+..+...+..  .+..+|||++|++++.+|+.+|...+....      ....+..   
T Consensus       113 ~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~  190 (234)
T PLN02200        113 KEMESSDNNKFLIDGFPRTEENRIAFERIIGA--EPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNL  190 (234)
T ss_pred             HHHhcCCCCeEEecCCcccHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            11111 23356777643333333344333321  356789999999999999976632111100      0000110   


Q ss_pred             -ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        158 -VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       158 -~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       +.+.|... .--+.||. +.+++++.+.|.+.+...
T Consensus       191 pv~~~y~~~-~~~~~IDa-~~~~eeV~~~v~~~l~~~  225 (234)
T PLN02200        191 PVIDYYSKK-GKLYTINA-VGTVDEIFEQVRPIFAAC  225 (234)
T ss_pred             HHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHHHc
Confidence             11112221 11256775 469999999999988754

>PRK14530 adenylate kinase; Provisional

Probab=99.28  E-value=6.8e-11  Score=100.63  Aligned_cols=112  Identities=13%  Similarity=0.012  Sum_probs=62.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccC--CCCHHHH-HHHHH--------HHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANL--AFSEEDR-NENVR--------RAAECAKM   89 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~--~~~~~~~-~~~~~--------~i~~~~~~   89 (272)
                      +..|+|.|+|||||||+|+.|++.+     ++.+++.+.+. .....+.  ....... ...+.        ....+...
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~-----~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~   77 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEF-----GVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEE   77 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            3479999999999999999999999     56677765543 3221110  0110000 00110        11122223


Q ss_pred             HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+.....+|+++........+.+....    .+..+|||++|.+++.+|+.+|
T Consensus        78 ~l~~~~~~IldG~pr~~~q~~~l~~~~----~~d~vI~Ld~~~~~l~~Rl~~R  126 (215)
T PRK14530         78 ALSDADGFVLDGYPRNLEQAEYLESIT----DLDVVLYLDVSEEELVDRLTGR  126 (215)
T ss_pred             HHhcCCCEEEcCCCCCHHHHHHHHHhc----CCCEEEEEeCCHHHHHHHHhCC
Confidence            333333455565322223333333221    2447899999999999999766

>COG4639 Predicted kinase [General function prediction only]

Probab=99.27  E-value=3e-11  Score=95.62  Aligned_cols=114  Identities=17%  Similarity=0.243  Sum_probs=85.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC--CCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA--FSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~--~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ..+++++|+|||||||+|+..-.       +.+.++-|.++..+....+  -+.......++.+...++..+..|...|.
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~-------~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tii   74 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFL-------QNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTII   74 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCC-------CcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            36899999999999999996433       5667887888775521110  01011122344445556667788999999


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      |.++..+..|..+.+++..+|+....|+++.|.+.|.+|++.+
T Consensus        75 dAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          75 DATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             EcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence            9998888999999999999999999999999999999998543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.27  E-value=7.5e-11  Score=99.20  Aligned_cols=124  Identities=16%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc--------CCCCHHHHHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN--------LAFSEEDRNENVRRAAECAKM   89 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~--------~~~~~~~~~~~~~~i~~~~~~   89 (272)
                      ...+|.++++.|.|||||||++..+...+.  +.+.+++|.|.++..+..-        .................+...
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   88 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEY   88 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999999999998874  3378899999998765310        011111111111222334566


Q ss_pred             HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      ..+.+..+|++.+.........+.+.+++.|..+.++++.+|++..++|...|.
T Consensus        89 a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   89 AIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             HHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             HHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            678888888887665445555466677889999999999999999999997763

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.25  E-value=2e-11  Score=115.58  Aligned_cols=150  Identities=19%  Similarity=0.208  Sum_probs=85.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c--CCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N--LAFSEEDRNENVRRA-AECAKMFAECGFIALC   99 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~--~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~   99 (272)
                      .|+|+|+|||||||+|+.|++.+     ++.++|.|.+.+.... .  ..|. ...+.+++.+ .++.+.+......||.
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~l-----g~~~id~D~~i~~~~g~~i~~i~~-~~Ge~~fr~~E~~~l~~l~~~~~~Vis   75 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVL-----DLQFIDMDEEIERREGRSVRRIFE-EDGEEYFRLKEKELLRELVERDNVVVA   75 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc-----CCeEEECcHHHHHHcCCCHHHHHH-HhhhHHHHHHHHHHHHHHhhcCCEEEE
Confidence            58999999999999999999999     6777899877653221 0  0111 1223444433 3344555555556665


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh--ccccc-cccccccCCCCCCCcEEEeCCC
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE--GKIKS-FTGVSQPYEAPKNPDLILETVN  176 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~--~~~~~-~~~~~~~ye~~~~~~~~Idt~~  176 (272)
                      ++....  .....++.+++.    .+|||++|++++.+|+.++.+.....  .++.. +...+..|+.    -..||+++
T Consensus        76 ~Gggvv--~~~~~r~~l~~~----~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~----~~~IDt~~  145 (488)
T PRK13951         76 TGGGVV--IDPENRELLKKE----KTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTE----FRGIDTSK  145 (488)
T ss_pred             CCCccc--cChHHHHHHhcC----eEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhc----ccEEECCC
Confidence            543221  111223333332    36999999999999996532100000  01111 1111222332    15899999


Q ss_pred             CCHHHHHHHHHHH
Q psy17388        177 VPVEKCANSVLDM  189 (272)
Q Consensus       177 ~~~ee~~~~I~~~  189 (272)
                      .++++++.+|+-.
T Consensus       146 ~s~~e~~~~iv~~  158 (488)
T PRK13951        146 LNEWETTALVVLE  158 (488)
T ss_pred             CCHHHHHHHHHHH
Confidence            9998877766443

>PRK08356 hypothetical protein; Provisional

Probab=99.23  E-value=2.1e-10  Score=96.14  Aligned_cols=158  Identities=14%  Similarity=0.132  Sum_probs=80.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-Cccccccccc---cCCCCHHH-------------HHHHHHH-
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINA---NLAFSEED-------------RNENVRR-   82 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~---~~~~~~~~-------------~~~~~~~-   82 (272)
                      +.++|+|+|+|||||||+|+.|++ .   |..  +++ +|.++.....   +..|....             ....... 
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~--~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~   77 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFC--RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEK   77 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH-C---CCc--EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHh
Confidence            447899999999999999999963 4   544  333 3333221111   11111000             0000110 


Q ss_pred             -----HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh-hccccccc
Q psy17388         83 -----AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR-EGKIKSFT  156 (272)
Q Consensus        83 -----i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r-~~~~~~~~  156 (272)
                           +...+.........+++|+.. .....+.++.    .+  ..+||+++|.+++.+|+.+|...... ....+.+.
T Consensus        78 yG~~~~~~~~~~~~~~~~~ividG~r-~~~q~~~l~~----~~--~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~  150 (195)
T PRK08356         78 YGEDILIRLAVDKKRNCKNIAIDGVR-SRGEVEAIKR----MG--GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFL  150 (195)
T ss_pred             cCcHHHHHHHHHHhccCCeEEEcCcC-CHHHHHHHHh----cC--CEEEEEECCHHHHHHHHHhcCCccccccccHHHHH
Confidence                 011111112223356667552 2233333322    11  26799999999999999665321100 00111111


Q ss_pred             cc---cc-cCCC---CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        157 GV---SQ-PYEA---PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       157 ~~---~~-~ye~---~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+   .. .|..   ...+|++|++ +.+++++.++|.+.+..
T Consensus       151 ~~~~~~~~l~~~~~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        151 KFDEWEEKLYHTTKLKDKADFVIVN-EGTLEELRKKVEEILRE  192 (195)
T ss_pred             HHHHHHHHhhhhhhHHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence            11   11 1111   2457889877 46999999999888764

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.21  E-value=2.4e-10  Score=97.94  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+.+|.|.|++||||||+|+.|++.+     ++.++|.+.+
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~-----~~~~~~~~~~   38 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKL-----GFHYLDTGAM   38 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCchh
Confidence            45799999999999999999999999     4566777764

>TIGR00017 cmk cytidylate kinase

Probab=99.21  E-value=4e-10  Score=96.03  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +++|.|.|++||||||+++.|++++     +..++|++.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~-----~~~~~~~g~~~   37 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKL-----GYAYLDSGAMY   37 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh-----CCceeeCchHH
Confidence            3689999999999999999999999     55667776553

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK13974 thymidylate kinase; Provisional

Probab=99.21  E-value=6.1e-10  Score=94.63  Aligned_cols=171  Identities=13%  Similarity=0.151  Sum_probs=90.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-----CEEEecC--c-----cccccccccC---CCCHHHHH-----HHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGI-----PAYALDG--D-----NLRNGINANL---AFSEEDRN-----ENV   80 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~-----~~~~ld~--D-----~i~~~l~~~~---~~~~~~~~-----~~~   80 (272)
                      +|.+|+|.|++||||||+++.|++.|...|.     .+.+...  +     .+++.+....   ..++....     ..+
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            5789999999999999999999999976553     2222211  1     1122121110   11111000     011


Q ss_pred             HHHHHHHHHHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh
Q psy17388         81 RRAAECAKMFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR  148 (272)
Q Consensus        81 ~~i~~~~~~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r  148 (272)
                      +.+.......+..|.+||+|.....            ..+...+...+...-.+.++|||+||++++.+|+..|...+..
T Consensus        82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e  161 (212)
T PRK13974         82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIE  161 (212)
T ss_pred             HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchh
Confidence            1222334556678889998753211            1112223222222224778999999999999998654211000


Q ss_pred             hccccccccccccCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        149 EGKIKSFTGVSQPYEAP--KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       149 ~~~~~~~~~~~~~ye~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .............|+..  ...-++||. +.+++++.++|.+.+.+
T Consensus       162 ~~~~~y~~~v~~~y~~y~~~~~~~~Ida-~~~~eeV~~~I~~~l~~  206 (212)
T PRK13974        162 AEGIEFLERVAEGFALIAEERNWKVISA-DQSIETISNEIKETLLN  206 (212)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence            00000011122223211  112246665 57899999999998875

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.20  E-value=1.4e-10  Score=97.29  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC---------------CCHHHH--------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA---------------FSEEDR--------   76 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~---------------~~~~~~--------   76 (272)
                      +.+++|+++|.|||||||+|+.|++++   |+. .++.+|.+++.+....+               +.+...        
T Consensus         1 ~~~~~i~i~G~~G~GKst~a~~l~~~~---~~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~   76 (197)
T PRK12339          1 MESTIHFIGGIPGVGKTSISGYIARHR---AID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYL   76 (197)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhc---CCe-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHH
Confidence            357899999999999999999999998   443 46888887765442111               111000        


Q ss_pred             ---HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhh
Q psy17388         77 ---NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGH  143 (272)
Q Consensus        77 ---~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~  143 (272)
                         ...+..+..++..++.+|..||++........++..    ...+  ...+++.+ ++++..+|+..|.
T Consensus        77 ~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~----~~~~--v~~i~l~v~d~e~lr~Rl~~R~  141 (197)
T PRK12339         77 DQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN----RTNN--IRAFYLYIRDAELHRSRLADRI  141 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH----HhcC--eEEEEEEeCCHHHHHHHHHHHh
Confidence               122334556777888999999999877766655432    2223  34466654 6888889987663

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.19  E-value=3.2e-10  Score=94.46  Aligned_cols=113  Identities=13%  Similarity=0.112  Sum_probs=66.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHHHHH--------HHHHHHHHHHHh---
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRNENV--------RRAAECAKMFAE---   92 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~~---   92 (272)
                      |+|+|+|||||||+|+.|++.+     ++.+++.|.+. +.+.......... ...+        ..+..+....+.   
T Consensus         2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~~l~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~l~~~~   75 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTGDLLREEIASGTELGKKA-KEYIDSGKLVPDEIVIKLLKERLKKPD   75 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-----CCeEEECcHHHHHHHhcCChHHHHH-HHHHHcCCccCHHHHHHHHHHHHhccc
Confidence            8999999999999999999998     67778876653 3222111100000 0000        011222222222   


Q ss_pred             CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      .+..+|.|+........+.+.......+.+.++|+|++|.+++.+|+.+|.
T Consensus        76 ~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~  126 (194)
T cd01428          76 CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR  126 (194)
T ss_pred             ccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            133455554333334445555544433357789999999999999997663

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.18  E-value=6.3e-10  Score=94.68  Aligned_cols=114  Identities=17%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHH-HHHh-
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAK-MFAE-   92 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~-~~~~-   92 (272)
                      .|+|.|+|||||||+|+.|++.+     ++.+++.+++ ++.+..........+ ..+        ..+..+.. .+.+ 
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~dl~r~~~~~~~~~~~~~~-~~~~~g~~~p~~~~~~~i~~~l~~~   75 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHISTGDMLRAAVKAGTELGKEAK-SYMDAGELVPDEIVIGLVKERLAQP   75 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCcEEECCccHHHHHhccchHHHHHH-HHHHcCCcCCHHHHHHHHHHHHhcc
Confidence            58999999999999999999999     5777876544 432221111000000 000        00111121 1222 


Q ss_pred             -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCc-eEEEEEeCCHHHHHHhhhhhh
Q psy17388         93 -CGFIALCSFVSPTAAARDRAREIHRNANLE-FFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~-~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                       .+..+|.|+.-........+.+.+...+.. ..+|+|+||.+++.+|+..|.
T Consensus        76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  128 (215)
T PRK00279         76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR  128 (215)
T ss_pred             CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence             122456665322333444454445555543 378999999999999998764

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.18  E-value=3e-10  Score=96.14  Aligned_cols=42  Identities=24%  Similarity=0.236  Sum_probs=35.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++.+|.|+|++||||||+++.|++.+.  +..+.+++.|.+..
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~   45 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYK   45 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcccc
Confidence            5788999999999999999999999983  34677788887643

>PRK04040 adenylate kinase; Provisional

Probab=99.17  E-value=2.4e-10  Score=95.35  Aligned_cols=163  Identities=14%  Similarity=0.148  Sum_probs=79.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC----------CCHHHHHHHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA----------FSEEDRNENVRRAAECAKMFA   91 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~----------~~~~~~~~~~~~i~~~~~~~~   91 (272)
                      |++|+|+|.|||||||+++.|++.+. .+  +.+++.+.+........+          +......++.+......+...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~--~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~   78 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK-ED--YKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMA   78 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc-cC--CeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhh
Confidence            67999999999999999999999983 12  334554444221111111          111121222222222223332


Q ss_pred             hCCCeEEEcCCC----CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc----ccccccccccc--
Q psy17388         92 ECGFIALCSFVS----PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG----KIKSFTGVSQP--  161 (272)
Q Consensus        92 ~~g~~VI~d~~~----~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~----~~~~~~~~~~~--  161 (272)
                       .+..||.|+-.    +...+...-...++.. .+..+|++.+++++..+|+.+. ..+.|..    .+.........  
T Consensus        79 -~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l-~pd~ii~l~a~p~~i~~Rrl~d-~~R~R~~es~e~I~~~~~~a~~~a  155 (188)
T PRK04040         79 -GEGPVIVDTHATIKTPAGYLPGLPEWVLEEL-NPDVIVLIEADPDEILMRRLRD-ETRRRDVETEEDIEEHQEMNRAAA  155 (188)
T ss_pred             -cCCCEEEeeeeeeccCCCCcCCCCHHHHhhc-CCCEEEEEeCCHHHHHHHHhcc-cccCCCCCCHHHHHHHHHHHHHHH
Confidence             23334444311    0000000011112222 2557899999999998887532 0011110    11111111111  


Q ss_pred             --CC-CCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        162 --YE-APKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       162 --ye-~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                        |. ....+.++|.+....++++++++.+.|
T Consensus       156 ~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        156 MAYAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence              11 123466777665444999999998876

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.17  E-value=1.4e-10  Score=114.02  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=86.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHH-H-----------------
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRN-E-----------------   78 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~-~-----------------   78 (272)
                      .++|.|.|++||||||+|+.|+++|     +..++|++.+.+.+.     .+..+.+.... +                 
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEAL-----GYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLG  516 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHh-----CCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEEC
Confidence            4589999999999999999999999     667799887765442     11222111100 0                 


Q ss_pred             -------------------------HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH
Q psy17388         79 -------------------------NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE  133 (272)
Q Consensus        79 -------------------------~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e  133 (272)
                                               ..+.+....+.+.+.+. ||+++-..       ---.+.+   ..+.|||+++++
T Consensus       517 ~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~-~v~eGRdi-------gtvv~p~---a~~kifl~a~~~  585 (661)
T PRK11860        517 GEDVTDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPG-LVADGRDM-------GTVIFPD---AALKVFLTASAE  585 (661)
T ss_pred             CeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCC-EEEECCCC-------ccEECCC---CCeEEEEECChh
Confidence                                     00111122222322222 23222110       0000111   237899999999


Q ss_pred             HHHHhhhhhhhhhhhhccccc-------cccccc-cCCCC---CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        134 ICEQRDVKGHYKKAREGKIKS-------FTGVSQ-PYEAP---KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       134 ~~~~Rl~~r~~~~~r~~~~~~-------~~~~~~-~ye~~---~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ++.+|+.+.+.++.....++.       -+..+. ++..|   ....++|||++++++|+++.|++.+++
T Consensus       586 ~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        586 ARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence            999998654221111111110       011111 12223   334599999999999999999999976

>PRK12338 hypothetical protein; Provisional

Probab=99.17  E-value=2.7e-10  Score=101.52  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=95.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--cCCC---------CHH----------H-H-
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--NLAF---------SEE----------D-R-   76 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--~~~~---------~~~----------~-~-   76 (272)
                      ++|.+|+++|+|||||||+|++|++++   |+. .++++|.+++.+..  +..+         ...          . . 
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~   77 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTL---NIK-HLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEE   77 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHH
Confidence            467899999999999999999999999   432 24578887764432  1101         000          0 0 


Q ss_pred             ----------HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh
Q psy17388         77 ----------NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK  146 (272)
Q Consensus        77 ----------~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~  146 (272)
                                ...+..+..++..+...|..||++++.-.+......+ ...  ...+..+++..+.+...+|...|....
T Consensus        78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~-~~~--~~~v~~~vl~~dee~h~~Rf~~R~~~~  154 (319)
T PRK12338         78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ-FEE--NASIHFFILSADEEVHKERFVKRAMEI  154 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh-hcc--cCceEEEEEECCHHHHHHHHHHhhhcc
Confidence                      0011122334555567888888887654444433211 111  124445666789999999997764222


Q ss_pred             hhhcc-cccccc---ccccCCC-CCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        147 AREGK-IKSFTG---VSQPYEA-PKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       147 ~r~~~-~~~~~~---~~~~ye~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .|.++ .++|..   +.+.+.. ....++.+ +++.+.+++++++++.+.+.
T Consensus       155 ~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~Vpv-I~N~did~Tv~~ile~I~e~  205 (319)
T PRK12338        155 KRGGKQLEYFRENRIIHDHLVEQAREHNVPV-IKNDDIDCTVKKMLSYIREV  205 (319)
T ss_pred             CCchhhhhChHHHHHHHHHHHHhHhhCCCce-eCCCcHHHHHHHHHHHHHhh
Confidence            23221 222222   2222221 12233433 34679999999999999875

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.15  E-value=7.5e-11  Score=97.94  Aligned_cols=159  Identities=16%  Similarity=0.197  Sum_probs=82.5

Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC--c-----cccccccccCCCCHHHHHHH-----HHHHHHHHHHHHhCC
Q psy17388         27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDG--D-----NLRNGINANLAFSEEDRNEN-----VRRAAECAKMFAECG   94 (272)
Q Consensus        27 l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~--D-----~i~~~l~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~g   94 (272)
                      |.|..||||||+++.|++.|...|+++.....  +     .++..+......+.......     ...+...+...++.|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g   80 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG   80 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999988877333221  1     11221221222222111110     011223445567789


Q ss_pred             CeEEEcCCCCc--------H-HHHHHHHHHHHhCC--CceEEEEEeCCHHHHHHhhhhhhhh-hhhhccccccccccccC
Q psy17388         95 FIALCSFVSPT--------A-AARDRAREIHRNAN--LEFFEVFVNTPVEICEQRDVKGHYK-KAREGKIKSFTGVSQPY  162 (272)
Q Consensus        95 ~~VI~d~~~~~--------~-~~r~~~~~~~~~~g--~~~~~V~L~~~~e~~~~Rl~~r~~~-~~r~~~~~~~~~~~~~y  162 (272)
                      .+||+|.....        . ...+.+..+.....  .|.++|||++|++++.+|+..|... .........+..++..|
T Consensus        81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y  160 (186)
T PF02223_consen   81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAY  160 (186)
T ss_dssp             SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHH
T ss_pred             CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH
Confidence            99999832100        0 01122223322222  5789999999999999999765320 00000001111222223


Q ss_pred             CCC--CCCc-EEEeCCCCCHHHHHHHH
Q psy17388        163 EAP--KNPD-LILETVNVPVEKCANSV  186 (272)
Q Consensus       163 e~~--~~~~-~~Idt~~~~~ee~~~~I  186 (272)
                      ...  ..+. ++||+ +.+++++.++|
T Consensus       161 ~~l~~~~~~~~iid~-~~~~e~v~~~I  186 (186)
T PF02223_consen  161 LELAKDPNNWVIIDA-SRSIEEVHEQI  186 (186)
T ss_dssp             HHHHHTTTTEEEEET-TS-HHHHHHHH
T ss_pred             HHHHcCCCCEEEEEC-CCCHHHHHhhC
Confidence            211  1234 55665 57899998876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK02496 adk adenylate kinase; Provisional

Probab=99.14  E-value=8.4e-10  Score=91.48  Aligned_cols=161  Identities=14%  Similarity=0.149  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHHHHh-
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKMFAE-   92 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~~-   92 (272)
                      +.|+|.|+|||||||+|+.|++.+     ++.+++.+++ +..+.......... ...+        ..+..+....+. 
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~-----~~~~i~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~l~~~l~~   75 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHL-----HIPHISTGDILRQAIKEQTPLGIKA-QGYMDKGELVPDQLVLDLVQERLQQ   75 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-----CCcEEEhHHHHHHHHhccChhHHHH-HHHHHCCCccCHHHHHHHHHHHHhC
Confidence            458999999999999999999998     4556766443 33221111100000 0000        001111221111 


Q ss_pred             --CCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhhhhhc----ccccccc----cccc
Q psy17388         93 --CGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKKAREG----KIKSFTG----VSQP  161 (272)
Q Consensus        93 --~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~----~~~~~~~----~~~~  161 (272)
                        ....+|.|+.-........+...+...+ .+..+|+|++|.+++.+|+..|........    ....+..    +...
T Consensus        76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~  155 (184)
T PRK02496         76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDY  155 (184)
T ss_pred             cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              1223455543222333344444444332 356789999999999999976521100000    0000100    1112


Q ss_pred             CCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        162 YEAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       162 ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      |... .--+.||. +.+++++.++|.+.|.
T Consensus       156 ~~~~-~~~~~Ida-~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        156 YRDR-QKLLTIDG-NQSVEAVTTELKAALA  183 (184)
T ss_pred             HHhc-CCEEEEEC-CCCHHHHHHHHHHHhC
Confidence            2211 11256775 5699999999988763

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.13  E-value=3.3e-10  Score=95.06  Aligned_cols=148  Identities=15%  Similarity=0.098  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-------------------cCC------------C
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-------------------NLA------------F   71 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-------------------~~~------------~   71 (272)
                      ++|.|+|++||||||+++.|++.+     ++.++|.|.+.+.+..                   ..+            |
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf   76 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIF   76 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHh
Confidence            479999999999999999999988     5667888877543210                   001            1


Q ss_pred             CHHHHHHHHHHHH------HHHHHHHhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         72 SEEDRNENVRRAA------ECAKMFAEC--GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        72 ~~~~~~~~~~~i~------~~~~~~~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      .+.....++..+.      .+.+.+...  ...|+++....+..   .+...      -..+|+++||.+++.+|+.+|.
T Consensus        77 ~d~~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~---~~~~~------~D~ii~V~a~~e~r~~Rl~~R~  147 (195)
T PRK14730         77 NDPEERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEA---KLTDL------CSEIWVVDCSPEQQLQRLIKRD  147 (195)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCc---chHhC------CCEEEEEECCHHHHHHHHHHcC
Confidence            1112222222221      112222222  33555543222111   11112      2367999999999999997652


Q ss_pred             -hhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        144 -YKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       144 -~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                       .....   .  ...+..++.   ....++++|+++ .++++..+++.+.+
T Consensus       148 g~s~e~---~--~~ri~~Q~~~~~k~~~aD~vI~N~-g~~e~l~~qv~~~l  192 (195)
T PRK14730        148 GLTEEE---A--EARINAQWPLEEKVKLADVVLDNS-GDLEKLYQQVDQLL  192 (195)
T ss_pred             CCCHHH---H--HHHHHhCCCHHHHHhhCCEEEECC-CCHHHHHHHHHHHH
Confidence             11110   0  011122221   123678999875 48999888887665

>PRK06547 hypothetical protein; Provisional

Probab=99.13  E-value=2.9e-10  Score=93.46  Aligned_cols=112  Identities=17%  Similarity=0.203  Sum_probs=67.2

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHH---H--------
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAE---C--------   86 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~---~--------   86 (272)
                      .+.++.+|.|+|+|||||||+|+.|++.+     ++.+++.|.+......   ... ........+..   .        
T Consensus        11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~~~~~~~~---~~~-~~~~l~~~~l~~g~~~~~~yd~~   81 (172)
T PRK06547         11 CGGGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDDLYPGWHG---LAA-ASEHVAEAVLDEGRPGRWRWDWA   81 (172)
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeecccceeccccc---CCh-HHHHHHHHHHhCCCCceecCCCC
Confidence            35678899999999999999999999998     4556777776543211   110 00000000100   0        


Q ss_pred             ----HH-HHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         87 ----AK-MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        87 ----~~-~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                          .. .....+.+||++++...   +..++.++++.| ..+.|||++|.+++.+|+.+|
T Consensus        82 ~~~~~~~~~l~~~~vVIvEG~~al---~~~~r~~~d~~g-~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         82 NNRPGDWVSVEPGRRLIIEGVGSL---TAANVALASLLG-EVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             CCCCCCcEEeCCCCeEEEEehhhc---cHHHHHHhccCC-CEEEEEEECCHHHHHHHHHhc
Confidence                00 00112345666655443   233455555433 568899999999999999655

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.11  E-value=2.8e-10  Score=95.36  Aligned_cols=149  Identities=13%  Similarity=0.175  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c----------C---------C----------CC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N----------L---------A----------FS   72 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~----------~---------~----------~~   72 (272)
                      .+|.|+|++||||||+++.|++ +     ++.++|.|.+.+.+.. +          .         .          |.
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~   76 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFS   76 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhC
Confidence            5899999999999999999998 6     4667888876443210 0          0         0          22


Q ss_pred             HHHHHHHHHHHH------HHHHHHHhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388         73 EEDRNENVRRAA------ECAKMFAEC--GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-  143 (272)
Q Consensus        73 ~~~~~~~~~~i~------~~~~~~~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-  143 (272)
                      ......++..+.      ++.+.+...  ...||++....+.   ..+...      ...+|+++||++++.+|+.+|. 
T Consensus        77 ~~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e---~~~~~~------~D~vi~V~a~~e~~~~Rl~~R~~  147 (194)
T PRK00081         77 DPEARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFE---NGLEKL------VDRVLVVDAPPETQLERLMARDG  147 (194)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhc---CCchhh------CCeEEEEECCHHHHHHHHHHcCC
Confidence            112222222221      111122222  2456555322211   111112      2377999999999999996652 


Q ss_pred             hhhhhhccccccccccccC---CCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        144 YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +...   ..  ...+..+.   +....++++|+|+ .++++..+++.+.+..
T Consensus       148 ~s~e---~~--~~ri~~Q~~~~~~~~~ad~vI~N~-g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        148 LSEE---EA--EAIIASQMPREEKLARADDVIDNN-GDLEELRKQVERLLQE  193 (194)
T ss_pred             CCHH---HH--HHHHHHhCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHh
Confidence            1110   00  01111111   1123568999985 4899999998887753

>PRK06696 uridine kinase; Validated

Probab=99.11  E-value=7.8e-11  Score=100.87  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=39.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +.+|.+|.|+|+|||||||+|+.|++.|...|..+..+..|++..
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            457889999999999999999999999987777888888887754

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.11  E-value=9.1e-10  Score=94.03  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +|+|.|..||||||+++.|++.+.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~   24 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLG   24 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999983

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK13808 adenylate kinase; Provisional

Probab=99.10  E-value=1.1e-09  Score=98.43  Aligned_cols=164  Identities=13%  Similarity=0.076  Sum_probs=85.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCCCCHH-----------HHHHHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLAFSEE-----------DRNENVRRAAECAKMFA   91 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~~~~~-----------~~~~~~~~i~~~~~~~~   91 (272)
                      -|+|.|+|||||||+|+.|++.+     ++.+++.++ ++..+.........           ..+.....+.+..... 
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~y-----gl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~-   75 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQY-----GIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQP-   75 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-
Confidence            48899999999999999999998     567788654 44333211111000           0011111111111111 


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhh------hhhcc-ccccccccccCC
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKK------AREGK-IKSFTGVSQPYE  163 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~------~r~~~-~~~~~~~~~~ye  163 (272)
                      ....-+|+|+.-......+.+..++...+ .+.++|+|++|++++++|+..|....      .|... .+.+......|.
T Consensus        76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~  155 (333)
T PRK13808         76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYR  155 (333)
T ss_pred             cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHH
Confidence            11223555542222233334444444333 36689999999999999997763210      01110 000100001121


Q ss_pred             C--------CCCC--cEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        164 A--------PKNP--DLILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       164 ~--------~~~~--~~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                      .        +...  -+.||. ..+++++.+.|...|...+
T Consensus       156 ~~t~PLl~~Y~e~~~lv~IDa-~~siEEV~eeI~~~L~~~~  195 (333)
T PRK13808        156 AQTEPLVHYYSEKRKLLTVDG-MMTIDEVTREIGRVLAAVG  195 (333)
T ss_pred             HHhHHHHHHhhccCcEEEEEC-CCCHHHHHHHHHHHHHHHh
Confidence            1        0111  246664 5799999999999998653

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.10  E-value=1.2e-09  Score=95.30  Aligned_cols=143  Identities=19%  Similarity=0.247  Sum_probs=86.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH--hCCCeEEEc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA--ECGFIALCS  100 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~--~~g~~VI~d  100 (272)
                      .+|+++|+|||||||..++|...      +++.+|  ++...+              +..+.+....-.  .....+++|
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lED~------Gy~cvD--NlP~~L--------------l~~l~~~~~~~~~~~~~~Ai~iD   59 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALEDL------GYYCVD--NLPPSL--------------LPQLIELLAQSNSKIEKVAIVID   59 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHHhc------CeeEEc--CCcHHH--------------HHHHHHHHHhcCCCCceEEEEEe
Confidence            58999999999999999999986      566665  332211              111211111100  112344555


Q ss_pred             CCCC-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-----ccccccccCC--CC--CCCcE
Q psy17388        101 FVSP-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-----SFTGVSQPYE--AP--KNPDL  170 (272)
Q Consensus       101 ~~~~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-----~~~~~~~~ye--~~--~~~~~  170 (272)
                      .-+. +..........+++.+..+.++||+|+.+++.+|-.     ..|..+.-     ..+++...-+  .|  ..+++
T Consensus        60 ~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~-----eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~  134 (284)
T PF03668_consen   60 IRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYS-----ETRRRHPLSSDGSLLEAIEKERELLEPLRERADL  134 (284)
T ss_pred             CCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHH-----hccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCE
Confidence            4332 222222222334456889999999999999999974     22322211     0122221111  11  46899


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHh
Q psy17388        171 ILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       171 ~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +|||+++++.+..+.|.+.+..
T Consensus       135 vIDTs~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen  135 VIDTSNLSVHQLRERIRERFGG  156 (284)
T ss_pred             EEECCCCCHHHHHHHHHHHhcc
Confidence            9999999999999999998874

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.10  E-value=4e-10  Score=89.41  Aligned_cols=103  Identities=19%  Similarity=0.165  Sum_probs=57.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS  103 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~  103 (272)
                      +|+|+|+|||||||+|+.|++.+     +..+++.|.+.........-...........+......+...+..|+.....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~   75 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDI   75 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-----CCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeee
Confidence            58999999999999999999999     4556676643221100000000000011112223333454555555533222


Q ss_pred             CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388        104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus       104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+      +  ...   ...+.|||++|++++.+|+.+|
T Consensus        76 ~~------~--~~~---~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          76 GT------V--VFP---DADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             ee------E--EcC---CCCEEEEEECCHHHHHHHHHHH
Confidence            11      0  011   1347799999999999999764

>KOG3347|consensus

Probab=99.10  E-value=3.8e-10  Score=88.74  Aligned_cols=149  Identities=13%  Similarity=0.142  Sum_probs=79.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHH--HHHHHHHHHHHHhCCCeE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNEN--VRRAAECAKMFAECGFIA   97 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~g~~V   97 (272)
                      ..+.|+++|.||+||||+|.+|++.+   |  ..++.. |.+++... -.+|+..-.-..  -+.+...+..++..|.+|
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~---~--~~~i~isd~vkEn~l-~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~I   79 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKT---G--LEYIEISDLVKENNL-YEGYDEEYKCHILDEDKVLDELEPLMIEGGNI   79 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHh---C--CceEehhhHHhhhcc-hhcccccccCccccHHHHHHHHHHHHhcCCcE
Confidence            34579999999999999999999998   4  444443 22222110 011111000000  012223334444556666


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-------cccccccCCCCCCCcE
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-------FTGVSQPYEAPKNPDL  170 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-------~~~~~~~ye~~~~~~~  170 (272)
                      |--....+  .-+++.         .++|.|+||.+++..|+..|.|......+.-.       .+..+..|.    +++
T Consensus        80 VDyHgCd~--Fperwf---------dlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~----~~i  144 (176)
T KOG3347|consen   80 VDYHGCDF--FPERWF---------DLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS----PKI  144 (176)
T ss_pred             EeecccCc--cchhhe---------eEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC----Ccc
Confidence            63222221  012222         26789999999999999988775533322111       111233443    346


Q ss_pred             EEeCCCCCHHHHHHHHHHHH
Q psy17388        171 ILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       171 ~Idt~~~~~ee~~~~I~~~L  190 (272)
                      +..-.+.+.++....|-..+
T Consensus       145 V~eL~s~~~Eem~~ni~ri~  164 (176)
T KOG3347|consen  145 VVELQSETKEEMESNISRIL  164 (176)
T ss_pred             eeecCcCCHHHHHHHHHHHH
Confidence            66555666777666654433

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.09  E-value=7.8e-10  Score=92.32  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +|+|.|.+||||||+++.|++.+
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~   23 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHL   23 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999987

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.08  E-value=2.3e-09  Score=89.29  Aligned_cols=160  Identities=13%  Similarity=0.066  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc---cCCCCHHHHHHHHHH--------------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA---NLAFSEEDRNENVRR--------------   82 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~---~~~~~~~~~~~~~~~--------------   82 (272)
                      .+|++|+|+|+|||||||+++.|.+..+.    +.+.-...-|..-..   +..|..-.+++....              
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~----~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g   77 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPD----FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD   77 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCc----cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence            36789999999999999999999887631    111101111111000   011111111111111              


Q ss_pred             -----HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccc-c
Q psy17388         83 -----AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKS-F  155 (272)
Q Consensus        83 -----i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~-~  155 (272)
                           -.+.+...+++|.+||++. .+  .....++.   ..+...+.||+.+ +.+++.+|+.+|....  ..++.. +
T Consensus        78 ~~YGt~~~~i~~~~~~g~~~i~d~-~~--~g~~~l~~---~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s--~e~i~~Rl  149 (186)
T PRK14737         78 NYYGTPKAFIEDAFKEGRSAIMDI-DV--QGAKIIKE---KFPERIVTIFIEPPSEEEWEERLIHRGTDS--EESIEKRI  149 (186)
T ss_pred             eeecCcHHHHHHHHHcCCeEEEEc-CH--HHHHHHHH---hCCCCeEEEEEECCCHHHHHHHHHhcCCCC--HHHHHHHH
Confidence                 1233555678898888773 22  22233332   2333346799988 4799999986652100  000110 0


Q ss_pred             ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .......+....+|++|+++  +++++.+++.+.|..+
T Consensus       150 ~~~~~e~~~~~~~D~vI~N~--dle~a~~ql~~ii~~~  185 (186)
T PRK14737        150 ENGIIELDEANEFDYKIIND--DLEDAIADLEAIICGK  185 (186)
T ss_pred             HHHHHHHhhhccCCEEEECc--CHHHHHHHHHHHHhcC
Confidence            00011111223578999886  7999999999888654

>PRK14528 adenylate kinase; Provisional

Probab=99.08  E-value=1.6e-09  Score=90.23  Aligned_cols=159  Identities=14%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH--------HHHHHH-HHHHh
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR--------RAAECA-KMFAE   92 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~--------~i~~~~-~~~~~   92 (272)
                      +.|+|.|+|||||||+|+.|++.+     ++.+++.+++ +..+..+..+.... ...+.        .+..+. ..+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~-----~~~~is~~~~lr~~~~~~~~~g~~~-~~~~~~g~lvp~~~~~~~~~~~l~~   75 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL-----SIPQISTGDILREAVKNQTAMGIEA-KRYMDAGDLVPDSVVIGIIKDRIRE   75 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh-----CCCeeeCCHHHHHHhhcCCHHHHHH-HHHHhCCCccCHHHHHHHHHHHHhC
Confidence            358999999999999999999998     4555665554 44332221111000 00000        001111 12222


Q ss_pred             --CCCeEEEcCCCCcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-ccc-----------
Q psy17388         93 --CGFIALCSFVSPTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTG-----------  157 (272)
Q Consensus        93 --~g~~VI~d~~~~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~-----------  157 (272)
                        ....+|.|+.-......+.+..++... ..+..+|+|+||.+++.+|+.+|.....|..+... +..           
T Consensus        76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p  155 (186)
T PRK14528         76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP  155 (186)
T ss_pred             cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence              123355554322223333344444322 23567899999999999999877443333221110 100           


Q ss_pred             ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHH
Q psy17388        158 VSQPYEAPKNPDLILETVNVPVEKCANSVLDM  189 (272)
Q Consensus       158 ~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~  189 (272)
                      +.+.|... .--+.||. +.+++++.+.|...
T Consensus       156 v~~~y~~~-~~~~~i~~-~~~~~~v~~~~~~~  185 (186)
T PRK14528        156 LLDFYAAQ-KKLSQVNG-VGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHHhC-CCEEEEEC-CCCHHHHHHHHHHh
Confidence            11122211 12356664 56899988888764

>TIGR00152 dephospho-CoA kinase

Probab=99.06  E-value=4.2e-10  Score=93.74  Aligned_cols=144  Identities=10%  Similarity=0.126  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c------------------CC-----------CCH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N------------------LA-----------FSE   73 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~------------------~~-----------~~~   73 (272)
                      +|.|+|.+||||||+++.|++..     ++.++|.|.+.+.+.. +                  .+           |..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~   75 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFND   75 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCC
Confidence            48999999999999999999975     4667888877432210 0                  00           221


Q ss_pred             HHHHHHH---------HHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388         74 EDRNENV---------RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-  143 (272)
Q Consensus        74 ~~~~~~~---------~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-  143 (272)
                      ......+         +.+.+......+.|..|+.+....+.   ..+...+      ..+|++++|.+++.+|+.+|. 
T Consensus        76 ~~~~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e---~~~~~~~------D~vv~V~~~~~~~~~Rl~~R~~  146 (188)
T TIGR00152        76 PEELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFE---NKLRSLC------DRVIVVDVSPQLQLERLMQRDN  146 (188)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhh---CCcHHhC------CEEEEEECCHHHHHHHHHHcCC
Confidence            1111111         11222222222344456655322110   1122222      267999999999999997652 


Q ss_pred             hhhhhhcccccccccccc---CCCCCCCcEEEeCCCCCHHHHHHHHH
Q psy17388        144 YKKAREGKIKSFTGVSQP---YEAPKNPDLILETVNVPVEKCANSVL  187 (272)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~---ye~~~~~~~~Idt~~~~~ee~~~~I~  187 (272)
                      ....   .+.  ..+..+   ++....++++|+++ .++++...++.
T Consensus       147 ~s~~---~~~--~r~~~q~~~~~~~~~ad~vI~N~-~~~e~l~~~~~  187 (188)
T TIGR00152       147 LTEE---EVQ--KRLASQMDIEERLARADDVIDNS-ATLADLVKQLE  187 (188)
T ss_pred             CCHH---HHH--HHHHhcCCHHHHHHhCCEEEECC-CCHHHHHHHHh
Confidence            1100   000  001111   11123578999875 58998887764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.06  E-value=1.6e-09  Score=91.22  Aligned_cols=156  Identities=10%  Similarity=0.109  Sum_probs=85.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc----------C------------------CC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN----------L------------------AF   71 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~----------~------------------~~   71 (272)
                      ..|..|.|+|.+||||||+++.|++.+     ++.++|.|.+.+.+...          .                  -|
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~l-----g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF   78 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKL-----NLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIIT   78 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHc-----CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHh
Confidence            456789999999999999999999887     45578888764433110          0                  02


Q ss_pred             CHHHHHHHHHHHH------HHHHHHHhC-CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388         72 SEEDRNENVRRAA------ECAKMFAEC-GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-  143 (272)
Q Consensus        72 ~~~~~~~~~~~i~------~~~~~~~~~-g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-  143 (272)
                      ........+..+.      ++.+.+... ...|+.+..-.+.... .....      -..+|+++||.+++.+|+..|. 
T Consensus        79 ~d~~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~-~~~~~------~D~vi~V~a~~e~ri~Rl~~Rd~  151 (204)
T PRK14733         79 ESKEAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNF-RHYDY------LKKVIVIKADLETRIRRLMERDG  151 (204)
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccC-chhhh------CCEEEEEECCHHHHHHHHHHcCC
Confidence            2222222222221      111222222 2355555422111000 00011      2267999999999999996551 


Q ss_pred             hhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        144 YKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ......     ...+..+..   .-..+|++|++++.+.++.-.++...++.
T Consensus       152 ~s~~~a-----~~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~  198 (204)
T PRK14733        152 KNRQQA-----VAFINLQISDKEREKIADFVIDNTELTDQELESKLITTINE  198 (204)
T ss_pred             CCHHHH-----HHHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHH
Confidence            111110     011222221   12357899999766888888888777664

>PRK08118 topology modulation protein; Reviewed

Probab=99.06  E-value=1.2e-09  Score=89.46  Aligned_cols=98  Identities=18%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS  103 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~  103 (272)
                      -|+|+|+|||||||+|+.|++.+   |.+  +++.|.+...    .++....+.+    .....+.+.+....| +++..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l---~~~--~~~lD~l~~~----~~w~~~~~~~----~~~~~~~~~~~~~wV-idG~~   68 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL---NIP--VHHLDALFWK----PNWEGVPKEE----QITVQNELVKEDEWI-IDGNY   68 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---CCC--ceecchhhcc----cCCcCCCHHH----HHHHHHHHhcCCCEE-EeCCc
Confidence            58999999999999999999999   444  4555544321    1111111111    122233344444444 45433


Q ss_pred             CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388        104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus       104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      +  ...+..   +..   ...+|||++|.+++..|+.+|.
T Consensus        69 ~--~~~~~~---l~~---~d~vi~Ld~p~~~~~~R~~~R~  100 (167)
T PRK08118         69 G--GTMDIR---LNA---ADTIIFLDIPRTICLYRAFKRR  100 (167)
T ss_pred             c--hHHHHH---HHh---CCEEEEEeCCHHHHHHHHHHHH
Confidence            3  222211   222   3478999999999999998774

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.06  E-value=2e-10  Score=94.77  Aligned_cols=156  Identities=14%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc---cCC--C-CHHHHH----------------HH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA---NLA--F-SEEDRN----------------EN   79 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~---~~~--~-~~~~~~----------------~~   79 (272)
                      +.+|+|.|++||||||+++.|++.++......    ....++....   ...  | +.....                .+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~----~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSI----SATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNY   76 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccc----cceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCee
Confidence            46899999999999999999999763211110    1111111000   000  0 000000                01


Q ss_pred             HHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cccc
Q psy17388         80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTGV  158 (272)
Q Consensus        80 ~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~~  158 (272)
                      +......+...+..|.+||++...   ..   ...+.+..+.++.++++.++.+++.+|+.+|.....  ..+.. +...
T Consensus        77 y~~~~~~i~~~~~~g~~vi~d~~~---~~---~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~--~~i~~rl~~~  148 (180)
T TIGR03263        77 YGTPKSPVEEALAAGKDVLLEIDV---QG---ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSE--EVIERRLAKA  148 (180)
T ss_pred             eCCcHHHHHHHHHCCCeEEEECCH---HH---HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCH--HHHHHHHHHH
Confidence            111124456667789888887432   11   122223333334445556778999999866532100  00100 0111


Q ss_pred             cccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        159 SQPYEAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       159 ~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ....+.....+++|+++  ++++..+++.+.+.
T Consensus       149 ~~~~~~~~~~d~~i~n~--~~~~~~~~l~~~~~  179 (180)
T TIGR03263       149 KKEIAHADEFDYVIVND--DLEKAVEELKSIIL  179 (180)
T ss_pred             HHHHhccccCcEEEECC--CHHHHHHHHHHHHh
Confidence            11122233578888874  78999999988775

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.05  E-value=8.6e-10  Score=91.85  Aligned_cols=25  Identities=24%  Similarity=0.569  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++|+|.|+.|+||||+|++|++++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l   28 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHL   28 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHh
Confidence            4789999999999999999999999

>PRK06761 hypothetical protein; Provisional

Probab=99.05  E-value=8.7e-10  Score=97.03  Aligned_cols=118  Identities=14%  Similarity=0.225  Sum_probs=79.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE-ecCccccc-cccccCCCCHHHHHHHHHHHHHHHHHHH----hCCC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNLRN-GINANLAFSEEDRNENVRRAAECAKMFA----ECGF   95 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~-ld~D~i~~-~l~~~~~~~~~~~~~~~~~i~~~~~~~~----~~g~   95 (272)
                      +++|+|+|+|||||||+++.|++.+...|+++.. .+++.... .+.....++..++..++++...+++.+.    ..|.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999766665543 44443222 2333456788888888888877555444    4566


Q ss_pred             eEEEcCCCCcHHHHHHHHH-HHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         96 IALCSFVSPTAAARDRARE-IHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        96 ~VI~d~~~~~~~~r~~~~~-~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+|+.+......+|+.++. .+...  .+..+| ++|.+...+|...|
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~p~e~i~~R~~~r  127 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-ELPFDKNTELITDR  127 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cCCHHHHHHHHHHH
Confidence            6665554444455665553 11111  234477 99999999999655

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.04  E-value=6.8e-09  Score=85.74  Aligned_cols=157  Identities=17%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHH----------HHH-HHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRN----------ENV-RRAAECAKMFA   91 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~----------~~~-~~i~~~~~~~~   91 (272)
                      .|+|.|+|||||||+|+.|++++     ++.++|++++. ........+......          ..+ ..+....... 
T Consensus         2 riiilG~pGaGK~T~A~~La~~~-----~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~-   75 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL-----GLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEA-   75 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-----CCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhh-
Confidence            58999999999999999999998     78899976553 333221111100000          001 1111111111 


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccccccccCCCCCCC-
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFTGVSQPYEAPKNP-  168 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~~~ye~~~~~-  168 (272)
                      +....+|.++.--+....+.+...+...| -...++.++++.+.+..|+..|.-   |..+.+ .+......|..+..| 
T Consensus        76 d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---r~dd~~~~~~~R~~~y~~~~~pl  152 (178)
T COG0563          76 DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---REDDNEETVKKRLKVYHEQTAPL  152 (178)
T ss_pred             cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc---cccCCHHHHHHHHHHHHhcccch
Confidence            22225666654444444555555655544 244678999999999999966521   110000 000011112211111 


Q ss_pred             ----cEEEeCCCCCHHHHHHHHHHHH
Q psy17388        169 ----DLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       169 ----~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                          .+.||. ..+++++.+.+.+.+
T Consensus       153 i~~y~~~id~-~~~i~~v~~~i~~~l  177 (178)
T COG0563         153 IEYYSVTIDG-SGEIEEVLADILKAL  177 (178)
T ss_pred             hhhheeeccC-CCCHHHHHHHHHHhh
Confidence                155664 568999999888765

>PRK07667 uridine kinase; Provisional

Probab=99.03  E-value=3e-09  Score=89.02  Aligned_cols=43  Identities=26%  Similarity=0.344  Sum_probs=37.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+.+|.|+|+|||||||+|+.|++.|...|.++..++.|.+..
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~   58 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV   58 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence            3479999999999999999999999988888888888887643

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.03  E-value=1.3e-09  Score=108.88  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      +++.+|.|.|++||||||+|+.|+++|     ++.|+|++.+.+.+
T Consensus        32 m~~~~i~idG~~gsGKst~~~~la~~l-----~~~~~~~g~~yRa~   72 (863)
T PRK12269         32 MGTVIIALDGPAGSGKSSVCRLLASRL-----GAQCLNTGSFYRAF   72 (863)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHHH
Confidence            344589999999999999999999999     56789988776543

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.02  E-value=5.9e-10  Score=93.62  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c------------cC-----------------CC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A------------NL-----------------AF   71 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~------------~~-----------------~~   71 (272)
                      .++|.++|.+||||||+|+.+++ +     ++..+|.|.+.+.+. +            +.                 -|
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~-----G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf   75 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-L-----GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVF   75 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-c-----CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHc
Confidence            46899999999999999999999 6     566688887644211 0            00                 02


Q ss_pred             CHHHHHHHHHHHHH--------HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         72 SEEDRNENVRRAAE--------CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        72 ~~~~~~~~~~~i~~--------~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      .+.....++..+..        ......+++ .++.+..        .+.+...... -..+|+++||+++..+|+.+|.
T Consensus        76 ~~~~~~~~Le~i~hPli~~~~~~~~~~~~~~-~~~~eip--------lL~e~~~~~~-~d~Vi~V~a~~e~r~eRl~~R~  145 (201)
T COG0237          76 NDPEARLKLEKILHPLIRAEIKVVIDGARSP-YVVLEIP--------LLFEAGGEKY-FDKVIVVYAPPEIRLERLMKRD  145 (201)
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHHHHHHhhCC-ceEEEch--------HHHhcccccc-CCEEEEEECCHHHHHHHHHhcC
Confidence            22222222222211        111222233 4443321        1111100000 1278999999999999997663


Q ss_pred             hhhhhhccccc-cccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        144 YKKAREGKIKS-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       144 ~~~~r~~~~~~-~~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       ...+. .... ...-.+..+....++++++++ .+++...+++.+.+...
T Consensus       146 -~~~~e-~~~~~~~~Q~~~~ek~~~ad~vi~n~-~~i~~l~~~i~~~~~~~  193 (201)
T COG0237         146 -GLDEE-DAEARLASQRDLEEKLALADVVIDND-GSIENLLEQIEKLLKEL  193 (201)
T ss_pred             -CCCHH-HHHHHHHhcCCHHHHHhhcCChhhcC-CCHHHHHHHHHHHHHHH
Confidence             11000 0000 000111122345678999875 57888888887777654

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.02  E-value=4.1e-10  Score=94.84  Aligned_cols=159  Identities=11%  Similarity=0.085  Sum_probs=80.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCC---CHHHHHH---------------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAF---SEEDRNE---------------   78 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~---~~~~~~~---------------   78 (272)
                      .++.+|+|+|++||||||+++.|+..++    .+...-...-++...   .+..+   +......               
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~----~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP----NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG   78 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc----cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC
Confidence            4678999999999999999999999873    111111111111000   00000   0000000               


Q ss_pred             -HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh--hhhcccccc
Q psy17388         79 -NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK--AREGKIKSF  155 (272)
Q Consensus        79 -~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~--~r~~~~~~~  155 (272)
                       .+......+...+..|..||++...   .....++   ...+-.+.++++.++.+++.+|+..|....  .....+.. 
T Consensus        79 ~~y~~~~~~i~~~l~~g~~vi~dl~~---~g~~~l~---~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~-  151 (205)
T PRK00300         79 NYYGTPRSPVEEALAAGKDVLLEIDW---QGARQVK---KKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAK-  151 (205)
T ss_pred             ccccCcHHHHHHHHHcCCeEEEeCCH---HHHHHHH---HhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH-
Confidence             0000122345566788888877422   2222222   222223334444677999999987653110  00000100 


Q ss_pred             ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                        .....+....++++|.++  +++++.+++.+.+...
T Consensus       152 --~~~~~~~~~~~d~vi~n~--~~e~~~~~l~~il~~~  185 (205)
T PRK00300        152 --AREEIAHASEYDYVIVND--DLDTALEELKAIIRAE  185 (205)
T ss_pred             --HHHHHHhHHhCCEEEECC--CHHHHHHHHHHHHHHH
Confidence              111111123456777643  7999999999999876

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.01  E-value=5.7e-09  Score=103.57  Aligned_cols=37  Identities=30%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG   64 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~   64 (272)
                      .+|.|.|+|||||||+|+.|+++|     ++.++|+..+...
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l-----~~~~~~~g~~~r~   38 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYL-----GYAYLDTGAMYRA   38 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-----CCcEeecCcEeHH
Confidence            379999999999999999999999     5667887766543

>TIGR01351 adk adenylate kinases

Probab=99.01  E-value=2.9e-09  Score=90.26  Aligned_cols=111  Identities=14%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCCCCHHHHHHHH--------HHHHHHHH-HHHh--
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLAFSEEDRNENV--------RRAAECAK-MFAE--   92 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~~~~~~~~~~~--------~~i~~~~~-~~~~--   92 (272)
                      |+|.|+|||||||+|+.|++++     ++.+++.++ ++..+.....+..... ..+        ..+..+.. .+.+  
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~gdllr~~~~~~~~~~~~~~-~~~~~g~~vp~~~~~~l~~~~i~~~~   75 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTGDLLRAEIKAGTPLGKKAK-EYMEKGELVPDEIVNQLVKERLTQNQ   75 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc-----CCCeeehhHHHHHhhccccHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCc
Confidence            7899999999999999999998     567777644 4433321111110000 000        00112222 2222  


Q ss_pred             -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         93 -CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                       .+..+|.|+........+.+......  .+..+|+|++|.+++.+|+.+|.
T Consensus        76 ~~~~~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        76 DNENGFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCC
Confidence             13456666532223333444333321  35688999999999999997663

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.99  E-value=6.5e-10  Score=94.03  Aligned_cols=159  Identities=11%  Similarity=0.134  Sum_probs=79.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---ccc--ccCCCCH-HHHHHHH------------
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GIN--ANLAFSE-EDRNENV------------   80 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~--~~~~~~~-~~~~~~~------------   80 (272)
                      +.+|++|+|+|+|||||||+++.|.+..    ..+.+.-...-+.   +-.  .++.|.. +.....+            
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~----~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~   85 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERK----LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVY   85 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcC----CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEc
Confidence            3578999999999999999999998652    1221111111110   000  0111111 1100000            


Q ss_pred             ----HHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEe-CCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388         81 ----RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIKSF  155 (272)
Q Consensus        81 ----~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~~~  155 (272)
                          ..-...+...++.|.+||++...   .....+++.    ....+.||+. .+.+++.+|+.+|...     ....+
T Consensus        86 g~~YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~l~~~----~pd~~~if~~pps~e~l~~Rl~~R~~~-----~~~~~  153 (206)
T PRK14738         86 GNYYGVPKAPVRQALASGRDVIVKVDV---QGAASIKRL----VPEAVFIFLAPPSMDELTRRLELRRTE-----SPEEL  153 (206)
T ss_pred             CceecCCHHHHHHHHHcCCcEEEEcCH---HHHHHHHHh----CCCeEEEEEeCCCHHHHHHHHHHcCCC-----CHHHH
Confidence                00012345566788888876422   233333332    2233344443 4677899998655210     00011


Q ss_pred             -ccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        156 -TGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       156 -~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       .++...|.   .....++++.+++.+++++.++|.+.|.+.
T Consensus       154 ~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        154 ERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             HHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence             11222221   111235555445578999999999999875

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.98  E-value=8.7e-10  Score=90.16  Aligned_cols=161  Identities=13%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------------cCCCEEEecCccccccccccCC--CCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA----------------QGIPAYALDGDNLRNGINANLA--FSEEDRNENVRR   82 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----------------~g~~~~~ld~D~i~~~l~~~~~--~~~~~~~~~~~~   82 (272)
                      +|.+|+|+||||+||||+.++|.+...-                .|.+.++++.+.+.+.+..+.-  +..- ...++..
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~-~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEY-HGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEE-cCCcccC
Confidence            6899999999999999999999988610                0222222332222222211100  0000 0000111


Q ss_pred             HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhcccc-ccccccc
Q psy17388         83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIK-SFTGVSQ  160 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~~  160 (272)
                      -..-+...+..|..||.+---   ..-..+++..   + +++.||+.+| .+.+.+|+.+|......  .+. .+.....
T Consensus        82 ~~~~ve~~~~~G~~vildId~---qGa~qvk~~~---p-~~v~IFi~pPs~eeL~~RL~~Rgtds~e--~I~~Rl~~a~~  152 (191)
T COG0194          82 SREPVEQALAEGKDVILDIDV---QGALQVKKKM---P-NAVSIFILPPSLEELERRLKGRGTDSEE--VIARRLENAKK  152 (191)
T ss_pred             cHHHHHHHHhcCCeEEEEEeh---HHHHHHHHhC---C-CeEEEEEcCCCHHHHHHHHHccCCCCHH--HHHHHHHHHHH
Confidence            122345566788888866311   1122333332   2 6688999885 88888898665311100  000 0111111


Q ss_pred             cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        161 PYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       161 ~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ........+.+|.++  +++.++..+...+...
T Consensus       153 Ei~~~~~fdyvivNd--d~e~a~~~l~~ii~ae  183 (191)
T COG0194         153 EISHADEFDYVIVND--DLEKALEELKSIILAE  183 (191)
T ss_pred             HHHHHHhCCEEEECc--cHHHHHHHHHHHHHHH
Confidence            122223456777765  7888888888877654

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.98  E-value=1.6e-09  Score=91.27  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.|+|.+||||||+++.|++ +     ++.++|.|.+.
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~-----g~~vid~D~i~   35 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-E-----GFLIVDADQVA   35 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeCcHHH
Confidence            4799999999999999999997 4     46678988653

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.97  E-value=1.4e-09  Score=83.59  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=28.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +|+|+|+|||||||+|+.|++.+     ++.+++.|.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL-----GFPVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH-----CCeEEEecce
Confidence            58999999999999999999999     4556666663

...

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.97  E-value=5e-09  Score=86.71  Aligned_cols=40  Identities=25%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|.|+|.|||||||+|+.|++.+...|.++..++.|.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            5899999999999999999999987778888999988875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK07261 topology modulation protein; Provisional

Probab=98.96  E-value=5.6e-09  Score=85.74  Aligned_cols=99  Identities=18%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS  103 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~  103 (272)
                      .|+|+|+|||||||+|+.|++.+   |.+  +++.|.+...    .++...+..+....    +..++..+. .|+|+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~---~~~--~i~~D~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~-wIidg~~   67 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY---NCP--VLHLDTLHFQ----PNWQERDDDDMIAD----ISNFLLKHD-WIIDGNY   67 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCC--eEecCCEEec----cccccCCHHHHHHH----HHHHHhCCC-EEEcCcc
Confidence            58999999999999999999988   444  4555555421    11221122222222    233345555 5666554


Q ss_pred             CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388        104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus       104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      .. .....   .+..+   ..+|||++|..+|..|+.+|.
T Consensus        68 ~~-~~~~~---~l~~a---d~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         68 SW-CLYEE---RMQEA---DQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             hh-hhHHH---HHHHC---CEEEEEcCCHHHHHHHHHHHH
Confidence            31 11121   12222   368999999999999997773

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.96  E-value=2.9e-08  Score=79.28  Aligned_cols=162  Identities=16%  Similarity=0.118  Sum_probs=88.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC---CCCHHHHHH----------H-----HHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL---AFSEEDRNE----------N-----VRR   82 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~---~~~~~~~~~----------~-----~~~   82 (272)
                      ++.+|++.|||||||-|+.......+.... .+.++..-.-|..-....   ..+..+...          |     ...
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence            689999999999999999999999985321 122222111111111101   111111000          0     000


Q ss_pred             HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccC
Q psy17388         83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPY  162 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~y  162 (272)
                      +-..+...+..|..||++...   .....++....    ...+|.++++++++.+|+..|.+..  ..++..-..-...|
T Consensus        83 ip~eId~wl~~G~vvl~NgSR---a~Lp~arrry~----~Llvv~ita~p~VLaqRL~~RGREs--~eeI~aRL~R~a~~  153 (192)
T COG3709          83 IPAEIDLWLAAGDVVLVNGSR---AVLPQARRRYP----QLLVVCITASPEVLAQRLAERGRES--REEILARLARAARY  153 (192)
T ss_pred             CchhHHHHHhCCCEEEEeccH---hhhHHHHHhhh----cceeEEEecCHHHHHHHHHHhccCC--HHHHHHHHHhhccc
Confidence            112344567789888876532   23333333332    4578999999999999997653211  11111100012233


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        163 EAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ..-....+.||++ ..++...++++..|...
T Consensus       154 ~~~~~dv~~idNs-G~l~~ag~~ll~~l~~~  183 (192)
T COG3709         154 TAGPGDVTTIDNS-GELEDAGERLLALLHQD  183 (192)
T ss_pred             ccCCCCeEEEcCC-CcHHHHHHHHHHHHHhh
Confidence            3222334678875 58999999999888743

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.94  E-value=4.4e-09  Score=89.11  Aligned_cols=153  Identities=12%  Similarity=0.156  Sum_probs=81.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--------------------c-----------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--------------------N-----------   68 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--------------------~-----------   68 (272)
                      ..+.+|.|+|.+||||||+++.|.. +     ++.++|.|.+.+.+..                    +           
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~-----g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~   76 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-----GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKR   76 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHH
Confidence            4568899999999999999999997 4     4566777754322210                    0           


Q ss_pred             ---CCCCHHHHHHHHHH---------HHHHHHHHHhCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHH
Q psy17388         69 ---LAFSEEDRNENVRR---------AAECAKMFAECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC  135 (272)
Q Consensus        69 ---~~~~~~~~~~~~~~---------i~~~~~~~~~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~  135 (272)
                         ..|........+..         +..........+ .+|+.+....+..   .+...      ...+|+++||.+++
T Consensus        77 l~~~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~---~~~~~------~d~ii~V~a~~e~~  147 (208)
T PRK14731         77 IAQVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES---GGDAG------LDFIVVVAADTELR  147 (208)
T ss_pred             HHHHHhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec---Cchhc------CCeEEEEECCHHHH
Confidence               00111111111111         111222222333 3555544322111   11111      23679999999999


Q ss_pred             HHhhhhhhhhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        136 EQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       136 ~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+|+.+|...  ....+.  ..+..++.   ....++++|+++ .++++..+++.+.++.
T Consensus       148 ~~Rl~~R~~~--s~e~~~--~Ri~~q~~~~~~~~~ad~vI~N~-g~~e~l~~~i~~~~~~  202 (208)
T PRK14731        148 LERAVQRGMG--SREEIR--RRIAAQWPQEKLIERADYVIYNN-GTLDELKAQTEQLYQV  202 (208)
T ss_pred             HHHHHHcCCC--CHHHHH--HHHHHcCChHHHHHhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence            9999776211  000000  01111111   113468899875 5899999998877754

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.94  E-value=5.7e-09  Score=90.25  Aligned_cols=153  Identities=18%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-cc-----------------------------CCCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-AN-----------------------------LAFS   72 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~-----------------------------~~~~   72 (272)
                      .+|.|+|.+||||||+++.|.+.+     ++.++|.|.+.+.+. .+                             .-|.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~   76 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFS   76 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhC
Confidence            479999999999999999999876     466688887643221 00                             0022


Q ss_pred             HHHHHHHHHHHH------HHHHHHH------------hCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH
Q psy17388         73 EEDRNENVRRAA------ECAKMFA------------ECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE  133 (272)
Q Consensus        73 ~~~~~~~~~~i~------~~~~~~~------------~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e  133 (272)
                      +......+..+.      ++.+.+.            ..+ ..||.+..-.+...  .....      ...+|+++||.+
T Consensus        77 d~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~--~~~~~------~D~iv~V~a~~e  148 (244)
T PTZ00451         77 DAQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETK--TFTYF------VSASVVVSCSEE  148 (244)
T ss_pred             CHHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccC--chhhc------CCeEEEEECCHH
Confidence            222222222221      1111111            122 36666643221110  00011      237899999999


Q ss_pred             HHHHhhhhhh-hhhhhhccccccccccccC---CCCCCCcEEEeCCC-CCHHHHHHHHHHHHHhC
Q psy17388        134 ICEQRDVKGH-YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVN-VPVEKCANSVLDMIAAK  193 (272)
Q Consensus       134 ~~~~Rl~~r~-~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~-~~~ee~~~~I~~~L~~~  193 (272)
                      ++.+|+.+|. ....   +..  ..+..+.   +.-..+|++|++++ .++++..++|.+.+...
T Consensus       149 ~ri~RL~~R~g~s~e---ea~--~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~  208 (244)
T PTZ00451        149 RQIERLRKRNGFSKE---EAL--QRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWM  208 (244)
T ss_pred             HHHHHHHHcCCCCHH---HHH--HHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999997652 1100   000  0111111   11235789998752 58999999998877653

>PLN02422 dephospho-CoA kinase

Probab=98.93  E-value=4.6e-09  Score=90.07  Aligned_cols=149  Identities=11%  Similarity=0.109  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--------------------c----------CCCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--------------------N----------LAFS   72 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--------------------~----------~~~~   72 (272)
                      .+|.++|.+||||||+++.|++ +     ++.++|.|.+.+.+..                    +          .-|.
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~-----g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~   75 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-S-----GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFS   75 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhC
Confidence            3799999999999999999994 4     5667888876432210                    0          0122


Q ss_pred             HHHHHHHHHHHH------HHHHHHH---hCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         73 EEDRNENVRRAA------ECAKMFA---ECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        73 ~~~~~~~~~~i~------~~~~~~~---~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +......+..+.      ++.+...   ..+ ..|+.+..-.+..   .+...      -..+|+++||.+++.+|+.+|
T Consensus        76 d~~~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---~~~~~------~D~vI~V~a~~e~ri~RL~~R  146 (232)
T PLN02422         76 DPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---KMDKW------TKPVVVVWVDPETQLERLMAR  146 (232)
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---chhhh------CCEEEEEECCHHHHHHHHHHc
Confidence            222222222221      1111111   122 3565554322111   11111      237799999999999999765


Q ss_pred             h-hhhhhhccccccccccccC---CCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        143 H-YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       143 ~-~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      . ....   +..  ..+..++   +.-..++++|+|+ .+.++...++.+.++.
T Consensus       147 ~g~s~e---ea~--~Ri~~Q~~~eek~~~AD~VI~N~-gs~e~L~~qv~~ll~~  194 (232)
T PLN02422        147 DGLSEE---QAR--NRINAQMPLDWKRSKADIVIDNS-GSLEDLKQQFQKVLEK  194 (232)
T ss_pred             CCCCHH---HHH--HHHHHcCChhHHHhhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence            2 1110   000  0112221   1124578999986 4899888888877754

>PTZ00301 uridine kinase; Provisional

Probab=98.93  E-value=3.3e-08  Score=83.76  Aligned_cols=43  Identities=30%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCC-EEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-GIP-AYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~-~~~ld~D~i~~   63 (272)
                      +-.+|.|.|+|||||||+|+.|.+.+... |.. +..+..|.+..
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            34789999999999999999999887432 222 44566666644

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.91  E-value=1.7e-08  Score=85.07  Aligned_cols=113  Identities=15%  Similarity=0.215  Sum_probs=66.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-------ccCCCCHHH---HHHHHHHHHHHH--
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-------ANLAFSEED---RNENVRRAAECA--   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-------~~~~~~~~~---~~~~~~~i~~~~--   87 (272)
                      .++.+|.|.|+|||||||+|+.|.+.|+.  ..+..+..|++.....       ....|+...   ....++.+..+.  
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g   83 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG   83 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence            34589999999999999999999999942  2455666666654221       112222211   111112221100  


Q ss_pred             -----------HH-------HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         88 -----------KM-------FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        88 -----------~~-------~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                                 ..       ......+||+.++..+..  +.++++++      +.||+++|.+++..|.-+|
T Consensus        84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d------~kIfvdtd~D~RliRri~R  148 (218)
T COG0572          84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMD------LKIFVDTDADVRLIRRIKR  148 (218)
T ss_pred             CcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcC------EEEEEeCCccHHHHHHHHH
Confidence                       00       001123666776665432  45666654      7899999999998887665

>PLN02674 adenylate kinase

Probab=98.91  E-value=2e-08  Score=86.72  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=67.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH--------HHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR--------RAAECAKMF   90 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~~   90 (272)
                      .+++.|+|.|+|||||||+|+.|++.+     ++.+++.+++ +..+..+..+.... ...+.        .+..+....
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~-----~~~his~GdllR~~i~~~s~~g~~i-~~~~~~G~lvpd~iv~~lv~~~  102 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKA-KEAMDKGELVSDDLVVGIIDEA  102 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEchhHHHHHHHhccChhhHHH-HHHHHcCCccCHHHHHHHHHHH
Confidence            445779999999999999999999998     6778886554 43332211111100 00000        011222222


Q ss_pred             H-h--CCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388         91 A-E--CGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        91 ~-~--~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      + +  .+..+|.|+.-........+..++...| ....+|+|++|.+++.+|+..|
T Consensus       103 l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR  158 (244)
T PLN02674        103 MKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR  158 (244)
T ss_pred             HhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence            2 1  2234566643223333444444444333 2446899999999999999766

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.91  E-value=2.7e-08  Score=84.70  Aligned_cols=121  Identities=14%  Similarity=0.220  Sum_probs=76.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc---C-CCCHH--HHHHHHHH-----HHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN---L-AFSEE--DRNENVRR-----AAECAK   88 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~---~-~~~~~--~~~~~~~~-----i~~~~~   88 (272)
                      ..+.+|++.|+||.|||++|+.|.+.|.=.|+++-.++..+.|+.....   . .|++.  ......++     +.++..
T Consensus        10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~   89 (222)
T PF01591_consen   10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIE   89 (222)
T ss_dssp             ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999998888888888877776644322   1 12221  11112222     233445


Q ss_pred             HHH-hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh
Q psy17388         89 MFA-ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV  140 (272)
Q Consensus        89 ~~~-~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~  140 (272)
                      .+. +.|.+-|.|+++.....|..+.+.+...+..++.|-.-|+.+.+.++.-
T Consensus        90 ~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI  142 (222)
T PF01591_consen   90 WLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNI  142 (222)
T ss_dssp             HHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHH
T ss_pred             HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHH
Confidence            555 4678999999999999999999999998877766666677777666653

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.89  E-value=1.6e-08  Score=84.77  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|.|+|++||||||+++.|...+  .+..+.+++.|.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence            58899999999999999999988  244677788887654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.89  E-value=2.1e-09  Score=83.07  Aligned_cols=22  Identities=32%  Similarity=0.604  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L   46 (272)
                      |+|+|.|||||||+|+.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999996

...

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.87  E-value=1.6e-08  Score=86.84  Aligned_cols=113  Identities=12%  Similarity=0.044  Sum_probs=63.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHH-----------HHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEE-----------DRNENVRRAAECAK   88 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~-----------~~~~~~~~i~~~~~   88 (272)
                      .|+.|+|.|+|||||||+|+.|++.+     ++.+++.+.+.. ...........           ........+.+...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~   79 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIA   79 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            34569999999999999999999999     577788776543 22211000000           00111111122122


Q ss_pred             HH-HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         89 MF-AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        89 ~~-~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+ ...+..+|.|+.-........+..    .+-+..+|+|++|.+++.+|+..|
T Consensus        80 ~~~~~~~~g~iLDGfPRt~~Qa~~l~~----~~~~~~vi~l~~~~~~~~~Rl~~R  130 (229)
T PTZ00088         80 KVTDDCFKGFILDGFPRNLKQCKELGK----ITNIDLFVNIYLPRNILIKKLLGR  130 (229)
T ss_pred             hhccccCceEEEecCCCCHHHHHHHHh----cCCCCEEEEEeCCHHHHHHHHHcC
Confidence            21 122345666653222222333222    233567899999999999999765

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.87  E-value=1.5e-09  Score=90.87  Aligned_cols=39  Identities=31%  Similarity=0.487  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCC----EEEecCcccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIP----AYALDGDNLR   62 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~----~~~ld~D~i~   62 (272)
                      +|.|+|+|||||||+|++|+..|...|.+    ..++..|.+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            68999999999999999999999776666    4555555543

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR00235 udk uridine kinase

Probab=98.87  E-value=5.2e-08  Score=82.37  Aligned_cols=40  Identities=28%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.+|.|+|++||||||+++.|...+..  .++.++..|.+
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~   43 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY   43 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence            56789999999999999999999998842  23556666654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.87  E-value=7.8e-09  Score=85.98  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|.|+|.|||||||+|+.|++.+.    ++.+++.|.+..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccC
Confidence            588999999999999999999983    456677776644

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.84  E-value=3e-08  Score=84.89  Aligned_cols=144  Identities=18%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHH--HhCCCeEEEc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMF--AECGFIALCS  100 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~--~~~g~~VI~d  100 (272)
                      .+|+++|.||||||+..+.|...      +.+.+|  ++-..+              +-.+.+++...  ......|++|
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lEDl------GyycvD--NLPp~L--------------lp~~~~~~~~~~~~~~kvAv~iD   59 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLEDL------GYYCVD--NLPPQL--------------LPKLADLMLTLESRITKVAVVID   59 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHHhc------Ceeeec--CCCHHH--------------HHHHHHHHhhcccCCceEEEEEe
Confidence            47999999999999999999875      455555  333211              11122222111  1122345555


Q ss_pred             CCC-CcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-----ccccccc--CCCC--CCCc
Q psy17388        101 FVS-PTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-----FTGVSQP--YEAP--KNPD  169 (272)
Q Consensus       101 ~~~-~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-----~~~~~~~--ye~~--~~~~  169 (272)
                      .-+ .+......+..-+++. ++.+.++||+++.+++.+|-.     ..|..+.-.     ..++...  +-.|  +.++
T Consensus        60 iRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~-----etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~  134 (286)
T COG1660          60 VRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYS-----ETRRSHPLSEDGLLLEAIAKERELLAPLREIAD  134 (286)
T ss_pred             cccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHh-----hhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhh
Confidence            322 2223334444445555 356888999999999999964     233222111     1222222  1123  4678


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        170 LILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       170 ~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ++|||+++++.+..+.|...+...
T Consensus       135 ~vIDTs~ls~~~Lr~~i~~~f~~~  158 (286)
T COG1660         135 LVIDTSELSVHELRERIRTRFLGK  158 (286)
T ss_pred             hEeecccCCHHHHHHHHHHHHccC
Confidence            999999999999999999999853

>PRK14526 adenylate kinase; Provisional

Probab=98.84  E-value=6.6e-08  Score=82.05  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=58.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH-------H-HHHHHHH-HHh-
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR-------R-AAECAKM-FAE-   92 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~-------~-i~~~~~~-~~~-   92 (272)
                      .|+|.|+|||||||+|+.|++.+     ++.+++.+.+ ++.+.......... ...+.       . +..+... +.. 
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~-----~~~~is~G~llr~~~~~~t~~g~~i-~~~~~~g~lvpd~~~~~lv~~~l~~~   75 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNEL-----NYYHISTGDLFRENILNSTPLGKEI-KQIVENGQLVPDSITIKIVEDKINTI   75 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh-----CCceeecChHHHHhcccCChhhHHH-HHHHHcCccCChHHHHHHHHHHHhcc
Confidence            47899999999999999999998     5666765544 44332211111000 00000       0 0111111 111 


Q ss_pred             -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         93 -CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                       ....+|.|+.--.....+.+.....    .+.+|++++|.+++.+|+..|.
T Consensus        76 ~~~~g~ilDGfPR~~~Qa~~l~~~~~----~~~vi~l~~~~~~~~~Rl~~R~  123 (211)
T PRK14526         76 KNNDNFILDGFPRNINQAKALDKFLP----NIKIINFLIDEELLIKRLSGRR  123 (211)
T ss_pred             cccCcEEEECCCCCHHHHHHHHHhcC----CCEEEEEECCHHHHHHHHHCCC
Confidence             1233455633222222233322221    2356889999999999997763

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.82  E-value=2.4e-08  Score=83.76  Aligned_cols=146  Identities=17%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-cc----------C-------------------CCCH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-AN----------L-------------------AFSE   73 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~----------~-------------------~~~~   73 (272)
                      +|.|+|.+||||||+++.|++ +     ++.++|.|.+.+.+. .+          .                   -|..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~   74 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-L-----GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFND   74 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-C-----CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCC
Confidence            478999999999999999975 3     466788887643221 00          0                   0221


Q ss_pred             HHHHHHHHHH---------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388         74 EDRNENVRRA---------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-  143 (272)
Q Consensus        74 ~~~~~~~~~i---------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-  143 (272)
                      ......+..+         ....... ..+..||.+....+..   .+...+      ..+||++||.+++.+|+.+|. 
T Consensus        75 ~~~~~~L~~i~hP~v~~~~~~~~~~~-~~~~~vi~e~pLL~E~---~~~~~~------D~vi~V~a~~e~r~~RL~~R~g  144 (196)
T PRK14732         75 EEKLKALNELIHPLVRKDFQKILQTT-AEGKLVIWEVPLLFET---DAYTLC------DATVTVDSDPEESILRTISRDG  144 (196)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH-hcCCcEEEEeeeeeEc---CchhhC------CEEEEEECCHHHHHHHHHHcCC
Confidence            1111222222         1111111 2334555543222111   111122      378999999999999997662 


Q ss_pred             hhhhhhccccccccccccC---CCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        144 YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ....   ..  ...+..+.   +.-..++++|++++ ++++...++.+.++
T Consensus       145 ~s~e---~a--~~ri~~Q~~~~~k~~~aD~vI~N~~-~~~~l~~~v~~l~~  189 (196)
T PRK14732        145 MKKE---DV--LARIASQLPITEKLKRADYIVRNDG-NREGLKEECKILYS  189 (196)
T ss_pred             CCHH---HH--HHHHHHcCCHHHHHHhCCEEEECCC-CHHHHHHHHHHHHH
Confidence            1110   00  00111111   11135789999864 88888887776654

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.82  E-value=3.2e-08  Score=81.99  Aligned_cols=158  Identities=14%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---cccccCCCCHHHHHHHHHHH--------------
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GINANLAFSEEDRNENVRRA--------------   83 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~~~~~~~~~~~~~~~~~i--------------   83 (272)
                      ++++|+|+|++||||||+++.|.+.++.   .+...-...-|.   +-..+..|....+.+.-+.+              
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~---~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~   77 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPD---KFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGN   77 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTT---TEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhccc---ccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecch
Confidence            4678999999999999999999998742   121111111111   11111111111111111110              


Q ss_pred             -----HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhcccc-ccc
Q psy17388         84 -----AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIK-SFT  156 (272)
Q Consensus        84 -----~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~-~~~  156 (272)
                           ...+....+.|.++|++.. +  .....+    +..+...+.||+.++ .+.+.+|+.+|......  .+. ...
T Consensus        78 ~YGt~~~~i~~~~~~gk~~il~~~-~--~g~~~L----~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~--~i~~r~~  148 (183)
T PF00625_consen   78 YYGTSKSAIDKVLEEGKHCILDVD-P--EGVKQL----KKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEE--EIEERLE  148 (183)
T ss_dssp             EEEEEHHHHHHHHHTTTEEEEEET-H--HHHHHH----HHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHH--HHHHHHH
T ss_pred             hhhhccchhhHhhhcCCcEEEEcc-H--HHHHHH----HhcccCceEEEEEccchHHHHHHHhccccccHH--HHHHHHH
Confidence                 1334556678888887632 2  222222    233567788999765 78888887554321110  110 111


Q ss_pred             cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .....+......+.+|.++  ++++++.+|.+.|++
T Consensus       149 ~~~~~~~~~~~fd~vi~n~--~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  149 RAEKEFEHYNEFDYVIVND--DLEEAVKELKEIIEQ  182 (183)
T ss_dssp             HHHHHHGGGGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHhhcCCEEEECc--CHHHHHHHHHHHHHh
Confidence            1222233222256788754  799999999999875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.79  E-value=9.1e-09  Score=85.07  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|.|+|.+||||||+++.|++ +     ++.++|.|.+.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~   34 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKIAH   34 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHHHH
Confidence            489999999999999999998 5     455677777644

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.79  E-value=2.4e-08  Score=92.50  Aligned_cols=149  Identities=17%  Similarity=0.227  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c----------C-------------------CCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N----------L-------------------AFS   72 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~----------~-------------------~~~   72 (272)
                      ..|.|+|.+||||||+++.|++ +     ++.++|.|.+.+.+.. +          .                   .|.
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~-----G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~   75 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-L-----GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFA   75 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhC
Confidence            3699999999999999999997 5     5667888876443210 0          0                   122


Q ss_pred             HHHHHHHHHHHH------HHHHHHHh--CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh-h
Q psy17388         73 EEDRNENVRRAA------ECAKMFAE--CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG-H  143 (272)
Q Consensus        73 ~~~~~~~~~~i~------~~~~~~~~--~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r-~  143 (272)
                      .......+..+.      .+.+.+..  .+.+|+.+....+..   .+...+      ..+|||+||.+++.+|+..| .
T Consensus        76 ~~~~~~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~---~~~~~~------D~iI~V~ap~e~ri~Rl~~rRg  146 (395)
T PRK03333         76 DDEARAVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES---GMAPLF------HLVVVVDADVEVRVRRLVEQRG  146 (395)
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC---CchhhC------CEEEEEECCHHHHHHHHHhcCC
Confidence            222222222211      11111112  233444432221111   111122      36799999999999999653 1


Q ss_pred             hhhhhhcccccccccccc--CCC-CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        144 YKKAREGKIKSFTGVSQP--YEA-PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~--ye~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ......     ...+..+  ++. -..++++|+++ .++++...++.+.++.
T Consensus       147 ~s~~~a-----~~ri~~Q~~~e~k~~~AD~vIdN~-~s~e~l~~~v~~~l~~  192 (395)
T PRK03333        147 MAEADA-----RARIAAQASDEQRRAVADVWLDNS-GTPDELVEAVRALWAD  192 (395)
T ss_pred             CCHHHH-----HHHHHhcCChHHHHHhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence            111100     0011111  111 13568999964 5888888888877654

>KOG3079|consensus

Probab=98.78  E-value=1.2e-07  Score=77.37  Aligned_cols=163  Identities=16%  Similarity=0.115  Sum_probs=88.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccc-cCCCCHHHHHHHHH--------HHHHHH-H
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINA-NLAFSEEDRNENVR--------RAAECA-K   88 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~-~~~~~~~~~~~~~~--------~i~~~~-~   88 (272)
                      .++.+||+.|.|||||-|.+..+.+++     ++.+++..+ +|..... +-.+...- .+.+.        -...+. .
T Consensus         6 ~~~~IifVlGGPGsgKgTqC~kiv~ky-----~ftHlSaGdLLR~E~~~~gse~g~~I-~~~i~~G~iVP~ei~~~LL~~   79 (195)
T KOG3079|consen    6 DKPPIIFVLGGPGSGKGTQCEKIVEKY-----GFTHLSAGDLLRAEIASAGSERGALI-KEIIKNGDLVPVEITLSLLEE   79 (195)
T ss_pred             cCCCEEEEEcCCCCCcchHHHHHHHHc-----CceeecHHHHHHHHHccccChHHHHH-HHHHHcCCcCcHHHHHHHHHH
Confidence            467899999999999999999999998     677888654 4443322 11111100 00000        001111 2


Q ss_pred             HHHhCC--CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--------ccc-
Q psy17388         89 MFAECG--FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--------FTG-  157 (272)
Q Consensus        89 ~~~~~g--~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--------~~~-  157 (272)
                      .+.+.+  ...++|+.--.......+.....  +.+-+++|++|+.+++.+|+.+|.....|..+...        +.. 
T Consensus        80 am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~--~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~  157 (195)
T KOG3079|consen   80 AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ--GDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKS  157 (195)
T ss_pred             HHHhcCCCCeEEecCCCCChHHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHc
Confidence            233332  12666643222233333333332  13568999999999999999887544223322111        000 


Q ss_pred             ---ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        158 ---VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       158 ---~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                         +...|+.-. --..|+. +.+++++...+...+..
T Consensus       158 t~Pvi~~~e~kg-~l~~i~a-~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  158 TLPVIEYYEKKG-KLLKINA-ERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             chHHHHHHHccC-cEEEecC-CCCHHHHHHHHHHHhhc
Confidence               111222211 1235654 57899999998887753

>smart00072 GuKc Guanylate kinase homologues

Probab=98.78  E-value=9.4e-08  Score=79.32  Aligned_cols=160  Identities=16%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-CccccccccccCCCCHHHHHHHHHH------------------
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVRR------------------   82 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~~~~~~~~~~~~~~~~------------------   82 (272)
                      +++|+|+|+|||||+|+++.|.+..+. ++...... +...+.+-..+..|....+.+..+.                  
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~-~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG   80 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPD-AFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG   80 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCc-ceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence            468999999999999999999988521 11111111 1112221111111110011111000                  


Q ss_pred             -HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEe-CCHHHHHHhhhhhhhhhhhhcccc-cccccc
Q psy17388         83 -AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIK-SFTGVS  159 (272)
Q Consensus        83 -i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~  159 (272)
                       -...+....+.|.++|.+.. +  .....++..    ....++||+. .+.+++.+|+.+|.....  ..+. .+....
T Consensus        81 t~~~~i~~~~~~~~~~ild~~-~--~~~~~l~~~----~~~~~vIfi~~~s~~~l~~rl~~R~~~~~--~~i~~rl~~a~  151 (184)
T smart00072       81 TSKETIRQVAEQGKHCLLDID-P--QGVKQLRKA----QLYPIVIFIAPPSSEELERRLRGRGTETA--ERIQKRLAAAQ  151 (184)
T ss_pred             cCHHHHHHHHHcCCeEEEEEC-H--HHHHHHHHh----CCCcEEEEEeCcCHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence             11234455567888887743 2  222333322    2344689997 667889999965521100  0000 011111


Q ss_pred             ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        160 QPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       160 ~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .....+...+.+|+++  +++++.+++.+.|.+.
T Consensus       152 ~~~~~~~~fd~~I~n~--~l~~~~~~l~~~i~~~  183 (184)
T smart00072      152 KEAQEYHLFDYVIVND--DLEDAYEELKEILEAE  183 (184)
T ss_pred             HHHhhhccCCEEEECc--CHHHHHHHHHHHHHhc
Confidence            1111123467888875  7999999999988753

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK14529 adenylate kinase; Provisional

Probab=98.77  E-value=1.4e-07  Score=80.64  Aligned_cols=113  Identities=12%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-CccccccccccCCCCHHHHHHHHH--------HHHHHH-HHHHhC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVR--------RAAECA-KMFAEC   93 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~~~~~~~~~~~~~~~--------~i~~~~-~~~~~~   93 (272)
                      .|+|.|+|||||||+|+.|++.+     ++.+++ +|.+++....+..+....+ ..+.        .+..+. ..+.+.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~-----~~~~is~gdllr~~i~~~t~lg~~i~-~~i~~G~lvpdei~~~lv~~~l~~~   75 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKY-----DLAHIESGAIFREHIGGGTELGKKAK-EYIDRGDLVPDDITIPMILETLKQD   75 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----CCCCcccchhhhhhccCCChHHHHHH-HHHhccCcchHHHHHHHHHHHHhcc
Confidence            48999999999999999999999     455565 4455543322211111100 0000        011111 122221


Q ss_pred             -CCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388         94 -GFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        94 -g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                       ...+|.|+.-......+.+...+...| .+..+|+|++|.+++.+|+..|
T Consensus        76 ~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R  126 (223)
T PRK14529         76 GKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR  126 (223)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence             234555543223333344444443333 2446899999999999999765

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.76  E-value=8e-08  Score=89.43  Aligned_cols=115  Identities=20%  Similarity=0.208  Sum_probs=74.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc----cC-C------CCH--------------H
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA----NL-A------FSE--------------E   74 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~----~~-~------~~~--------------~   74 (272)
                      .+|.+|+++|++||||||+|..|+.++   |+. .++.+|.+++.+..    +. +      |..              .
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~l---g~~-~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~  328 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRL---GIT-RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP  328 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc---CCc-EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence            468999999999999999999999999   432 36788877653321    00 0      000              0


Q ss_pred             HHHH-----------HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhh
Q psy17388         75 DRNE-----------NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKG  142 (272)
Q Consensus        75 ~~~~-----------~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r  142 (272)
                      ....           ....+..++...+..|..||++++........    .....+...+.+++.++ .+...+|...|
T Consensus       329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdeeeH~~Rf~~R  404 (475)
T PRK12337        329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEALHRRRFELR  404 (475)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHHHHHHHHHHH
Confidence            0001           11123445667788999999999888766544    22334556666777775 55667777665

>KOG3220|consensus

Probab=98.73  E-value=1.2e-07  Score=78.20  Aligned_cols=150  Identities=15%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-ccc-----------------------------CCCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-NAN-----------------------------LAFS   72 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~~~-----------------------------~~~~   72 (272)
                      .+|.++|..||||||+++.+. .+     ++..+|.|.+.+.. .++                             ..|+
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~-----G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~   75 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-AL-----GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS   75 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-Hc-----CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence            478999999999999999998 44     45668888653321 110                             1144


Q ss_pred             HHHHHHHHHH----------HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         73 EEDRNENVRR----------AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        73 ~~~~~~~~~~----------i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +..+......          +.++.+.++.....||.|..--+..   -+..+      -..+|.+.||.++..+|+-.|
T Consensus        76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~~~~------~~~tvvV~cd~~~Ql~Rl~~R  146 (225)
T KOG3220|consen   76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KLLKI------CHKTVVVTCDEELQLERLVER  146 (225)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hHHhh------eeeEEEEEECcHHHHHHHHHh
Confidence            3333222221          1344555555556777775332211   12222      236788999999999999766


Q ss_pred             hhhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        143 HYKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       143 ~~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .. . .....+  .++.++..   .-..++++|||+ .++++..+++...+..
T Consensus       147 d~-l-se~dAe--~Rl~sQmp~~~k~~~a~~Vi~Nn-g~~~~l~~qv~~v~~~  194 (225)
T KOG3220|consen  147 DE-L-SEEDAE--NRLQSQMPLEKKCELADVVIDNN-GSLEDLYEQVEKVLAL  194 (225)
T ss_pred             cc-c-cHHHHH--HHHHhcCCHHHHHHhhheeecCC-CChHHHHHHHHHHHHH
Confidence            31 0 000000  00111111   113568899874 5888888887776654

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.73  E-value=1.5e-08  Score=83.93  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ++|.|+|..||||||+++.|++ +     ++.++|.|.+.+
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~-----G~~vidaD~i~~   35 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-L-----GFPVIDADEIAH   35 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-T-----T-EEEEHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-C-----CCCEECccHHHH
Confidence            5799999999999999999998 5     567788776543

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.71  E-value=1.2e-07  Score=82.99  Aligned_cols=44  Identities=25%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++.+|+|+|.|||||||+|++|++.+...+.++.+++.|.+..
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            46679999999999999999999999976677788999998875

>PLN02348 phosphoribulokinase

Probab=98.71  E-value=1.4e-07  Score=86.31  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      .++.+|.|.|.|||||||+|+.|++.|+.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~   75 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG   75 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            56789999999999999999999999964

>PLN02459 probable adenylate kinase

Probab=98.69  E-value=2e-07  Score=81.17  Aligned_cols=112  Identities=13%  Similarity=0.112  Sum_probs=61.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCCCCHHHHHHHHH--------HHHHHHHH-H
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLAFSEEDRNENVR--------RAAECAKM-F   90 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~-~   90 (272)
                      +++.|+|.|+|||||||+|+.|++.+     ++.+++..+ ++..+..+..+..... ..+.        -+..+... +
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~ei~~~t~lg~~i~-~~~~~G~lVPdeiv~~ll~~~l  101 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLL-----GVPHIATGDLVREEIKSSGPLGAQLK-EIVNQGKLVPDEIIFSLLSKRL  101 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeCcHHHHHHHhccchhHHHHH-HHHHcCCccCHHHHHHHHHHHH
Confidence            44668889999999999999999998     567777544 4443332211111000 0000        01111211 1


Q ss_pred             Hh----CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         91 AE----CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        91 ~~----~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+    ....+|.|+. |  ...++...+-.... ...+|+|++|.+++.+|+..|
T Consensus       102 ~~~~~~~~~g~iLDGF-P--Rt~~Qa~~Le~~~~-id~Vi~L~v~d~~l~~Rl~gR  153 (261)
T PLN02459        102 EAGEEEGESGFILDGF-P--RTVRQAEILEGVTD-IDLVVNLKLREEVLVEKCLGR  153 (261)
T ss_pred             hcccccCCceEEEeCC-C--CCHHHHHHHHhcCC-CCEEEEEECCHHHHHHHhhcc
Confidence            11    1234556542 3  22233222222112 346899999999999999766

>KOG0636|consensus

Probab=98.68  E-value=3e-09  Score=94.08  Aligned_cols=70  Identities=49%  Similarity=0.881  Sum_probs=62.1

Q ss_pred             hhhhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhc--ccCCCC--ccceeEEEecChhhhhh
Q psy17388        201 FFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFN--TLDSNV--NQSVAIVLAVTGEDKQR  270 (272)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~--~l~~~~--~~~~pi~l~~~~~~~~~  270 (272)
                      -.++.++|+|.|+..++.|..++.+||.|||+|||.+.+|.+.+|+.  ||-||.  ..++||+|+++.+++..
T Consensus        71 kae~~d~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~~GS~vnmslPivlaidd~~K~~  144 (466)
T KOG0636|consen   71 KAEAEDDPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVLAIDDDQKTP  144 (466)
T ss_pred             hhhhccCCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeecCceEEEeeccEEEecCcccccc
Confidence            34588999999999999999999999999999999999999999986  566775  58999999999887653

>PLN02842 nucleotide kinase

Probab=98.68  E-value=1.7e-07  Score=88.36  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHH-----------HHHHHHHHHHHHHHHH-Hh
Q psy17388         26 LFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEE-----------DRNENVRRAAECAKMF-AE   92 (272)
Q Consensus        26 ~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~-----------~~~~~~~~i~~~~~~~-~~   92 (272)
                      +|.|+|||||||+|+.|++.+     ++.+++.+++ +..+..+......           ........+.+.+... ..
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~l-----g~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~   75 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKF-----GLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK   75 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHh-----CCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcccc
Confidence            478999999999999999999     5566665443 3322211000000           0011111111111110 11


Q ss_pred             CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+.+|+ |+ .|.  .......+......+.++|+|++|.+++.+|+.+|
T Consensus        76 ~~G~IL-DG-fPR--t~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR  121 (505)
T PLN02842         76 EKGWLL-DG-YPR--SFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGR  121 (505)
T ss_pred             CCcEEE-eC-CCC--cHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcc
Confidence            222444 64 332  22233322222223668999999999999998766

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.67  E-value=2.5e-07  Score=79.53  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE-ecCccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNL   61 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~-ld~D~i   61 (272)
                      ..++.+|.|.|++||||||+++.|+..+...+..+.. +..|.+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~   73 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF   73 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence            3578899999999999999999999999765444333 444443

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.66  E-value=1.3e-07  Score=80.84  Aligned_cols=39  Identities=13%  Similarity=0.150  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCcccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLR   62 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~   62 (272)
                      +|.|.|++||||||+|+.|+..+..  .+..+.++..|.+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            4789999999999999999999853  34456777777664

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN02165 adenylate isopentenyltransferase

Probab=98.64  E-value=2.8e-07  Score=82.78  Aligned_cols=122  Identities=10%  Similarity=0.149  Sum_probs=69.0

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc--cccccc-----------cCC------CCHH---
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINA-----------NLA------FSEE---   74 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i--~~~l~~-----------~~~------~~~~---   74 (272)
                      ..+.++.+|+|.|++||||||+|..|++.+     +..+++.|.+  ..++..           ..+      ....   
T Consensus        38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l-----~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~  112 (334)
T PLN02165         38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF-----PSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGE  112 (334)
T ss_pred             ccCCCCCEEEEECCCCCcHHHHHHHHHHHc-----CCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccce
Confidence            345677899999999999999999999998     3344555543  222210           000      0000   


Q ss_pred             -HHHHHHHHHHHHHHHHHhCCCeEE-EcCCCCcHHHHHHHHH-HH--------------Hh-CCCceEEEEEeCCHHHHH
Q psy17388         75 -DRNENVRRAAECAKMFAECGFIAL-CSFVSPTAAARDRARE-IH--------------RN-ANLEFFEVFVNTPVEICE  136 (272)
Q Consensus        75 -~~~~~~~~i~~~~~~~~~~g~~VI-~d~~~~~~~~r~~~~~-~~--------------~~-~g~~~~~V~L~~~~e~~~  136 (272)
                       ....+.+.....+..+...|...| +.++..   +...+.. ..              .. ...++++++|+++.+++.
T Consensus       113 ~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTgl---Yi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~  189 (334)
T PLN02165        113 LTASEFRSLASLSISEITSRQKLPIVAGGSNS---FIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLF  189 (334)
T ss_pred             eeHHHHHHHHHHHHHHHHHCCCcEEEECChHH---HHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHH
Confidence             112333333445556666665544 443321   2111111 00              00 113456789999999999


Q ss_pred             Hhhhhhhhhh
Q psy17388        137 QRDVKGHYKK  146 (272)
Q Consensus       137 ~Rl~~r~~~~  146 (272)
                      +|+.+|....
T Consensus       190 ~RI~~Rvd~M  199 (334)
T PLN02165        190 EYLSKRVDEM  199 (334)
T ss_pred             HHHHHHHHHH
Confidence            9998885433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.62  E-value=6.7e-07  Score=88.24  Aligned_cols=121  Identities=21%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCCC-CH-HHHHHHHHHHHH----HHHHHHhCC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLAF-SE-EDRNENVRRAAE----CAKMFAECG   94 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~~-~~-~~~~~~~~~i~~----~~~~~~~~g   94 (272)
                      ..+|++.|+||+||||+|+.|++.|.-.|+++.++..+.++..+.. ...+ .. ..+....+....    +...+.+.|
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~G  294 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTD  294 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999766777777777777766542 2111 11 011111222222    222345568


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCC----ceEEEEEeCCHHHHHHhhhhh
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANL----EFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~----~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .++|.|..+.....|..+.+.+++.|.    .++.|..-|+...+.+|+..|
T Consensus       295 gvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r  346 (664)
T PTZ00322        295 GVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLR  346 (664)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHH
Confidence            899999999987777666666666654    455555566776666665433

>PRK05439 pantothenate kinase; Provisional

Probab=98.61  E-value=3.5e-07  Score=81.74  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=36.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLRN   63 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i~~   63 (272)
                      ..+|.+|.|+|+|||||||+|+.|+..+...  +.++..+..|.+..
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            3578899999999999999999999988642  45677888887753

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.61  E-value=2e-07  Score=64.75  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +|+++|.|||||||++++|++.+  .+.++.+++.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence            47899999999999999999998  3456766654

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.58  E-value=4e-08  Score=90.36  Aligned_cols=163  Identities=17%  Similarity=0.202  Sum_probs=83.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHH-HHHHHHHHHHHHhCCCeEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN-VRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~g~~VI   98 (272)
                      .+|.+|+|+|.+||||||++..|.+.|..+ +++.++..+      .....++...+..+ +++....+..+...+..++
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~------~~~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~   75 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG------CHRFDIDREGKDSDLARKAGASTVMISDPEKHAL   75 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC------CCCCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence            468899999999999999999999999776 677766421      11122333222222 2222211222223344444


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH--HHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe-CC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE--ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE-TV  175 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e--~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id-t~  175 (272)
                      +....+   .+...+.......+-++..|-+++..  ++.+|..+. ......++.+++.++...++.+..++..++ .+
T Consensus        76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~-~~~~~~~~~~~v~av~~~~~~~~~~~~~~p~~~  151 (369)
T PRK14490         76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKI-LDLLEQGSVTNVVALVVPDDPASYPDFGLPVFH  151 (369)
T ss_pred             EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCc-ccccccCCCCCEEEEEECCcccccccCCCcccC
Confidence            443332   11111112222223355566666655  444443211 111122234455555554544322222222 12


Q ss_pred             CCCHHHHHHHHHHHHHhC
Q psy17388        176 NVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       176 ~~~~ee~~~~I~~~L~~~  193 (272)
                      -.+++++++.|++++..+
T Consensus       152 ~~~~~~~~~~i~~~~~~~  169 (369)
T PRK14490        152 RDDIAAIADFIEGHLLGR  169 (369)
T ss_pred             cccHHHHHHHHHHHHhcc
Confidence            347899999999988764

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.58  E-value=4e-07  Score=72.99  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHH-HH--hCC
Q psy17388         27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKM-FA--ECG   94 (272)
Q Consensus        27 l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~-~~--~~g   94 (272)
                      |.|+|||||||+|+.|++++     ++.+++..++ ++.+.........- ...+        ..+..+.+. +.  ...
T Consensus         1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~~llr~~~~~~s~~g~~i-~~~l~~g~~vp~~~v~~ll~~~l~~~~~~   74 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVGDLLREEIKSDSELGKQI-QEYLDNGELVPDELVIELLKERLEQPPCN   74 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH-----TSEEEEHHHHHHHHHHTTSHHHHHH-HHHHHTTSS--HHHHHHHHHHHHHSGGTT
T ss_pred             CcCCCCCChHHHHHHHHHhc-----CcceechHHHHHHHHhhhhHHHHHH-HHHHHhhccchHHHHHHHHHHHHhhhccc
Confidence            67999999999999999999     6777775443 33222110000000 0000        001112211 11  123


Q ss_pred             CeEEEc-CCCCcHHHHHHHHHHHH-hCCCceEEEEEeCCHHHHHHhhhh
Q psy17388         95 FIALCS-FVSPTAAARDRAREIHR-NANLEFFEVFVNTPVEICEQRDVK  141 (272)
Q Consensus        95 ~~VI~d-~~~~~~~~r~~~~~~~~-~~g~~~~~V~L~~~~e~~~~Rl~~  141 (272)
                      ..+|.| +... ......+...+. ....+..+|+|+||.+++.+|+..
T Consensus        75 ~g~ildGfPrt-~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   75 RGFILDGFPRT-LEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             TEEEEESB-SS-HHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             ceeeeeecccc-HHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            344444 3322 222333333222 233355889999999999999853

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PLN02772 guanylate kinase

Probab=98.53  E-value=3.3e-07  Score=83.78  Aligned_cols=165  Identities=16%  Similarity=0.190  Sum_probs=82.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCcccccccc--ccCCCCHHHHHH-----------------H
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGIN--ANLAFSEEDRNE-----------------N   79 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~~~l~--~~~~~~~~~~~~-----------------~   79 (272)
                      ...++|+|+|++||||||+.+.|.+.++. .+..+.+. +..-+.+-.  .++.|...+..+                 +
T Consensus       133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshT-TR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~  211 (398)
T PLN02772        133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNL  211 (398)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhhhcccccccccccc-CCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcc
Confidence            34579999999999999999999887631 11111111 111111000  012222111000                 0


Q ss_pred             HHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cccc
Q psy17388         80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTGV  158 (272)
Q Consensus        80 ~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~~  158 (272)
                      |-.-.+.....+++|..+|.+. .+  .....+++..   -.++.++.+..+.+++.+|+..|....  ...+.. +...
T Consensus       212 YGTsk~~V~~vl~~Gk~vILdL-D~--qGar~Lr~~~---l~~v~IFI~PPSlEeLe~RL~~RGtes--eE~I~kRL~~A  283 (398)
T PLN02772        212 YGTSIEAVEVVTDSGKRCILDI-DV--QGARSVRASS---LEAIFIFICPPSMEELEKRLRARGTET--EEQIQKRLRNA  283 (398)
T ss_pred             ccccHHHHHHHHHhCCcEEEeC-CH--HHHHHHHHhc---CCeEEEEEeCCCHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence            1111234455667888888763 22  2223333321   113333444557899999986552110  000100 0001


Q ss_pred             cccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCC
Q psy17388        159 SQPYE---APKNPDLILETVNVPVEKCANSVLDMIAAKGL  195 (272)
Q Consensus       159 ~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~  195 (272)
                      ....+   .+...+.+|.++  +++++.+++.+.|...+-
T Consensus       284 ~~Ei~~~~~~~~fD~vIvND--dLe~A~~~L~~iL~~~~~  321 (398)
T PLN02772        284 EAELEQGKSSGIFDHILYND--NLEECYKNLKKLLGLDGL  321 (398)
T ss_pred             HHHHhhccccCCCCEEEECC--CHHHHHHHHHHHHhhcCc
Confidence            01111   122457788765  899999999999987763

>PRK07429 phosphoribulokinase; Provisional

Probab=98.53  E-value=5.3e-07  Score=81.40  Aligned_cols=40  Identities=23%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.+|.|+|.+||||||+++.|+..++..+  +..+..|.+
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~   45 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY   45 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence            5678999999999999999999999984332  334445555

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.53  E-value=8.2e-07  Score=77.33  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=36.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|+++|.|||||||++++|.+.|...|.++.+++.|.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            5899999999999999999999987788889999998876

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.52  E-value=1.1e-06  Score=75.09  Aligned_cols=168  Identities=15%  Similarity=0.232  Sum_probs=89.9

Q ss_pred             hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC-----C------CCHH---------
Q psy17388         15 DFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL-----A------FSEE---------   74 (272)
Q Consensus        15 ~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~-----~------~~~~---------   74 (272)
                      .-+..+.|.+|+|.|.||.||||+|..||.+|   |+.. .+.+|.+|+.+.+-.     +      |+..         
T Consensus        82 ~ir~~~~p~IILIGGasGVGkStIA~ElA~rL---gI~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~  157 (299)
T COG2074          82 RIRKMKRPLIILIGGASGVGKSTIAGELARRL---GIRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDE  157 (299)
T ss_pred             HHhccCCCeEEEecCCCCCChhHHHHHHHHHc---CCce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCC
Confidence            34455679999999999999999999999999   6654 588898877553210     0      1000         


Q ss_pred             --------H-HHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhh
Q psy17388         75 --------D-RNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHY  144 (272)
Q Consensus        75 --------~-~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~  144 (272)
                              + .....-.+..++......|..+|..++.-.+...+.   ..-  +...+.++|.+ +.+....|...|..
T Consensus       158 ~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~---~~~--~~n~~~~~l~i~dee~Hr~RF~~R~~  232 (299)
T COG2074         158 NPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKE---EAL--GNNVFMFMLYIADEELHRERFYDRIR  232 (299)
T ss_pred             cchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccH---hhh--ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence                    0 001111223455566778877776654432222111   111  12345556655 56666777766632


Q ss_pred             hh--hhhc--ccccccccc--ccCC--CCCCCcE-EEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        145 KK--AREG--KIKSFTGVS--QPYE--APKNPDL-ILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       145 ~~--~r~~--~~~~~~~~~--~~ye--~~~~~~~-~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ..  .+.+  .++.|..++  ..|.  .....++ +|+|+  +.++.++++++.+.+.
T Consensus       233 ~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~--di~etv~~il~~i~~~  288 (299)
T COG2074         233 YTHASRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIEND--DIDETVDRILEDIRKR  288 (299)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCeeccc--cHHHHHHHHHHHHHHH
Confidence            11  1111  112222211  1111  0111233 55543  7888888888887764

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.52  E-value=3.9e-07  Score=80.77  Aligned_cols=43  Identities=12%  Similarity=0.112  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|.|++||||||+|+.|...+...  +..+..+..|.+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            568899999999999999999999888531  2246666666654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PHA03132 thymidine kinase; Provisional

Probab=98.48  E-value=4.6e-07  Score=86.75  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +.+|+|.|..||||||+++.|++.+   |.++..+.
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t~  289 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVFP  289 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Confidence            7899999999999999999999998   55655444

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.48  E-value=2.6e-06  Score=75.55  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=70.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc----cC-------CCC----------HHH-H-
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA----NL-------AFS----------EED-R-   76 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~----~~-------~~~----------~~~-~-   76 (272)
                      .+|.+|+|.|++||||||+|..|+++|   |++ .++.+|.+++.+..    +.       .|.          .+. . 
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l  165 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI  165 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence            578999999999999999999999999   554 36778888743321    00       010          000 0 


Q ss_pred             -------HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhh
Q psy17388         77 -------NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKG  142 (272)
Q Consensus        77 -------~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r  142 (272)
                             ......+..++......|..+|+.++...+.+...   .... ....+.+++.+ +.+...+|...|
T Consensus       166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~---~~~~-~~~~i~~~l~i~~ee~h~~RF~~R  235 (301)
T PRK04220        166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE---KYLE-NPNVFMFVLTLSDEEAHKARFYAR  235 (301)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH---hhhc-CCCEEEEEEEECCHHHHHHHHHHH
Confidence                   00111123445566678888888777665554332   2222 22445566664 567788887665

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.38  E-value=1.3e-05  Score=71.86  Aligned_cols=36  Identities=17%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.+|+|+|++||||||+|..|++.+     +..+++.|.
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds   37 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS   37 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence            356799999999999999999999998     344455554

>PHA00729 NTP-binding motif containing protein

Probab=98.33  E-value=3.2e-06  Score=72.05  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .....|+|+|.||+||||+|.+|++.+
T Consensus        15 ~~f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         15 NGFVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344679999999999999999999998

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.31  E-value=2.8e-06  Score=81.30  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ..+.+|.|.|++||||||+++.|+..++
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence            3467999999999999999999998873

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.29  E-value=3.9e-06  Score=74.06  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +|.|+|.+||||||+++.|+..+...+  ...+..|.+.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcccc
Confidence            478999999999999999999885433  3345556553

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.24  E-value=1.1e-05  Score=64.94  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +++++++|.||+||||+.+.+.+.+
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH
Confidence            4799999999999999999999988

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.22  E-value=1.7e-05  Score=68.02  Aligned_cols=111  Identities=16%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      ....|.+|+|.|..||||..+.+.|.+.|..+|+.+..+....-           .+.+..+   +..+-+.+-..|.+.
T Consensus        27 ~~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~-----------eE~~~p~---lwRfw~~lP~~G~i~   92 (230)
T TIGR03707        27 ETGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSD-----------RERTQWY---FQRYVQHLPAAGEIV   92 (230)
T ss_pred             HcCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH-----------HHHcChH---HHHHHHhCCCCCeEE
Confidence            44579999999999999999999999999766666554432110           0111111   233334455566666


Q ss_pred             EEcCCC-------------CcHHH------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         98 LCSFVS-------------PTAAA------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        98 I~d~~~-------------~~~~~------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      |.+..-             ....+      ...+.+.+.+.|+.++.+||+.|.++..+|+..+
T Consensus        93 IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r  156 (230)
T TIGR03707        93 LFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKAR  156 (230)
T ss_pred             EEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHH
Confidence            654211             10111      1233445566799999999999999999999765

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.21  E-value=1.6e-05  Score=64.12  Aligned_cols=77  Identities=14%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEcCCC
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA-ECGFIALCSFVS  103 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~VI~d~~~  103 (272)
                      |+=.+.+||||||+|.+|...+   | .+.++-.|++...          .....++   .+...+. ....+|++|..+
T Consensus         2 lvPIAtiGCGKTTva~aL~~LF---g-~wgHvQnDnI~~k----------~~~~f~~---~~l~~L~~~~~~vViaDRNN   64 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLF---G-EWGHVQNDNITGK----------RKPKFIK---AVLELLAKDTHPVVIADRNN   64 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHc---C-CCCccccCCCCCC----------CHHHHHH---HHHHHHhhCCCCEEEEeCCC
Confidence            4557899999999999999998   2 1667888887432          1111221   2233332 345688899999


Q ss_pred             CcHHHHHHHHHHHHh
Q psy17388        104 PTAAARDRAREIHRN  118 (272)
Q Consensus       104 ~~~~~r~~~~~~~~~  118 (272)
                      .....|+++...+..
T Consensus        65 h~~reR~ql~~~~~~   79 (168)
T PF08303_consen   65 HQKRERKQLFEDVSQ   79 (168)
T ss_pred             chHHHHHHHHHHHHH
Confidence            888888888776655

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.20  E-value=8.8e-07  Score=70.03  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +|+|+|++||||||+++.|++.+
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999999986

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG4622|consensus

Probab=98.15  E-value=1.2e-05  Score=66.32  Aligned_cols=119  Identities=19%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccccccc--cCCCCHHHHHHHHHHHHHHHHH----------
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINA--NLAFSEEDRNENVRRAAECAKM----------   89 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~~l~~--~~~~~~~~~~~~~~~i~~~~~~----------   89 (272)
                      .++.+.|.|+|||||+++.+.-...+.. .+..++.-|+++-.-.+  +..+. +.|....-.+...+..          
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~k-eqRgr~~~~iEk~ISaiqedtdwppq   80 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAK-EQRGRFECHIEKCISAIQEDTDWPPQ   80 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHH-HHhchHHHHHHHHHHHHhcccCCCch
Confidence            3688999999999999998875443211 12233333444321111  11111 1111111111111111          


Q ss_pred             ---HHh-----CC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         90 ---FAE-----CG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        90 ---~~~-----~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                         ...     +| .+++|+.++.++..|..+.++++++|.-|=.||+....+.+.+++..|
T Consensus        81 vrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~R  142 (291)
T KOG4622|consen   81 VRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHR  142 (291)
T ss_pred             heeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccc
Confidence               111     23 367788888888999999999999999999999999999999999766

>KOG3327|consensus

Probab=98.13  E-value=5.8e-06  Score=67.56  Aligned_cols=168  Identities=14%  Similarity=0.124  Sum_probs=84.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-c---ccccc----ccccCCCCHHHHHH-----HHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-D---NLRNG----INANLAFSEEDRNE-----NVRRAAEC   86 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D---~i~~~----l~~~~~~~~~~~~~-----~~~~i~~~   86 (272)
                      .++.+|++.|..+|||||.+..|...+...+.++..+.- +   .+.+.    +.+.....+.....     .+... ..
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~-~~   81 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHV-SL   81 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHH-HH
Confidence            578899999999999999999999988533222111100 0   00000    01111111111100     01111 12


Q ss_pred             HHHHHhCCCeEEEcCCCCcHHH--------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388         87 AKMFAECGFIALCSFVSPTAAA--------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV  158 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~~~--------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~  158 (272)
                      ++.-+..|..+|+|........        .++..+.=.....|..++||+++++.+.+|=.   |...|..+.+.....
T Consensus        82 i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rgg---fG~Erye~v~fqekv  158 (208)
T KOG3327|consen   82 IKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGG---FGEERYETVAFQEKV  158 (208)
T ss_pred             HHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcC---cchhHHHHHHHHHHH
Confidence            3334457888888854332111        11211111112247899999999999666632   222332222222222


Q ss_pred             cccCC---CCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        159 SQPYE---APKNPD-LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       159 ~~~ye---~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ...|.   .-..+. .++|. +.+++++.++|...++.
T Consensus       159 ~~~~q~l~r~e~~~~~~vDA-s~sve~V~~~V~~i~e~  195 (208)
T KOG3327|consen  159 LVFFQKLLRKEDLNWHVVDA-SKSVEKVHQQVRSLVEN  195 (208)
T ss_pred             HHHHHHHHhccCCCeEEEec-CccHHHHHHHHHHHHHH
Confidence            22222   112334 45665 57999999999766654

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.12  E-value=1e-05  Score=66.82  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-----cccC--CCCH-----------------------
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANL--AFSE-----------------------   73 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-----~~~~--~~~~-----------------------   73 (272)
                      +|.|.+..|||++|+|++|+++|     ++.++|.+.+....     ..+.  .+..                       
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~L-----g~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   75 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKL-----GYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDH   75 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHC-----T--EE-HHHHHHCT------------SS-HHH--HH---HHS----------
T ss_pred             CEEECCCCCCChHHHHHHHHHHc-----CCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccc
Confidence            68999999999999999999999     56667775443211     1000  0000                       


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         74 EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        74 ~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ......+....+++..+.+.|..||+..+..         -+++... +.+.|||.+|.+.+.+|+.++
T Consensus        76 ~~~~~~~~~~~~~i~~la~~~~~Vi~GR~a~---------~il~~~~-~~l~V~i~A~~~~Rv~ri~~~  134 (179)
T PF13189_consen   76 PDDDKIFRAQSEIIRELAAKGNCVIVGRCAN---------YILRDIP-NVLHVFIYAPLEFRVERIMER  134 (179)
T ss_dssp             ----HHHHHHHHHHHHHHH---EEEESTTHH---------HHTTT-T-TEEEEEEEE-HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhccCCEEEEecCHh---------hhhCCCC-CeEEEEEECCHHHHHHHHHHH
Confidence            1111222333456677777888888876543         1233332 578999999999999999765

>PLN02748 tRNA dimethylallyltransferase

Probab=98.09  E-value=4.2e-05  Score=72.03  Aligned_cols=41  Identities=20%  Similarity=0.474  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--ccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--LRNGI   65 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--i~~~l   65 (272)
                      .++.+|+|.|+.||||||+|..|++.+     +..+++.|.  +.+++
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgL   62 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGL   62 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCc
Confidence            567799999999999999999999998     566677774  44444

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.08  E-value=2.6e-05  Score=67.81  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=34.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCC--EEEecCccc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIP--AYALDGDNL   61 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~--~~~ld~D~i   61 (272)
                      .++.|.+|.+.|++|+||||+|+.|+..+...+-.  +..+-+|-+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF  123 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF  123 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence            34678999999999999999999999999754433  455556654

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.07  E-value=7.9e-05  Score=66.01  Aligned_cols=39  Identities=18%  Similarity=0.410  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      +|+|+|++|||||++|..|++.+   +..++..|.-.+.+.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~---~~~iis~Ds~qvY~~l   39 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKL---NAEIISVDSMQIYKGM   39 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC---CCcEEEechhheeeec
Confidence            48999999999999999999998   3344444443344433

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.06  E-value=7.2e-05  Score=69.98  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=40.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNG   64 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i~~~   64 (272)
                      .+|.+|+++|++||||||++..|+..+... |.++.+++.|.+|..
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a  143 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA  143 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence            468899999999999999999999999877 889999999987753

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.04  E-value=1.9e-05  Score=60.94  Aligned_cols=35  Identities=37%  Similarity=0.743  Sum_probs=30.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      |+|.|+||+||||+++.+++.+   +.+++.++...+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~   35 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI   35 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc
Confidence            6899999999999999999998   6677778876654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=98.02  E-value=7.4e-05  Score=65.28  Aligned_cols=160  Identities=16%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ..|.+|+|.|..||||..+.+.|.+.|..+|+.+..+....           ..+.+..   -+..+-+.+-..|.+.|.
T Consensus        54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt-----------~eE~~~p---~lWRfw~~lP~~G~i~IF  119 (264)
T TIGR03709        54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPS-----------AEELDHD---FLWRIHKALPERGEIGIF  119 (264)
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC-----------HHHHcCc---hHHHHHHhCCCCCeEEEE
Confidence            45899999999999999999999999976666554443211           0011111   123344555566777775


Q ss_pred             cCCC-------------CcHHHH------HHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-----cccc--
Q psy17388        100 SFVS-------------PTAAAR------DRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-----GKIK--  153 (272)
Q Consensus       100 d~~~-------------~~~~~r------~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-----~~~~--  153 (272)
                      +..-             ....+.      ..+...+...|+.++.+||+.|.++..+|+..+.......     .++.  
T Consensus       120 ~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~  199 (264)
T TIGR03709       120 NRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKER  199 (264)
T ss_pred             cCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHH
Confidence            5211             001111      2233445567999999999999999999997653211110     0000  


Q ss_pred             -ccccccccCC-------CCCCCcEEEeCCCCC--HHHHHHHHHHHHHhC
Q psy17388        154 -SFTGVSQPYE-------APKNPDLILETVNVP--VEKCANSVLDMIAAK  193 (272)
Q Consensus       154 -~~~~~~~~ye-------~~~~~~~~Idt~~~~--~ee~~~~I~~~L~~~  193 (272)
                       .+......|+       .+..|-++|+.++..  --.+++.|++.|+..
T Consensus       200 ~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~  249 (264)
T TIGR03709       200 AYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESL  249 (264)
T ss_pred             HhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHc
Confidence             1111111111       234567888876543  233677777777765

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.02  E-value=4.8e-05  Score=71.27  Aligned_cols=44  Identities=23%  Similarity=0.449  Sum_probs=40.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.+|+|+|++|+||||++..|+..+...|+.+.+++.|.++.
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~  136 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP  136 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence            46889999999999999999999999988889999999998765

>cd01394 radB RadB

Probab=98.00  E-value=6.5e-05  Score=63.77  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|.|||||||+|..++......|.++.|+|.+.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            46789999999999999999999998877788899998764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.00  E-value=8.5e-05  Score=70.29  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=72.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ...|.+|+|.|..||||+++.+.|.+.|..+|+.+..+....-.           +....+   +..+-..+-..|.++|
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e-----------E~~~~f---lwRfw~~lP~~G~I~I  102 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE-----------ERERPP---MWRFWRRLPPKGKIGI  102 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH-----------HhcCcH---HHHHHHhCCCCCeEEE
Confidence            46789999999999999999999999998777766554422111           011111   2233344555666666


Q ss_pred             EcCCC-------------CcHHH------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         99 CSFVS-------------PTAAA------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        99 ~d~~~-------------~~~~~------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+..-             +...+      ...+.+.+...|+.++.+||++|.++..+|+..|
T Consensus       103 FdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r  165 (493)
T TIGR03708       103 FFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKL  165 (493)
T ss_pred             EcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHH
Confidence            54211             11111      1233445567899999999999999999999765

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.99  E-value=5.5e-05  Score=65.28  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=34.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..+..++|+|++|+|||+++++++..+...|..+.|+..+.
T Consensus        43 ~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         43 EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            34457999999999999999999998877777788877654

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.98  E-value=6.9e-05  Score=63.98  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=36.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++.++.|.|+||+||||+|..++......|.++.|+|.+
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            4678999999999999999999998876678899999988

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.98  E-value=7.4e-05  Score=61.26  Aligned_cols=34  Identities=15%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ++|+|+|+|||||||+|..++..+   +.++.|+.+.
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~   35 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATA   35 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence            479999999999999999999887   4456777654

>PLN02840 tRNA dimethylallyltransferase

Probab=97.96  E-value=5.1e-05  Score=70.36  Aligned_cols=44  Identities=18%  Similarity=0.382  Sum_probs=33.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      ..++.+|+|.|++||||||+|..|++.+   +..++..|.-.+...+
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~---~~~iis~Ds~qvYr~~   61 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRL---NGEIISADSVQVYRGL   61 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHC---CCCeEeccccceecce
Confidence            4567799999999999999999999998   4445555554444433

>KOG1384|consensus

Probab=97.95  E-value=6.7e-05  Score=66.60  Aligned_cols=113  Identities=12%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc--cccccc-----------c-----CC-CCHHH--HHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINA-----------N-----LA-FSEED--RNEN   79 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i--~~~l~~-----------~-----~~-~~~~~--~~~~   79 (272)
                      +-.+|+|+|+.|||||-+|-.||.++     +...++.|.+  .+++..           +     .+ +.++.  ....
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf-----~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~   80 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRF-----PGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGE   80 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhC-----CceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHH
Confidence            56899999999999999999999998     5555666543  233210           0     01 11111  1122


Q ss_pred             HHH-HHHHHHHHHhCCCe-EEEcCCCCcHHHHHHHHHHHHh-------------------CCCceEEEEEeCCHHHHHHh
Q psy17388         80 VRR-AAECAKMFAECGFI-ALCSFVSPTAAARDRAREIHRN-------------------ANLEFFEVFVNTPVEICEQR  138 (272)
Q Consensus        80 ~~~-i~~~~~~~~~~g~~-VI~d~~~~~~~~r~~~~~~~~~-------------------~g~~~~~V~L~~~~e~~~~R  138 (272)
                      ++. ....+..+.+.|.+ ||+.+.+.   +...   ++.+                   .....+.+|++++..++.+|
T Consensus        81 F~~~a~~aie~I~~rgk~PIv~GGs~~---yi~a---l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~  154 (348)
T KOG1384|consen   81 FEDDASRAIEEIHSRGKLPIVVGGSNS---YLQA---LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFER  154 (348)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEeCCchh---hHHH---HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHH
Confidence            333 34556777788865 44444432   2222   2221                   01346889999999999999


Q ss_pred             hhhhhh
Q psy17388        139 DVKGHY  144 (272)
Q Consensus       139 l~~r~~  144 (272)
                      +.+|.-
T Consensus       155 l~~RVD  160 (348)
T KOG1384|consen  155 LDKRVD  160 (348)
T ss_pred             HHHHHH
Confidence            988743

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.95  E-value=9.1e-06  Score=69.61  Aligned_cols=109  Identities=13%  Similarity=0.113  Sum_probs=64.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ..|.+|+|.|..||||+.+.+.|.+.|..+|+.+..+..-.-.              +...--+..+-..+-..|.+.|.
T Consensus        29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e--------------E~~~p~lwRfw~~lP~~G~I~if   94 (228)
T PF03976_consen   29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE--------------ELRRPFLWRFWRALPARGQIGIF   94 (228)
T ss_dssp             HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH--------------HHTS-TTHHHHTTS--TT-EEEE
T ss_pred             CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh--------------HcCCCcHHHHHHhCCCCCEEEEE
Confidence            4569999999999999999999999998777666554321100              00000112233344456666665


Q ss_pred             cCCC-------------CcHH------HHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388        100 SFVS-------------PTAA------ARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus       100 d~~~-------------~~~~------~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +..-             ....      ....+.+.+...|+.++.+||+.|.++..+|+.++
T Consensus        95 ~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~  156 (228)
T PF03976_consen   95 DRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKER  156 (228)
T ss_dssp             ES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHH
T ss_pred             ecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHH
Confidence            4210             1011      11233444556788999999999999999999765

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.95  E-value=1.6e-05  Score=65.08  Aligned_cols=40  Identities=30%  Similarity=0.528  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +++++|+|||||||+++.++..+...|..+.++|.|..+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~   41 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP   41 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence            6899999999999999999999988888899999987543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.95  E-value=1.6e-05  Score=70.12  Aligned_cols=44  Identities=30%  Similarity=0.471  Sum_probs=38.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++.+|.|+|++|+||||++..|+..+...|..+..++.|.++.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~  113 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA  113 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence            45789999999999999999999999988888899999997543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.93  E-value=1.8e-05  Score=73.68  Aligned_cols=44  Identities=25%  Similarity=0.477  Sum_probs=40.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.+|+|+|++||||||++..|+..+...|..+..++.|.+|.
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~  141 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA  141 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence            45789999999999999999999999988899999999998873

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG3877|consensus

Probab=97.93  E-value=0.00018  Score=62.57  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ...++|++.|..|||||++|++||+.|+
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lg   96 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLG   96 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhC
Confidence            4678999999999999999999999993

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.92  E-value=1.7e-05  Score=66.63  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=36.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      |.+|+|.|++|+||||.+..|+.++..+|.++.++..|.+|-
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~   42 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI   42 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence            689999999999999999999999988888899999998774

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=6.7e-05  Score=60.14  Aligned_cols=115  Identities=13%  Similarity=0.126  Sum_probs=69.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSF  101 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~  101 (272)
                      |.+.++.|+.||||||+-.-+...+.  + .+.+++.|.+...+...-+-.  ..-+.-+.+......+.+.|..+....
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~--~-~~~~VN~D~iA~~i~p~~p~~--~~i~A~r~ai~~i~~~I~~~~~F~~ET   76 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLL--P-GIVFVNADEIAAQISPDNPTS--AAIQAARVAIDRIARLIDLGRPFIAET   76 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhc--C-CeEEECHHHHhhhcCCCCchH--HHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            56788999999999999776665552  2 678999999877665321111  111222233333444566776655443


Q ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhh
Q psy17388        102 VSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKG  142 (272)
Q Consensus       102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r  142 (272)
                      +......++.++ -++..|.-+...|+-. +.|...+|++.|
T Consensus        77 tLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~R  117 (187)
T COG4185          77 TLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLR  117 (187)
T ss_pred             eeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHH
Confidence            333334555544 4677776555555554 466788888665

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.92  E-value=1.1e-05  Score=61.91  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=33.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +..++|.|+||+||||+++.|+..+...+..+.+++.+....
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~   43 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE   43 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence            468999999999999999999999854333477787765543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00959 ffh signal recognition particle protein

Probab=97.92  E-value=0.0002  Score=66.97  Aligned_cols=45  Identities=29%  Similarity=0.418  Sum_probs=39.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCcccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNLRNG   64 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i~~~   64 (272)
                      .+|.+|+++|++||||||++..|+..+. ..|.++.+++.|.+|..
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~  142 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA  142 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence            4688999999999999999999999986 46888999999987753

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.91  E-value=2.1e-05  Score=71.29  Aligned_cols=44  Identities=27%  Similarity=0.546  Sum_probs=39.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.+|+|+|++|+||||++..|+..+...|..+.+++.|.+|.
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~  181 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA  181 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence            35789999999999999999999999988888888899997764

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.90  E-value=2e-05  Score=63.19  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAY   54 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~   54 (272)
                      .++-|+++|+||+||||++..+++.|...|+++.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg   37 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG   37 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence            3567999999999999999999999988877654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.88  E-value=2.4e-05  Score=70.53  Aligned_cols=44  Identities=27%  Similarity=0.406  Sum_probs=39.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.+|.|+|++||||||++..|+..+...|..+.+++.|.++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~  155 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA  155 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence            46789999999999999999999999988888898999887653

>PRK04296 thymidine kinase; Provisional

Probab=97.88  E-value=0.00016  Score=60.38  Aligned_cols=37  Identities=14%  Similarity=0.129  Sum_probs=32.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +.+++++|+||+||||.+..++.++..+|..+.++..
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~   38 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP   38 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence            5789999999999999999999999878888887743

>PRK13768 GTPase; Provisional

Probab=97.87  E-value=5.3e-05  Score=66.10  Aligned_cols=40  Identities=25%  Similarity=0.412  Sum_probs=35.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +++|++.|++||||||++..++..+...|.++.++|.|.-
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~   41 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA   41 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence            4689999999999999999999999888989988887743

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=0.00018  Score=66.22  Aligned_cols=42  Identities=17%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +|.+|.|.|+.||||||++..|+..+...|..+.+++.|..|
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            467999999999999999999999998788889999999776

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.82  E-value=3.5e-05  Score=69.66  Aligned_cols=42  Identities=24%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..++.+|.|+|+|||||||++..|...+...|+++.++..|.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp   94 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP   94 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            457889999999999999999999999988888888877764

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.81  E-value=0.00022  Score=61.40  Aligned_cols=41  Identities=17%  Similarity=0.295  Sum_probs=35.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~   60 (272)
                      .++.+++|+|.||+||||++..++..+... |.++.|++.+.
T Consensus        11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~   52 (242)
T cd00984          11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM   52 (242)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence            467899999999999999999998877665 88999988664

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>CHL00181 cbbX CbbX; Provisional

Probab=97.81  E-value=0.00095  Score=59.35  Aligned_cols=30  Identities=27%  Similarity=0.599  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQG   50 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g   50 (272)
                      ++..++|.|+||+||||+|+.+++.+...|
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g   87 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLG   87 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            466799999999999999999999886443

>KOG3308|consensus

Probab=97.80  E-value=0.00012  Score=60.86  Aligned_cols=40  Identities=13%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ++-.+|.|.|.+.|||||+|+.|.+.++    ++..+..|++.+
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~----~~~lIhqDDFyK   41 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFP----GCSLIHQDDFYK   41 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHcc----CCeeeccccccC
Confidence            3447899999999999999999999996    455777777754

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.79  E-value=4.2e-05  Score=62.76  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      +++.++.|+|++||||||+++.|...|...|+.+..+
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I   40 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI   40 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence            4566999999999999999999999997777655544

>PRK09169 hypothetical protein; Validated

Probab=97.77  E-value=3.9e-05  Score=81.91  Aligned_cols=108  Identities=10%  Similarity=-0.084  Sum_probs=66.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-cccC--CCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-NANL--AFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ...|+|.|++|+||||+++.|+..|     +..++|.|.....- ...+  .|....  ...+.....++.++. ...||
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~L-----g~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVL 2181 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGL-----RVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR-WEVVL 2181 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHh-----CCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEE
Confidence            3469999999999999999999999     56678877543311 1110  011000  111111233334444 44566


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ......  ......+..+...|   ++||+..+.+++.+|+.++
T Consensus      2182 STGGGa--v~~~enr~~L~~~G---lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2182 PAEGFG--AAVEQARQALGAKG---LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             eCCCCc--ccCHHHHHHHHHCC---EEEEEECCHHHHHHHhccC
Confidence            554443  34445556666677   7899999999999998654

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.74  E-value=0.00046  Score=63.67  Aligned_cols=49  Identities=24%  Similarity=0.394  Sum_probs=43.7

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG   64 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~   64 (272)
                      .....+|.+|++.|+-||||||.+-.||..|..+|.++..+..|.+|..
T Consensus        94 ~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA  142 (451)
T COG0541          94 NLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA  142 (451)
T ss_pred             ccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence            3345689999999999999999999999999999999999999998863

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.72  E-value=8.1e-05  Score=68.92  Aligned_cols=38  Identities=21%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      |..|+|.|+||+||||+|+.|++.+   +.+++.+|...+.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~   87 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT   87 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhc
Confidence            6789999999999999999999999   6677777765454

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.72  E-value=4.4e-05  Score=64.97  Aligned_cols=43  Identities=26%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ...+..|+|.|++|+||||+|+.+++.+...+.++.+++...+
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            4567789999999999999999999988766777877775544

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG2134|consensus

Probab=97.72  E-value=0.00021  Score=64.54  Aligned_cols=123  Identities=12%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSF  101 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~  101 (272)
                      +.+|++.|.|||||||.+...-..-     +...+..|.+...                +.........+..|..||.|.
T Consensus       269 ~eiV~~vgfp~sGks~f~a~~~~~~-----~y~~vn~d~lg~~----------------~~C~~~~~e~l~~~~sVvidn  327 (422)
T KOG2134|consen  269 GEIVVAVGFPGSGKSTFAAKRVVPN-----GYKIVNADTLGTP----------------QNCLLANAEALKHGKSVVIDN  327 (422)
T ss_pred             CcEEEEEecCCCCcchhhhhhcccC-----ceeEeecccCCCc----------------hhhHHHHHHHhhcccEEeeCC
Confidence            3899999999999999988554432     3344555554321                111122345567888999999


Q ss_pred             CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--cccccccCCCC
Q psy17388        102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--FTGVSQPYEAP  165 (272)
Q Consensus       102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--~~~~~~~ye~~  165 (272)
                      .+|-...|+.+.+.+...+++..++.+.++.+....-+..|..+..-......  +...+..|..|
T Consensus       328 t~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~p  393 (422)
T KOG2134|consen  328 TNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKP  393 (422)
T ss_pred             CCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCc
Confidence            99999999999999999999999999999999988887666432222222222  33345666655

>PRK08727 hypothetical protein; Validated

Probab=97.72  E-value=0.0003  Score=60.57  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .....++|.|++|+|||+++.+++..+...|..+.|+..+.
T Consensus        39 ~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~   79 (233)
T PRK08727         39 QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA   79 (233)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence            34456999999999999999999998887788888877544

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=97.71  E-value=7e-05  Score=57.47  Aligned_cols=36  Identities=36%  Similarity=0.656  Sum_probs=33.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      |+++|.+|+||||++..|++.+..+|.++..+|.|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            789999999999999999999988888999999885

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PLN02796 D-glycerate 3-kinase

Probab=97.69  E-value=5.1e-05  Score=68.60  Aligned_cols=42  Identities=24%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.+|.|+|++||||||+++.|...+...|..+..+..|.+
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            467899999999999999999999998654544555555544

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.68  E-value=8.2e-05  Score=62.67  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|+|+||||||+++..++......|.++.|+|.+.
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            36789999999999999999999988766788899999875

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.68  E-value=7.7e-05  Score=57.79  Aligned_cols=42  Identities=31%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..+..++|.|++|+||||+++.+++.+...+.++.+++....
T Consensus        17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~   58 (151)
T cd00009          17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL   58 (151)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence            346689999999999999999999998655566766665443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.68  E-value=0.00036  Score=63.72  Aligned_cols=47  Identities=23%  Similarity=0.205  Sum_probs=35.2

Q ss_pred             cchhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388          9 KESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus         9 ~~~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +..-+|.++.+..-...+|-||||+||||+|+.|++.+   +..+..++.
T Consensus        35 ~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sA   81 (436)
T COG2256          35 EGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSA   81 (436)
T ss_pred             CCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEecc
Confidence            34445666655555567899999999999999999998   556665553

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.67  E-value=6.3e-05  Score=60.72  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +|.|+|++||||||++.+|.+.+..+|+++.++..|
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~   36 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD   36 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            478999999999999999999998888888888765

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.66  E-value=8.2e-05  Score=64.38  Aligned_cols=41  Identities=22%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ..+..+|-|+|+||+||||+..+|.+.+...|.++.++.-|
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD   66 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD   66 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence            45678999999999999999999999999888887766544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.66  E-value=4.8e-05  Score=69.10  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ----GIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~----g~~~~~ld~D~i   61 (272)
                      .+.++++|.|+|||||||+|++|++.|..-    .-+.+.+..+.+
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~  121 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE  121 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence            356789999999999999999999999531    014556655443

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.66  E-value=6.9e-05  Score=69.25  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=34.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|.|++||||||+++.|...+...|..+..+.-|.+.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            4789999999999999999999998885555556666666554

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.64  E-value=8.2e-05  Score=65.97  Aligned_cols=42  Identities=19%  Similarity=0.324  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-G-IPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g-~~~~~ld~D~i~   62 (272)
                      ++.+|.|+|++||||||++..|+..+... | ..+.+++.|..+
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            56799999999999999999999988765 4 788899988654

>PF13173 AAA_14: AAA domain

Probab=97.64  E-value=0.00069  Score=52.61  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=57.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA-ECGFIALCS  100 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~VI~d  100 (272)
                      ..+++|.|+.|+||||+++.+++.+. ...++.+++-|.......           .... +.+...... .....++.|
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~i~iD   68 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRL-----------ADPD-LLEYFLELIKPGKKYIFID   68 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHH-----------hhhh-hHHHHHHhhccCCcEEEEe
Confidence            35899999999999999999999873 113566777654432100           0000 111111112 233456666


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHh
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR  138 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~R  138 (272)
                      -+-....+...++.+.+..  +-..|++..|......+
T Consensus        69 Eiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   69 EIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSLLSK  104 (128)
T ss_pred             hhhhhccHHHHHHHHHHhc--cCceEEEEccchHHHhh
Confidence            4443345556666666543  33567787776655433

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.61  E-value=0.001  Score=59.54  Aligned_cols=45  Identities=31%  Similarity=0.557  Sum_probs=41.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..+|.+|+|.|..|+||||....|+.++...|..+....+|.||.
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA  180 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA  180 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence            356999999999999999999999999999999999999998875

>KOG0744|consensus

Probab=97.61  E-value=0.00015  Score=64.42  Aligned_cols=25  Identities=36%  Similarity=0.511  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++|++.||||+||||++++|+++|
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkL  201 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKL  201 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhh
Confidence            4689999999999999999999999

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.60  E-value=0.0041  Score=59.07  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +.|..++|+|+||+||||+|+.+++.+.
T Consensus        34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         34 SISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456689999999999999999999984

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.59  E-value=0.0011  Score=57.30  Aligned_cols=41  Identities=22%  Similarity=0.236  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.+++|.|+|||||||+|..+.......|.++.|+..+.
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            36789999999999999999987765445677888888664

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.59  E-value=9.8e-05  Score=64.95  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ...++.+|-|+|+||+||||+..+|...|.+.|..+.++.-|
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD   88 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD   88 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence            345677999999999999999999999999999877665544

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.59  E-value=0.00012  Score=58.02  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE-EecCc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAY-ALDGD   59 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~-~ld~D   59 (272)
                      ++|.++|+.+|||||+++.|...|..+|+.+. +.+.|
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~   38 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD   38 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence            37899999999999999999999998998876 55544

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.59  E-value=0.00011  Score=53.11  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +|+++|..|+||||++..|+..|...|.++..+|
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            4788999999999999999999988898998888

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.58  E-value=0.00012  Score=65.39  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.+|.|+|++||||||++..|...+...|..+.+++.|.
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~   72 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP   72 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            56889999999999999999999999988888888888773

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.58  E-value=9.7e-05  Score=58.77  Aligned_cols=37  Identities=24%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +++|+|+||+||||++..++..+...|.++.+++.+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~   37 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE   37 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence            3789999999999999999999876777888887654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=97.57  E-value=0.00022  Score=66.02  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +|..|+|.|+||+||||+|++|++.+   +.+++.+|.-.+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~   83 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF   83 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeeccee
Confidence            46789999999999999999999999   555655654333

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK08116 hypothetical protein; Validated

Probab=97.56  E-value=0.00051  Score=60.48  Aligned_cols=41  Identities=34%  Similarity=0.464  Sum_probs=34.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +.-++|.|.+|+|||++|.+++..+..+|.++.+++...+.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll  154 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL  154 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            34589999999999999999999998778888888765543

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.56  E-value=0.0001  Score=62.68  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ....++|.||||.||||+|+.+++.+   |.++..+++..
T Consensus        49 ~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~   85 (233)
T PF05496_consen   49 ALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPA   85 (233)
T ss_dssp             ---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC
T ss_pred             CcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchh
Confidence            34579999999999999999999999   66666666543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=97.56  E-value=0.0024  Score=52.24  Aligned_cols=110  Identities=18%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----------ccCCCCHHHHH---HHHHHH-----H
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----------ANLAFSEEDRN---ENVRRA-----A   84 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----------~~~~~~~~~~~---~~~~~i-----~   84 (272)
                      +|+|+|-.+|||.|+|..|.++|......++-++. .+.+.+.           .+-.|...-|.   .|.+..     .
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~-piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~   79 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG-PLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPG   79 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecH-HHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCcc
Confidence            58999999999999999999988321111344432 2221111           11122222121   121111     1


Q ss_pred             HHHHHHH---hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388         85 ECAKMFA---ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD  139 (272)
Q Consensus        85 ~~~~~~~---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl  139 (272)
                      .+++...   ....+||.|.-..  ...+.++...   |..+++|.+.++.+++.+|.
T Consensus        80 ~F~r~~~~~~~~~v~iIsD~Rr~--~dv~~f~~~~---g~~~~~VRV~AseetR~~Rg  132 (182)
T TIGR01223        80 FFCRKIVEGISQPIWLVSDTRRV--SDIQWFREAY---GAVTQTVRVVALEQSRQQRG  132 (182)
T ss_pred             HHHHHHHhccCCCEEEEeCCCcc--cHHHHHHHHc---CCceEEEEEecCHHHHHHHH
Confidence            1222222   2233444443222  2334444433   55789999999999999996

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>PRK05642 DNA replication initiation factor; Validated

Probab=97.55  E-value=0.00038  Score=59.99  Aligned_cols=41  Identities=20%  Similarity=0.184  Sum_probs=34.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ...++|.|++|+|||+++++++..+..+|..+.|++.+.+.
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~   85 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL   85 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence            35789999999999999999998887778888898876653

>COG4240 Predicted kinase [General function prediction only]

Probab=97.54  E-value=0.00012  Score=62.03  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=38.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~   63 (272)
                      .+|.++.|+|+.||||||++..|...|.++| ..+..++-|++..
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl   92 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL   92 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence            4689999999999999999999999998888 5788888888754

>KOG1532|consensus

Probab=97.54  E-value=0.00037  Score=60.61  Aligned_cols=41  Identities=32%  Similarity=0.546  Sum_probs=35.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|.+|++.|+.||||||+.+.|-..+.+.+.+-+.++-|-
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP   57 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP   57 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence            67889999999999999999999999988777777777663

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00016  Score=66.24  Aligned_cols=44  Identities=20%  Similarity=0.284  Sum_probs=39.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++.+|+|+|+.|+||||++..|+..+..+|.++.+++.|.++.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence            45789999999999999999999998877888899999998865

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.54  E-value=0.0015  Score=58.27  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      .+.+|+|+|+.|||||.+|-.|+++.   | .++..|+-.+.+++
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~~---~-eIIsaDS~QvYr~l   43 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKGK---A-EIINVDSIQVYKEF   43 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC---C-cEEeccHHHHHCCC
Confidence            34589999999999999999999983   3 44444443444444

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.53  E-value=0.00076  Score=59.09  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~   60 (272)
                      .++.+++|.|+||+||||++.+++..+... |.++.|++.+.
T Consensus        28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~   69 (271)
T cd01122          28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE   69 (271)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence            467899999999999999999998887555 88888888653

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.53  E-value=8.9e-05  Score=58.19  Aligned_cols=27  Identities=30%  Similarity=0.332  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.+|+|.|.+||||||+++.+++.+
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            567899999999999999999999998

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.00014  Score=67.39  Aligned_cols=43  Identities=23%  Similarity=0.345  Sum_probs=36.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL-IAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L-~~~g~~~~~ld~D~i~~   63 (272)
                      ++.+|+|+|++||||||++..|+..+ ...|..+.+++.|..+.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~  265 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence            56789999999999999999999765 34577788999998665

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.52  E-value=0.0014  Score=60.08  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+...++++|+..|||||++..|+.++-++|+++.++|.|.
T Consensus        71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv  111 (398)
T COG1341          71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV  111 (398)
T ss_pred             cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence            56678999999999999999999999998899999999884

>PRK12377 putative replication protein; Provisional

Probab=97.51  E-value=0.00093  Score=58.11  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=35.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ...++|.|+||+|||++|.+++..+...|+.+.++....+..
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~  142 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS  142 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence            357899999999999999999999988888888887665544

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.51  E-value=0.0027  Score=57.21  Aligned_cols=37  Identities=22%  Similarity=0.185  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEecCc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQG--IPAYALDGD   59 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g--~~~~~ld~D   59 (272)
                      ..++|.|+||+||||+|+++++.+...+  .++.+++..
T Consensus        37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~   75 (337)
T PRK12402         37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA   75 (337)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence            3688999999999999999999885332  234455543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.50  E-value=8.7e-05  Score=64.17  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=26.5

Q ss_pred             EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        27 l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.|++||||||+++.+.+.+...|.++..++-|-
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence            5899999999999999999988888888877663

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0733|consensus

Probab=97.49  E-value=0.0006  Score=65.23  Aligned_cols=43  Identities=28%  Similarity=0.523  Sum_probs=35.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      .+|+=|+|.||||+|||.+|++++..+   |.+++-+..-.+..++
T Consensus       221 ~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApeivSGv  263 (802)
T KOG0733|consen  221 RPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEIVSGV  263 (802)
T ss_pred             CCCCceeeeCCCCccHHHHHHHHhhhc---CCceEeecchhhhccc
Confidence            466679999999999999999999999   7787777765554444

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.0026  Score=56.79  Aligned_cols=43  Identities=21%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN   66 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~   66 (272)
                      ++.+|+|+||.+||||-+|-.|++++   |..++.+|+-.+.+++.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~---~~eIIs~DSmQvYr~md   44 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRL---GGEIISLDSMQVYRGLD   44 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHc---CCcEEecchhhhcCCCc
Confidence            46799999999999999999999999   44555555444455443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.49  E-value=0.00027  Score=57.43  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++|..|.|+||+||||||+-++++...
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            678899999999999999999999765

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.47  E-value=0.0016  Score=56.75  Aligned_cols=41  Identities=20%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|-|||||||+||.|.......+ +.+++++.++
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i   77 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDI   77 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcch
Confidence            4788999999999999999999998775322 3455665543

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.47  E-value=0.002  Score=55.04  Aligned_cols=40  Identities=18%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++.+++|.|.||+||||++..++......|.++.+++.+
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e   57 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE   57 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            4678999999999999999998876544457778888764

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.47  E-value=0.00046  Score=62.92  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=36.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG   64 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~   64 (272)
                      ..|..+.|.|+||+|||.+|+++++.+   |.+++.++..++...
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk  187 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE  187 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC
Confidence            578899999999999999999999999   778888887766543

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.47  E-value=0.00016  Score=56.84  Aligned_cols=30  Identities=30%  Similarity=0.640  Sum_probs=25.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      |+|.|+||+|||++++.+++.+   +.++..+.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~   31 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL---GRPVIRIN   31 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHh---hcceEEEE
Confidence            7899999999999999999999   55554443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.46  E-value=0.0084  Score=52.23  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+.+++|+|++|+||||+++.+...+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            345899999999999999999999874

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.46  E-value=0.00023  Score=57.65  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+|.|+|.+||||||+++.|...|...|+++..+..
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~   37 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH   37 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence            479999999999999999999999878877665543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PF13245 AAA_19: Part of AAA domain

Probab=97.46  E-value=0.00028  Score=49.85  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=18.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ...+.++.|+|||||||++..+...+
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34578889999999995555555444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.46  E-value=0.00016  Score=57.81  Aligned_cols=36  Identities=28%  Similarity=0.334  Sum_probs=32.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      |.++|.+||||||++..++..+...|.++.+++.|.
T Consensus         2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~   37 (148)
T cd03114           2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP   37 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            788999999999999999999988888888888774

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.45  E-value=0.012  Score=55.85  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+..++|+|++|+||||+|+.+++.+.
T Consensus        38 ri~ha~Lf~GP~GtGKTTlAriLAk~Ln   65 (484)
T PRK14956         38 KIGHAYIFFGPRGVGKTTIARILAKRLN   65 (484)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456789999999999999999999984

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.44  E-value=0.00011  Score=60.59  Aligned_cols=47  Identities=21%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN   66 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~   66 (272)
                      .++..++|.|++|+|||++|.+++..+-.+|+.+.|++...+...+.
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            35678999999999999999999999888999999998776655443

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.44  E-value=0.00021  Score=60.99  Aligned_cols=42  Identities=17%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..+..++|+|++|+|||++|++++..+...|.++.+++...+
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            345679999999999999999999988777778888876543

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.44  E-value=0.0044  Score=56.96  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+..++|+|++|+||||+|+++++.+.
T Consensus        36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         36 RIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            4466789999999999999999999983

>PRK05973 replicative DNA helicase; Provisional

Probab=97.44  E-value=0.00024  Score=61.24  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=34.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++.+++|.|.||+||||+|-.++......|.++.|++.+
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE  101 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE  101 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            4678999999999999999999988766668888888755

>PRK04195 replication factor C large subunit; Provisional

Probab=97.43  E-value=0.001  Score=63.44  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+.++..++|.|+||+||||+|++|++.+   |+.+..++.
T Consensus        35 ~g~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielna   72 (482)
T PRK04195         35 KGKPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNA   72 (482)
T ss_pred             cCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcc
Confidence            34457889999999999999999999998   666666654

>PRK04328 hypothetical protein; Provisional

Probab=97.43  E-value=0.002  Score=56.08  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.+++|.|+||||||++|..+...-...|.++.|++.+.
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee   61 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE   61 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence            6789999999999999999997766445688888888654

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.41  E-value=0.0014  Score=55.90  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~   60 (272)
                      ++.++++.|+||||||+++.+++..-..+ |.++.|+..+.
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee   58 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE   58 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence            67899999999999999999977655455 88899988764

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.41  E-value=0.00024  Score=57.59  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=32.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ++++-|+|.++|||||+...|.+.|.++|+.+..+-
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK   37 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK   37 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence            578999999999999999999999999998877653

>PLN03025 replication factor C subunit; Provisional

Probab=97.41  E-value=0.0042  Score=56.00  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=26.6

Q ss_pred             hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++....+.+...++|.|+||+||||+|+++++.+.
T Consensus        25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            34333334434578999999999999999999984

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.41  E-value=0.004  Score=53.72  Aligned_cols=48  Identities=23%  Similarity=0.362  Sum_probs=39.7

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +..+.+.++..++|.|..|+|||++.++|...+...|..++-++.+.+
T Consensus        44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L   91 (249)
T PF05673_consen   44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL   91 (249)
T ss_pred             HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence            345567788899999999999999999999999888877776665544

>PRK09183 transposase/IS protein; Provisional

Probab=97.40  E-value=0.00024  Score=62.23  Aligned_cols=41  Identities=24%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++..++|.|++|+||||++.+|+..+...|+.+.+++...+
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l  141 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL  141 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence            56678999999999999999999887677888887764433

>KOG0780|consensus

Probab=97.39  E-value=0.0014  Score=59.71  Aligned_cols=47  Identities=26%  Similarity=0.451  Sum_probs=43.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      ..+|.+|.|.|+.||||||.+-.||-.+..+|+.+..+-.|.+|.+-
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA  144 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA  144 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence            35789999999999999999999999999999999999999998754

>PRK06893 DNA replication initiation factor; Validated

Probab=97.39  E-value=0.00031  Score=60.33  Aligned_cols=38  Identities=11%  Similarity=0.056  Sum_probs=32.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ...++|.|+||+|||+++++++..+..++.++.|++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            34789999999999999999999987677777777653

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.38  E-value=0.0002  Score=55.44  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.+|+|.|..||||||++|.+++.|
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            567899999999999999999999999

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.37  E-value=0.016  Score=55.88  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +.+..++|+|++|+||||+|+.+++.|.
T Consensus        36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~   63 (546)
T PRK14957         36 KVHHAYLFTGTRGVGKTTLGRLLAKCLN   63 (546)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455689999999999999999999984

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=97.37  E-value=0.00029  Score=64.81  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=34.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ++.+|.|+|.+||||||+...|...|..+|+.+.++-.|
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~  242 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS  242 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence            467999999999999999999999999888888766543

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.37  E-value=0.0046  Score=55.19  Aligned_cols=35  Identities=26%  Similarity=0.478  Sum_probs=26.2

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      +..........++|+|++|+||||+++.+++.+..
T Consensus        30 ~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~   64 (319)
T PRK00440         30 KSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG   64 (319)
T ss_pred             HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            33333333335799999999999999999999853

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.36  E-value=0.00025  Score=63.00  Aligned_cols=41  Identities=24%  Similarity=0.487  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGI----PAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~----~~~~ld~D~i   61 (272)
                      ++..++|.|+||+||||+|+++++.+...|.    +++.++.+.+
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l  101 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL  101 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence            3457999999999999999999998865443    3555554433

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=97.35  E-value=0.00039  Score=62.91  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=38.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+.++|.++|..|+||||++..|+..|..+|.++..+|.|.-.
T Consensus        29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~   71 (329)
T cd02033          29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS   71 (329)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence            5678999999999999999999999999899999999988543

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.35  E-value=0.0039  Score=59.22  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=73.1

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      ....|.+|+|.|..+|||....+.|.+.+..+|+.+.-+....              +.+....-+..+.+.+-..|.+.
T Consensus       295 ~~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt--------------~~E~~~~~lwRf~~~lP~~G~i~  360 (493)
T TIGR03708       295 FRKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPT--------------DEEKAQHYLWRFWRHIPRRGRIT  360 (493)
T ss_pred             hCCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcC--------------HHHHcCcHHHHHHHhCCCCCeEE
Confidence            3567999999999999999999999999976666554332211              11111112344455666677777


Q ss_pred             EEcCC----------C---CcHHHHH------HHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         98 LCSFV----------S---PTAAARD------RAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        98 I~d~~----------~---~~~~~r~------~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      |.|..          .   ....+..      .+...+...|.-++.+||+.|.++..+|+..|.
T Consensus       361 iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~  425 (493)
T TIGR03708       361 IFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERE  425 (493)
T ss_pred             EEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHh
Confidence            75521          1   1112222      223345567999999999999999999997653

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.35  E-value=0.0003  Score=62.10  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|.|+|.+||||||++..|...|..+| .+.+++.|-
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~   38 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD   38 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence            4799999999999999999999999888 788777653

>PRK09087 hypothetical protein; Validated

Probab=97.35  E-value=0.00094  Score=57.28  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ...++|.|++||||||+++++++..     .+.|++.+.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~~   77 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPNE   77 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHHH
Confidence            3468999999999999999999876     566777643

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.35  E-value=0.015  Score=57.05  Aligned_cols=29  Identities=34%  Similarity=0.527  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.+..++|+|++|+||||+|+.+++.+.
T Consensus        34 grl~HAyLF~GPpGvGKTTlAriLAK~Ln   62 (702)
T PRK14960         34 GRLHHAYLFTGTRGVGKTTIARILAKCLN   62 (702)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34467889999999999999999999993

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.35  E-value=0.011  Score=56.73  Aligned_cols=31  Identities=29%  Similarity=0.410  Sum_probs=26.3

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      .+..|..++|+|+||+||||+|+++++.+..
T Consensus        32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3345667899999999999999999999953

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.33  E-value=0.00033  Score=57.58  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +++|.|+||+|||+++..++......|.++.|++.+.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~   37 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE   37 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            3789999999999999999887766788888888653

A related protein is found in archaea.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.33  E-value=0.0023  Score=57.35  Aligned_cols=40  Identities=28%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~   60 (272)
                      ++.++.|+|+|||||||++-.++.....      .+..++|+|++.
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~  139 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN  139 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence            6789999999999999999999876421      123788999875

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK08181 transposase; Validated

Probab=97.33  E-value=0.00018  Score=63.37  Aligned_cols=43  Identities=26%  Similarity=0.311  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ++..++|.|++|+|||++|.+++..+..+|+.+.|++...+..
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~  147 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ  147 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence            4567999999999999999999998877888888887655443

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.32  E-value=0.018  Score=56.17  Aligned_cols=29  Identities=38%  Similarity=0.479  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++-+..++|+|++|+||||+|+.+++.+.
T Consensus        32 ~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         32 GRINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566789999999999999999999984

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.32  E-value=0.00019  Score=60.51  Aligned_cols=41  Identities=20%  Similarity=0.378  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.+++|+|+|||||||+-|.|-. |..-......+|++.+
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~   66 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDV   66 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEec
Confidence            5788999999999999999999875 3332334566776433

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.31  E-value=0.00024  Score=62.32  Aligned_cols=34  Identities=21%  Similarity=0.441  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +..|+|.|+||+|||++|++|++.+   |.++..+..
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~   54 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLING   54 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeC
Confidence            4567899999999999999999987   677776654

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.31  E-value=0.004  Score=55.82  Aligned_cols=38  Identities=24%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .++.|.++++.|++|+||||+++++++.+   +.++.+++.
T Consensus        39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~   76 (316)
T PHA02544         39 KGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNG   76 (316)
T ss_pred             cCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEecc
Confidence            34456788889999999999999999987   445555543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.31  E-value=0.00026  Score=57.92  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=24.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPA   53 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~   53 (272)
                      .|+|+|.||+||||+.+.+.+.+...|.++
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v   30 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV   30 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence            389999999999999999999997655543

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.30  E-value=0.014  Score=57.99  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+..++|+|++|+||||+++.|++.|.
T Consensus        36 RL~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         36 RLHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3466788999999999999999999994

>PRK06526 transposase; Provisional

Probab=97.30  E-value=0.00016  Score=63.20  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+..++|.|+||+|||++|.+|+..+...|+.+.+.....+
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l  137 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW  137 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence            45679999999999999999999988777887766554433

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.29  E-value=0.00029  Score=57.58  Aligned_cols=40  Identities=30%  Similarity=0.349  Sum_probs=24.7

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .+..+.+++|.|.+|+||||+.+++.+.+...+.-+..++
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~   59 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISIN   59 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEE
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            3456789999999999999999999999876532244443

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.29  E-value=0.00026  Score=62.01  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      .+..++|.|+||+||||+|+.+++.+..
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~   68 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKE   68 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3467899999999999999999998853

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.29  E-value=0.00041  Score=60.75  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=34.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ++.+++|+|.||+||||+|.+++......|.++.|++.+
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            678999999999999999999987765668888888865

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.29  E-value=0.00027  Score=54.53  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      +.+.+++|.|++|+||||+++.+.+.+..
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            34578999999999999999999998853

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.29  E-value=0.011  Score=57.87  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+..++|+|++|+||||+|+.|++.|.
T Consensus        34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             hCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344567789999999999999999999994

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.29  E-value=0.001  Score=63.39  Aligned_cols=40  Identities=28%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..|+-|+|.|+||+|||++|++++..+   |.+++.++...+.
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~  296 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF  296 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc
Confidence            456779999999999999999999998   6677777765443

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.29  E-value=0.00018  Score=58.28  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~   45 (272)
                      |+|+|.+|+||||+++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            899999999999999999987

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0056  Score=53.08  Aligned_cols=41  Identities=24%  Similarity=0.380  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..+.++++.|+|||||||+-+++-+.+... -.-+++++..+
T Consensus        25 ~~gef~vliGpSGsGKTTtLkMINrLiept-~G~I~i~g~~i   65 (309)
T COG1125          25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDI   65 (309)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhcccCCC-CceEEECCeec
Confidence            468899999999999999999998776432 13455665443

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.28  E-value=0.00036  Score=61.80  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      |.........+|.|+|+|||||||+...+...|... .++.++.+|.
T Consensus        96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~  141 (290)
T PRK10463         96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQ  141 (290)
T ss_pred             HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCc
Confidence            344444667899999999999999999999988432 3566777663

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.28  E-value=0.0012  Score=57.71  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=37.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++.+++++|.||||||+++.+........|.++.|+..+.-.
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~   63 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP   63 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence            4678999999999999999999999888889999999877543

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.28  E-value=0.005  Score=52.00  Aligned_cols=40  Identities=25%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI   65 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l   65 (272)
                      .+++|.|+.|+|||.+|-+|++++   |.+++.+|.=.....+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Driq~y~~l   41 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKT---GAPVISLDRIQCYPEL   41 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGG
T ss_pred             cEEEEECCCCCChhHHHHHHHHHh---CCCEEEecceeccccc
Confidence            578999999999999999999999   6677777764444433

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.28  E-value=0.00053  Score=58.95  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.+.|++||||||+|..+...+...|.++.|++.+.
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~   62 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL   62 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            45779999999999999998777666655677888887654

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.28  E-value=0.015  Score=55.44  Aligned_cols=30  Identities=30%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++-+.-++|+|++|+||||+|+.+++.+.
T Consensus        31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln   60 (491)
T PRK14964         31 LNKIPQSILLVGASGVGKTTCARIISLCLN   60 (491)
T ss_pred             cCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence            344566799999999999999999999884

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.28  E-value=0.00043  Score=63.94  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=36.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA----QGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----~g~~~~~ld~D~i~~   63 (272)
                      +|.+|++.|+.|+||||++..|+..+..    .|..+.+++.|.++.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~  219 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI  219 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence            4789999999999999999999988753    366788888887653

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.27  E-value=0.0021  Score=58.26  Aligned_cols=42  Identities=36%  Similarity=0.401  Sum_probs=36.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ...++|.|++|+|||+++.+++..+-.+|+.+.|++...+..
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~  224 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE  224 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence            367999999999999999999999988898999988766544

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.27  E-value=0.012  Score=59.61  Aligned_cols=30  Identities=37%  Similarity=0.465  Sum_probs=25.6

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++-+..++|.|++|+||||+|+.|++.|.
T Consensus        33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         33 SGRINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             hCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            334455689999999999999999999994

>PTZ00202 tuzin; Provisional

Probab=97.26  E-value=0.001  Score=62.00  Aligned_cols=109  Identities=16%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc---cccccccCCCCHH-HHHHHHHHHHHHHHHHHhC-CC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL---RNGINANLAFSEE-DRNENVRRAAECAKMFAEC-GF   95 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i---~~~l~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-g~   95 (272)
                      .|.+++|+|++|+||||+++.+...+   +...+++|....   ...+...++..+. .....++.+.+.+...... |.
T Consensus       285 ~privvLtG~~G~GKTTLlR~~~~~l---~~~qL~vNprg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~Gr  361 (550)
T PTZ00202        285 HPRIVVFTGFRGCGKSSLCRSAVRKE---GMPAVFVDVRGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGE  361 (550)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhcC---CceEEEECCCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence            45699999999999999999999887   445666665422   1222223332221 1234455665555444443 64


Q ss_pred             e--EEE---cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHH
Q psy17388         96 I--ALC---SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC  135 (272)
Q Consensus        96 ~--VI~---d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~  135 (272)
                      .  +|+   .+.+-.+.+.+.+ .++-+.  ....|.+.+|.|-+
T Consensus       362 tPVLII~lreg~~l~rvyne~v-~la~dr--r~ch~v~evplesl  403 (550)
T PTZ00202        362 TPLLVLKLREGSSLQRVYNEVV-ALACDR--RLCHVVIEVPLESL  403 (550)
T ss_pred             CEEEEEEecCCCcHHHHHHHHH-HHHccc--hhheeeeeehHhhc
Confidence            2  222   2333233444443 333222  34567778877764

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.24  E-value=0.00043  Score=64.84  Aligned_cols=43  Identities=16%  Similarity=0.128  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~i~~   63 (272)
                      ++.+|+|.|++|+||||++..|+..+.  ..|..+.+++.|..+.
T Consensus       220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI  264 (424)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence            356899999999999999999998886  3467899999998653

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.24  E-value=0.0005  Score=63.13  Aligned_cols=42  Identities=21%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cC-CCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA-QG-IPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g-~~~~~ld~D~i~   62 (272)
                      ++.+|+|.|++|+||||++..|+..+.. .| .++.++..|.++
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R  179 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR  179 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence            4779999999999999999999987643 35 467788888775

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.24  E-value=0.0018  Score=55.44  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ------GIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld~D~   60 (272)
                      .++.++.|.|+|||||||++..++......      +..+.|++.+.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~   63 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG   63 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence            367899999999999999999998653211      25778888764

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF05729 NACHT: NACHT domain

Probab=97.23  E-value=0.00029  Score=56.31  Aligned_cols=28  Identities=21%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQG   50 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g   50 (272)
                      ++++|.|.+|+||||+++.++..+...+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            4789999999999999999999886543

>KOG1533|consensus

Probab=97.23  E-value=0.00027  Score=60.08  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=31.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      -+++|||||||||.+.-..+-+.+.|.++..++-|-
T Consensus         5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP   40 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP   40 (290)
T ss_pred             eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence            478999999999999999999998898888777653

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=97.23  E-value=0.0029  Score=55.22  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=33.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D   59 (272)
                      .++.+++|.|.||+||||++..++..+... |.++.|++.+
T Consensus        17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE   57 (259)
T PF03796_consen   17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE   57 (259)
T ss_dssp             -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            467899999999999999999999988776 5889898875

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.23  E-value=0.00037  Score=62.69  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +..|+|.|+||+||||+++.|++.+   |+++..+.
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~   96 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARL---NWPCVRVN   96 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHH---CCCeEEEE
Confidence            4569999999999999999999999   66665443

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.23  E-value=0.00026  Score=53.36  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |+|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999885

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.21  E-value=0.021  Score=54.67  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+..++|+|++|+||||+|+.+++.+.
T Consensus        39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln   68 (507)
T PRK06645         39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVN   68 (507)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            334466899999999999999999999994

>PRK06921 hypothetical protein; Provisional

Probab=97.21  E-value=0.0012  Score=57.98  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D   59 (272)
                      .+..++|.|++|+|||+++.+++..+..+ |+.+.|+...
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~  155 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV  155 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence            45679999999999999999999998776 8888887753

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.20  E-value=0.00037  Score=64.67  Aligned_cols=39  Identities=21%  Similarity=0.260  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.-|+|.|+||+|||++|++++..+   +.+++.++...+
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l  201 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSEL  201 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHH
Confidence            456779999999999999999999998   556666654433

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.20  E-value=0.0006  Score=58.51  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .+|.|+|.+||||||++..|.+.|..+|+++.++.
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK   36 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK   36 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47999999999999999999999988888888775

>TIGR00665 DnaB replicative DNA helicase

Probab=97.19  E-value=0.0033  Score=59.06  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D   59 (272)
                      +++.+++|.|.||+||||++..++..... .|.++.+++.+
T Consensus       193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE  233 (434)
T TIGR00665       193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE  233 (434)
T ss_pred             CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence            46789999999999999999999987653 57788888765

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.19  E-value=0.00097  Score=64.08  Aligned_cols=42  Identities=26%  Similarity=0.461  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+..+++|.||||+||||+|+.|++.|...  +.+.+.+.....
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~~--~~Y~~kg~~~~s  142 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLMERV--PIYVLKANGERS  142 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHHhC--cceeecCCCCCC
Confidence            466799999999999999999999999743  666666544333

>TIGR02012 tigrfam_recA protein RecA

Probab=97.18  E-value=0.00075  Score=60.78  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||+|-.++......|..+.|+|.+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~   93 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH   93 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence            6789999999999999999998887766788899998764

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>KOG2004|consensus

Probab=97.17  E-value=0.00044  Score=67.22  Aligned_cols=40  Identities=28%  Similarity=0.368  Sum_probs=33.2

Q ss_pred             hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         15 DFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        15 ~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ..+...+|+++.|.||||.|||++|+.+|+.|   |..+..++
T Consensus       431 kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFfRfS  470 (906)
T KOG2004|consen  431 KLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFFRFS  470 (906)
T ss_pred             hhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceEEEe
Confidence            34455689999999999999999999999999   55665554

>KOG0738|consensus

Probab=97.17  E-value=0.0047  Score=56.42  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             CCC-eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSN-ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~-~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++| +=|++.||||+|||-+|++++...
T Consensus       242 rrPWkgvLm~GPPGTGKTlLAKAvATEc  269 (491)
T KOG0738|consen  242 RRPWKGVLMVGPPGTGKTLLAKAVATEC  269 (491)
T ss_pred             ccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence            444 568999999999999999999998

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.17  E-value=0.00073  Score=58.05  Aligned_cols=41  Identities=27%  Similarity=0.345  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++++.|.|||||||++.+++.....+|.++.|++.+.
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~   63 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN   63 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence            36789999999999999999999766545677888888754

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.17  E-value=0.00057  Score=61.84  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +.++..++|.|+||+||||+|+.+++.+   +.++.+.+
T Consensus        48 ~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~   83 (328)
T PRK00080         48 GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITS   83 (328)
T ss_pred             CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEe
Confidence            3455688999999999999999999998   54554443

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.17  E-value=0.00041  Score=52.30  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La   43 (272)
                      .++.++.|.|++||||||+++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            356899999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.16  E-value=0.001  Score=56.71  Aligned_cols=36  Identities=25%  Similarity=0.173  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..|..++|.|.||+||||+|+.|+.       +..+++.|..-
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~~-------~~~~~~~d~~~   45 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLPG-------KTLVLSFDMSS   45 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcCC-------CCEEEeccccc
Confidence            3467899999999999999998863       35567766643

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.16  E-value=0.00068  Score=63.37  Aligned_cols=43  Identities=28%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             hhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         12 WLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        12 ~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .++....+.++..++|.|+||+||||+|+.+++.+   +..+..++
T Consensus        26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~   68 (413)
T PRK13342         26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALS   68 (413)
T ss_pred             HHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            35555555666678899999999999999999987   44554444

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.16  E-value=0.00063  Score=60.69  Aligned_cols=34  Identities=26%  Similarity=0.352  Sum_probs=27.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .++..++|+|+||+||||+|+++++.+   +.++..+
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~   61 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKIT   61 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEe
Confidence            345578999999999999999999998   4444443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.15  E-value=0.011  Score=57.80  Aligned_cols=30  Identities=30%  Similarity=0.431  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++-+..++|+|++|+||||+|+.|++.|.
T Consensus        34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln   63 (618)
T PRK14951         34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLN   63 (618)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            334567789999999999999999999994

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.15  E-value=0.02  Score=54.95  Aligned_cols=29  Identities=34%  Similarity=0.416  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++-+..++|+|++|+||||+|+.+++.|.
T Consensus        35 ~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (509)
T PRK14958         35 QYLHHAYLFTGTRGVGKTTISRILAKCLN   63 (509)
T ss_pred             CCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566789999999999999999999994

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.15  E-value=0.00074  Score=56.65  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      +|+|+|++||||||+.++|...+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            7999999999999999999988854

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=97.14  E-value=0.0034  Score=54.21  Aligned_cols=41  Identities=27%  Similarity=0.502  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..++++.|--|+||||++..|+..+..+|.++..+|.|...
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n   43 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN   43 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            34566679999999999999999998889999999999654

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.14  E-value=0.00071  Score=55.52  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i   61 (272)
                      -..++|+|++|+|||.+|++|++.+. ....+...+|.-.+
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~   43 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY   43 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence            35789999999999999999999994 22234555554433

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.14  E-value=0.00034  Score=59.47  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ++|.++|.|||||||+|+.+.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~   23 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN   23 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc
Confidence            47999999999999999999876

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.13  E-value=0.00057  Score=65.51  Aligned_cols=35  Identities=34%  Similarity=0.568  Sum_probs=28.1

Q ss_pred             hhhhhhcCC-CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         12 WLRDFKEGQ-SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        12 ~~r~~~~~~-~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      |+.....+. +..+++|+||+||||||..+.|++.|
T Consensus        34 wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   34 WLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             HHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence            444444333 35799999999999999999999999

>PRK06620 hypothetical protein; Validated

Probab=97.12  E-value=0.0024  Score=54.30  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ..++|.|++||||||+++++++..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhcc
Confidence            568999999999999999988876

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=97.12  E-value=0.0007  Score=59.11  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++++++|.+|+||||++..++..+...|.++..+|.|-
T Consensus         1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~   38 (254)
T cd00550           1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP   38 (254)
T ss_pred             CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence            37899999999999999999999999999999999885

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.11  E-value=0.03  Score=50.84  Aligned_cols=30  Identities=37%  Similarity=0.473  Sum_probs=26.1

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.|..++|.|++|+||||+|+.+++.+.
T Consensus        32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        32 NGRIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345567889999999999999999999984

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.11  E-value=0.026  Score=57.07  Aligned_cols=28  Identities=32%  Similarity=0.402  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+..++|+|++|+||||+|+.+++.|.
T Consensus        36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln   63 (944)
T PRK14949         36 RLHHAYLFTGTRGVGKTSLARLFAKGLN   63 (944)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence            4466789999999999999999999994

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=97.11  E-value=0.0007  Score=57.62  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +++++|.+|+||||++..++..+...|.++.++|.|.-.
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~   39 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH   39 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence            478999999999999999999999999999999988544

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>KOG4235|consensus

Probab=97.11  E-value=0.0023  Score=53.10  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++.+|.|..|+||||.-+-+.+..
T Consensus        23 r~~~iEGNIa~GKsTfl~~~~~~t   46 (244)
T KOG4235|consen   23 RLSIIEGNIAVGKSTFLNFFLNKT   46 (244)
T ss_pred             eeEEEecccccchHHHHHHHHhcc
Confidence            566699999999999999887765

>KOG3078|consensus

Probab=97.10  E-value=0.0056  Score=52.42  Aligned_cols=113  Identities=13%  Similarity=0.131  Sum_probs=60.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHHH--------HHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVRR--------AAECAKMFA   91 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~~--------i~~~~~~~~   91 (272)
                      ++.-.++.|+||+||+|+|..+.+.+     .+.++.+ |.+|..+...-.+.... .+.+.+        +.......+
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~-----~~~hl~tGdllr~~ia~~telg~~~-~~~~~~g~lvpDeiv~~~l~~~l   87 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNF-----GVIHISTGDLLRDEIASGTELGKEA-KEAIDKGKLVPDEVVVRLLEKRL   87 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhc-----CCccchhHHHHHHHHhccCcHHHHH-HHHHHhcCcCcHHHHHHHHHhhc
Confidence            56778999999999999999999998     5555554 44454433221111100 111110        011122222


Q ss_pred             hCC---CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         92 ECG---FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        92 ~~g---~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +.+   ...+.|..-......+.   +.+..-....+|.|.+|.+.+.+|+..|
T Consensus        88 ~~~~~~~~~ildg~Prt~~qa~~---l~~~~~~~d~Vi~l~vp~~~L~~ri~~r  138 (235)
T KOG3078|consen   88 ENPRCQKGFILDGFPRTVQQAEE---LLDRIAQIDLVINLKVPEEVLVDRITGR  138 (235)
T ss_pred             cccccccccccCCCCcchHHHHH---HHHccCCcceEEEecCCHHHHHHHHhcc
Confidence            222   23333432211111122   2222223557899999999999999765

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.09  E-value=0.0006  Score=55.85  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +++|+|++||||||+|..++...   +.++.|+++.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~---~~~~~y~at~   33 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAEL---GGPVTYIATA   33 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEcc
Confidence            47899999999999999998773   5577788654

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.09  E-value=0.00082  Score=52.02  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=29.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGI   51 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~   51 (272)
                      .+.+|.++-+.|.+|+|||.+++.||+.|-..|.
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~   82 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM   82 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence            3468899999999999999999999999855443

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.08  E-value=0.029  Score=55.20  Aligned_cols=29  Identities=31%  Similarity=0.424  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      +-+..++|+|++|+||||+|+.+++.|..
T Consensus        36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         36 RLHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            34556899999999999999999999953

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.08  E-value=0.00072  Score=54.07  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +.=|+|+|+||+||||+|.+|.++
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            456899999999999999988886

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.08  E-value=0.0037  Score=58.23  Aligned_cols=40  Identities=18%  Similarity=0.230  Sum_probs=32.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i   61 (272)
                      ...++|.|++|+|||+++++++..+...  +..+.|++.+.+
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~  177 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF  177 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence            3468999999999999999999988665  567888876554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.08  E-value=0.0023  Score=57.98  Aligned_cols=25  Identities=12%  Similarity=0.211  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ...|+|.|.+|+||||+++.|++.+
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~  186 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVF  186 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999999988

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00071  Score=65.84  Aligned_cols=40  Identities=25%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .....++.+++|.||||+|||++++.+|+.+   |.+++-++-
T Consensus       344 l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sL  383 (782)
T COG0466         344 LTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISL  383 (782)
T ss_pred             HhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEEEec
Confidence            3455688999999999999999999999999   667766553

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.08  E-value=0.024  Score=55.37  Aligned_cols=28  Identities=32%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+..++|+|++|+||||+|+.|++.+.
T Consensus        36 ri~ha~Lf~GPpG~GKTtiArilAk~L~   63 (624)
T PRK14959         36 RVAPAYLFSGTRGVGKTTIARIFAKALN   63 (624)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence            3356799999999999999999999994

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0075  Score=57.44  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+|.++.+.|+||+||||+.+.|.+++-
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~t   94 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT   94 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence            4566677999999999999999999884

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.08  E-value=0.0057  Score=57.81  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i   61 (272)
                      ..++|.|++|+|||+++++++..+...  +..+.|++.+.+
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~  189 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF  189 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence            458999999999999999999998765  566778776554

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.07  E-value=0.0047  Score=58.37  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~~   63 (272)
                      .-++|.|.+|+|||+++++++..+..  .+..+.|+..+.+..
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~  184 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR  184 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence            34899999999999999999997754  356777887766544

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.07  E-value=0.0061  Score=58.18  Aligned_cols=42  Identities=19%  Similarity=0.153  Sum_probs=36.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.+++|.|+||+||||++.+++.....+|.++.|+..++-
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs  302 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES  302 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence            367899999999999999999999988777888888887653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13695 putative NTPase; Provisional

Probab=97.06  E-value=0.00097  Score=54.56  Aligned_cols=31  Identities=26%  Similarity=0.462  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPA   53 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~   53 (272)
                      +.|+|+|.+||||||+++.+...+...|..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~   31 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV   31 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            4689999999999999999998876556553

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.05  E-value=0.011  Score=54.97  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+.-++|+|++|+||||+|+.+++.+.
T Consensus        36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~   63 (397)
T PRK14955         36 RVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (397)
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4455689999999999999999999994

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.05  E-value=0.00077  Score=55.81  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+++++|+|||||||+.+.|.....
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            5789999999999999999999998764

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.05  E-value=0.0059  Score=57.62  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .-++|.|++|+|||+++++++..+...|..+.|++.+.+
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f  180 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF  180 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence            457899999999999999999998777888888887543

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.05  E-value=0.00058  Score=63.25  Aligned_cols=29  Identities=28%  Similarity=0.528  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGI   51 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~   51 (272)
                      .=|++.|+||+||||+|++||+.+..+|.
T Consensus       264 eGILIAG~PGaGKsTFaqAlAefy~~~Gk  292 (604)
T COG1855         264 EGILIAGAPGAGKSTFAQALAEFYASQGK  292 (604)
T ss_pred             cceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence            34899999999999999999999987775

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=97.05  E-value=0.001  Score=54.91  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +.+.++-.|+||||+|..|+..|..+|+++..+|.|.-
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~   38 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQ   38 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCcc
Confidence            45788999999999999999999999999999998853

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.05  E-value=0.0012  Score=59.46  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=35.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||+|-.++......|..+.|+|.+.
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~   93 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH   93 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence            6789999999999999999999887766777899999754

RecA couples ATP hydrolysis to DNA strand exchange.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.04  E-value=0.0011  Score=54.69  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +++|+|+.||||||+.+.|.+ ....|.++.++-.|
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne   36 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNE   36 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECS
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcc
Confidence            789999999999999999997 44456677666544

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.04  E-value=0.00071  Score=63.11  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ...|+|.|+||+||||+|+.|++.+   +.++..+|...
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~id~~~  143 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARIL---DVPFAIADATT  143 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHh---CCCceecchhh
Confidence            3569999999999999999999998   55666666543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.00054  Score=58.69  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|..+.|.|.|||||||+++.|+-.... ..+.+.+++..+
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~   71 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPL   71 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCccc
Confidence            47889999999999999999999976532 224556776433

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.04  E-value=0.001  Score=45.01  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.+.+|+|..||||||+-.++.-.|
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998877

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.03  E-value=0.00094  Score=57.93  Aligned_cols=40  Identities=20%  Similarity=0.402  Sum_probs=34.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..++|.|.+|+|||+++.+++..+...|..+.+++..++.
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~  139 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM  139 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence            4689999999999999999999998888888888765444

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.03  E-value=0.031  Score=54.43  Aligned_cols=30  Identities=27%  Similarity=0.362  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ++.+..++|+|++|+||||+|+.+++.+.+
T Consensus        35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            345667899999999999999999999953

>PRK10646 ADP-binding protein; Provisional

Probab=97.03  E-value=0.00071  Score=54.33  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +++.+|+|.|.-||||||++|.+++.|
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~L   52 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQAL   52 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            567899999999999999999999999

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.03  E-value=0.0023  Score=59.47  Aligned_cols=27  Identities=11%  Similarity=0.134  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .-...|+|+|.+||||||++++|++.+
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345789999999999999999999998

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.02  E-value=0.0011  Score=63.25  Aligned_cols=43  Identities=23%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i~~   63 (272)
                      ++.+|.|+|++|+||||++..|+..+...  +.++.+++.|..+.
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi  393 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV  393 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            57899999999999999999999877543  35688888887653

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.02  E-value=0.001  Score=56.58  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC------CCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG------IPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g------~~~~~ld~D~   60 (272)
                      .++.++.|.|+||+|||+++..++......+      ..+.|++++.
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            4678999999999999999999987754344      6788888764

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.01  E-value=0.051  Score=53.39  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+--++|+|++|+||||+|+.+++.+.
T Consensus        36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~   63 (620)
T PRK14954         36 RVGHGYIFSGLRGVGKTTAARVFAKAVN   63 (620)
T ss_pred             CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4456699999999999999999999993

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.01  E-value=0.00069  Score=56.19  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+++|+|++||||||+.++|...++
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4567999999999999999999998875

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=97.00  E-value=0.0012  Score=53.74  Aligned_cols=39  Identities=23%  Similarity=0.351  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +.+.++-.|+||||+|..|+..+...|.++..+|.|.-+
T Consensus         2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~   40 (169)
T cd02037           2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG   40 (169)
T ss_pred             EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            457789999999999999999999899999999999644

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=97.00  E-value=0.0012  Score=55.78  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +|.+.|-.|+||||++--|+..|...|.++..+|.|.-
T Consensus         2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q   39 (212)
T cd02117           2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK   39 (212)
T ss_pred             EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            57888999999999999999999999999999999854

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=96.99  E-value=0.014  Score=57.02  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+.-++|+|++|+||||+|+.|++.|.
T Consensus        42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~   71 (598)
T PRK09111         42 TGRIAQAFMLTGVRGVGKTTTARILARALN   71 (598)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence            344566799999999999999999999994

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.98  E-value=0.00053  Score=53.27  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L   46 (272)
                      |+|.|.||.||||++++|++.+
T Consensus         2 vLleg~PG~GKT~la~~lA~~~   23 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSL   23 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHT
T ss_pred             EeeECCCccHHHHHHHHHHHHc
Confidence            7899999999999999999998

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=96.98  E-value=0.0009  Score=62.28  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ..|+|.|+||+|||++|++|++.+   +.++..++.-
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l---~~pf~~~da~  150 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARIL---NVPFAIADAT  150 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhc---CCCeEEechh
Confidence            579999999999999999999988   5566555543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.98  E-value=0.022  Score=55.00  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.+..++|+|++|+||||+|+.+++.+.
T Consensus        35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   63 (527)
T PRK14969         35 QRLHHAYLFTGTRGVGKTTLARILAKSLN   63 (527)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566789999999999999999999994

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=96.98  E-value=0.00068  Score=64.88  Aligned_cols=39  Identities=23%  Similarity=0.489  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ...|.-++|.|+||+|||++|++++..+   +.+++.++...
T Consensus        85 ~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~  123 (495)
T TIGR01241        85 AKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSD  123 (495)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHH
Confidence            3456679999999999999999999887   66776666443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.97  E-value=0.0016  Score=54.10  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             CCC-eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSN-ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~-~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+| ..|-+.|+|||||||+...+-+.|... ++...+-.|.+
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~   51 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIY   51 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceee
Confidence            344 789999999999999999999888654 67777776654

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.97  E-value=0.01  Score=52.22  Aligned_cols=42  Identities=17%  Similarity=0.157  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ++..|.|.|++|+||||+++.|+..+...+..+.+++.|..+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            457999999999999999999999887667778888888765

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=96.96  E-value=0.0076  Score=56.45  Aligned_cols=40  Identities=15%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D   59 (272)
                      +++.+++|.|.||+||||++-.++..+. ..|.++.+++.+
T Consensus       192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE  232 (421)
T TIGR03600       192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE  232 (421)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            4678999999999999999999997775 468888888865

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.96  E-value=0.0012  Score=57.63  Aligned_cols=43  Identities=26%  Similarity=0.414  Sum_probs=36.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ++..++|.|+||+|||.+|-+++..+...|+.+.++..-++..
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~  146 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS  146 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            5678999999999999999999999987788988887654443

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.96  E-value=0.0015  Score=54.66  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ...+.++.|++|+||||+.+.+.+.+...|.++..+.
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a   53 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA   53 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence            4468899999999999999999999988887776664

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=96.95  E-value=0.0014  Score=57.50  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|.+.|--|+||||++--|+..|..+|.++..+|.|-
T Consensus         1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp   38 (267)
T cd02032           1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP   38 (267)
T ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46888899999999999999999999999999999984

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.95  E-value=0.0027  Score=55.27  Aligned_cols=29  Identities=21%  Similarity=0.125  Sum_probs=25.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      .+|..+.|.|++|+||||+++.+...+..
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            46778999999999999999999998743

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.95  E-value=0.0014  Score=62.16  Aligned_cols=42  Identities=21%  Similarity=0.325  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cC-CCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA-QG-IPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g-~~~~~ld~D~i~   62 (272)
                      +|.+|.|.|+.|+||||++..|+..+.. +| ..+.+++.|..+
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R  298 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR  298 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence            4679999999999999999999988743 44 367788888754

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.94  E-value=0.0017  Score=58.34  Aligned_cols=42  Identities=21%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+.-++|.|++|+|||+++.+++..+..+|+.+.++....+.
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~  196 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI  196 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence            345799999999999999999999998889888887655443

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.94  E-value=0.0012  Score=61.99  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+|.-++|.|+||+|||++|++++..+   +.+++.++.
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~  250 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVG  250 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEec
Confidence            466778999999999999999999988   445554443

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.94  E-value=0.0015  Score=60.09  Aligned_cols=40  Identities=23%  Similarity=0.424  Sum_probs=35.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.+++|.|.||+||||++.+++..+...|.++.|++.+.
T Consensus        81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE  120 (372)
T cd01121          81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE  120 (372)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            6789999999999999999999988876667888888764

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.94  E-value=0.0029  Score=60.46  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +|.-|+|.|+||+|||++|++++..+.
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~  241 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLA  241 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence            466799999999999999999999984

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.94  E-value=0.0015  Score=55.80  Aligned_cols=38  Identities=26%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~   60 (272)
                      +.|.|+|-=|+||||+|..|+.++..++ +++..+|.|.
T Consensus         1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp   39 (255)
T COG3640           1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP   39 (255)
T ss_pred             CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence            3689999999999999999787777765 8999999996

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.94  E-value=0.0011  Score=61.73  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .+|.-|+|.|+||+|||++|++++..+   +.++..+.
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~  211 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVV  211 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEe
Confidence            467789999999999999999999987   44555443

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.93  E-value=0.0018  Score=54.61  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      -+..+.+.+|.|+|++||||||+...+.+.+.. +..+.++..|.
T Consensus        16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~   59 (207)
T TIGR00073        16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDV   59 (207)
T ss_pred             HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCC
Confidence            334456789999999999999999999988642 33555565553

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00416 sms DNA repair protein RadA

Probab=96.92  E-value=0.0016  Score=61.60  Aligned_cols=42  Identities=19%  Similarity=0.346  Sum_probs=36.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.+++|.|.||+||||++.+++..+...|.++.|++.++-
T Consensus        92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs  133 (454)
T TIGR00416        92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES  133 (454)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence            367899999999999999999999888766778889987654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PHA02244 ATPase-like protein

Probab=96.91  E-value=0.001  Score=60.76  Aligned_cols=35  Identities=31%  Similarity=0.506  Sum_probs=29.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ..+..|+|.|++|+||||+|++++..+   |.+++.++
T Consensus       117 ~~~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In  151 (383)
T PHA02244        117 NANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMN  151 (383)
T ss_pred             hcCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence            344558899999999999999999998   66776665

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.91  E-value=0.00084  Score=57.31  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+|.++.|.|+|||||||+-..++-.... .-..+++++
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g   66 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLING   66 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECC
Confidence            57889999999999999999999865532 113344554

>COG3911 Predicted ATPase [General function prediction only]

Probab=96.90  E-value=0.00096  Score=52.98  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+.+|+|.||+||||+-++|+++
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~   32 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARA   32 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHc
Confidence            68899999999999999999987

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.90  E-value=0.0011  Score=60.79  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.-++|.|+||+||||+|++++..+
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l  180 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHET  180 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhC
Confidence            356779999999999999999999988

Many proteins may score above the trusted cutoff because an internal

>TIGR00101 ureG urease accessory protein UreG

Probab=96.90  E-value=0.0015  Score=54.92  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      |..|.|+|++||||||+.+.+.+.+... .++.++..|.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~   38 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDI   38 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCc
Confidence            5689999999999999999999887432 2344555443

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.89  E-value=0.0018  Score=52.71  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +.+.++..|+||||++..|+..+..+|.++..+|.|.-
T Consensus         2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~   39 (179)
T cd02036           2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG   39 (179)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            56788899999999999999999999999999999854

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.89  E-value=0.01  Score=50.58  Aligned_cols=113  Identities=19%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCcccccccc-----------------c------cCCCCHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLRNGIN-----------------A------NLAFSEEDRN   77 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~~~l~-----------------~------~~~~~~~~~~   77 (272)
                      ..++|.|++|+|||++.++++..+..  .+..+.|++.+.+...+.                 .      +...- ....
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l-~~~~  113 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL-AGKQ  113 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG-TTHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh-cCch
Confidence            35799999999999999999988765  366788888665432110                 0      11000 1122


Q ss_pred             HHHHHHHHHHHHHHhCCCe-EEEcCCCCc--HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh
Q psy17388         78 ENVRRAAECAKMFAECGFI-ALCSFVSPT--AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV  140 (272)
Q Consensus        78 ~~~~~i~~~~~~~~~~g~~-VI~d~~~~~--~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~  140 (272)
                      .+.+.+..+...+.++|.. |+++...|.  ......++..+. .|   .++-|..|.+..+.++.
T Consensus       114 ~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~-~G---l~~~l~~pd~~~r~~il  175 (219)
T PF00308_consen  114 RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS-WG---LVVELQPPDDEDRRRIL  175 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH-CS---EEEEE----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh-hc---chhhcCCCCHHHHHHHH
Confidence            3334445555566666654 444433332  112334444443 23   66778777766666653

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=96.89  E-value=0.051  Score=51.43  Aligned_cols=29  Identities=28%  Similarity=0.478  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++-+..++|.|++|+||||+|+.+++.+.
T Consensus        36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~   64 (451)
T PRK06305         36 NRAAHAYLFSGIRGTGKTTLARIFAKALN   64 (451)
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34567789999999999999999999984

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.88  E-value=0.0015  Score=60.36  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=33.5

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEecCc
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQG--IPAYALDGD   59 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g--~~~~~ld~D   59 (272)
                      ..+..+..++|.|+||+||||+++.+.+.+...+  +.+.+++..
T Consensus        50 ~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~   94 (394)
T PRK00411         50 LRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ   94 (394)
T ss_pred             hCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence            3345666789999999999999999999886543  556677654

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.87  E-value=0.0022  Score=54.63  Aligned_cols=40  Identities=23%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.+++|.|.||+|||++|..++......|.++.|++.+.
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~   54 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE   54 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            5789999999999999999999876545677888888764

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.87  E-value=0.0018  Score=61.09  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++.+++|.|.||+||||++.+++..+...|.++.|++.++-
T Consensus        79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees  119 (446)
T PRK11823         79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES  119 (446)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence            67899999999999999999999988766778899987653

>PRK06851 hypothetical protein; Provisional

Probab=96.86  E-value=0.0017  Score=59.46  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAY   54 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~   54 (272)
                      ...+++|+|+||+||||+.+++.+.+...|+.+.
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve   62 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVE   62 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            4578999999999999999999999987777654

>PRK09354 recA recombinase A; Provisional

Probab=96.85  E-value=0.0023  Score=58.27  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|++||||||+|-.+.......|..+.|+|...
T Consensus        59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~   98 (349)
T PRK09354         59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH   98 (349)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence            6789999999999999999998877666788899999764

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.85  E-value=0.0018  Score=53.49  Aligned_cols=39  Identities=21%  Similarity=0.295  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA----------QGIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----------~g~~~~~ld~D   59 (272)
                      ++.+++|.|++|+||||++..++..+..          .+.++.|++.+
T Consensus        31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E   79 (193)
T PF13481_consen   31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE   79 (193)
T ss_dssp             TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence            5678999999999999999999988753          23456666654

>KOG0730|consensus

Probab=96.85  E-value=0.0014  Score=63.24  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|+=|++.||||+||||+|++++..-   +.++..+.+-++..
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~s  506 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFS  506 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHH
Confidence            466779999999999999999999987   66777776655543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.84  E-value=0.00088  Score=52.23  Aligned_cols=41  Identities=15%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.|+...... ...+.++...+
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~-~G~i~~~~~~~   49 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPD-SGSILINGKDI   49 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSHES-EEEEEETTEEG
T ss_pred             cCCCEEEEEccCCCccccceeeeccccccc-ccccccccccc
Confidence            367899999999999999999999876421 12344554433

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=96.83  E-value=0.0054  Score=59.64  Aligned_cols=39  Identities=26%  Similarity=0.324  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i   61 (272)
                      ..++|.|.+|+|||+++.+++..+..  .|..+.|+..+.+
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef  355 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF  355 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            34899999999999999999998864  3677888887654

>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2

Probab=96.83  E-value=0.012  Score=47.41  Aligned_cols=65  Identities=14%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             EEEEEeCCHHHHHHhhhhhhhhhhhhcccccc-------cccccc--CCC--CCCCcEEEeCCCCCHHHHHHHHHH
Q psy17388        124 FEVFVNTPVEICEQRDVKGHYKKAREGKIKSF-------TGVSQP--YEA--PKNPDLILETVNVPVEKCANSVLD  188 (272)
Q Consensus       124 ~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~-------~~~~~~--ye~--~~~~~~~Idt~~~~~ee~~~~I~~  188 (272)
                      +.|||+|+++++.+|..+.+........+...       ...+..  ..+  +...-+.|||++++++|++++|++
T Consensus        82 ~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~il~  157 (157)
T PF02224_consen   82 LKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKILE  157 (157)
T ss_dssp             EEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHHhC
Confidence            78999999999999975543222111111110       001111  111  223349999999999999999874

7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....

>PRK05595 replicative DNA helicase; Provisional

Probab=96.83  E-value=0.015  Score=54.82  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D   59 (272)
                      +++.+|+|.|.||+||||++-.++..+. ..|.++.+++.+
T Consensus       199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE  239 (444)
T PRK05595        199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE  239 (444)
T ss_pred             CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence            4678999999999999999999998654 357788888764

>TIGR01287 nifH nitrogenase iron protein

Probab=96.82  E-value=0.0019  Score=56.86  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .|.+.|--|+||||++--|+..|...|+++..+|.|.
T Consensus         2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~   38 (275)
T TIGR01287         2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDP   38 (275)
T ss_pred             eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6888899999999999999999999999999999984

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.0011  Score=57.06  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+|.++.|.|+|||||||+-+.++-...... ..+.+++..
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~-G~V~~~g~~   66 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTS-GEVLLDGRP   66 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCcc
Confidence            5789999999999999999999997653221 234555543

>PRK05748 replicative DNA helicase; Provisional

Probab=96.81  E-value=0.013  Score=55.34  Aligned_cols=40  Identities=15%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D   59 (272)
                      +++.+|+|.|.||+||||++-.++.... ..|.++.+++.+
T Consensus       201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE  241 (448)
T PRK05748        201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE  241 (448)
T ss_pred             CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4678999999999999999999998764 347788787754

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.80  E-value=0.042  Score=53.65  Aligned_cols=30  Identities=33%  Similarity=0.465  Sum_probs=25.9

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++-+..++|+|++|+||||+|+.|++.+.
T Consensus        34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~   63 (576)
T PRK14965         34 TGRVAHAFLFTGARGVGKTSTARILAKALN   63 (576)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence            334567789999999999999999999984

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.80  E-value=0.0012  Score=54.83  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998765

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.80  E-value=0.0013  Score=57.35  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++.++.|.|+.||||||+-|.|+..+.... +.+++|+..+.
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~-G~V~l~g~~i~   67 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKS-GEVLLDGKDIA   67 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCCCCC-CEEEECCCchh
Confidence            4688999999999999999999999885322 35677775543

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=96.80  E-value=0.0021  Score=56.14  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++|.+.|--|+||||++-.|+..|...|.++..+|.|.-
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq   40 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK   40 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence            357777999999999999999999999999999999853

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.78  E-value=0.0012  Score=55.95  Aligned_cols=27  Identities=26%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999999765

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=96.78  E-value=0.032  Score=55.43  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +-+..++|+|++|+||||+|+.+++.+.
T Consensus        38 rl~HAYLF~GP~GtGKTt~AriLAk~Ln   65 (725)
T PRK07133         38 KISHAYLFSGPRGTGKTSVAKIFANALN   65 (725)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            4466789999999999999999999984

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=96.78  E-value=0.00042  Score=55.28  Aligned_cols=81  Identities=14%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             HHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccc-ccCCC----C-CCCcEEEeCCCCCHHHH
Q psy17388        110 DRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVS-QPYEA----P-KNPDLILETVNVPVEKC  182 (272)
Q Consensus       110 ~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~-~~ye~----~-~~~~~~Idt~~~~~ee~  182 (272)
                      .....+...... |.++|||++|++++.+|+.+|.+.-...-....+..+. +.|+.    . ..+-++||++..+..+.
T Consensus        55 ~~~~~l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~  134 (146)
T PF01712_consen   55 KLFDELIEEIPKSPDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVEN  134 (146)
T ss_dssp             HHHHHHHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSH
T ss_pred             HHHHHHHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccC
Confidence            333444455555 67899999999999999988754322211112233344 44443    2 34568999887666665


Q ss_pred             HHHHHHHH
Q psy17388        183 ANSVLDMI  190 (272)
Q Consensus       183 ~~~I~~~L  190 (272)
                      .+.+...+
T Consensus       135 ~~~~~~~~  142 (146)
T PF01712_consen  135 PEDIEQVI  142 (146)
T ss_dssp             HTTHHHHH
T ss_pred             HHHHHHHH
Confidence            55554443

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>CHL00176 ftsH cell division protein; Validated

Probab=96.77  E-value=0.0015  Score=64.19  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..|.-|+|.|+||+|||++|++++..+   +.+++.++...+
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f  252 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEF  252 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHH
Confidence            456779999999999999999999987   667776665433

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.77  E-value=0.0013  Score=55.41  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999999765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK06851 hypothetical protein; Provisional

Probab=96.76  E-value=0.0022  Score=58.80  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .++++|+|.||+||||+.+.+++.+..+|..+.++
T Consensus       214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~  248 (367)
T PRK06851        214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVY  248 (367)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence            46899999999999999999999998888876543

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.75  E-value=0.0013  Score=55.37  Aligned_cols=27  Identities=26%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999999765

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.75  E-value=0.0013  Score=55.51  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999999765

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.75  E-value=0.0015  Score=51.91  Aligned_cols=28  Identities=32%  Similarity=0.334  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+|++.|.-||||||++|.+++.|.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            5788999999999999999999999994

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.73  E-value=0.016  Score=55.32  Aligned_cols=40  Identities=28%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D~   60 (272)
                      ++.+++|+|+|||||||+|.++... +...|.++.|+..++
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE   60 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE   60 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            6789999999999999999998654 322367888887653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.73  E-value=0.0014  Score=55.55  Aligned_cols=28  Identities=18%  Similarity=0.207  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999997763

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.73  E-value=0.0014  Score=55.58  Aligned_cols=28  Identities=29%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999987653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.73  E-value=0.0014  Score=55.39  Aligned_cols=27  Identities=33%  Similarity=0.421  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999998765

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13764 ATPase; Provisional

Probab=96.73  E-value=0.0021  Score=62.48  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      ...|+++|++||||||++++|...+...+..+..+
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~Ti  291 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTM  291 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence            45699999999999999999999997666544333

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.72  E-value=0.0014  Score=55.53  Aligned_cols=27  Identities=26%  Similarity=0.225  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999999765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.72  E-value=0.0014  Score=56.25  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999999765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.71  E-value=0.016  Score=54.62  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i   61 (272)
                      ..++|.|++|+|||+++++++..+...  +..+.|++.+.+
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f  171 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence            459999999999999999999987653  456778776553

>PRK05636 replicative DNA helicase; Provisional

Probab=96.71  E-value=0.016  Score=55.52  Aligned_cols=40  Identities=8%  Similarity=0.200  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D   59 (272)
                      +++.+|+|.|.||+||||++-.++.... ..|.++.+++.+
T Consensus       263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE  303 (505)
T PRK05636        263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE  303 (505)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence            5688999999999999999999987654 246677777644

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.70  E-value=0.0015  Score=55.13  Aligned_cols=28  Identities=29%  Similarity=0.287  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999997653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.70  E-value=0.067  Score=52.36  Aligned_cols=29  Identities=31%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.+..++|+|++|+||||+|+.+++.+.
T Consensus        35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         35 GRVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566789999999999999999999984

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.70  E-value=0.0015  Score=53.88  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La   43 (272)
                      .++.++.|.|++||||||+.+.+.
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            578899999999999999999884

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK12608 transcription termination factor Rho; Provisional

Probab=96.70  E-value=0.0081  Score=55.08  Aligned_cols=30  Identities=27%  Similarity=0.150  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ   49 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~   49 (272)
                      .+|.-+.|+|++|+||||+++.+++.+...
T Consensus       131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~  160 (380)
T PRK12608        131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN  160 (380)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            366678999999999999999999988643

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.70  E-value=0.0016  Score=53.28  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998765

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.69  E-value=0.024  Score=52.27  Aligned_cols=45  Identities=18%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCcccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDNLRNG   64 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~i~~~   64 (272)
                      .++.+|.|.||.|+||||.-..||.++.  ....++.++..|.+|=+
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG  247 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG  247 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence            3578999999999999998888988876  33456888889988743

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.69  E-value=0.0015  Score=56.16  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            478899999999999999999999765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.69  E-value=0.0016  Score=55.60  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            478899999999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.68  E-value=0.0014  Score=55.31  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            478899999999999999999998765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.68  E-value=0.0015  Score=59.09  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..|.+++|.||+||||||+-|.+|-...-.+ +-.++++..+
T Consensus        27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~-G~I~i~g~~v   67 (338)
T COG3839          27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS-GEILIDGRDV   67 (338)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEC
Confidence            4678999999999999999999996543222 2345665443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.67  E-value=0.0016  Score=56.18  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.67  E-value=0.0016  Score=54.86  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999999765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.67  E-value=0.0016  Score=54.70  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.67  E-value=0.0015  Score=55.41  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999999765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.66  E-value=0.0015  Score=56.00  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            478899999999999999999999765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.66  E-value=0.0016  Score=55.77  Aligned_cols=27  Identities=19%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999999765

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.66  E-value=0.0017  Score=54.10  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999998653

>PRK08760 replicative DNA helicase; Provisional

Probab=96.65  E-value=0.015  Score=55.41  Aligned_cols=40  Identities=15%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D   59 (272)
                      +++.+|+|.|.||+||||++-.++..... .|.++.+++.+
T Consensus       227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE  267 (476)
T PRK08760        227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME  267 (476)
T ss_pred             CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence            46789999999999999999999987643 47778777754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.65  E-value=0.0017  Score=55.09  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+..+.
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999997653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.65  E-value=0.0017  Score=53.62  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=43.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      .++.++.|.|++||||||+.+.|+-.+.... ..+.+++..+.. ......++.-     .++...+++.+.....+++.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~-~~q~~~LSgG-----q~qrv~laral~~~p~lllL   95 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGITPVY-KPQYIDLSGG-----ELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCC-cEEEECCEEEEE-EcccCCCCHH-----HHHHHHHHHHHhcCCCEEEE
Confidence            4678999999999999999999997653211 223344322111 0011112211     12233456677777777776


Q ss_pred             cC
Q psy17388        100 SF  101 (272)
Q Consensus       100 d~  101 (272)
                      |-
T Consensus        96 DE   97 (177)
T cd03222          96 DE   97 (177)
T ss_pred             EC
Confidence            63

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.64  E-value=0.002  Score=64.56  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+|..|+|.|+||+||||++++++..+   +.+++.++..
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~---~~~~i~i~~~  246 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEA---GAYFISINGP  246 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEecH
Confidence            456789999999999999999999988   5566666653

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=96.64  E-value=0.0038  Score=54.74  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +++|.+.|--|+||||++--|+..|...|.++..+|.|-
T Consensus         2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp   40 (270)
T PRK13185          2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP   40 (270)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence            467888899999999999999999999999999999984

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.64  E-value=0.0018  Score=52.64  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999997753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=96.64  E-value=0.0023  Score=63.71  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=27.6

Q ss_pred             hhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         12 WLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        12 ~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|....+.+...++|.|+||+||||+|+++++.+
T Consensus        42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~   76 (725)
T PRK13341         42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT   76 (725)
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34444444555567999999999999999999987

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=96.64  E-value=0.0033  Score=56.41  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|+++|.=|+||||+|.+++-.+..+|.++..++.|-
T Consensus         2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp   39 (305)
T PF02374_consen    2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDP   39 (305)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence            58999999999999999999999999999999988875

...

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.63  E-value=0.0016  Score=54.82  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++ ++.|.|++||||||+.+.|+-.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            57 89999999999999999999765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09165 replicative DNA helicase; Provisional

Probab=96.63  E-value=0.017  Score=55.38  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +++.+|+|.|.||+||||++-.++....
T Consensus       215 ~~g~livIaarpg~GKT~~al~ia~~~a  242 (497)
T PRK09165        215 HPSDLIILAGRPSMGKTALATNIAFNAA  242 (497)
T ss_pred             CCCceEEEEeCCCCChHHHHHHHHHHHH
Confidence            4678999999999999999988887654

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0086  Score=53.44  Aligned_cols=53  Identities=23%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA   83 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i   83 (272)
                      ..|++.||.|||||-+|+-||+.|   +.++..-|.-.+-     +.+|-.++-+..+.++
T Consensus        98 SNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADATtLT-----EAGYVGEDVENillkL  150 (408)
T COG1219          98 SNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADATTLT-----EAGYVGEDVENILLKL  150 (408)
T ss_pred             ccEEEECCCCCcHHHHHHHHHHHh---CCCeeeccccchh-----hccccchhHHHHHHHH
Confidence            469999999999999999999999   5555555543332     2345444434444443

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.63  E-value=0.0018  Score=54.30  Aligned_cols=27  Identities=22%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999999765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.63  E-value=0.0018  Score=55.45  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+..+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.62  E-value=0.0018  Score=54.92  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999999765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.62  E-value=0.049  Score=49.98  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ++.+..++|.|++|+||||+|+++++.+..
T Consensus        36 ~~~~~~~L~~G~~G~GKt~~a~~la~~l~~   65 (367)
T PRK14970         36 NHLAQALLFCGPRGVGKTTCARILARKINQ   65 (367)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            455678999999999999999999999843

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.62  E-value=0.031  Score=55.15  Aligned_cols=29  Identities=31%  Similarity=0.454  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.+..++|+|++|+||||+|+.|++.|.
T Consensus        35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln   63 (709)
T PRK08691         35 GRLHHAYLLTGTRGVGKTTIARILAKSLN   63 (709)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence            34467899999999999999999999984

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.62  E-value=0.0019  Score=54.50  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+.+.|+-.+...+ .-+.+++..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~v~~~g~~   63 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS-GRIYIGGRD   63 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEE
Confidence            4788999999999999999999998763221 234455433

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.62  E-value=0.12  Score=50.82  Aligned_cols=27  Identities=33%  Similarity=0.361  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      -+.-++|+|++|+||||+|+.+++.|.
T Consensus        37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~   63 (620)
T PRK14948         37 IAPAYLFTGPRGTGKTSSARILAKSLN   63 (620)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhc
Confidence            345689999999999999999999994

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.62  E-value=0.0018  Score=53.90  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++.++.|.|++||||||+.+.|+-.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.61  E-value=0.0016  Score=62.10  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+|.++.|.|.|||||||+||.|+..+...+ ....+++.
T Consensus       315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~-G~i~~~g~  353 (539)
T COG1123         315 REGETLGLVGESGSGKSTLARILAGLLPPSS-GSIIFDGQ  353 (539)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEEeCc
Confidence            4788999999999999999999998875433 23344443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.61  E-value=0.002  Score=52.97  Aligned_cols=28  Identities=21%  Similarity=0.248  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+..+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=96.61  E-value=0.0032  Score=56.28  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +|.|.|-.|+||||++-.|+..|..+|.++..+|.|-
T Consensus         2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp   38 (296)
T TIGR02016         2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP   38 (296)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence            5667799999999999999999999999999999884

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.60  E-value=0.002  Score=52.92  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999997653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00763 lon ATP-dependent protease La

Probab=96.60  E-value=0.003  Score=63.75  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .++..++|.|+||+||||+|++|++.+   +.+++.++
T Consensus       345 ~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~  379 (775)
T TIGR00763       345 MKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFS  379 (775)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEEEe
Confidence            355689999999999999999999998   55666554

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.60  E-value=0.0026  Score=55.77  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ...+|+|+|++||||||+.++|.+.++..+..++.+.
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE  162 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE  162 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred             cceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence            3579999999999999999999998875533444444

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK08506 replicative DNA helicase; Provisional

Probab=96.60  E-value=0.028  Score=53.55  Aligned_cols=40  Identities=10%  Similarity=0.133  Sum_probs=34.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +++.+|+|.|.||.||||++-.++......|.++.+++.+
T Consensus       190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE  229 (472)
T PRK08506        190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE  229 (472)
T ss_pred             CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence            4678999999999999999999998776667788888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	272
1x6v_B	630	The Crystal Structure Of Human 3'-Phosphoadenosine-		4e-74
2ofx_A	207	Crystal Structure Of The Apsk Domain Of Human Papss		2e-53
2ofw_A	208	Crystal Structure Of The Apsk Domain Of Human Papss		4e-53
2pey_A	179	Crystal Strucutre Of Deletion Mutant Of Aps-Kinase		2e-52
2ax4_A	198	Crystal Structure Of The Kinase Domain Of Human 3'-		4e-51
1d6j_A	211	Crystal Structure Of Adenosine 5'-Phosphosulfate (A		2e-47
3cr7_A	197	Crystal Structure Of N-Terminal Truncation Of Aps K		2e-47
3uie_A	200	Crystal Structure Of Adenosine 5'-Phosphosulfate Ki		6e-35
2gks_A	546	Crystal Structure Of The Bi-Functional Atp Sulfuryl		7e-33
2yvu_A	186	Crystal Structure Of Ape1195 Length = 186		3e-30
3cr8_A	552	Hexameric Aps Kinase From Thiobacillus Denitrifican		7e-26
1m8p_A	573	Crystal Structure Of P. Chrysogenum Atp Sulfurylase		7e-19
1i2d_A	573	Crystal Structure Of Atp Sulfurylase From Penicilli		8e-19
2qjf_A	405	Crystal Structure Of Atp-Sulfurylase Domain Of Huma		7e-17

>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'- Phosphosulfate Synthetase 1 Length = 630

Iteration: 1
 Score =  274 bits (701), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 176/263 (66%), Gaps = 19/263 (7%)
Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct: 59  GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118
Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct: 119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178
Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFI---- 204
            G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P    + +    
Sbjct: 179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKELY 238
Query: 205 -------------EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT-LD 250
                        E LP L I  +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+  LD
Sbjct: 239 VPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLD 298
Query: 251 SNV-NQSVAIVLAVTGEDKQRLE 272
             V N SV IVL  T EDK+RL+
Sbjct: 299 GGVINLSVPIVLTATHEDKERLD 321

>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In Complex With Adpmg And Paps Length = 207

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 122/171 (71%)
Query: 27  FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAEC 86
             GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE 
Sbjct: 37  LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 96
Query: 87  AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146
           AK+FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKK
Sbjct: 97  AKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK 156
Query: 147 AREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
           AR G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P
Sbjct: 157 ARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 207

>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 Complexed With 2 Aps Molecules Length = 208

Iteration: 1
 Score =  204 bits (520), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 123/173 (71%)
Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
           +   GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR A
Sbjct: 36  IWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIA 95
Query: 85  ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
           E AK+FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG Y
Sbjct: 96  EVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLY 155
Query: 145 KKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
           KKAR G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++P
Sbjct: 156 KKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 208

>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain Of Human Paps-Synthetase 1 Length = 179

Iteration: 1
 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 121/170 (71%)
Query: 27  FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAEC 86
             GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR ENVRR AE 
Sbjct: 10  LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 69
Query: 87  AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146
           AK+FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQRDVKG YKK
Sbjct: 70  AKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK 129
Query: 147 AREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           AR G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++
Sbjct: 130 ARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV 179

>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'- Phosphoadenosine 5'-Phosphosulphate Synthetase 2 Length = 198

Iteration: 1
 Score =  197 bits (502), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 123/169 (72%)
Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           GLSGAGKT+ISF +E YL++  IP Y+LDGDN+R+G+N NL FS  DR EN+RR AE AK
Sbjct: 29  GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAK 88
Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
           +FA+ G + + SF+SP A  R+ AR+IH +A L FFE+FV+ P+ ICE RDVKG YK+AR
Sbjct: 89  LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRAR 148
Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
            G+IK FTG+   YE P+ P+ +L+T    V  C + V++++  + ++P
Sbjct: 149 AGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNIVP 197

>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps) Kinase From Penicillium Chrysogenum Length = 211

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNE 78
           Q  + +   GLS +GK++++ ++E  L+  + + AY LDGDN+R G+N +L FSE DRNE
Sbjct: 23  QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 82
Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNAN------LEFFEVFVNTPV 132
           N+RR AE AK+FA+   IA+ SF+SP    RD AR++H  A       L F EV+V+ PV
Sbjct: 83  NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPV 142
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
           E+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++   +PV+     ++D +  
Sbjct: 143 EVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202
Query: 193 KGLIPARQ 200
           KG +PA++
Sbjct: 203 KGYLPAKK 210

>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase From Penicillium Chrysogenum: Ternary Structure With Adp And Paps Length = 197

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNE 78
           Q  + +   GLS +GK++++ ++E  L+  + + AY LDGDN+R G+N +L FSE DRNE
Sbjct: 1   QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNAN------LEFFEVFVNTPV 132
           N+RR AE AK+FA+   IA+ SF+SP    RD AR++H  A       L F EV+V+ PV
Sbjct: 61  NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPV 120
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
           E+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++   +PV+     ++D +  
Sbjct: 121 EVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 180
Query: 193 KGLIPARQ 200
           KG +PA++
Sbjct: 181 KGYLPAKK 188

>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase From Arabidopsis Thaliana In Complex With Amppnp And Aps Length = 200

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
           Q    +   GLSG+GK++++  +   L  +G   Y LDGDN+R+G+N +L+F  EDR EN
Sbjct: 23  QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN 82
Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
           +RR  E AK+FA+ G I + S +SP    RD  R +      +F EVF++ P+ +CE RD
Sbjct: 83  IRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEG--DFVEVFMDVPLSVCEARD 140
Query: 140 VKGHYKKAREGKIKSFTGVSQPYEAPKNPDLIL--ETVNVPVEKCANSVLDMIAAKGLIP 197
            KG YK AR GKIK FTG+  PYE P N ++ L  E    P+E  A  V+  +  KG + 
Sbjct: 141 PKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSPIEM-AEKVVGYLDNKGYLQ 199
Query: 198 A 198
           A
Sbjct: 200 A 200

>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps Kinase From Aquifex Aeolicus, A Chemolithotrophic Thermophile Length = 546

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/187 (38%), Positives = 111/187 (59%), Gaps = 5/187 (2%)
Query: 10  ESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL 69
           E+++   K+G    C+   GL  AGK++I+  + + L A+G     LDGD +R  ++  L
Sbjct: 363 ETYVPKHKQG---FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL 419
Query: 70  AFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN 129
            FS+EDR  N+ R    A    +   + +C+ VSP  +AR++ R +      +F EVFV+
Sbjct: 420 GFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEG--KFIEVFVD 477
Query: 130 TPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDM 189
            PVE+CE+RDVKG YKKA+EG IK FTGV  PYE P  P++ ++T  +  E+ A  +L+ 
Sbjct: 478 APVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTPEESALKILEF 537
Query: 190 IAAKGLI 196
           +  +G I
Sbjct: 538 LKKEGFI 544

>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195 Length = 186

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 104/180 (57%)
Query: 13  LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
           L  +K  +  I +   GL G+GKT+I+ ++   L  +G     LDGD  R  ++    F+
Sbjct: 4   LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT 63
Query: 73  EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
            E+R  +++R A  A++ A  G I +CSFVSP   AR+  R I     + F E++V   +
Sbjct: 64  REERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASL 123
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
           E   +RD KG YKKA +G++++FTG++ PYE P+NP L+L+T +  +E   + +  ++ A
Sbjct: 124 EEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183

>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans Length = 552

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 2/178 (1%)
Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL-DGDNLRNGINANLAFSEEDRNE 78
           +    + F GLSGAGK++++  + + L+  G     L DGD +R  +++ L FS+  R+ 
Sbjct: 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDV 426
Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
           NVRR    A    +   IA+C+ ++P    R   R +       F E+ V TP+E CE R
Sbjct: 427 NVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESR 485
Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           D KG Y KAR G I  FTGVS PYE P+ P+L ++T  + +++    +L  +  +G +
Sbjct: 486 DRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHEGYL 543

>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The T-State Length = 573

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 24  CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVRR 82
            +   G   +GK +I+  ++  L  QG  + +L  GD +R+ +++ L F+ EDR+ N++R
Sbjct: 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 457
Query: 83  AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
            A  A      G   + + ++P   +R  AR+    A   FF V V TP+E CEQ D +G
Sbjct: 458 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRG 516
Query: 143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
            Y  AR G+IK FTGV  PYE P+  DL+++     V    + ++ ++ ++G +
Sbjct: 517 IYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFL 570

>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium Chrysogenum Length = 573

Iteration: 1
 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 24  CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVRR 82
            +   G   +GK +I+  ++  L  QG  + +L  GD +R+ +++ L F+ EDR+ N++R
Sbjct: 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 457
Query: 83  AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
            A  A      G   + + ++P   +R  AR+    A   FF V V TP+E CEQ D +G
Sbjct: 458 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRG 516
Query: 143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
            Y  AR G+IK FTGV  PYE P+  DL+++     V    + ++ ++ ++G +
Sbjct: 517 IYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFL 570

>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps Synthetase 1 Length = 405

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFN-TLDSNV-NQSVAIVLA 262
           E LP L I  +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+  LD  V N SV IVL 
Sbjct: 33  ETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLDGGVINLSVPIVLT 92
Query: 263 VTGEDKQRLE 272
            T EDK+RL+
Sbjct: 93  ATHEDKERLD 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	1e-103
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	1e-94
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	2e-94
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	9e-92
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	3e-91
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	2e-72
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	1e-16
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	3e-67
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	2e-18
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	4e-66
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	8e-17
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	1e-24
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	6e-15
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	1e-12
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	6e-12
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	9e-11
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	3e-10
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-10
1r6x_A	395	ATP:sulfate adenylyltransferase; APS kinase-like d	3e-10
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	1e-09
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	1e-09
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	2e-08
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	8e-08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	9e-06
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	2e-05
2vli_A	183	Antibiotic resistance protein; transferase, tunica	4e-04
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	5e-04

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630

 Score =  312 bits (802), Expect = e-103
 Identities = 131/275 (47%), Positives = 177/275 (64%), Gaps = 19/275 (6%)

Query: 17  KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDR 76
           + G     +   GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR
Sbjct: 47  RGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDR 106

Query: 77  NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICE 136
            ENVRR AE AK+FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CE
Sbjct: 107 EENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCE 166

Query: 137 QRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           QRDVKG YKKAR G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++
Sbjct: 167 QRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV 226

Query: 197 P---------------ARQFFFIEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDE 239
           P                      +A  LP L I  +D+QWVQV+AEGW++PL GFMRE E
Sbjct: 227 PVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMRERE 286

Query: 240 FLKTIHFNTL--DSNVNQSVAIVLAVTGEDKQRLE 272
           +L+ +HF+ L     +N SV IVL  T EDK+RL+
Sbjct: 287 YLQCLHFDCLLDGGVINLSVPIVLTATHEDKERLD 321

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Length = 179

 Score =  275 bits (705), Expect = 1e-94
 Identities = 90/178 (50%), Positives = 122/178 (68%)

Query: 19  GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE 78
                 +   GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS EDR E
Sbjct: 2   HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61

Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
           NVRR AE AK+FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+ +CEQR
Sbjct: 62  NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121

Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           DVKG YKKAR G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  + ++
Sbjct: 122 DVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV 179

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Length = 186

 Score =  275 bits (705), Expect = 2e-94
 Identities = 63/181 (34%), Positives = 104/181 (57%)

Query: 13  LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
           L  +K  +  I +   GL G+GKT+I+ ++   L  +G     LDGD  R  ++    F+
Sbjct: 4   LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT 63

Query: 73  EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
            E+R  +++R A  A++ A  G I +CSFVSP   AR+  R I     + F E++V   +
Sbjct: 64  REERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASL 123

Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
           E   +RD KG YKKA +G++++FTG++ PYE P+NP L+L+T +  +E   + +  ++ A
Sbjct: 124 EEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183

Query: 193 K 193
            
Sbjct: 184 V 184

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} PDB: 4fxp_A* Length = 200

 Score =  268 bits (688), Expect = 9e-92
 Identities = 74/186 (39%), Positives = 105/186 (56%), Gaps = 3/186 (1%)

Query: 14  RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
           R     Q    +   GLSG+GK++++  +   L  +G   Y LDGDN+R+G+N +L+F  
Sbjct: 17  RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKA 76

Query: 74  EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
           EDR EN+RR  E AK+FA+ G I + S +SP    RD  R +      +F EVF++ P+ 
Sbjct: 77  EDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEG--DFVEVFMDVPLS 134

Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN-VPVEKCANSVLDMIAA 192
           +CE RD KG YK AR GKIK FTG+  PYE P N ++ L         + A  V+  +  
Sbjct: 135 VCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN 194

Query: 193 KGLIPA 198
           KG + A
Sbjct: 195 KGYLQA 200

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Length = 211

 Score =  267 bits (686), Expect = 3e-91
 Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 7/194 (3%)

Query: 14  RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINANLAFS 72
           R     Q  + +   GLS +GK++++ ++E  L+    + AY LDGDN+R G+N +L FS
Sbjct: 17  RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFS 76

Query: 73  EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIH------RNANLEFFEV 126
           E DRNEN+RR AE AK+FA+   IA+ SF+SP    RD AR++H          L F EV
Sbjct: 77  EADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEV 136

Query: 127 FVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSV 186
           +V+ PVE+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++   +PV+     +
Sbjct: 137 YVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQI 196

Query: 187 LDMIAAKGLIPARQ 200
           +D +  KG +PA++
Sbjct: 197 IDYLDTKGYLPAKK 210

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Length = 552

 Score =  230 bits (589), Expect = 2e-72
 Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 2/182 (1%)

Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNLRNGINANLAFSEEDRNE 78
           +    + F GLSGAGK++++  + + L+  G      LDGD +R  +++ L FS+  R+ 
Sbjct: 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDV 426

Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
           NVRR    A    +   IA+C+ ++P    R   R +       F E+ V TP+E CE R
Sbjct: 427 NVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESR 485

Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPA 198
           D KG Y KAR G I  FTGVS PYE P+ P+L ++T  + +++    +L  +  +G +  
Sbjct: 486 DRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHEGYLRL 545

Query: 199 RQ 200
             
Sbjct: 546 EH 547

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Length = 552

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 15/68 (22%), Positives = 23/68 (33%)

Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
            +LP LD+       ++++  G  SPL GFM   +  +      LD        I L   
Sbjct: 30  LSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVESAQQLDDGSFWPSPITLTSR 89

Query: 265 GEDKQRLE 272
                   
Sbjct: 90  DRALADRR 97

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546

 Score =  217 bits (553), Expect = 3e-67
 Identities = 69/175 (39%), Positives = 103/175 (58%), Gaps = 2/175 (1%)

Query: 23  ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRR 82
            C+   GL  AGK++I+  + + L A+G     LDGD +R  ++  L FS+EDR  N+ R
Sbjct: 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILR 432

Query: 83  AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
               A    +   + +C+ VSP  +AR++ R +       F EVFV+ PVE+CE+RDVKG
Sbjct: 433 VGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGK--FIEVFVDAPVEVCEERDVKG 490

Query: 143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
            YKKA+EG IK FTGV  PYE P  P++ ++T  +  E+ A  +L+ +  +G I 
Sbjct: 491 LYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTPEESALKILEFLKKEGFIK 545

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Length = 546

 Score = 83.5 bits (206), Expect = 2e-18
 Identities = 16/69 (23%), Positives = 32/69 (46%)

Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
           I+ L  + I    +  ++++A G  +PL  FM E+++   +    L S     + I L +
Sbjct: 4   IKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVVESMRLKSGTLFPIPITLPM 63

Query: 264 TGEDKQRLE 272
             E  + L+
Sbjct: 64  EKEIAKDLK 72

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573

 Score =  214 bits (547), Expect = 4e-66
 Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 2/178 (1%)

Query: 23  ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNLRNGINANLAFSEEDRNENVR 81
             +   G   +GK +I+  ++  L  QG  + + L GD +R+ +++ L F+ EDR+ N++
Sbjct: 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQ 456

Query: 82  RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
           R A  A      G   + + ++P   +R  AR+    A   FF V V TP+E CEQ D +
Sbjct: 457 RIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKR 515

Query: 142 GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR 199
           G Y  AR G+IK FTGV  PYE P+  DL+++     V    + ++ ++ ++G +  +
Sbjct: 516 GIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFLERQ 573

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Length = 573

 Score = 78.9 bits (194), Expect = 8e-17
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
           E+LP + +    L  +++I  G  SPL+GFM + ++ +    N L      S+ I L  +
Sbjct: 29  ESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVFSMPITLDAS 88

Query: 265 GEDKQRLE 272
            E     +
Sbjct: 89  QEVIDEKK 96

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 98.0 bits (244), Expect = 1e-24
 Identities = 26/183 (14%), Positives = 66/183 (36%), Gaps = 15/183 (8%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
           ++  GL G GK++ S  +   L    I    L  D +R     +    +E   E ++++ 
Sbjct: 7   IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE----SFPVWKEKYEEFIKKST 62

Query: 85  ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
                 A   +  +    +   + R     I +  N  +  +++   +++  +R+++   
Sbjct: 63  YRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE 122

Query: 145 KKAREGKIKSFTGVSQPYEAP------KNPDLILETVN-VPVEKCANSVLDMIAAKGLIP 197
           K   E        + + ++ P        P LI++T   +   + A  +++         
Sbjct: 123 KIPNE----VIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPKFY 178

Query: 198 ARQ 200
             +
Sbjct: 179 VLE 181

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 70.3 bits (172), Expect = 6e-15
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 21/189 (11%)

Query: 20  QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
           Q+   ++  G    GKT++S       +A G+    L  D  +  +   L +S+ + +  
Sbjct: 3   QTPALIIVTGHPATGKTTLS-----QALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRR 57

Query: 80  VRRAA-----ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEI 134
           V   A       A    + G   +           +R + +H  A     ++      ++
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 135 CEQRDVKGHYKKAREGK------IKSFTGVSQPYEAP----KNPDLILETVNVPVEKCAN 184
             +R +    + AR               V    + P      P L ++T   P +   N
Sbjct: 118 LVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTF-PEQIDMN 176

Query: 185 SVLDMIAAK 193
           +++  +   
Sbjct: 177 AIVQWVRQH 185

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 64.0 bits (155), Expect = 1e-12
 Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 23/180 (12%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGI----------PAYALDGDNLRNGINANLAFSEE 74
           ++  G S AGK+ I   ++S L    +              +         +A+   S  
Sbjct: 6   IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65

Query: 75  DRNENVRRA-AECAKMFAECGF--IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP 131
                +  A AE     A  G   I    F+     A  + R      +L+   V V   
Sbjct: 66  PEFRALEGAWAEGVVAMARAGARIIIDDVFLGG---AAAQERWRSFVGDLDVLWVGVRCD 122

Query: 132 VEICEQRDVKGHYKKAREGKIKSFTGVSQ-PYEAPKNPDLILETVNVPVEKCANSVLDMI 190
             + E R+       AR  ++                 D+ ++T +    +CA ++   +
Sbjct: 123 GAVAEGRE------TARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 62.4 bits (151), Expect = 6e-12
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 26/195 (13%)

Query: 10  ESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN--- 66
             + +    G+    ++  G+SG+GKT+I+     + +A        + D   +  N   
Sbjct: 17  NLYFQSMMTGEPTRHVVVMGVSGSGKTTIA-----HGVADETGLEFAEADAFHSPENIAT 71

Query: 67  --ANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFF 124
               +  ++EDR   +R  AE     A+ G   + +  +     RD  RE          
Sbjct: 72  MQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLRE----GPPSVD 127

Query: 125 EVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-SQ--PYEAPKNPDLILETVNV--PV 179
            + ++ P E+ + R         REG     + + SQ    EA +  +  +  +++  P 
Sbjct: 128 FLHLDGPAEVIKGR------MSKREGHFMPASLLQSQLATLEALEPDESGI-VLDLRQPP 180

Query: 180 EKCANSVLDMIAAKG 194
           E+     L  +    
Sbjct: 181 EQLIERALTWLDIAP 195

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 58.5 bits (141), Expect = 9e-11
 Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 25/172 (14%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRA 83
           G+SG+GK+++     +  +A  + A  LDGD L    N     +    +++DR   ++  
Sbjct: 15  GVSGSGKSAV-----ASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 69

Query: 84  AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
            + A        ++L    +     RD  RE     N     +++    ++ E R     
Sbjct: 70  NDAAFAMQRTNKVSLIVCSALKKHYRDLLRE----GNPNLSFIYLKGDFDVIESR----- 120

Query: 144 YKKAREGKIKSFTGV-SQ--PYEAPKN--PDLILETVNVPVEKCANSVLDMI 190
             KAR+G       + +Q    + P     D+++  ++ P+E    S +++I
Sbjct: 121 -LKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVI 171

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Length = 511

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
           +   ++    L  +++I  G  SPL GF+ E+++   +  + L      ++ I L V   
Sbjct: 32  ILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEA 91

Query: 267 DKQRLE 272
              +++
Sbjct: 92  FANQIK 97

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 57.3 bits (138), Expect = 3e-10
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 10/164 (6%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN---VRRAAE 85
           G +G GK++   ++ + L      AY ++GD + + +        E         +   +
Sbjct: 9   GPAGVGKSTTCKRLAAQL---DNSAY-IEGDIINHMVVGGYRPPWESDELLALTWKNITD 64

Query: 86  CAKMFAECGF-IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
               F      + L     P  A         +  ++E   + + T  E   +RD     
Sbjct: 65  LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL--R 122

Query: 145 KKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLD 188
           KK  +   +    V +      +      T ++      + V +
Sbjct: 123 KKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKN 166

>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 Length = 395

 Score = 59.3 bits (142), Expect = 3e-10
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
           +   ++    L  +++I  G  SPL GF+ E+++   +  + L      ++ I L V   
Sbjct: 31  ILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEA 90

Query: 267 DKQRLE 272
              +++
Sbjct: 91  FANQIK 96

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 16/174 (9%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFSEEDRNEN 79
           LL  G  G+GK++I+  + +     G+P      D+L   I        L  S +     
Sbjct: 12  LLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 68

Query: 80  VRRAAECAKMFAECGFIA-LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
           ++ AA+ A  +A+ G+   L   V P          + R  +           +E C  R
Sbjct: 69  MQIAADVAGRYAKEGYFVILDGVVRP--DWLPAFTALARPLHYIVLRTTAAEAIERCLDR 126

Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
                        + S       +E       +L       ++   S ++ + +
Sbjct: 127 GGDSLSDPLVVADLHSQFADLGAFEHH-----VLPVSGKDTDQALQSAINALQS 175

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5 Length = 349

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
           +E LP L+IG  +   ++ +A G   P+KGFM  +E L   H   L +    ++ I+L  
Sbjct: 2   VETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILLQF 61

Query: 264 TGEDKQR 270
             + +  
Sbjct: 62  REKPRVG 68

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Length = 396

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
            E+LP + I         ++  G+ SPL+GFM   + +      TL       V ++  +
Sbjct: 28  AESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAAEKMTLSDGSFFPVPVLCLL 87

Query: 264 TGEDKQR 270
              D   
Sbjct: 88  ENTDAIG 94

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 50.5 bits (120), Expect = 8e-08
 Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRA 83
           G+SG+GK+S+        IA+      ++GD L    N       +  +++DR   +   
Sbjct: 25  GVSGSGKSSV-----GEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAI 79

Query: 84  AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
            E  ++ +    +  CS +    + RD+ RE           VF++    +  +R     
Sbjct: 80  GE--RLASREPVVVSCSALKR--SYRDKLRESAPG---GLAFVFLHGSESVLAER----- 127

Query: 144 YKKAREGKIKSFTGV-SQ--PYEAPKN-PDLILETVNVPVEKCANSVLDMIA 191
               R G     + + +Q    E P+     +   V  P+ +     L  +A
Sbjct: 128 -MHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAEIVREALAGLA 178

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 15/158 (9%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANLAFSEEDRNENVRRA 83
           G  G+GK++ + +     IA+    Y ++ D+ R  I          ++++         
Sbjct: 9   GCPGSGKSTWARE----FIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64

Query: 84  AECAKMFAECGFIALCSFVS---PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140
            + AK     G       +S        R       +    +      + P     +R+ 
Sbjct: 65  FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124

Query: 141 KGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP 178
           K   K      ++S     +         +   T   P
Sbjct: 125 KRGTKAVPIDVLRSM---YKSMREYLGLPVYNGTPGKP 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 39/294 (13%), Positives = 83/294 (28%), Gaps = 88/294 (29%)

Query: 11  SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI---NA 67
             L + +  + N+ +   G+ G+GKT         +      +Y +    +   I   N 
Sbjct: 142 QALLELRPAK-NVLID--GVLGSGKTW--------VALDVCLSYKVQ-CKMDFKIFWLNL 189

Query: 68  NLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS----PTAAARDRAREI-----HRN 118
               S E   E +++     ++  +  + +     S       + +   R +     + N
Sbjct: 190 KNCNSPETVLEMLQKL--LYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 119 A--------NLEFFEVF-------VNT-PVEICEQRDVKGHYKKAREGKIKSFTGVSQPY 162
                    N + +  F       + T   ++ +          + +    + T    P 
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PD 301

Query: 163 EAPKNPDLILETVNV-----PVEKCANS--VLDMIAAKGLIPARQFFFIEALPRLDIGVI 215
           E      L+L+ ++      P E    +   L +IA             + L   D    
Sbjct: 302 EV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---------SIRDGLATWD---- 345

Query: 216 DLQWVQVIAEGWSSPLKGFMREDEFLKTIH--FNTLDSNVNQSVAIVLAVTGED 267
              W  V               D+    I    N L+    + +   L+V    
Sbjct: 346 --NWKHV-------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 45.1 bits (106), Expect = 9e-06
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 12/121 (9%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANLAFSEEDRNENVRRA 83
           G  G+GK++ + +     IA+    Y ++ D+ R  I          ++++         
Sbjct: 9   GCPGSGKSTWARE----FIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64

Query: 84  AECAKMFAECGFIALCSFVS---PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140
            + AK     G       +S        R       +    +      + P     +R+ 
Sbjct: 65  FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124

Query: 141 K 141
           K
Sbjct: 125 K 125

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 29/177 (16%)

Query: 29  GLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLRNGINAN-------LAFSEEDRNEN 79
           G     K+++     +  +++    P   + G +     + N          ++ED    
Sbjct: 8   GPDCCFKSTV-----AAKLSKELKYP--IIKGSSFELAKSGNEKLFEHFNKLADEDNVII 60

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR- 138
            R       +     F    S          + R I      +   V+++    + ++R 
Sbjct: 61  DRFVYS--NLVYAKKFKD-YS-----ILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRL 112

Query: 139 -DVKGHYKKAREGKIKS-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
                 Y + ++  I S      +            +T     ++ A  ++ ++  +
Sbjct: 113 RVRGDEYIEGKD--IDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELE 167

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 7/173 (4%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
           G  G GKT  +  +   L    +      G  LR          +E              
Sbjct: 12  GPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71

Query: 89  MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
              E     +        A   R     ++  L      +  P+ +  +R  +    +  
Sbjct: 72  ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVN 131

Query: 149 EGKIKS-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQ 200
            G ++     +             ++T  +  ++ A  +   +    L P  Q
Sbjct: 132 VGTVEDRLNELRGEQFQ-----THIDTAGLGTQQVAEQIAAQVGL-TLAPPPQ 178

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Length = 469

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 19/187 (10%)

Query: 23  ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR---NGINANLAFSEEDRNEN 79
             ++  GL   GKT IS ++  YL   G+P    +    R        +  F   D  E 
Sbjct: 40  TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 99

Query: 80  VRRAAECAK---------MFAECGFIALCSFVSPTAAARDRAREIHRNANLE--FFEVFV 128
           ++   +CA          +  E G +A+    + T   R            +  F E   
Sbjct: 100 LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 159

Query: 129 NTPVEICE-QRDVK----GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCA 183
             P  I      VK     +  +  +   + F    + YE         +  ++   K  
Sbjct: 160 VDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIM 219

Query: 184 NSVLDMI 190
           +     +
Sbjct: 220 DVGQSYV 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	100.0
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.94
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.94
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.93
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.93
1r6x_A	395	ATP:sulfate adenylyltransferase; APS kinase-like d	99.89
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.88
1v47_A	349	ATP sulfurylase; product binding complex, zinc, ri	99.87
1jhd_A	396	Sulfate adenylyltransferase; sulfurylase, APS, che	99.87
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	99.86
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.86
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.86
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.86
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.85
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.8
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.77
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.76
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.75
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.72
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.72
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.66
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.62
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.62
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.61
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.58
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.58
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.57
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.57
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.56
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.56
1via_A	175	Shikimate kinase; structural genomics, transferase	99.56
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.55
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.55
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.55
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.54
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.54
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.53
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.53
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.53
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.52
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.52
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.51
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.51
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.51
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.51
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.5
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.49
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.49
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.49
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.49
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.49
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.47
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.47
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	99.47
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.46
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.45
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.45
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.45
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.44
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.43
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.43
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.42
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.42
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.41
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.41
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.4
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.4
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.39
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.39
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.38
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.35
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.34
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.34
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.31
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.31
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.3
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.28
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.28
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.27
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.27
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.27
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.26
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.25
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.25
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.23
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.22
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.17
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.17
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.15
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.14
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.13
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.12
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.1
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.1
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.09
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.01
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.0
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.97
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.96
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.94
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.89
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.83
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.78
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.78
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.73
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.72
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.71
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.7
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.67
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.67
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.67
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.67
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.59
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.52
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.52
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.49
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.45
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.43
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.4
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.31
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.26
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.22
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.22
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.19
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.16
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.13
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.11
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.02
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.95
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.94
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.92
3bos_A	242	Putative DNA replication factor; P-loop containing	97.9
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.88
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.86
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.84
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.82
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.81
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.8
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.78
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.74
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.73
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.73
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.7
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.7
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.69
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.68
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.66
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.66
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.64
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.64
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.63
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.6
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.59
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.58
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.57
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.56
2xxa_A	433	Signal recognition particle protein; protein trans	97.56
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.54
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.53
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.53
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.53
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.52
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.52
2og2_A	359	Putative signal recognition particle receptor; nuc	97.51
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.51
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.49
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.49
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.49
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.48
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.48
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.47
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.46
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.46
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.45
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.45
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.44
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.43
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.43
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.43
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.42
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.41
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.41
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.4
3end_A	307	Light-independent protochlorophyllide reductase ir	97.39
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.39
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.39
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.39
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.38
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.37
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.37
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.37
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.37
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.36
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.35
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.34
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.33
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.33
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.32
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.31
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.3
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.3
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.29
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.29
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.29
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.29
2qgz_A	308	Helicase loader, putative primosome component; str	97.28
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.28
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.27
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.26
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.25
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.24
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.24
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.24
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.24
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.23
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.23
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.22
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.21
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.21
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.2
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.2
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.2
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.18
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.18
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	97.17
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.17
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.16
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.15
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.14
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	97.14
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.13
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.12
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.12
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.1
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.1
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.09
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.08
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.08
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.08
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.08
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.07
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.06
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.06
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.02
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.02
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.01
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.0
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.0
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	96.98
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	96.97
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.97
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.97
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	96.96
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.95
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.95
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.94
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.93
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.93
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.91
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	96.91
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	96.9
3pvs_A	447	Replication-associated recombination protein A; ma	96.89
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.88
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.88
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.88
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.87
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.86
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.85
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.84
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.83
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.81
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.81
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.79
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.79
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.78
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.78
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.76
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.74
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.74
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.74
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.73
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.73
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.72
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	96.72
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.71
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.71
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.7
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.69
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.69
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.68
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	96.68
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.68
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.67
3io5_A	333	Recombination and repair protein; storage dimer, i	96.67
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.66
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.66
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.65
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.65
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.65
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.64
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.63
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.62
1g6h_A	257	High-affinity branched-chain amino acid transport	96.62
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.61
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.61
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.6
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.59
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	96.59
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	96.59
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	96.58
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.58
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	96.58
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.57
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.57
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.57
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.56
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.56
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	96.55
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.55
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.53
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.52
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.51
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.5
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.49
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.49
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.48
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.47
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.46
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.42
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	96.41
3co5_A	143	Putative two-component system transcriptional RES	96.41
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.4
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.39
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.38
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.36
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.36
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.35
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.34
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.34
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.34
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.33
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.32
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	96.32
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.31
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.31
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.3
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.3
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.27
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.26
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.24
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.24
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.24
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.23
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.22
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.2
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.19
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	96.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.17
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.16
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.16
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	96.14
2fna_A	357	Conserved hypothetical protein; structural genomic	96.12
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	96.08
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.08
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.07
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.06
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.06
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.05
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.02
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.0
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.97
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.96
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.93
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.93
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.92
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	95.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.91
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.9
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.87
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.85
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	95.84
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.83
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.81
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.79
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.78
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.76
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.71
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.71
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.69
3igf_A	374	ALL4481 protein; two-domained protein consisting o	95.69
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.63
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.62
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.62
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.62
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.6
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.6
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	95.59
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.58
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.57
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.54
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.54
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	95.53
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.52
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.52
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.5
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.49
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.44
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.41
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	95.41
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.4
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.39
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.38
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.36
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.35
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.34
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.34
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.3
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.3
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.29
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.29
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.26
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.24
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.21
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.18
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.18
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.17
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.17
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.17
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.14
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.14
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.14
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.12
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.11
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.11
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.09
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.09
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.09
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.08
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	95.08
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.08
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.07
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.06
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.05
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.02
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.01
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.01
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.99
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.96
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.96
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	94.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.95
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	94.94
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.92
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.92
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.9
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.88
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.88
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.87
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.87
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.86
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	94.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.81
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.81
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.79

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=100.00  E-value=9e-53  Score=403.36  Aligned_cols=263  Identities=50%  Similarity=0.934  Sum_probs=230.4

Q ss_pred             cccchhhhhhhcCC----CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHH
Q psy17388          7 EGKESWLRDFKEGQ----SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRR   82 (272)
Q Consensus         7 ~~~~~~~r~~~~~~----~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~   82 (272)
                      ++.++  |+.+.++    +|++|+|+|+|||||||+|++|+++|...|++++.+|+|.++..+..+.+|+..++.+++++
T Consensus        35 v~~~~--r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~  112 (630)
T 1x6v_B           35 VSRNK--RGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR  112 (630)
T ss_dssp             CCHHH--HHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHH
T ss_pred             CCHHH--HHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHH
Confidence            44444  4555554    89999999999999999999999999888889999999999888776677887888889988


Q ss_pred             HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccC
Q psy17388         83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPY  162 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~y  162 (272)
                      +.++++.++++|.+||+++.+++...++.+++++...+.++++|||+||++++.+|+.++.+++.|.+++..+..++..|
T Consensus       113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~~~~~~~Y  192 (630)
T 1x6v_B          113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEY  192 (630)
T ss_dssp             HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----CBTTTBCC
T ss_pred             HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHHHHhhhhh
Confidence            88888888899999999988887778889999888888889999999999999999988877777777666777788899


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCCch------hhh-----------hccCCceecCchhHHHHHHHhh
Q psy17388        163 EAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQ------FFF-----------IEALPRLDIGVIDLQWVQVIAE  225 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~~~------l~~-----------~~~~~~~~~~~~~~~~~~~~~~  225 (272)
                      +.|..++++|||++.++++++++|++.|...+++|-|+      |++           +..||+|.|+++++|||++|++
T Consensus       193 e~p~~~dlvIDts~~s~eevv~~Il~~L~~~~~ip~G~~~~l~~l~v~~~~~~~~~~~a~~l~~i~l~~~~~~dlell~~  272 (630)
T 1x6v_B          193 EKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAE  272 (630)
T ss_dssp             CCCSSCSEEEETTSSCHHHHHHHHHHHHHHTTSSCCCCCCSCCCCBCCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHH
T ss_pred             cccCCCcEEEECCCCCHHHHHHHHHHHHHhcCcccccCcccceecccChHHHHHHHHhhccCCEEEECHHHHHHHHHHhc
Confidence            98878899999998999999999999999999999863      343           7789999999999999999999


Q ss_pred             ccccCccCCCCHHHHHhhhhhcccCCC--CccceeEEEecChhhhhhc
Q psy17388        226 GWSSPLKGFMREDEFLKTIHFNTLDSN--VNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       226 g~~~pl~gfm~~~~~~~v~~~~~l~~~--~~~~~pi~l~~~~~~~~~~  271 (272)
                      ||||||+|||+++||+||+++|||+||  ++|||||||+|++++++.|
T Consensus       273 G~fsPL~GfM~~~dy~~v~~~~~l~~g~~~~~~iPi~L~v~~~~~~~l  320 (630)
T 1x6v_B          273 GWATPLNGFMREREYLQCLHFDCLLDGGVINLSVPIVLTATHEDKERL  320 (630)
T ss_dssp             TTTTTCCSSCCHHHHHHHHHHSEECTTSCEECCSCCCEEECHHHHHHH
T ss_pred             CCccCchhhCCHHHHHHHHHhCEeCCCCeeeeeeEEEEeCCHHHHhhC
Confidence            999999999999999999999999996  7999999999999988765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.94  E-value=7.4e-26  Score=188.99  Aligned_cols=182  Identities=40%  Similarity=0.711  Sum_probs=156.8

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      |..+...+|.+|+|+|+|||||||+++.|+..+...|..++++|+|.++..+....++..+++..+++.+..++..+...
T Consensus        17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (200)
T 3uie_A           17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADA   96 (200)
T ss_dssp             HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhC
Confidence            45666688999999999999999999999999976676667899999988777677888888878888887888888889


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE  173 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id  173 (272)
                      |..++.++.++....|+.+++.+.  +..++.|||++|++++.+|+.++.+...+.++...+..++..|+.|..++++||
T Consensus        97 ~~~vi~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~id  174 (200)
T 3uie_A           97 GIICIASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLG  174 (200)
T ss_dssp             TCEEEEECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEC
T ss_pred             CceEEEecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCcCcCCCCCCEEEe
Confidence            999999988888888888877654  347888999999999999998888777777777777778888998888899999


Q ss_pred             CCC-CCHHHHHHHHHHHHHhCCCCC
Q psy17388        174 TVN-VPVEKCANSVLDMIAAKGLIP  197 (272)
Q Consensus       174 t~~-~~~ee~~~~I~~~L~~~~~~~  197 (272)
                      |++ +++++++++|++.|...++++
T Consensus       175 t~~~~~~~e~v~~i~~~l~~~~~~~  199 (200)
T 3uie_A          175 REGGTSPIEMAEKVVGYLDNKGYLQ  199 (200)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            998 799999999999999998875

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.94  E-value=2.9e-25  Score=212.46  Aligned_cols=180  Identities=31%  Similarity=0.565  Sum_probs=160.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFI   96 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~   96 (272)
                      .+++|.+|+|+|+|||||||+|++|+++|...| ++++++|+|.++..+..+..|...++.++++++..+++.+.++|.+
T Consensus       392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~  471 (573)
T 1m8p_A          392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAA  471 (573)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCE
Confidence            567889999999999999999999999997766 7899999999998887778899888888888888899999999999


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCC
Q psy17388         97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN  176 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~  176 (272)
                      ||++.++++...|+.++++++..| ++++|||+||++++.+|+.++++.+.+.+.++.+.+.+..|+.|..++++|||++
T Consensus       472 VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDts~  550 (573)
T 1m8p_A          472 VIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSK  550 (573)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTTT
T ss_pred             EEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEECCC
Confidence            999999988889999988887655 6889999999999999998877776666677778888888987777899999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCCC
Q psy17388        177 VPVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       177 ~~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      .++++++++|++.|.++|++..
T Consensus       551 ~s~eevv~~Il~~l~~~~~~~~  572 (573)
T 1m8p_A          551 QSVRSIVHEIILVLESQGFLER  572 (573)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCcCC
Confidence            9999999999999999998864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.93  E-value=2.3e-24  Score=181.33  Aligned_cols=187  Identities=47%  Similarity=0.826  Sum_probs=148.4

Q ss_pred             hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy17388         13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA   91 (272)
Q Consensus        13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (272)
                      .|......+|.+|+|+|+|||||||+++.|++.+. ..|+++.++|+|.++..+.....|...++..+++.+...+..++
T Consensus        16 ~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l   95 (211)
T 1m7g_A           16 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFA   95 (211)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            35666678899999999999999999999999997 56777999999998877655556776777777777766677778


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHH------hCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHR------NANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP  165 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~------~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~  165 (272)
                      +.|..||+|+.+.+...++.++.+..      ..+.++++|||+||++++.+|+.++.+.+.+.+....+..+...|+.+
T Consensus        96 ~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~~~y~~~  175 (211)
T 1m7g_A           96 DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAP  175 (211)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCCCCC
T ss_pred             HCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhhhhccCC
Confidence            88999999977666667888877776      345678999999999999999744444444544443444556678766


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCCc
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR  199 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~~  199 (272)
                      ..++++||++..++++++++|.+.+..+|+++..
T Consensus       176 ~~~~~~IDt~~~s~eev~~~I~~~l~~~~~~~~~  209 (211)
T 1m7g_A          176 ANPEVHVKNYELPVQDAVKQIIDYLDTKGYLPAK  209 (211)
T ss_dssp             SSCSEEEECSSSCHHHHHHHHHHHHHHTTCSCCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHHHcCCcccc
Confidence            6678999998889999999999999999988653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.93  E-value=6.5e-24  Score=173.84  Aligned_cols=178  Identities=51%  Similarity=0.946  Sum_probs=140.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      +++|.+|+|+|++||||||+++.|++.+...|++++.+|.|.++..+....++...++..+++++...+..+.+.|.+++
T Consensus         2 ~~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T 2pez_A            2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCI   81 (179)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEE
Confidence            35789999999999999999999999987778888889999887766555667766777777776655544557787788


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP  178 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~  178 (272)
                      ++...++...+..++.+....+.++.+|||+||++++.+|+.++.+.+.+.+.+.....+...|+.+..++++|||++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~~~~  161 (179)
T 2pez_A           82 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCD  161 (179)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEETTTSC
T ss_pred             EecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccCCCCCcEEEECCCCC
Confidence            88777766566666777666778889999999999999999776555555555444444556677676788999998889


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q psy17388        179 VEKCANSVLDMIAAKGLI  196 (272)
Q Consensus       179 ~ee~~~~I~~~L~~~~~~  196 (272)
                      +++++++|.+.+.+.|++
T Consensus       162 ~~~~~~~i~~~l~~~~~~  179 (179)
T 2pez_A          162 VNDCVQQVVELLQERDIV  179 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999988774

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.93  E-value=6e-24  Score=175.12  Aligned_cols=175  Identities=35%  Similarity=0.631  Sum_probs=141.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      ..+++.+|+|+|+|||||||+++.|++.+...|..+.++|+|.++..+..+.+|...++..+++.+...+..+.+.|.+|
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~v   88 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIV   88 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEE
Confidence            34678999999999999999999999999888888889999998877766667887777777777666666667788899


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV  177 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~  177 (272)
                      |++..+.+...++.++.++...+.++++|||++|++++.+|+.++.+.+.+...+..+...+..|+.|..++++||+++.
T Consensus        89 i~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~~~~  168 (186)
T 2yvu_A           89 ICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESN  168 (186)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEETTTS
T ss_pred             EEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEECCCC
Confidence            99988777778888888887777889999999999999999865544333333444444456668876667899999888


Q ss_pred             CHHHHHHHHHHHHHh
Q psy17388        178 PVEKCANSVLDMIAA  192 (272)
Q Consensus       178 ~~ee~~~~I~~~L~~  192 (272)
                      ++++++++|.+.+..
T Consensus       169 ~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          169 TIEHNVSYLYSLVKA  183 (186)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998864

>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5

Probab=99.89  E-value=5.5e-24  Score=192.85  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=65.4

Q ss_pred             hcc--CCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~--~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +..  ||+++|+++++||||+|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus        26 a~~~~lp~i~l~~~~l~dlell~~G~fsPL~GFM~~~dy~~V~~~~rL~dG~~wpiPI~L~v~~e~~~~l   95 (395)
T 1r6x_A           26 AQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQI   95 (395)
T ss_dssp             HTCTTSEEEECCHHHHHHHHHHHBTTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCEEECHHHHHTC
T ss_pred             hhcCCCCeEEcCHHHHHHHHHHhcCCccCCcccCCHHHHHHHHHhCcCCCCCCcceEEEEeCCHHHHhhc
Confidence            566  99999999999999999999999999999999999999999999999999999999999988765

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.88  E-value=5.2e-22  Score=189.03  Aligned_cols=177  Identities=39%  Similarity=0.690  Sum_probs=143.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ++++.+|+|+|+|||||||+|+.|++.|...|+++.++|.|.+++.+..+..|...++..+++.+..++..+++.|..||
T Consensus       369 ~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI  448 (546)
T 2gks_A          369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVI  448 (546)
T ss_dssp             GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            35678999999999999999999999998888889999999998877777788888887777777777888888999999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP  178 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~  178 (272)
                      ++...++...|..+++++..  ..+++|||++|.+++.+|+.++.+.+.+.+.+..+..++..|+.+..++++|||++.+
T Consensus       449 ~d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts~~s  526 (546)
T 2gks_A          449 CALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLT  526 (546)
T ss_dssp             EECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETTTSC
T ss_pred             EEcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECCCCC
Confidence            99888887777777766543  2468899999999999999766555444445555666677787766788999998889


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q psy17388        179 VEKCANSVLDMIAAKGLIP  197 (272)
Q Consensus       179 ~ee~~~~I~~~L~~~~~~~  197 (272)
                      +++++++|.+.|.++|++.
T Consensus       527 ~eev~~~I~~~L~~~g~~~  545 (546)
T 2gks_A          527 PEESALKILEFLKKEGFIK  545 (546)
T ss_dssp             HHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHcCCcc
Confidence            9999999999999988874

>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5

Probab=99.87  E-value=4.5e-23  Score=185.08  Aligned_cols=62  Identities=31%  Similarity=0.406  Sum_probs=59.8

Q ss_pred             ccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChh
Q psy17388        205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE  266 (272)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~  266 (272)
                      ..+|++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|+++
T Consensus         3 ~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~~~~rl~~G~~wpiPi~L~v~~~   64 (349)
T 1v47_A            3 ETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILLQFREK   64 (349)
T ss_dssp             -CCCEEECCHHHHHHHHHHHTTTTTTCCSBCCHHHHHHHHHHSBCTTSCBCCSCCCEEESSC
T ss_pred             ccCceeecCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcCeEEEecCChh
Confidence            46899999999999999999999999999999999999999999999999999999999886

>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5

Probab=99.87  E-value=4.2e-23  Score=187.86  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=61.1

Q ss_pred             hhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecCh
Q psy17388        203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTG  265 (272)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~  265 (272)
                      .+..||++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|++
T Consensus        27 ~a~~lp~i~l~~~~~~dlell~~G~fsPL~GFM~~~d~~~v~~~~rl~~G~~wpiPi~L~v~~   89 (396)
T 1jhd_A           27 EAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAAEKMTLSDGSFFPVPVLCLLEN   89 (396)
T ss_dssp             HHTTSCEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCCEESC
T ss_pred             HhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHHHhCcCCCCCCccEEEEEecch
Confidence            367899999999999999999999999999999999999999999999999999999999987

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=99.86  E-value=9.1e-23  Score=191.94  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=65.3

Q ss_pred             hcc--CCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~--~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +..  ||+++|+++++||+|+|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus        27 a~~~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~~~~rl~~G~~w~iPi~L~v~~~~~~~l   96 (511)
T 1g8f_A           27 AQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQI   96 (511)
T ss_dssp             HTCTTSEEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHHHHSBCTTCCBCCSCCCEEECHHHHTTC
T ss_pred             hhcCCCCeEEcCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhc
Confidence            556  99999999999999999999999999999999999999999999999999999999999988765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.86  E-value=7.4e-21  Score=180.94  Aligned_cols=177  Identities=35%  Similarity=0.629  Sum_probs=124.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      .++.+|+|+|++||||||+++.|+..+...+ ..+.++|+|.++..+..+.+|...++..+++++..+...+...+.+++
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi  446 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI  446 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            5789999999999999999999999996543 357789999987766666778877777777777777777777888888


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP  178 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~  178 (272)
                      +....+....++.++++++..| .++.|||++|.+++.+|..++.+.+.+.+.+..+...+..|+.|..++++|||+..+
T Consensus       447 ~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt~~~s  525 (552)
T 3cr8_A          447 CAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLA  525 (552)
T ss_dssp             ECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------CCCCCCSSCSEEECCSSCC
T ss_pred             EecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEECCCCC
Confidence            8777666677888888888777 789999999999999998777776666666777777888898888889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCC
Q psy17388        179 VEKCANSVLDMIAAKGLIP  197 (272)
Q Consensus       179 ~ee~~~~I~~~L~~~~~~~  197 (272)
                      +++++++|++.|.+.+++.
T Consensus       526 ~~e~v~~Il~~L~~~~~~~  544 (552)
T 3cr8_A          526 IDEAVQQILLKLEHEGYLR  544 (552)
T ss_dssp             HHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhcCccc
Confidence            9999999999999877654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.86  E-value=1e-22  Score=193.67  Aligned_cols=68  Identities=22%  Similarity=0.255  Sum_probs=65.7

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +..+|+++|+++++||+|+|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus        29 a~~~~~~~l~~~~~~dlell~~G~~sPl~gfm~~~d~~~v~~~~~l~~g~~~~~Pi~l~v~~~~~~~l   96 (552)
T 3cr8_A           29 ALSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVESAQQLDDGSFWPSPITLTSRDRALADR   96 (552)
T ss_dssp             HHTSCEEECCHHHHHHHHHHHHTTTTTCCEECCHHHHHHHHHHCBCTTCCBCCSCCCEEECCGGGTTC
T ss_pred             hccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHHHhCcCCCCCCcceEEEEeCCHhHhhcc
Confidence            67899999999999999999999999999999999999999999999999999999999999988765

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.86  E-value=1.4e-22  Score=192.98  Aligned_cols=68  Identities=24%  Similarity=0.331  Sum_probs=65.4

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +..+|++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus         4 ~~~~~~~~~~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~~~~~l~~g~~~~~Pi~l~v~~~~~~~l   71 (546)
T 2gks_A            4 IKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVVESMRLKSGTLFPIPITLPMEKEIAKDL   71 (546)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHTTTTTTCCSSCCHHHHHHHHHHSBCTTSCBCCSCCCEEECHHHHTTC
T ss_pred             cccCCeEecCHHHHHHHHHHhcCCcCCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhc
Confidence            56799999999999999999999999999999999999999999999999999999999999988765

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.85  E-value=1.7e-22  Score=193.36  Aligned_cols=69  Identities=26%  Similarity=0.311  Sum_probs=66.3

Q ss_pred             hhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      .+..||++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus        27 ~~~~~~~~~l~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~~~~~l~~g~~~~~Pi~l~v~~~~~~~l   95 (573)
T 1m8p_A           27 EAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVFSMPITLDASQEVIDEK   95 (573)
T ss_dssp             HHTTSCEEEECHHHHHHHHHHHTSTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCCEECHHHHHHT
T ss_pred             HhccCCeEEeCHHHHHHHHHHhcCCcCCCcccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHHhh
Confidence            377899999999999999999999999999999999999999999999999999999999999988776

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.81  E-value=1.7e-18  Score=150.20  Aligned_cols=164  Identities=14%  Similarity=0.282  Sum_probs=117.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA-AECAKMFAECGFIALC   99 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~   99 (272)
                      ++++|+|+|+|||||||+|+.|++.|...|+.+++++.|.++..+..   |... ....++.. ...+...++. ..||+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~-~e~~~~~~~~~~i~~~l~~-~~vIi   77 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEK-YEEFIKKSTYRLIDSALKN-YWVIV   77 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGG-GHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHH-HHHHHHHHHHHHHHHHhhC-CEEEE
Confidence            46799999999999999999999998777888877899988765533   4332 22222222 2334445555 78888


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC------CCCcEEEe
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP------KNPDLILE  173 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~------~~~~~~Id  173 (272)
                      |........+..+.+++...+.++.+|||+||++++.+|+.+|..    ......+..+...|+.|      ..++++||
T Consensus        78 D~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~----~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id  153 (260)
T 3a4m_A           78 DDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE----KIPNEVIKKMYEKFDEPGKKYKWDEPFLIID  153 (260)
T ss_dssp             CSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC----SSCHHHHHHHHHHCCCTTSSCGGGCCSEEEE
T ss_pred             eCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC----CCCHHHHHHHHHHhcCccccCCCCCCEEEEe
Confidence            887777778888888888888889999999999999999965521    00001122233345543      24679999


Q ss_pred             CCC-CCHHHHHHHHHHHHHhC
Q psy17388        174 TVN-VPVEKCANSVLDMIAAK  193 (272)
Q Consensus       174 t~~-~~~ee~~~~I~~~L~~~  193 (272)
                      ++. .+++++++.|.+.+...
T Consensus       154 ~~~~~~~~ei~~~I~~~l~~~  174 (260)
T 3a4m_A          154 TTKDIDFNEIAKKLIEKSKEI  174 (260)
T ss_dssp             TTSCCCHHHHHHHHHHHHTSC
T ss_pred             CCCCCCHHHHHHHHHhcccCC
Confidence            987 68999999999988764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.80  E-value=7.6e-19  Score=142.99  Aligned_cols=159  Identities=20%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-------CCCC-------HHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-------LAFS-------EEDRNENVRRAAEC   86 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-------~~~~-------~~~~~~~~~~i~~~   86 (272)
                      +|++|+|+|+|||||||+|++|++.+   +.+++.++.|.++..+...       ..+.       .......+..+...
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG   78 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence            46799999999999999999999998   5566677787665432211       0110       11112333444445


Q ss_pred             HHHHHhCCCeEEEcCCCC-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-ccccCCC
Q psy17388         87 AKMFAECGFIALCSFVSP-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-VSQPYEA  164 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-~~~~ye~  164 (272)
                      +..+.+.|..||++.... ....++.+++.+..  .++..|||+||.+++.+|+.+|..      +...... ....+..
T Consensus        79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~~~~e~l~~R~~~r~~------~~~~~~~~~~~~~~~  150 (178)
T 1qhx_A           79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGD--LDVLWVGVRCDGAVAEGRETARGD------RVAGMAAKQAYVVHE  150 (178)
T ss_dssp             HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTT--CCEEEEEEECCHHHHHHHHHHTSS------SCTTHHHHHTTGGGT
T ss_pred             HHHHHhcCCeEEEEeccccChHHHHHHHHHhcC--CcEEEEEEECCHHHHHHHHHhhCC------cccchhhhhchhhcc
Confidence            666777887777776542 22345566666543  356789999999999999965421      1111100 0111122


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        165 PKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       165 ~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      +..++++|||++.++++++++|++.+
T Consensus       151 ~~~~d~~idt~~~~~~~~~~~I~~~l  176 (178)
T 1qhx_A          151 GVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             TCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHHHh
Confidence            34578999999999999999998765

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.77  E-value=2.3e-18  Score=143.40  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECG   94 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g   94 (272)
                      +++++|+|+|+|||||||+|+.|++.+     +..++|.|.+...     +..+..+.......+++.+.+    .+..|
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~----~~~~~   86 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE----RLASR   86 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH----HHTSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH----HHhcC
Confidence            446799999999999999999999999     5667888887532     122344555444444444332    23667


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC--CCCcEEE
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP--KNPDLIL  172 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~--~~~~~~I  172 (272)
                      ..||++........++.+....   +.++.+|||++|.+++.+|+.+|...   ......+......++++  ..++++|
T Consensus        87 ~~vivd~~~~~~~~~~~l~~~~---~~~~~vi~l~~~~e~~~~Rl~~R~~~---~~~~~~~~~~~~~~~~~~~~~~~~~I  160 (202)
T 3t61_A           87 EPVVVSCSALKRSYRDKLRESA---PGGLAFVFLHGSESVLAERMHHRTGH---FMPSSLLQTQLETLEDPRGEVRTVAV  160 (202)
T ss_dssp             SCCEEECCCCSHHHHHHHHHTS---TTCCEEEEEECCHHHHHHHHHHHHSS---CCCHHHHHHHHHHCCCCTTSTTEEEE
T ss_pred             CCEEEECCCCCHHHHHHHHHhc---CCCeEEEEEeCCHHHHHHHHHHhhcc---CCCHHHHHHHHHhcCCCCCCCCeEEE
Confidence            7777776665556666655443   34578899999999999999655210   00001111122223332  2357899


Q ss_pred             eCCCCCHHHHHHHHHHHHHhCCC
Q psy17388        173 ETVNVPVEKCANSVLDMIAAKGL  195 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L~~~~~  195 (272)
                      |++ .++++++++|.+.|.+.|+
T Consensus       161 d~~-~~~~e~~~~I~~~l~~~~~  182 (202)
T 3t61_A          161 DVA-QPLAEIVREALAGLARLAE  182 (202)
T ss_dssp             ESS-SCHHHHHHHHHHHHHHHHH
T ss_pred             eCC-CCHHHHHHHHHHHHHHhhh
Confidence            987 8999999999999998765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.76  E-value=1.4e-17  Score=136.93  Aligned_cols=168  Identities=14%  Similarity=0.154  Sum_probs=101.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHH-----HHHHHHHHHHHHHHHhCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDR-----NENVRRAAECAKMFAECG   94 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~g   94 (272)
                      .+|.+|+|+|+|||||||+|+.|++.+     +..+++.|.++..+...........     ...+..+...+...++.|
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g   77 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL-----RLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSG   77 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc-----CCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999     4556788888765432222211110     111222334455566778


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-ccc-cc------cccccccCCCCC
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-GKI-KS------FTGVSQPYEAPK  166 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-~~~-~~------~~~~~~~ye~~~  166 (272)
                      ..||+|...........+..+....+.++++|||++|++++.+|+.+|.....|. ... ..      +..+...|+++.
T Consensus        78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (193)
T 2rhm_A           78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLP  157 (193)
T ss_dssp             CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCCC
T ss_pred             CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCcc
Confidence            7888876653222223444455555678899999999999999997663211111 000 01      112233355432


Q ss_pred             --CCcEEEeCCCC---CHHHHHHHHHHHHHh
Q psy17388        167 --NPDLILETVNV---PVEKCANSVLDMIAA  192 (272)
Q Consensus       167 --~~~~~Idt~~~---~~ee~~~~I~~~L~~  192 (272)
                        .++++|||+..   ..+++++.|.+.+..
T Consensus       158 ~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~  188 (193)
T 2rhm_A          158 LGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS  188 (193)
T ss_dssp             CCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence              46799999874   355666666666554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.76  E-value=3.1e-17  Score=133.23  Aligned_cols=160  Identities=18%  Similarity=0.259  Sum_probs=104.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-----cccCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANLAFSEEDRNENVRRAAECAKMFAECG   94 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~g   94 (272)
                      +++.+|+|+|+|||||||+++.|+..+     +..++|+|.+....     ..+..+.......+++.+...+..++..|
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN   80 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence            567899999999999999999999998     56788998875321     11233444444455555555555566667


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC---CCCcEE
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP---KNPDLI  171 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~---~~~~~~  171 (272)
                      ..+|++........++.    ++..+.++.+|||+||++++.+|+.+|.....   ....+......|+++   ..++++
T Consensus        81 ~~~vi~~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  153 (175)
T 1knq_A           81 KVSLIVCSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKGHFF---KTQMLVTQFETLQEPGADETDVLV  153 (175)
T ss_dssp             SEEEEECCCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC---CHHHHHHHHHHCCCCCTTCTTEEE
T ss_pred             CcEEEEeCchHHHHHHH----HHhcCCCEEEEEEECCHHHHHHHHHhccCCCC---chHHHHHHHHhhhCcccCCCCeEE
Confidence            66776655544444443    33344466889999999999999976521000   000000011123332   246899


Q ss_pred             EeCCCCCHHHHHHHHHHHHHh
Q psy17388        172 LETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      |||+ .++++++++|.+.+..
T Consensus       154 Id~~-~~~~~~~~~i~~~l~~  173 (175)
T 1knq_A          154 VDID-QPLEGVVASTIEVIKK  173 (175)
T ss_dssp             EECS-SCHHHHHHHHHHHHHC
T ss_pred             EeCC-CCHHHHHHHHHHHHhc
Confidence            9987 7999999999998864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.75  E-value=1.5e-17  Score=138.37  Aligned_cols=164  Identities=18%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFA   91 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (272)
                      +...+|.+|+|+|++||||||+++.|+..+     +..++++|.+...     ...+..+.......++..+...+....
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   98 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARA   98 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence            344578899999999999999999999998     5678999887532     112344555555555555555565566


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC--CCCc
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP--KNPD  169 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~--~~~~  169 (272)
                      ..|..+|++........++.++    ....++.+|||+||.+++.+|+.+|...   ......+......++++  ..++
T Consensus        99 ~~g~~viid~~~~~~~~~~~l~----~~~~~~~vv~l~~~~e~l~~Rl~~R~~~---~~~~~~l~~~~~~~~~~~~~~~~  171 (200)
T 4eun_A           99 DAGVSTIITCSALKRTYRDVLR----EGPPSVDFLHLDGPAEVIKGRMSKREGH---FMPASLLQSQLATLEALEPDESG  171 (200)
T ss_dssp             HTTCCEEEEECCCCHHHHHHHT----TSSSCCEEEEEECCHHHHHHHHTTCSCC---SSCGGGHHHHHHHCCCCCTTSCE
T ss_pred             hcCCCEEEEchhhhHHHHHHHH----HhCCceEEEEEeCCHHHHHHHHHhcccC---CCCHHHHHHHHHHhCCCCCCCCe
Confidence            6776666665555444444433    3233568899999999999999655210   00111111122223332  2368


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        170 LILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       170 ~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ++|||+. ++++++++|.+.+...
T Consensus       172 ~~Id~~~-~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          172 IVLDLRQ-PPEQLIERALTWLDIA  194 (200)
T ss_dssp             EEEETTS-CHHHHHHHHHHHHCCC
T ss_pred             EEEECCC-CHHHHHHHHHHHHHhc
Confidence            9999964 9999999999998753

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.72  E-value=8.3e-18  Score=137.30  Aligned_cols=164  Identities=10%  Similarity=0.086  Sum_probs=93.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc----cccccccc-cCCCCHHHHHHHHHHHHHHHHHHHh-C
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD----NLRNGINA-NLAFSEEDRNENVRRAAECAKMFAE-C   93 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D----~i~~~l~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~   93 (272)
                      ++|++|+|+|+|||||||+|+.|++.+   |.+++ +|.+    .++..+.. ...|..  ...+.+.+.+.+..+++ .
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i-~d~~~~g~~i~~~~~~g~~~~~~--~~~~~~~~~~~i~~~l~~~   76 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERL---PGSFV-FEPEEMGQALRKLTPGFSGDPQE--HPMWIPLMLDALQYASREA   76 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHS---TTCEE-CCTHHHHHHHHHTSTTCCSCGGG--STTHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc---CCCEE-EchhhhHHHHHHhCccccchhhh--hHHHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999998   44433 3532    22222211 111111  11111222233333344 3


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE  173 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id  173 (272)
                      |..||++........+..+...+...|..+..|||+||++++.+|+.+|.....   ....+..+...++++..+. +||
T Consensus        77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~---~~~~~~~~~~~~~~~~~~~-~Id  152 (183)
T 2vli_A           77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQV---NVGTVEDRLNELRGEQFQT-HID  152 (183)
T ss_dssp             SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----C---CHHHHHHHHHHHTSGGGCS-EEE
T ss_pred             CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccch---hHHHHHHHHHhhcccccce-Eee
Confidence            777777765555556666666676667666779999999999999976531100   0011111222222221234 999


Q ss_pred             CCCCCHHHHHHHHHHHHHhC
Q psy17388        174 TVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~~  193 (272)
                      +++.++++++++|.+.+...
T Consensus       153 ~~~~~~~~~~~~I~~~l~~~  172 (183)
T 2vli_A          153 TAGLGTQQVAEQIAAQVGLT  172 (183)
T ss_dssp             CTTCCHHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            98789999999999999754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.72  E-value=9e-18  Score=136.48  Aligned_cols=161  Identities=14%  Similarity=0.076  Sum_probs=93.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH-HHHHcCCCEEEecCcccccccccc-----CCCCHHHHHHHHHHHHHHHHHHH---h
Q psy17388         22 NICLLFPGLSGAGKTSISFQIES-YLIAQGIPAYALDGDNLRNGINAN-----LAFSEEDRNENVRRAAECAKMFA---E   92 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~-~L~~~g~~~~~ld~D~i~~~l~~~-----~~~~~~~~~~~~~~i~~~~~~~~---~   92 (272)
                      |.+|+|+|+|||||||+|+.|++ .+     ++.+++.|.++..+...     ..|.........+.+...+...+   .
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~-----~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   76 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNP-----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGD   76 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST-----TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcC-----CcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhcc
Confidence            57899999999999999999998 44     67889999887654331     12543322222233345566666   7


Q ss_pred             CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCC-CCcEE
Q psy17388         93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPK-NPDLI  171 (272)
Q Consensus        93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~-~~~~~  171 (272)
                      .|..||+|..+.....+..+.++++..|.++.+|||++|.+++.+|+.+|...   ......+......|+.+. .+.++
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~---~~~~~~i~~~~~~~~~~~~~~~~~  153 (181)
T 1ly1_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK---AVPIDVLRSMYKSMREYLGLPVYN  153 (181)
T ss_dssp             SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG---CCCHHHHHHHHHHHHHHHTCCCC-
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC---CCCHHHHHHHHHHhhccCCCCccc
Confidence            78899999877666778888887777787888999999999999999765311   000011122223344332 22356


Q ss_pred             EeCCCCCHHHHHHHHHHHHHh
Q psy17388        172 LETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +|++.  +++++..|...+..
T Consensus       154 id~~~--~~~v~~~i~~~l~~  172 (181)
T 1ly1_A          154 GTPGK--PKAVIFDVDGTLAK  172 (181)
T ss_dssp             ---------------------
T ss_pred             cCCCC--Cceeeehhhhhhhc
Confidence            76643  36677777666554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=1.4e-16  Score=132.33  Aligned_cols=164  Identities=14%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCC-CCHHHHHHHHHHH-HHHHHHHHhCCCe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLA-FSEEDRNENVRRA-AECAKMFAECGFI   96 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~-~~~~~~~~~~~~i-~~~~~~~~~~g~~   96 (272)
                      .++.+|+|+|+|||||||+++.|++.+     +..++|.|.+...... ... +........++.+ ..+...+...+..
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   97 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKL-----NVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENV   97 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCc
Confidence            356799999999999999999999999     4556787776432211 100 1111223333333 2344455555556


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh-hhhhhhhhhc-cccc-cccccccCCC----CCCCc
Q psy17388         97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV-KGHYKKAREG-KIKS-FTGVSQPYEA----PKNPD  169 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~-~r~~~~~r~~-~~~~-~~~~~~~ye~----~~~~~  169 (272)
                      ||..+... ....+.+. .+..   ...+|||++|++++.+|+. .+..+....+ .... ...+...|+.    +..++
T Consensus        98 vi~~ggg~-~~~~~~~~-~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad  172 (199)
T 3vaa_A           98 VISTGGGA-PCFYDNME-FMNR---TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQ  172 (199)
T ss_dssp             EEECCTTG-GGSTTHHH-HHHH---HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             EEECCCcE-EccHHHHH-HHHc---CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCC
Confidence            66543221 11111121 2222   2378999999999999997 3311000000 0000 0111111110    12378


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        170 LILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       170 ~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ++|||++.++++++++|.+.+.+.
T Consensus       173 ~~Idt~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          173 YIFNADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             EEEECCCCSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999998753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.62  E-value=1.3e-16  Score=130.65  Aligned_cols=157  Identities=18%  Similarity=0.156  Sum_probs=91.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC-C-CCHHHHHHHHHHH-HHHHHHHHhCCCeE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL-A-FSEEDRNENVRRA-AECAKMFAECGFIA   97 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~-~-~~~~~~~~~~~~i-~~~~~~~~~~g~~V   97 (272)
                      ++.+|+|+|+|||||||+|+.|++.+     ++.++|.|.+........ . +........++.+ ..+...+......|
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v   78 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT-----KRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNII   78 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcE
Confidence            35689999999999999999999999     566788887755332110 0 0011122333333 23444455555555


Q ss_pred             EEcCCC-C-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh--hhhhhhhhhhccccc---cccccccCC---CC--
Q psy17388         98 LCSFVS-P-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD--VKGHYKKAREGKIKS---FTGVSQPYE---AP--  165 (272)
Q Consensus        98 I~d~~~-~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl--~~r~~~~~r~~~~~~---~~~~~~~ye---~~--  165 (272)
                      |..+.. . ....++    .+...+   ++|||++|++++.+|+  ..+.   .|. ....   ...+...+.   +.  
T Consensus        79 i~~gg~~~~~~~~~~----~l~~~~---~vi~L~~~~e~l~~Rl~~~~~~---~rp-~~~~~~~~~~l~~~~~~r~~~y~  147 (185)
T 3trf_A           79 LATGGGVVLDEKNRQ----QISETG---VVIYLTASIDTQLKRIGQKGEM---RRP-LFIKNNSKEKLQQLNEIRKPLYQ  147 (185)
T ss_dssp             EECCTTGGGSHHHHH----HHHHHE---EEEEEECCHHHHHHHHHCCTTC---SSC-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCceecCHHHHH----HHHhCC---cEEEEECCHHHHHHHHhhcCCC---CCC-CCCCCCHHHHHHHHHHHHHHHHh
Confidence            554322 1 122333    333323   7899999999999999  4321   110 0000   011111111   11  


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ..++++|||++.++++++++|++.+...
T Consensus       148 ~~ad~~Idt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          148 AMADLVYPTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             HHCSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred             hcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            1368999999889999999999988654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.62  E-value=5.2e-15  Score=119.13  Aligned_cols=146  Identities=8%  Similarity=0.017  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFV  102 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~  102 (272)
                      ++|+|+|+|||||||+|+.|++.+     ++.++|.|.+.....     .   ....+    .... .+..|..|++|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~~~~-----~---~~~~~----~~~~-~l~~~~~vi~dr~   63 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGSSFELAKS-----G---NEKLF----EHFN-KLADEDNVIIDRF   63 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH-----CCCEEECCCHHHHTT-----C---HHHHH----HHHH-HHTTCCSEEEESC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-----CCeeecCcccccchh-----H---HHHHH----HHHH-HHHhCCCeEEeee
Confidence            489999999999999999999999     566788887654221     0   01111    1112 2345667776621


Q ss_pred             C---------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC---
Q psy17388        103 S---------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA---  164 (272)
Q Consensus       103 ~---------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~---  164 (272)
                      .               ....++..+....   ..+..+|||++|++++.+|+.+|...  .. ....+..+...|+.   
T Consensus        64 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~i~l~~~~e~~~~R~~~r~r~--~~-~~~~~~~~~~~~~~~~~  137 (173)
T 3kb2_A           64 VYSNLVYAKKFKDYSILTERQLRFIEDKI---KAKAKVVYLHADPSVIKKRLRVRGDE--YI-EGKDIDSILELYREVMS  137 (173)
T ss_dssp             HHHHHHHTTTBTTCCCCCHHHHHHHHHHH---TTTEEEEEEECCHHHHHHHHHHHSCS--CC-CHHHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHHHHhhHhhHHHHHHHhccC---CCCCEEEEEeCCHHHHHHHHHhcCCc--ch-hhhHHHHHHHHHHHHHh
Confidence            1               1122333333222   23568999999999999999664110  00 00011122222321   


Q ss_pred             -CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        165 -PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       165 -~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       ...++++||+++.++++++++|.+.++.
T Consensus       138 ~~~~~~~~id~~~~~~~ev~~~I~~~~~~  166 (173)
T 3kb2_A          138 NAGLHTYSWDTGQWSSDEIAKDIIFLVEL  166 (173)
T ss_dssp             TCSSCEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHHHHHhC
Confidence             2246789999878999999999999886

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.61  E-value=8.8e-15  Score=120.03  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c-c--------------CCCCHHHHHHHH-HHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A-N--------------LAFSEEDRNENV-RRA   83 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~-~--------------~~~~~~~~~~~~-~~i   83 (272)
                      +|.+|+|+|+|||||||+|+.|++.+     +..++|.|.+..... . +              ...........+ ..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~   76 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREM   76 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            57899999999999999999999998     566788776532211 0 0              001111111111 111


Q ss_pred             HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc--------cccc
Q psy17388         84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK--------IKSF  155 (272)
Q Consensus        84 ~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~--------~~~~  155 (272)
                      .... .....+..||+|+.......+..+...+.....+..+|||++|++++.+|+.+|.....|...        +..+
T Consensus        77 ~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~  155 (196)
T 1tev_A           77 DQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTY  155 (196)
T ss_dssp             HHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHH
T ss_pred             Hhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHH
Confidence            1111 112346678888655444444444443332222457899999999999999766321111110        0000


Q ss_pred             ccccc----cCCCCCCCcE-EEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        156 TGVSQ----PYEAPKNPDL-ILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       156 ~~~~~----~ye~~~~~~~-~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                      .....    .|..  ..++ +||++ .++++++++|.+.+.+.|
T Consensus       156 ~~~~~~~~~~y~~--~~~~~~id~~-~~~~~v~~~i~~~l~~~g  196 (196)
T 1tev_A          156 LQSTKPIIDLYEE--MGKVKKIDAS-KSVDEVFDEVVQIFDKEG  196 (196)
T ss_dssp             HHHHHHHHHHHHH--TTCEEEEETT-SCHHHHHHHHHHHHHHCC
T ss_pred             HHhHHHHHHHHHh--cCCEEEEECC-CCHHHHHHHHHHHHHhcC
Confidence            00111    1322  2344 88886 899999999999987643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.58  E-value=1.7e-14  Score=118.14  Aligned_cols=166  Identities=17%  Similarity=0.103  Sum_probs=93.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-ccCCCCHHH-----------HHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-ANLAFSEED-----------RNENVRRAAECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~~~~~~~~-----------~~~~~~~i~~~~   87 (272)
                      ..+.+|+|+|+|||||||+|+.|++.+     ++.++|.|.+..... .+......-           .......+..  
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~--   76 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKN--   76 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHH--
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHH--
Confidence            356799999999999999999999999     567788765533211 111110000           0001111111  


Q ss_pred             HHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccc-cccccCC-
Q psy17388         88 KMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFT-GVSQPYE-  163 (272)
Q Consensus        88 ~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~-~~~~~ye-  163 (272)
                       .+.. .|..||+|+.......+..+...+.....+.++|||++|++++.+|+.+|.....+... ...+. .+...++ 
T Consensus        77 -~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~  155 (194)
T 1qf9_A           77 -AIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQ  155 (194)
T ss_dssp             -HHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHT
T ss_pred             -HHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHh
Confidence             1111 45677777644333444445444442223457899999999999999765321111100 00110 0111110 


Q ss_pred             ------CCCCCc--EEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        164 ------APKNPD--LILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       164 ------~~~~~~--~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                            ....++  ++||++ .++++++++|.+.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~id~~-~~~~~~~~~i~~~l~~~~  193 (194)
T 1qf9_A          156 TKLVIDHYNKFDKVKIIPAN-RDVNEVYNDVENLFKSMG  193 (194)
T ss_dssp             HHHHHHHHHHTTCEEEEECS-SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCEEEEECC-CCHHHHHHHHHHHHHHcc
Confidence                  011234  678876 799999999999998765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.58  E-value=3.7e-15  Score=119.88  Aligned_cols=158  Identities=13%  Similarity=0.092  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-cccccccc-CCCC-HHH-HHHHHH-----HHHHHHHHHH--
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINAN-LAFS-EED-RNENVR-----RAAECAKMFA--   91 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~-~~~~-~~~-~~~~~~-----~i~~~~~~~~--   91 (272)
                      ++|+|+|+|||||||+|+.| +.+   |  ..+++.|. ++...... .... ... ......     .+.......+  
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~---g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER---G--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT---T--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC---C--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence            58999999999999999999 776   4  44566443 33322111 0000 000 001011     1122333334  


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-cc--ccCC---CC
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-VS--QPYE---AP  165 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-~~--~~ye---~~  165 (272)
                      ..+..||+++. .....++.+.....   .++++|||++|++++.+|+..|.... .......+.. +.  ..+.   ..
T Consensus        76 ~~~~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~-~~~~~~~~~~r~~~~~~~~~~~~~  150 (179)
T 3lw7_A           76 SNHDLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD-DSKEISELIRRDREELKLGIGEVI  150 (179)
T ss_dssp             CCCSCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred             cCCCeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC-CcchHHHHHHHHHhhhccChHhHH
Confidence            55667777766 44455666655543   47789999999999999997653210 0011111111 10  0110   01


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..++++||+++ +++++.++|.+.+.+
T Consensus       151 ~~ad~vId~~~-~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          151 AMADYIITNDS-NYEEFKRRCEEVTDR  176 (179)
T ss_dssp             HTCSEEEECCS-CHHHHHHHHHHHHHH
T ss_pred             HhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            35689999876 999999999988864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.57  E-value=1.5e-14  Score=122.56  Aligned_cols=163  Identities=17%  Similarity=0.198  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----cccc---------CC-CC-------------
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INAN---------LA-FS-------------   72 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~---------~~-~~-------------   72 (272)
                      +..+|.|+|.+||||||+|+.|+++|     ++.++|+|.++..     +...         .. |.             
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~l-----g~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~   87 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEEL-----GIHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS   87 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH-----TCEEECHHHHHHHHHCC--------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHc-----CCcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence            35799999999999999999999999     5667887765431     1100         00 00             


Q ss_pred             ------H-HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-
Q psy17388         73 ------E-EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-  144 (272)
Q Consensus        73 ------~-~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-  144 (272)
                            . ......+....++++.+.+.+..||...+..+      +....+.. ...+.|||++|++++.+|+.++.. 
T Consensus        88 ~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~------vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~~  160 (223)
T 3hdt_A           88 KPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY------VLDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDCI  160 (223)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHSCEEEESTTHHH------HHHHCTTC-CEEEEEEEECCHHHHHHHHHHHHTC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch------hcccccCC-CCeEEEEEECCHHHHHHHHHHhcCC
Confidence                  0 00011122233456667766777777554331      11001221 246899999999999999865410 


Q ss_pred             --hhhhhcccccccccc---------ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCC
Q psy17388        145 --KKAREGKIKSFTGVS---------QPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI  196 (272)
Q Consensus       145 --~~~r~~~~~~~~~~~---------~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~  196 (272)
                        ...+ ..+......+         ..+..|..++++|||+.++++++++.|++.+..++++
T Consensus       161 ~~~~a~-~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~~~~  222 (223)
T 3hdt_A          161 DEERAK-RRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLKGFM  222 (223)
T ss_dssp             CHHHHH-HHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence              0000 0011100001         1233455678999999999999999999999998775

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.57  E-value=2.8e-14  Score=123.05  Aligned_cols=122  Identities=17%  Similarity=0.197  Sum_probs=86.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc------ccCCCCHHHHHH--HHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN------ANLAFSEEDRNE--NVRRAAECAKM   89 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~------~~~~~~~~~~~~--~~~~i~~~~~~   89 (272)
                      ...+|.+|+|+|+|||||||+|+.|++.+   +.++.++|+|.++..+.      ...+.......+  ..+.+..++..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  104 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK  104 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence            34678999999999999999999999998   44578899999977542      223333222212  11223455566


Q ss_pred             HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +++.|..+|++........+..+...++..|..+..+|+++|++++.+|+..|
T Consensus       105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence            67777666666554333556667777788888888899999999999998765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.56  E-value=5.1e-15  Score=119.04  Aligned_cols=156  Identities=16%  Similarity=0.200  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAECGFIAL   98 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~g~~VI   98 (272)
                      +.|+|+|+|||||||+|+.|++.+     ++.++|.|.+...... ....   .......++.+ ..+...+...+.+||
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi   74 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSL-----NIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVI   74 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHH-----TCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEE
Confidence            479999999999999999999999     4556787776543211 0000   00011222222 222333444666777


Q ss_pred             EcCCC--CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---C-CCCCcEEE
Q psy17388         99 CSFVS--PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---A-PKNPDLIL  172 (272)
Q Consensus        99 ~d~~~--~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~-~~~~~~~I  172 (272)
                      +++..  .....++.    +..   ...+|||++|++++.+|+.+|.   .|.........+...|.   + ...++++|
T Consensus        75 ~~g~~~~~~~~~~~~----l~~---~~~~i~l~~~~e~~~~R~~~r~---~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i  144 (168)
T 2pt5_A           75 STGGGLGANEEALNF----MKS---RGTTVFIDIPFEVFLERCKDSK---ERPLLKRPLDEIKNLFEERRKIYSKADIKV  144 (168)
T ss_dssp             ECCHHHHTCHHHHHH----HHT---TSEEEEEECCHHHHHHHCBCTT---CCBGGGSCGGGTHHHHHHHHHHHTTSSEEE
T ss_pred             ECCCCEeCCHHHHHH----HHc---CCEEEEEECCHHHHHHHHhCCC---CCCCCcchHHHHHHHHHHHHHHHHhCCEEE
Confidence            64311  11222332    222   2378999999999999997542   11100001111222222   0 11278888


Q ss_pred             eCCCCCHHHHHHHHHHHHHhCCC
Q psy17388        173 ETVNVPVEKCANSVLDMIAAKGL  195 (272)
Q Consensus       173 dt~~~~~ee~~~~I~~~L~~~~~  195 (272)
                       +++.++++++++|.+.+.+.+.
T Consensus       145 -~~~~~~~~~~~~i~~~l~~~~~  166 (168)
T 2pt5_A          145 -KGEKPPEEVVKEILLSLEGNAL  166 (168)
T ss_dssp             -ECSSCHHHHHHHHHHHHHTSCC
T ss_pred             -CCCCCHHHHHHHHHHHHHhccC
Confidence             7778999999999999987653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.56  E-value=6.9e-14  Score=117.72  Aligned_cols=172  Identities=15%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------ccccccccc--CCCCHHHHH-----HHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINAN--LAFSEEDRN-----ENVRRAAE   85 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~--~~~~~~~~~-----~~~~~i~~   85 (272)
                      ++|++|+|.|++||||||+++.|++.|...|+++.....-       .+++.+...  ..+++....     ..++.+.+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~   83 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG   83 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999998888887655321       122212111  123322111     11122334


Q ss_pred             HHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-hhhhhccc
Q psy17388         86 CAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-KKAREGKI  152 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~~~r~~~~  152 (272)
                      .++..++.|.+||+|...            ....+...+...+.....|.++|||++|++++.+|+.+|.. .+......
T Consensus        84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~  163 (213)
T 4edh_A           84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDR  163 (213)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCH
T ss_pred             HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHH
Confidence            456667889999998421            01123333333333345688999999999999999976521 00000001


Q ss_pred             cccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        153 KSFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       153 ~~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..+..++..|...    ....++||+ +.+++++.++|.+.+.+
T Consensus       164 ~~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eeV~~~I~~~l~~  206 (213)
T 4edh_A          164 RFFEAVRQTYLQRAAQAPERYQVLDA-GLPLAEVQAGLDRLLPN  206 (213)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEeC-CCCHHHHHHHHHHHHHH
Confidence            1122233444321    123477886 57999999999988865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.56  E-value=2.4e-15  Score=122.20  Aligned_cols=155  Identities=18%  Similarity=0.280  Sum_probs=90.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCC-CCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLA-FSEEDRNENVRRA-AECAKMFAECGFIALCS  100 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~-~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d  100 (272)
                      +|+|+|+|||||||+|+.|++.+     ++.++|.|.+...... ... +........++.+ ..+...+......||..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~   80 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIAT   80 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEEC
Confidence            69999999999999999999999     5778999887543211 000 0001112223322 23344455455556653


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC--C---CCCcEEEeCC
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA--P---KNPDLILETV  175 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~--~---~~~~~~Idt~  175 (272)
                      +.... ..+.     ++..+   .+|||++|++++.+|+.+|.+. .|. .......+...|..  |   ..++++|||+
T Consensus        81 g~~~~-~~~~-----l~~~~---~~i~l~~~~e~~~~R~~~r~~~-~r~-~~~~~~~i~~~~~~r~~~y~~~~~~~Idt~  149 (175)
T 1via_A           81 GGGFV-NVSN-----LEKAG---FCIYLKADFEYLKKRLDKDEIS-KRP-LFYDEIKAKKLYNERLSKYEQKANFILNIE  149 (175)
T ss_dssp             CTTGG-GSTT-----GGGGC---EEEEEECCHHHHTTCCCGGGTT-TSC-TTCCHHHHHHHHHHHHHHHHHHCSEEEECT
T ss_pred             CCCEe-hhhH-----HhcCC---EEEEEeCCHHHHHHHHhcccCC-CCC-CcccHHHHHHHHHHHHHHHHhcCCEEEECC
Confidence            32111 1111     23332   7899999999999999765311 111 11111112222221  1   2367999999


Q ss_pred             CCCHHHHHHHHHHHHHhCC
Q psy17388        176 NVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       176 ~~~~ee~~~~I~~~L~~~~  194 (272)
                      +.+++++++.|++.+...|
T Consensus       150 ~~~~eev~~~I~~~l~~~~  168 (175)
T 1via_A          150 NKNIDELLSEIKKVIKEGG  168 (175)
T ss_dssp             TCCHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHHHHhcC
Confidence            8999999999999987654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.55  E-value=1e-14  Score=119.41  Aligned_cols=163  Identities=14%  Similarity=0.082  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc------cccccc----CCCCHHHHHHHHHHHHHHHHHHH-
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR------NGINAN----LAFSEEDRNENVRRAAECAKMFA-   91 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~------~~l~~~----~~~~~~~~~~~~~~i~~~~~~~~-   91 (272)
                      ++|+|+|+|||||||+|+.|++.++..|+++.+++.|.+.      ..+...    ..+....+......+...+...+ 
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   81 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999997777778888855432      111111    01222222233322222233444 


Q ss_pred             -hCCCeEEEcCCCCcHH--------HHHHHHHHHHhCCCceEEEEEeCCHHHHHHh-hhh--hhh-hhhhhccccccccc
Q psy17388         92 -ECGFIALCSFVSPTAA--------ARDRAREIHRNANLEFFEVFVNTPVEICEQR-DVK--GHY-KKAREGKIKSFTGV  158 (272)
Q Consensus        92 -~~g~~VI~d~~~~~~~--------~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~R-l~~--r~~-~~~r~~~~~~~~~~  158 (272)
                       ..|..||+|+......        .++.++..     .+..+|||++|++++.+| +.+  |.+ .......+.....+
T Consensus        82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~  156 (194)
T 1nks_A           82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINF  156 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHH
T ss_pred             ccCCCEEEECCchhhccccccccCCCHHHHHhc-----CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHH
Confidence             6788888886421100        02233322     145789999999998866 544  321 00000000001112


Q ss_pred             cccCCCC-----CCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        159 SQPYEAP-----KNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       159 ~~~ye~~-----~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      ...|...     ....++|++++.++++++++|.+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          157 ARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            2222211     1222666244679999999998875

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.55  E-value=2.1e-14  Score=119.83  Aligned_cols=157  Identities=11%  Similarity=0.138  Sum_probs=91.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-----cccccCCCCHHH------H-------------
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-----GINANLAFSEED------R-------------   76 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-----~l~~~~~~~~~~------~-------------   76 (272)
                      +..+|.|.|++||||||+|+.|+++|     ++.++|++.++.     ++..+ .|....      +             
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~l-----g~~~~D~~~~~~~a~~~g~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~   78 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHY-----NIPLYSKELLDEVAKDGRYSKE-VLERFDEKPMNFAFIPVPAGGTTISL   78 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHT-----TCCEECHHHHHHTTCC---------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHh-----CcCEECHHHHHHHHHhcCCCHH-HHHHHhhhchhHHHHHhccccccccc
Confidence            45699999999999999999999999     455678554432     11111 011000      0             


Q ss_pred             -HHHHHHHHHHHHHHH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-h-hhhhcc
Q psy17388         77 -NENVRRAAECAKMFA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-K-KAREGK  151 (272)
Q Consensus        77 -~~~~~~i~~~~~~~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~-~~r~~~  151 (272)
                       ...+....++++.+.  +.|.+|+......      .   +++.. -..+.|||++|++++.+|+.++.. . ..-...
T Consensus        79 ~~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~------~---vl~~~-~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~  148 (201)
T 3fdi_A           79 EQDIAIRQFNFIRKKANEEKESFVIVGRCAE------E---ILSDN-PNMISAFILGDKDTKTKRVMEREGVDEKTALNM  148 (201)
T ss_dssp             -CHHHHHHHHHHHHHHHTSCCCEEEESTTHH------H---HTTTC-TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcCCCEEEEECCcc------h---hcCCC-CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHH
Confidence             011123345666677  6776777654322      1   12221 135899999999999999865410 0 000000


Q ss_pred             cccccccc---------ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        152 IKSFTGVS---------QPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       152 ~~~~~~~~---------~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      +......+         ..+..+..++++|||+.++++++++.|++.+..+
T Consensus       149 i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          149 MKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence            11000001         1112234578999999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.55  E-value=2.9e-14  Score=118.81  Aligned_cols=170  Identities=14%  Similarity=0.176  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--------ccccccccCCCCHHHHHHHHH--HH--HHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--------LRNGINANLAFSEEDRNENVR--RA--AECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--------i~~~l~~~~~~~~~~~~~~~~--~i--~~~~   87 (272)
                      ++|++|+|+|+|||||||+|+.|++.++..++.+..+....        ++..+..+..++.......+.  +.  .+.+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEI   87 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999976666664333211        111111112233211111111  00  0123


Q ss_pred             HHHHhCCCeEEEcCCCCc----HHH-----HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388         88 KMFAECGFIALCSFVSPT----AAA-----RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV  158 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~----~~~-----r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~  158 (272)
                      ...+..|..||+|.....    ...     .+.+..+......+..+|||++|++++.+|+.+|.   .+.........+
T Consensus        88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~---~r~~~~~~~~~~  164 (212)
T 2wwf_A           88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE---EIYEKVETQKKI  164 (212)
T ss_dssp             HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS---STTCSHHHHHHH
T ss_pred             HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc---ccccHHHHHHHH
Confidence            344456778888754311    001     11111111111246688999999999999986431   111000011123


Q ss_pred             cccCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        159 SQPYEAP--KNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       159 ~~~ye~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ...|+.+  ..++++||++ .++++++++|.+.+...
T Consensus       165 ~~~~~~~~~~~~~~~Id~~-~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          165 YETYKHFAHEDYWINIDAT-RKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHGGGGTTCTTEEEEECS-SCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhccCCEEEEECC-CCHHHHHHHHHHHHHHh
Confidence            3344332  3456889986 79999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.54  E-value=2.3e-15  Score=121.67  Aligned_cols=161  Identities=16%  Similarity=0.188  Sum_probs=81.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCCCC-HHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLAFS-EEDRNENVRRA-AECAKMFAECGFIAL   98 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~~~-~~~~~~~~~~i-~~~~~~~~~~g~~VI   98 (272)
                      +.+|+|+|+|||||||+++.|+..+     +..++|+|.+...... ..+.- .......++.. ..+...+......++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~   78 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVL   78 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh-----CCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEE
Confidence            5689999999999999999999998     5678888876442211 11100 00111122211 122233333444555


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC--C---CCCcEEEe
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA--P---KNPDLILE  173 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~--~---~~~~~~Id  173 (272)
                      .......  .....+..++..+   +++|++++++++.+|+.+|...............+...+..  |   ..++++||
T Consensus        79 ~~~~~~~--~~~~~~~~l~~~~---~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id  153 (173)
T 1kag_A           79 ATGGGSV--KSRETRNRLSARG---VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIR  153 (173)
T ss_dssp             ECCTTGG--GSHHHHHHHHHHS---EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-
T ss_pred             ECCCeEE--ecHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEE
Confidence            4321111  1122223333334   67999999999999997652111000000001111111111  1   23689999


Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q psy17388        174 TVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~  192 (272)
                      |++.++++++++|.+.+..
T Consensus       154 ~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          154 TDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             ----CHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9888999999999988754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.54  E-value=2.3e-14  Score=132.25  Aligned_cols=104  Identities=13%  Similarity=0.126  Sum_probs=87.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ..+|.+|+|+|+|||||||+|+.|++.+     ++.+++.|.++.                ++.+...+...+..|..||
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vI  313 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS----------------WQRCVSSCQAALRQGKRVV  313 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSCS----------------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHHH----------------HHHHHHHHHHHHhcCCcEE
Confidence            4568899999999999999999999988     678899988732                2233444555667888899


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      +|..+.....|..+.++++..|.++.+|||++|.+++.+|+.+|.
T Consensus       314 iD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~  358 (416)
T 3zvl_A          314 IDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE  358 (416)
T ss_dssp             EESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence            998888888899999998888999999999999999999997764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.53  E-value=6.6e-15  Score=118.85  Aligned_cols=153  Identities=12%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHHH-HHHHHHHhCCCeEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRAA-ECAKMFAECGFIAL   98 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i~-~~~~~~~~~g~~VI   98 (272)
                      ++|+|+|+|||||||+|+.|++.+     ++.++|.|.+..... +....   .......++.+. .+...+. .+..||
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi   75 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL-----GYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVV   75 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh-----CCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEE
Confidence            479999999999999999999999     567788887754331 11110   112223333332 2233333 455666


Q ss_pred             EcCCCC--cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh--hhhhhhhhhcccc---ccccccccCCC--C--CC
Q psy17388         99 CSFVSP--TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV--KGHYKKAREGKIK---SFTGVSQPYEA--P--KN  167 (272)
Q Consensus        99 ~d~~~~--~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~--~r~~~~~r~~~~~---~~~~~~~~ye~--~--~~  167 (272)
                      .++...  ....++.+.    .   ..++|||++|++++.+|+.  +|..  .+ ....   ....+...|..  +  ..
T Consensus        76 ~~g~~~~~~~~~~~~l~----~---~~~~i~l~~~~e~~~~R~~~~~r~~--~r-~~~~~~~~~~~~~~~~~~~~~~~~~  145 (173)
T 1e6c_A           76 ATGGGMVLLEQNRQFMR----A---HGTVVYLFAPAEELALRLQASLQAH--QR-PTLTGRPIAEEMEAVLREREALYQD  145 (173)
T ss_dssp             ECCTTGGGSHHHHHHHH----H---HSEEEEEECCHHHHHHHHHHHHCSC--CC-CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCcEEeCHHHHHHHH----c---CCeEEEEECCHHHHHHHHhhccCCC--CC-CcCCCCCHHHHHHHHHHHHHHHHHh
Confidence            543221  223333332    2   2378999999999999996  4410  00 0000   00111111110  0  12


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        168 PDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       168 ~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ++++|||++.++++++++|.+.+..
T Consensus       146 ~~~~Id~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          146 VAHYVVDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred             CcEEEECCCCCHHHHHHHHHHHhcc
Confidence            5799999878999999999988753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.53  E-value=1e-13  Score=113.68  Aligned_cols=164  Identities=13%  Similarity=0.145  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccccCCCCHHHH-----HHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINANLAFSEEDR-----NENVRRAAECAKMF   90 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~~~~~~~~~-----~~~~~~i~~~~~~~   90 (272)
                      ++|+|+|+|||||||+|+.|++.+...|+++...|..       .++..+. +-.+.....     ...+..+...+...
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILL-TEELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999997777776554421       0111111 111222110     01112222334455


Q ss_pred             HhCCCeEEEcCC---------CC---cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388         91 AECGFIALCSFV---------SP---TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV  158 (272)
Q Consensus        91 ~~~g~~VI~d~~---------~~---~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~  158 (272)
                      +..|..||++..         .+   .......+..+......+..+|||+||++++.+|+.+|.    +......+..+
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~----~~~~~~~~~~~  155 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN----RFENKEFLEKV  155 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT----CCCCHHHHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC----ccchHHHHHHH
Confidence            678888888731         11   111122222222322246689999999999999986431    11000111112


Q ss_pred             cccCCCCC---CCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        159 SQPYEAPK---NPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       159 ~~~ye~~~---~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ...|+.+.   .+.++||+ +.+++++.++|.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~Id~-~~~~~~~~~~i~~~l~~  191 (195)
T 2pbr_A          156 RKGFLELAKEEENVVVIDA-SGEEEEVFKEILRALSG  191 (195)
T ss_dssp             HHHHHHHHHHSTTEEEEET-TSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            23343321   34588888 57999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.53  E-value=8.1e-14  Score=122.61  Aligned_cols=116  Identities=16%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-C----CCCHHHHHHHH-HHHHHHHHHHH---h
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-L----AFSEEDRNENV-RRAAECAKMFA---E   92 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-~----~~~~~~~~~~~-~~i~~~~~~~~---~   92 (272)
                      |.+|+|+|+|||||||+|+.|++.+.    ++.+++.|.++..+... .    .+... ..... +.+...+...+   +
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~----~~~~i~~D~~r~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~   76 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKK-KEGIVTGMQFDTAKSILYGGD   76 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST----TEEEECHHHHHHHHTTSCCCC---CCHH-HHHHHHHHHHHHHHHHTTSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCC----CcEEecccHHHHHhccCCcccccccchh-hhhHHHHHHHHHHHHHHhhcc
Confidence            57899999999999999999999631    57889999877654321 1    24322 22222 22334555666   7


Q ss_pred             CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .|..||+|..+.....++.+.++++..|.++.+|||++|.+++.+|+.+|
T Consensus        77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R  126 (301)
T 1ltq_A           77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR  126 (301)
T ss_dssp             TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence            78899999887777778888888887888889999999999999999765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.52  E-value=7.9e-14  Score=115.90  Aligned_cols=171  Identities=13%  Similarity=0.181  Sum_probs=93.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC---ccccccccccC---CCCHHHHH-----HHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG---DNLRNGINANL---AFSEEDRN-----ENVRRAAECAK   88 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~---D~i~~~l~~~~---~~~~~~~~-----~~~~~i~~~~~   88 (272)
                      ++|++|+|+|+|||||||+|+.|++.++..| ++...+.   +.++..+....   .+......     ..+..+...+.
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~   80 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYIL   80 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999995444 4544322   22222221111   13321110     00111112234


Q ss_pred             HHHhCCCeEEEcCCCCcHH-H-------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh-hhhh-hhhhhc-------c
Q psy17388         89 MFAECGFIALCSFVSPTAA-A-------RDRAREIHRNANLEFFEVFVNTPVEICEQRDV-KGHY-KKAREG-------K  151 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~~~-~-------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~-~r~~-~~~r~~-------~  151 (272)
                      ..+..|..||+|....... +       .+.+..+......+.++|||++|++++.+|+. +|.. .+...+       +
T Consensus        81 ~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d  160 (213)
T 2plr_A           81 PMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLS  160 (213)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSC
T ss_pred             HHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccc
Confidence            4556788899886321100 0       12233333323335678999999999999997 5531 010000       0


Q ss_pred             -c---ccc-ccccccCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        152 -I---KSF-TGVSQPYEAP--KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       152 -~---~~~-~~~~~~ye~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       .   ..+ ..+...|+..  ....++||++ .++++++++|.+.+..
T Consensus       161 ~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~-~~~e~v~~~I~~~l~~  207 (213)
T 2plr_A          161 PEEGFLKYQGLITEVYDKLVKDENFIVIDGT-KTPKEIQIQIRKFVGE  207 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTCEEEETT-SCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence             0   011 1112223211  1156889975 6999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.52  E-value=5.3e-14  Score=119.82  Aligned_cols=158  Identities=16%  Similarity=0.217  Sum_probs=92.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHH--------------------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEE--------------------   74 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~--------------------   74 (272)
                      ++|.+|+|.|+|||||||+++.|++.+     ++.++|.|.+...+.     .+......                    
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~   81 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDV   81 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCC
Confidence            457899999999999999999999999     567788877643321     11111000                    


Q ss_pred             -------------HH--------------HHHHHHHHHHHHHHHhC-CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEE
Q psy17388         75 -------------DR--------------NENVRRAAECAKMFAEC-GFIALCSFVSPTAAARDRAREIHRNANLEFFEV  126 (272)
Q Consensus        75 -------------~~--------------~~~~~~i~~~~~~~~~~-g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V  126 (272)
                                   -+              ....+.+.+..+.+.+. |.+|+......+.        .+.+   ..+.|
T Consensus        82 ~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~--------V~pd---a~lki  150 (233)
T 3r20_A           82 DAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV--------VLPD---ADVKI  150 (233)
T ss_dssp             CCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC--------CCTT---CSEEE
T ss_pred             cEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE--------EcCC---CCEEE
Confidence                         00              11123344455566666 6566543211100        0111   23789


Q ss_pred             EEeCCHHHHHHhhhhhhhhhhhhc-------cccccccccc-cCCCCC-CCc--EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        127 FVNTPVEICEQRDVKGHYKKAREG-------KIKSFTGVSQ-PYEAPK-NPD--LILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       127 ~L~~~~e~~~~Rl~~r~~~~~r~~-------~~~~~~~~~~-~ye~~~-~~~--~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ||++|.+++.+|+.++++.+....       .+......+. .|..|- .++  ++|||++++++++++.|++.+.++
T Consensus       151 fl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~  228 (233)
T 3r20_A          151 FLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQ  228 (233)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC---
T ss_pred             EEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence            999999999999876543221111       1111111222 344442 223  999999999999999999988765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.51  E-value=1.1e-13  Score=113.69  Aligned_cols=160  Identities=12%  Similarity=0.030  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c--------------cCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A--------------NLAFSEEDRNENVRRAA   84 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~--------------~~~~~~~~~~~~~~~i~   84 (272)
                      .++.+|+|+|+|||||||+|+.|++.+     +..++|.|.+..... .              +.....   ......+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~   78 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL---ETVLDMLR   78 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH---HHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH---HHHHHHHH
Confidence            467899999999999999999999999     566777766433211 0              000111   11122223


Q ss_pred             HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-cccc-ccccc--
Q psy17388         85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSF-TGVSQ--  160 (272)
Q Consensus        85 ~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~-~~~~~--  160 (272)
                      ..+......|..||+|+.......+..+...+   ..+..+|||++|++++.+|+.+|.....+... ...+ ..+..  
T Consensus        79 ~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~  155 (196)
T 2c95_A           79 DAMVAKVNTSKGFLIDGYPREVQQGEEFERRI---GQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYY  155 (196)
T ss_dssp             HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHT---CCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHH
T ss_pred             HHHHhccccCCcEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHH
Confidence            33344455677888886433333333333333   23558899999999999999765321111000 0000 00111  


Q ss_pred             --------cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        161 --------PYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       161 --------~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                              .|.. ....++||++ .++++++++|.+.+..
T Consensus       156 ~~~~~~~~~~~~-~~~~~~Id~~-~~~e~v~~~i~~~l~~  193 (196)
T 2c95_A          156 KATEPVIAFYEK-RGIVRKVNAE-GSVDSVFSQVCTHLDA  193 (196)
T ss_dssp             HHTHHHHHHHHH-HTCEEEEECC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCcEEEEECC-CCHHHHHHHHHHHHHH
Confidence                    1111 0112468864 7999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.51  E-value=9e-14  Score=115.29  Aligned_cols=166  Identities=11%  Similarity=0.054  Sum_probs=90.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccCCCCHHHHHHHH--------HHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANLAFSEEDRNENV--------RRAAECAKM   89 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~~~~~~~~~~~~--------~~i~~~~~~   89 (272)
                      +.+|++|+|+|+|||||||+|+.|++.+   |  ..+++.|.+... +..+....... ...+        .....++..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l---~--~~~i~~d~~~r~~~~~~~~~g~~i-~~~~~~g~~~~~~~~~~~~~~   90 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL---G--IPQISTGELFRRNIEEGTKLGVEA-KRYLDAGDLVPSDLTNELVDD   90 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH---T--CCEEEHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh---C--CcEEehhHHHHHHHHcCChHHHHH-HHHHHcCCcccHHHHHHHHHH
Confidence            3567899999999999999999999999   3  456776554221 11110000000 0000        001111111


Q ss_pred             H---HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cccccccC--
Q psy17388         90 F---AECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTGVSQPY--  162 (272)
Q Consensus        90 ~---~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~~~~~y--  162 (272)
                      .   ...+..+|+|+.......+..+..++...+. +..+|||++|++++.+|+.+|.+.......+.. +.......  
T Consensus        91 ~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~  170 (201)
T 2cdn_A           91 RLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAP  170 (201)
T ss_dssp             HTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTT
T ss_pred             HHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHH
Confidence            1   1234457777543333455556665655443 447899999999999999765211000000000 00001000  


Q ss_pred             --CCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        163 --EAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       163 --e~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                        +......++||+ +.++++++++|.+.+.
T Consensus       171 ~~~~~~~~~~~Id~-~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          171 LLEYYRDQLKTVDA-VGTMDEVFARALRALG  200 (201)
T ss_dssp             HHHHTTTTEEEEEC-CSCHHHHHHHHHHHTT
T ss_pred             HHHHhcCcEEEEeC-CCCHHHHHHHHHHHHc
Confidence              011235678887 4799999999988764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.51  E-value=3.9e-13  Score=113.08  Aligned_cols=171  Identities=13%  Similarity=0.127  Sum_probs=101.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEecCc-------ccccccc--c---cCCCCHHHHH-----HHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGI-PAYALDGD-------NLRNGIN--A---NLAFSEEDRN-----ENVRR   82 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~-~~~~ld~D-------~i~~~l~--~---~~~~~~~~~~-----~~~~~   82 (272)
                      +|.+|+|.|++||||||+++.|++.|...|+ .+.+....       .++..+.  .   ...+++....     ...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~   81 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   81 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHH
Confidence            5789999999999999999999999998887 55443321       1122221  1   1123322111     11122


Q ss_pred             HHHHHHHHHhCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-hhhhh
Q psy17388         83 AAECAKMFAECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-KKARE  149 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~~~r~  149 (272)
                      +.+.++..++.|.+||+|....            ...+...+...+.....|.++|||++|++++.+|+.+|.. .+...
T Consensus        82 ~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~  161 (213)
T 4tmk_A           82 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ  161 (213)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred             HHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh
Confidence            3345667788999999984211            1123333333333334688999999999999999976521 00000


Q ss_pred             ccccccccccccCCCC---CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        150 GKIKSFTGVSQPYEAP---KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       150 ~~~~~~~~~~~~ye~~---~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .....+..++..|...   ....++||+ +.+++++.++|.+.+.+
T Consensus       162 ~~~~f~~rv~~~y~~la~~~~~~~vIDa-~~s~eeV~~~I~~~l~~  206 (213)
T 4tmk_A          162 ESFDFFNRTRARYLELAAQDKSIHTIDA-TQPLEAVMDAIRTTVTH  206 (213)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHCCcEEEECC-CCCHHHHHHHHHHHHHH
Confidence            0011122233344321   123467775 67999999999998875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.51  E-value=2.4e-15  Score=122.98  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=86.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC---CCCHHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL---AFSEEDRNENVRRA-AECAKMFAECGFIAL   98 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~---~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI   98 (272)
                      ++|+|+|+|||||||+|+.|++++     ++.++|.|.+........   .|. ......++.. ......+......|+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~D~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~vi   76 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL-----GVGLLDTDVAIEQRTGRSIADIFA-TDGEQEFRRIEEDVVRAALADHDGVL   76 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHSSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc-----CCCEEeCchHHHHHcCCCHHHHHH-HhChHHHHHHHHHHHHHHHhcCCeEE
Confidence            469999999999999999999999     456788888755332110   010 1111222222 222333333344455


Q ss_pred             EcCCCC-c-HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---C--CCCCcEE
Q psy17388         99 CSFVSP-T-AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---A--PKNPDLI  171 (272)
Q Consensus        99 ~d~~~~-~-~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~--~~~~~~~  171 (272)
                      .++... . ...++    .+. .+   .+|||+||.+++.+|+.+|......... .....+...|.   +  ...++++
T Consensus        77 ~~g~~~v~~~~~~~----~l~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~~~~~-~~~~~i~~~~~~r~~~~~~~~~~~  147 (184)
T 2iyv_A           77 SLGGGAVTSPGVRA----ALA-GH---TVVYLEISAAEGVRRTGGNTVRPLLAGP-DRAEKYRALMAKRAPLYRRVATMR  147 (184)
T ss_dssp             ECCTTGGGSHHHHH----HHT-TS---CEEEEECCHHHHHHHTTCCCCCSSTTSC-CHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred             ecCCcEEcCHHHHH----HHc-CC---eEEEEeCCHHHHHHHHhCCCCCCCccCC-CHHHHHHHHHHHHHHHHhccCCEE
Confidence            433211 1 12222    222 22   5799999999999999655210000000 00001111111   1  1236799


Q ss_pred             EeCCCCCHHHHHHHHHHHHHh
Q psy17388        172 LETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      |||++.++++++++|.+.+..
T Consensus       148 Idt~~~s~ee~~~~I~~~l~~  168 (184)
T 2iyv_A          148 VDTNRRNPGAVVRHILSRLQV  168 (184)
T ss_dssp             EECSSSCHHHHHHHHHTTSCC
T ss_pred             EECCCCCHHHHHHHHHHHHhh
Confidence            999888999999999887753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.50  E-value=1.9e-15  Score=123.21  Aligned_cols=153  Identities=13%  Similarity=0.087  Sum_probs=84.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc--c--cCCCCHH--HHHHHHHHHHHHHHHHHhC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN--A--NLAFSEE--DRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~--~--~~~~~~~--~~~~~~~~i~~~~~~~~~~   93 (272)
                      +++.+|+|+|+|||||||+++.|++.+     +..+++.|.+.....  .  +..+...  .......    .+...+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~   79 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS-----GLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD----ELDNQMRE   79 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHH----HHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHH----HHHHHHhc
Confidence            456789999999999999999999999     567777776533211  0  1111100  0111112    22223334


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCCCcE
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDL  170 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~  170 (272)
                      |..|+.......          +.. +....+|||+||++++.+|+.+|.+.............+...|+   +...+++
T Consensus        80 g~~vv~~~~~~~----------~~~-~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  148 (180)
T 3iij_A           80 GGVIVDYHGCDF----------FPE-RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEI  148 (180)
T ss_dssp             CCEEEECSCCTT----------SCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGG
T ss_pred             CCEEEEechhhh----------cch-hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence            555553222110          100 01347899999999999999776432211111000011111111   1011478


Q ss_pred             EEeCCCCCHHHH---HHHHHHHHHh
Q psy17388        171 ILETVNVPVEKC---ANSVLDMIAA  192 (272)
Q Consensus       171 ~Idt~~~~~ee~---~~~I~~~L~~  192 (272)
                      +|++++.+++++   +++|+..|.+
T Consensus       149 ~i~~~~~~~~ev~~~v~~i~~~l~~  173 (180)
T 3iij_A          149 VHQLPSNKPEELENNVDQILKWIEQ  173 (180)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            899888999999   7777776654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.50  E-value=4.9e-13  Score=111.82  Aligned_cols=169  Identities=14%  Similarity=0.177  Sum_probs=96.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-------ccccccccccCCCCHHHHHH-----HHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-------DNLRNGINANLAFSEEDRNE-----NVRRAAECAKM   89 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-------D~i~~~l~~~~~~~~~~~~~-----~~~~i~~~~~~   89 (272)
                      +.+|+|.|..||||||+++.|++.|. +|+++.....       ..++..+.....++......     ..+.+.+.+..
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p   80 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP   80 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999995 5777665432       11222221222233221110     01123344566


Q ss_pred             HHhCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc--ccccc
Q psy17388         90 FAECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG--KIKSF  155 (272)
Q Consensus        90 ~~~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~--~~~~~  155 (272)
                      .+..|.+||+|....            ...+...+...+...-.|.++|||++|++++.+|+.+|.....|-.  ....+
T Consensus        81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~  160 (205)
T 4hlc_A           81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFH  160 (205)
T ss_dssp             HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHH
T ss_pred             HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHH
Confidence            778999999984211            1122233333333334588999999999999999976633222210  11112


Q ss_pred             ccccccCCCC--CCC--cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        156 TGVSQPYEAP--KNP--DLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       156 ~~~~~~ye~~--~~~--~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..+++.|...  ..+  -++||. +.+++++.++|.+.+.+
T Consensus       161 ~~v~~~Y~~l~~~~~~~~~~IDa-~~~~e~V~~~i~~~i~~  200 (205)
T 4hlc_A          161 EKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTYQTIIK  200 (205)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            2334444321  122  356675 57999999999888765

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.49  E-value=5e-13  Score=113.65  Aligned_cols=171  Identities=15%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccccCCCCHHHHHHHH--HHHH---HHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINANLAFSEEDRNENV--RRAA---ECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~~~~~~~~~~~~~--~~i~---~~~   87 (272)
                      .++.+|+|.|+|||||||+++.|++.+.. |..+......       .++..+.....+........+  .+..   +.+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i  102 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKV  102 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999965 5565433211       011111111112221110000  0110   112


Q ss_pred             HHHHhCCCeEEEc----------CC--CCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc--ccc
Q psy17388         88 KMFAECGFIALCS----------FV--SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG--KIK  153 (272)
Q Consensus        88 ~~~~~~g~~VI~d----------~~--~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~--~~~  153 (272)
                      ...++.|.+||+|          +.  .........+..+......+..+|||++|++++.+|+.+|.....+..  ...
T Consensus       103 ~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~  182 (229)
T 4eaq_A          103 IPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLK  182 (229)
T ss_dssp             HHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHH
T ss_pred             HHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHH
Confidence            3455688899988          32  112234445555554444678899999999999999976532111110  001


Q ss_pred             ccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        154 SFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       154 ~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+..++..|+..    ....++||+ +.+++++.++|.+.|.+
T Consensus       183 ~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eev~~~I~~~l~~  224 (229)
T 4eaq_A          183 FHEKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTYQTIIK  224 (229)
T ss_dssp             HHHHHHHHHHHHTTTCTTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence            112223333221    122367776 57999999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.49  E-value=7e-13  Score=110.48  Aligned_cols=168  Identities=12%  Similarity=0.062  Sum_probs=91.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--------ccccccccCCCCHHHHHHH-----HHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--------LRNGINANLAFSEEDRNEN-----VRRAAEC   86 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--------i~~~l~~~~~~~~~~~~~~-----~~~i~~~   86 (272)
                      ++|++|+|+|+|||||||+++.|++.++..++.+..+....        ++..+..+..+........     ++.+ +.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~   85 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV-PL   85 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH-HH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            46789999999999999999999999987777765543211        1111211223333211100     0011 23


Q ss_pred             HHHHHhCCCeEEEcCCCC----cH-----HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc
Q psy17388         87 AKMFAECGFIALCSFVSP----TA-----AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG  157 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~----~~-----~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~  157 (272)
                      +...+..|..||+|....    +.     ...+.+..+......+..+|||++|++++.+|+.++.   .+.........
T Consensus        86 i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~---~~~~~~~~~~~  162 (215)
T 1nn5_A           86 IKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH---ERYENGAFQER  162 (215)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC--------CTTCSHHHHHH
T ss_pred             HHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccchHHHHHH
Confidence            344556788888884211    00     0122222222222235688999999999999985331   11100001111


Q ss_pred             ccccCCC---C-CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        158 VSQPYEA---P-KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       158 ~~~~ye~---~-~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +...|..   . ....++||+ +.++++++++|.+.+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~Id~-~~~~e~~~~~i~~~l~~  200 (215)
T 1nn5_A          163 ALRCFHQLMKDTTLNWKMVDA-SKSIEAVHEDIRVLSED  200 (215)
T ss_dssp             HHHHHHHHTTCTTSCEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            2222321   1 123478886 57999999999988865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.49  E-value=4.6e-14  Score=121.61  Aligned_cols=158  Identities=12%  Similarity=0.155  Sum_probs=91.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhC-CCe
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAEC-GFI   96 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~-g~~   96 (272)
                      +.+|+|+|+|||||||+++.|++.+     +..++|.|.+......+....   ....+..++.+ .++...+... ...
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~l-----g~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~  122 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSL-----GYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQV  122 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc-----CCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCc
Confidence            6789999999999999999999999     567889887654332111110   01112233333 2234444443 446


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhhhhh-c------------ccccc-cccccc
Q psy17388         97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKKARE-G------------KIKSF-TGVSQP  161 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~~r~-~------------~~~~~-~~~~~~  161 (272)
                      ||+++....  .+...+..++ .+   ++|||++|.+++.+|+.++. ..+... .            .+..+ ......
T Consensus       123 Via~GgG~v--~~~~~~~~l~-~~---~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l  196 (250)
T 3nwj_A          123 VVSTGGGAV--IRPINWKYMH-KG---ISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA  196 (250)
T ss_dssp             EEECCGGGG--GSHHHHHHHT-TS---EEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCee--cCHHHHHHHh-CC---cEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence            665542211  1112223333 23   78999999999999986421 001000 0            01111 111122


Q ss_pred             CCCCCCCcEEE------------eCCCCCHHHHHHHHHHHHHhC
Q psy17388        162 YEAPKNPDLIL------------ETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       162 ye~~~~~~~~I------------dt~~~~~ee~~~~I~~~L~~~  193 (272)
                      |+   .++++|            ||+++++++++++|++.+...
T Consensus       197 Y~---~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~  237 (250)
T 3nwj_A          197 YT---KASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY  237 (250)
T ss_dssp             HT---TSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred             Hh---hCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            33   367777            999999999999999988753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.49  E-value=9.7e-14  Score=117.86  Aligned_cols=170  Identities=14%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEecCc-------cccccccccCCCCHHHH-----HHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ----GIPAYALDGD-------NLRNGINANLAFSEEDR-----NENVRRA   83 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~----g~~~~~ld~D-------~i~~~l~~~~~~~~~~~-----~~~~~~i   83 (272)
                      ++|.+|+|.|++||||||+++.|++.|...    |+.+..+..-       .+++.+..+ .+++...     ...++.+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~~~~~~~llf~a~R~~~~  101 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDLETEALLMFAGRREHL  101 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999877    8777654311       122211111 2222111     0111223


Q ss_pred             HHHHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-
Q psy17388         84 AECAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-  150 (272)
Q Consensus        84 ~~~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-  150 (272)
                      .+.++..++.|.+||+|...            ....+...+...+.....|.++|||++|++++.+|+.+|.. ..+.. 
T Consensus       102 ~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~dr~E~  180 (227)
T 3v9p_A          102 ALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-PDKFES  180 (227)
T ss_dssp             HHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-C---CC
T ss_pred             HHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-ccchhh
Confidence            34455667889999998421            11122333333333335688999999999999999976521 00100 


Q ss_pred             -cccccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        151 -KIKSFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       151 -~~~~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       ....+..++..|+..    ....++||+ +.+++++.++|.+.|..
T Consensus       181 ~~~ef~~rv~~~Y~~la~~~~~~~~vIDa-~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          181 ESDAFFARTRAEYLRRAQEAPHRFVIVDS-SEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHHHHHh
Confidence             011122334444321    123477886 57999999999998864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.49  E-value=4e-13  Score=114.69  Aligned_cols=173  Identities=11%  Similarity=0.126  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-EEEecC-------cccccccccc---CCCCHHHHH-----HHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIP-AYALDG-------DNLRNGINAN---LAFSEEDRN-----ENVRR   82 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~-~~~ld~-------D~i~~~l~~~---~~~~~~~~~-----~~~~~   82 (272)
                      .++|.+|+|.|++||||||+++.|++.|...|++ +..+..       ..++..+..+   ..+++....     ..++.
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999988887 544431       1122222111   123321111     11222


Q ss_pred             HHHHHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-hhhhh
Q psy17388         83 AAECAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-KKARE  149 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~~~r~  149 (272)
                      +.+.++..++.|.+||+|...            ....+...+...+.....|.++|||++|++++.+|+.+|.. .+...
T Consensus       104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~  183 (236)
T 3lv8_A          104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEK  183 (236)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTT
T ss_pred             HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence            334556677899999998421            11122333333333334588999999999999999976521 00000


Q ss_pred             ccccccccccccCCCC--CCC-cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        150 GKIKSFTGVSQPYEAP--KNP-DLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       150 ~~~~~~~~~~~~ye~~--~~~-~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .....+..++..|...  ..+ .++||+ +.+++++.++|.+.|.+
T Consensus       184 ~~~~~~~rv~~~y~~la~~~~~~~vIDa-~~sieeV~~~I~~~l~~  228 (236)
T 3lv8_A          184 MDISFFERARERYLELANSDDSVVMIDA-AQSIEQVTADIRRALQD  228 (236)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence            0011122334444321  012 467776 57999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.47  E-value=9.4e-14  Score=113.42  Aligned_cols=162  Identities=13%  Similarity=0.101  Sum_probs=89.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHHH--------HHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNENV--------RRAAECAKMF   90 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~~--------~~i~~~~~~~   90 (272)
                      .+|++|+|+|+|||||||+|+.|++.+     +..++|.|.+.. .+..+......- ...+        ..+...+...
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~~~~~   75 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTGDILRDHVARGTPLGERV-RPIMERGDLVPDDLILELIREE   75 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH-----TCEEECHHHHHHHHHHTTCHHHHHH-HHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCeEecHHHHHHHHHHcCChHHHHH-HHHHHcCCcCCHHHHHHHHHHH
Confidence            357899999999999999999999998     567788765432 211110000000 0000        0111223333


Q ss_pred             HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccc-ccc--------
Q psy17388         91 AECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFT-GVS--------  159 (272)
Q Consensus        91 ~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~-~~~--------  159 (272)
                      +..+  +|+++.......+..+..++...|. +..+|||++|++++.+|+.+|.....+... ...+. .+.        
T Consensus        76 l~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~  153 (186)
T 3cm0_A           76 LAER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEP  153 (186)
T ss_dssp             CCSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             hcCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3444  6666544333444445555554443 457899999999999999766311111110 00010 011        


Q ss_pred             --ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        160 --QPYEAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       160 --~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                        ..|.. ....++||++ .++++++++|.+.+.
T Consensus       154 l~~~~~~-~~~~~~id~~-~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          154 LVGYYEA-RGVLKRVDGL-GTPDEVYARIRAALG  185 (186)
T ss_dssp             HHHHHHH-TTCEEEEECC-SCHHHHHHHHHHHHT
T ss_pred             HHHHHHh-cCcEEEEECC-CCHHHHHHHHHHHhc
Confidence              11111 1124788874 799999999988763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.47  E-value=1.2e-13  Score=112.87  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++++|+|+|+|||||||+++.|++.++..|+++.+++.|.+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~   42 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV   42 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence            46799999999999999999999999766655777775543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=99.47  E-value=2.1e-13  Score=128.31  Aligned_cols=118  Identities=10%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-c-CCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIA-Q-GIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFI   96 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~-g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~   96 (272)
                      .+++.+|||+|+|||||||+|++|+++|.. . +.++.++|+|.     .      .        .+..++..+.+.|..
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-----~------~--------ei~~va~~~~~~G~~  452 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-----K------T--------ELLSLIQDFIGSGSG  452 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-----C------H--------HHHTTHHHHHHTTCE
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-----c------H--------HHHHHHHHHHhcCCe
Confidence            356789999999999999999999999964 3 35678999987     1      0        033445566778888


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCC
Q psy17388         97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN  176 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~  176 (272)
                      ||++..++ ...|    .+++. | .|+.||                                    .|..++++|||+.
T Consensus       453 Vv~~~~sp-~~~R----~~l~~-g-~fv~v~------------------------------------~p~~adI~IDTs~  489 (511)
T 1g8f_A          453 LIIPDQWE-DDKD----SVVGK-Q-NVYLLD------------------------------------TSSSADIQLESAD  489 (511)
T ss_dssp             EEESSCCC-GGGG----GGSCC-T-TEEEEE------------------------------------SSTTCSEECSSTT
T ss_pred             EEEecCCH-HHHH----HHhcC-C-CEEEEe------------------------------------cCCCCcEEEECCC
Confidence            88887766 1122    22222 2 343333                                    2345789999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCCC
Q psy17388        177 VPVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       177 ~~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      .++++++++|++.|.+.|++.+
T Consensus       490 ~s~eevV~~Il~~L~~~g~~~~  511 (511)
T 1g8f_A          490 EPISHIVQKVVLFLEDNGFFVF  511 (511)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999988753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.46  E-value=2.1e-13  Score=115.38  Aligned_cols=175  Identities=12%  Similarity=0.147  Sum_probs=90.1

Q ss_pred             hhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEE-ecC--c-----cccccccccCCCCHHHHH----
Q psy17388         11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYA-LDG--D-----NLRNGINANLAFSEEDRN----   77 (272)
Q Consensus        11 ~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~-ld~--D-----~i~~~l~~~~~~~~~~~~----   77 (272)
                      .++.+.+.+++|++|+|.|++||||||+++.|++.|.. .|+++.+ ...  +     .++..+.....++.....    
T Consensus        10 ~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~   89 (223)
T 3ld9_A           10 GTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFI   89 (223)
T ss_dssp             ---------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            44556677788999999999999999999999999988 7877765 321  1     122222211113332111    


Q ss_pred             -HHHHHHHHHHHHHHhCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388         78 -ENVRRAAECAKMFAECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-  143 (272)
Q Consensus        78 -~~~~~i~~~~~~~~~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-  143 (272)
                       ..++.+.++++..++.|.+||+|....            ...+...+...+.. ..|.++|||++|++++.+|+ ++. 
T Consensus        90 a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr  167 (223)
T 3ld9_A           90 AMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG  167 (223)
T ss_dssp             HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc
Confidence             111223344556778899999985221            01222223333333 46889999999999999998 321 


Q ss_pred             hhhhhhccccccccccccCCC----CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        144 YKKAREGKIKSFTGVSQPYEA----PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~ye~----~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +..   .....+..++..|..    ...+.++||+ +.+++++ ++|.+.+.+
T Consensus       168 ~E~---~~~e~~~rv~~~y~~la~~~~~~~~vIDa-~~sieeV-~~I~~~l~~  215 (223)
T 3ld9_A          168 YEF---ADMEFYYRVRDGFYDIAKKNPHRCHVITD-KSETYDI-DDINFVHLE  215 (223)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCTTTEEEEES-SCSSSCC-CHHHHHHHH
T ss_pred             ccc---chHHHHHHHHHHHHHHHHHCCCCEEEEcC-CCCHHHH-HHHHHHHHH
Confidence            111   011112233444432    1134578886 5689999 888888764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=112.21  Aligned_cols=158  Identities=9%  Similarity=-0.032  Sum_probs=91.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c--------------cCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A--------------NLAFSEEDRNENVRRAAE   85 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~--------------~~~~~~~~~~~~~~~i~~   85 (272)
                      ++++|+|+|+|||||||+|+.|++.+     ++.++|.|.+..... .              +......   .....+..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~   82 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTGELLREELASESERSKLIRDIMERGDLVPSG---IVLELLKE   82 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH---HHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH---HHHHHHHH
Confidence            46799999999999999999999999     567788776532111 0              0111111   11111222


Q ss_pred             HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-cccccc-cccc---
Q psy17388         86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-KIKSFT-GVSQ---  160 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-~~~~~~-~~~~---  160 (272)
                      ........|..||+|+.......+..+...   .+.+.++|||+||++++.+|+.+|.....+.. ....+. .+..   
T Consensus        83 ~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~---~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~  159 (199)
T 2bwj_A           83 AMVASLGDTRGFLIDGYPREVKQGEEFGRR---IGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYR  159 (199)
T ss_dssp             HHHHHTTSCSCEEEETCCSSHHHHHHHHHH---TCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccccCccEEEeCCCCCHHHHHHHHHh---cCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            233334467788888654443444444322   22355789999999999999976532100100 000010 0100   


Q ss_pred             -------cCCCCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        161 -------PYEAPKNPD-LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       161 -------~ye~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                             .|..  ... ++||+ +.++++++++|.+.+..
T Consensus       160 ~~~~~~~~~~~--~~~~~~id~-~~~~e~v~~~i~~~l~~  196 (199)
T 2bwj_A          160 ASIPVIAYYET--KTQLHKINA-EGTPEDVFLQLCTAIDS  196 (199)
T ss_dssp             HHHHHHHHHHH--HSEEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--cCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence                   1211  123 67785 57999999999998875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.45  E-value=4.3e-13  Score=112.79  Aligned_cols=118  Identities=12%  Similarity=-0.009  Sum_probs=68.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHH-------HHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNEN-------VRRAAECAKMFA   91 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~-------~~~i~~~~~~~~   91 (272)
                      .++++|+|+|+|||||||+|+.|++.+     ++.+++.|.+.. ....+..+...-+...       ...+..++...+
T Consensus         3 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l   77 (217)
T 3be4_A            3 SKKHNLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKF   77 (217)
T ss_dssp             GGCCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh-----CceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            456789999999999999999999999     566777765433 2111111111100000       001112222222


Q ss_pred             ---hCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388         92 ---ECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        92 ---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                         ..|..+|+|+..........+..++...| .+..+|||++|++++.+|+..|
T Consensus        78 ~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R  132 (217)
T 3be4_A           78 DLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGR  132 (217)
T ss_dssp             HTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             hccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence               23666777753322233444444443333 3568899999999999999765

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.44  E-value=1.2e-12  Score=108.84  Aligned_cols=165  Identities=14%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc---c----ccccccccCCCCHHHHHHH----HHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD---N----LRNGINANLAFSEEDRNEN----VRRAAECAKMFA   91 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D---~----i~~~l~~~~~~~~~~~~~~----~~~i~~~~~~~~   91 (272)
                      ++|+|.|..||||||.++.|++.|...|+++.+...-   .    ++..+. ...+++....-.    .......+...+
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~-~~~~~~~~~~ll~~a~r~~~~~~I~~~L   79 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EEEVTPKAELFLFLASRNLLVTEIKQYL   79 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhh-cccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999888765421   1    111111 111222111000    111223355667


Q ss_pred             hCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccc
Q psy17388         92 ECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVS  159 (272)
Q Consensus        92 ~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~  159 (272)
                      +.|.+||||....            ...+...+.......-.|.+++||++|++++.+|...+.    |-...+.+..++
T Consensus        80 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----r~e~~ef~~rv~  155 (197)
T 3hjn_A           80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----RFEKREFLERVR  155 (197)
T ss_dssp             TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----TTCCHHHHHHHH
T ss_pred             HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----ccccHHHHHHHH
Confidence            8899999984221            112223333334333458899999999999999974331    111111122233


Q ss_pred             ccCCCC--CCC--cEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        160 QPYEAP--KNP--DLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       160 ~~ye~~--~~~--~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      +.|...  ..+  -++||. +.+++++.++|.+.++++
T Consensus       156 ~~y~~la~~~~~~~~~IDa-~~~~eeV~~~I~~~i~~r  192 (197)
T 3hjn_A          156 EGYLVLAREHPERIVVLDG-KRSIEEIHRDVVREVKRR  192 (197)
T ss_dssp             HHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhCCCCEEEEcC-CCCHHHHHHHHHHHHHHH
Confidence            334321  112  356675 579999999999999876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.43  E-value=5.7e-13  Score=112.32  Aligned_cols=166  Identities=14%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-cccccccccCCCCHHH-----------HHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-NLRNGINANLAFSEED-----------RNENVRRAAECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-~i~~~l~~~~~~~~~~-----------~~~~~~~i~~~~   87 (272)
                      .++++|+|.|+|||||+|+|+.|++.+     ++.++++. .+|..+..+.......           .......+.+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l  101 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM  101 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999999999     67788864 4444332211000000           001111111212


Q ss_pred             HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc--------cccccc--
Q psy17388         88 KMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK--------IKSFTG--  157 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~--------~~~~~~--  157 (272)
                      .........+|.|+. |  ....+...+.........+|+|++|.+++.+|+..|.....|..+        +..+..  
T Consensus       102 ~~~~~~~~g~ilDGf-P--Rt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t  178 (217)
T 3umf_A          102 IKLVDKNCHFLIDGY-P--RELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELT  178 (217)
T ss_dssp             HHHTTTCSEEEEETB-C--SSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHT
T ss_pred             hhccccccCcccccC-C--CcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            222233445666642 3  222233333222233557899999999999999776321122111        000100  


Q ss_pred             --ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCC
Q psy17388        158 --VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGL  195 (272)
Q Consensus       158 --~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~  195 (272)
                        +...|... .--+.||. +.+++++.++|.+.|++.|+
T Consensus       179 ~pl~~~Y~~~-~~l~~Idg-~~~~eeV~~~I~~~l~k~G~  216 (217)
T 3umf_A          179 KPVIEHYKQQ-NKVITIDA-SGTVDAIFDKVNHELQKFGV  216 (217)
T ss_dssp             HHHHHHHHTT-TCEEEEET-TSCHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHHHcCC
Confidence              11223221 11256776 46999999999999998875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.43  E-value=1.1e-12  Score=115.10  Aligned_cols=121  Identities=14%  Similarity=0.067  Sum_probs=84.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc------cCC-CCHHHHHHHHHHH-HHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA------NLA-FSEEDRNENVRRA-AECAKMF   90 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~------~~~-~~~~~~~~~~~~i-~~~~~~~   90 (272)
                      ..+|.+|+|+|+|||||||+|+.|++.++   ....+++.|.++..+..      ..+ +.......++..+ ...+..+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~  106 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL  106 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence            35689999999999999999999999872   25688999988764421      000 1111112333332 2344556


Q ss_pred             HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHH----HHhhhhh
Q psy17388         91 AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC----EQRDVKG  142 (272)
Q Consensus        91 ~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~----~~Rl~~r  142 (272)
                      ++.|..||++........+..+++.++..|.++.++++.+|++++    .+|+..|
T Consensus       107 l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          107 SDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             HhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            677888888766654456777777888888888789999999999    6776544

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.42  E-value=2e-12  Score=107.08  Aligned_cols=164  Identities=15%  Similarity=0.095  Sum_probs=89.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-c-ccCCCCHH-----------HHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-N-ANLAFSEE-----------DRNENVRRAAEC   86 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~-~~~~~~~~-----------~~~~~~~~i~~~   86 (272)
                      .++++|+|+|+|||||||+|+.|++.+     +..++|.|.+.... . .+..+...           ........+.+.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~   87 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA   87 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            457899999999999999999999998     56778777543221 1 11111000           011111222333


Q ss_pred             HHHHHhCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccc----ccc-cc
Q psy17388         87 AKMFAECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKS----FTG-VS  159 (272)
Q Consensus        87 ~~~~~~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~----~~~-~~  159 (272)
                      +...+..| ..+|.++..........+...+.   .+.++|||++|++++.+|+.+|.....+... .+.    +.. ..
T Consensus        88 i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~---~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~  164 (203)
T 1ukz_A           88 ISDNVKANKHKFLIDGFPRKMDQAISFERDIV---ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKE  164 (203)
T ss_dssp             HHHHHHTTCCEEEEETCCCSHHHHHHHHHHTC---CCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCeEEEeCCCCCHHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHH
Confidence            34444555 46666654322233333333222   2457899999999999999766321111100 000    000 00


Q ss_pred             cc---CCCCCCCc--EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        160 QP---YEAPKNPD--LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       160 ~~---ye~~~~~~--~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..   ++....++  ++||++ .+++++.++|.+.+..
T Consensus       165 ~~~~~~~~~~~~~~vi~id~~-~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          165 TSMPVIEYFETKSKVVRVRCD-RSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             TTHHHHHHHHTTTCEEEEECS-SCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhcCcEEEEECC-CCHHHHHHHHHHHHhc
Confidence            00   00001223  357775 7999999999998865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.42  E-value=2.8e-12  Score=105.13  Aligned_cols=158  Identities=10%  Similarity=0.096  Sum_probs=91.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCC---CHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAF---SEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~---~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      +.+|+|+|++||||||+++.|+..+.    ..+++++|.+..........   ........++.+...+..+...+..+|
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i   77 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVV   77 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC----CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence            46899999999999999999987551    34778888775532211111   111112233334444555556676777


Q ss_pred             EcCCCCcHHHHHHHHHHHH--hCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccccccccCCCCCCCcEEEeCC
Q psy17388         99 CSFVSPTAAARDRAREIHR--NANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFTGVSQPYEAPKNPDLILETV  175 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~--~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~~~~~~ye~~~~~~~~Idt~  175 (272)
                      ++.... ...++.++++++  ..+..+.+++|.+|++++.+|...|.....-... ...+..+...+   ....++|+|+
T Consensus        78 ld~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~---~~~~~ii~ts  153 (189)
T 2bdt_A           78 LDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKG---IDERYFYNTS  153 (189)
T ss_dssp             EESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTT---CCTTSEEECS
T ss_pred             EeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcC---CCccEEEeCC
Confidence            776432 334455555543  2233566799999999999999765321100000 00011111111   2346888988


Q ss_pred             CC---CHHHHHHHHH
Q psy17388        176 NV---PVEKCANSVL  187 (272)
Q Consensus       176 ~~---~~ee~~~~I~  187 (272)
                      ..   ++++++++|+
T Consensus       154 h~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          154 HLQPTNLNDIVKNLK  168 (189)
T ss_dssp             SSCGGGHHHHHHHHH
T ss_pred             CCChhhHHHHHHHHh
Confidence            77   7888888887

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.41  E-value=9e-13  Score=124.79  Aligned_cols=123  Identities=18%  Similarity=0.237  Sum_probs=87.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc---C-CCCHHHHH--HHHHHH----HHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN---L-AFSEEDRN--ENVRRA----AECAKM   89 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~---~-~~~~~~~~--~~~~~i----~~~~~~   89 (272)
                      ..+.+|+|+|+|||||||+|+.|++.|+..++++.+++.|.++..+...   . .|......  ...+.+    ...+..
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~  112 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS  112 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999997777788889989887655322   1 12211111  111111    112222


Q ss_pred             HH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhh
Q psy17388         90 FA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKG  142 (272)
Q Consensus        90 ~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r  142 (272)
                      ++  +.|..||+|+++.....|+.++++++..|..++.|++.|+ .+++.+|+.+|
T Consensus       113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r  168 (520)
T 2axn_A          113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEV  168 (520)
T ss_dssp             HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhh
Confidence            33  5788999999999889999999988888877878888887 77777777544

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.41  E-value=4.6e-14  Score=113.69  Aligned_cols=151  Identities=17%  Similarity=0.175  Sum_probs=82.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhCCCe-
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAECGFI-   96 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~g~~-   96 (272)
                      ..+|+|+|+|||||||+|+.|+++|     ++.++|.|.+...... ....   .......++.+ ..+...+.+.+.. 
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l-----g~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~   80 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL-----KLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPH   80 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCE
Confidence            4589999999999999999999999     4556788876543221 1000   00011222222 2223334445555 


Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhhhhhccccccccc----cccCCCCCCCcEE
Q psy17388         97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKKAREGKIKSFTGV----SQPYEAPKNPDLI  171 (272)
Q Consensus        97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~~r~~~~~~~~~~----~~~ye~~~~~~~~  171 (272)
                      |+..+... ... +.    ++.   ...+|||++|++++.+|+.+|. ..+........+...    ...|.  ..++++
T Consensus        81 Vi~~g~g~-~~~-~~----l~~---~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~--~~a~~~  149 (168)
T 1zuh_A           81 VISTGGGI-VMH-EN----LKG---LGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYE--KNASFI  149 (168)
T ss_dssp             EEECCGGG-GGC-GG----GTT---SEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHH--HTCSEE
T ss_pred             EEECCCCE-ech-hH----Hhc---CCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHH--HHCCEE
Confidence            66532111 011 11    222   3478999999999999996551 000000000111110    11121  236899


Q ss_pred             EeCCCCCHHHHHHHHHHHH
Q psy17388        172 LETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L  190 (272)
                      ||++. ++++++++|.+.|
T Consensus       150 Id~~~-~~e~~~~~I~~~l  167 (168)
T 1zuh_A          150 IDARG-GLNNSLKQVLQFI  167 (168)
T ss_dssp             EEGGG-CHHHHHHHHHHC-
T ss_pred             EECCC-CHHHHHHHHHHHh
Confidence            99987 9999999998765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.40  E-value=2.7e-12  Score=105.93  Aligned_cols=71  Identities=8%  Similarity=0.073  Sum_probs=44.6

Q ss_pred             CceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC----CC--CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        121 LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE----AP--KNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       121 ~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye----~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+..+|||++|++++.+|+.+|.+.............+...|+    ..  ..++++||++. ++++++++|.+.+.+
T Consensus       124 ~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~-~~~~v~~~I~~~l~~  200 (205)
T 2jaq_A          124 SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL-DVKTQIELIMNKLNS  200 (205)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS-CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC-CHHHHHHHHHHHHHH
Confidence            3558899999999999999765321111000011111222222    11  34679999876 999999999998875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.40  E-value=2e-13  Score=111.84  Aligned_cols=150  Identities=19%  Similarity=0.228  Sum_probs=82.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCcccccccc--ccC------CCC-HHHHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGDNLRNGIN--ANL------AFS-EEDRNENVRRAAECAKM   89 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D~i~~~l~--~~~------~~~-~~~~~~~~~~i~~~~~~   89 (272)
                      .++.+|+|+|+|||||||+|+.|++. +     ++.++|.|.+.....  ...      .+- .......++.+.   ..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~---~~   79 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFME---PI   79 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHH---HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHH---HH
Confidence            46789999999999999999999999 6     677888886543211  100      111 001111222221   22


Q ss_pred             HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-ccc-cc-ccc----ccccC
Q psy17388         90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-GKI-KS-FTG----VSQPY  162 (272)
Q Consensus        90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-~~~-~~-~~~----~~~~y  162 (272)
                      +...|..|+ +...+.     .    ++... ...+|||+||.+++.+|+.+|.+.+... ... .. +..    ....|
T Consensus        80 ~~~~g~~vi-~~~~~~-----~----~~~~~-~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y  148 (184)
T 1y63_A           80 MVSRGNHVV-DYHSSE-----L----FPERW-FHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAY  148 (184)
T ss_dssp             HTSSSEEEE-ECSCCT-----T----SCGGG-CSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred             HhccCCEEE-eCchHh-----h----hhhcc-CCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHh
Confidence            213443443 332220     1    11111 2268999999999999997763221110 000 00 111    11123


Q ss_pred             CCCCCCcEEEeCCCCCHHHH---HHHHHHHHHh
Q psy17388        163 EAPKNPDLILETVNVPVEKC---ANSVLDMIAA  192 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~---~~~I~~~L~~  192 (272)
                      .    ++++|++++.+++++   +++|++.+..
T Consensus       149 ~----~~~vi~~n~~~~~~~~~~v~~i~~~l~~  177 (184)
T 1y63_A          149 E----DDIVLVRENDTLEQMAATVEEIRERVEV  177 (184)
T ss_dssp             C----GGGEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             c----cCcEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            2    377888777899999   6666666653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.39  E-value=6.3e-13  Score=111.78  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHH-----------HHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEE-----------DRNENVRRAAECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~-----------~~~~~~~~i~~~~   87 (272)
                      .+|++|+|+|+|||||||+|+.|++.+     +..+++.|.+.. ....+..+...           .+......+...+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l   76 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF-----HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDEL   76 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence            457899999999999999999999999     567788765433 21111000000           0011111111111


Q ss_pred             HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhh
Q psy17388         88 KMFAECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ......|..+|+|+..........+..++...|. +.++|||++|++++.+|+..|
T Consensus        77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r  132 (220)
T 1aky_A           77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGR  132 (220)
T ss_dssp             HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCC
Confidence            1011234456677532223334444444443333 347899999999999999655

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.39  E-value=1.8e-12  Score=108.47  Aligned_cols=114  Identities=14%  Similarity=0.114  Sum_probs=66.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHHH--------HHHHHHHHHHH--
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNENV--------RRAAECAKMFA--   91 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~--   91 (272)
                      +.|+|+|+|||||||+|+.|++.+     ++.+++.|.+.. .+..+....... ...+        ..+.......+  
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~   74 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKY-----EIPHISTGDMFRAAIKNGTELGLKA-KSFMDQGNLVPDEVTIGIVHERLSK   74 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh-----CCcEeeHHHHHHHHHhcCCHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhc
Confidence            368999999999999999999998     455677755432 222110000000 0000        00111122222  


Q ss_pred             -hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCce-EEEEEeCCHHHHHHhhhhh
Q psy17388         92 -ECGFIALCSFVSPTAAARDRAREIHRNANLEF-FEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        92 -~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~-~~V~L~~~~e~~~~Rl~~r  142 (272)
                       ..+..+|.++..........+...+...+..+ .+|||++|.+++.+|+.+|
T Consensus        75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence             23556777654333445555666555555433 7899999999999999766

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.39  E-value=2.3e-12  Score=108.41  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccC-------------CCCHHHHHHHHHHHHH-
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANL-------------AFSEEDRNENVRRAAE-   85 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~-------------~~~~~~~~~~~~~i~~-   85 (272)
                      +|++|+|+|+|||||||+|+.|++.+     +..++|.|.+... ...+.             .+.+.  ......+.+ 
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~--~~~~~~~~~~   76 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY-----QLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD--EIVVNMVKER   76 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH-----CCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCH--HHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCH--HHHHHHHHHH
Confidence            56789999999999999999999999     5678887654322 11100             01100  111111111 


Q ss_pred             HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +.......+.+|+ |+.....   +.+..+......+.++|||++|++++.+|+..|
T Consensus        77 ~~~~~~~~~~~vi-dg~~~~~---~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r  129 (222)
T 1zak_A           77 LRQPDAQENGWLL-DGYPRSY---SQAMALETLEIRPDTFILLDVPDELLVERVVGR  129 (222)
T ss_dssp             HHSHHHHHTCEEE-ESCCCSH---HHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTE
T ss_pred             HhhccccCCcEEE-ECCCCCH---HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            1111122344555 5422211   222222222123457899999999999998655

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.38  E-value=2.9e-12  Score=108.22  Aligned_cols=114  Identities=13%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHHHHhC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKMFAEC   93 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~   93 (272)
                      ++|+|+|+|||||||+|+.|++.+     +..+++.|.+ ++.+..+..+.... ...+        ..+..++...+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~l-----g~~~i~~dd~~r~~~~~~~~~g~~i-~~~~~~g~~~~~~~~~~~i~~~l~~   74 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKY-----SLAHIESGGIFREHIGGGTELGKKA-KEFIDRGDLVPDDITIPMVLETLES   74 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHTTTTCHHHHHH-HHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh-----CCeEEchHHHHHHHHHcCCHHHHHH-HHHHHcCCcCcHHHHHHHHHHHHhc
Confidence            479999999999999999999999     4566777554 33211110000000 0000        1112223333333


Q ss_pred             --CCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388         94 --GFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        94 --g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                        |..||+|+..........+...+...+ .+..+|||++|++++.+|+.+|
T Consensus        75 ~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  126 (223)
T 2xb4_A           75 KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR  126 (223)
T ss_dssp             HCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTB
T ss_pred             ccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcc
Confidence              777888853322234444444433333 3558899999999999999765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.35  E-value=2.7e-12  Score=110.52  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++.+|.|+|++||||||+++.|+++|     +..++|.+.+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~L-----g~~~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESL-----NWRLLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhc-----CCCcCCCCcee
Confidence            456899999999999999999999999     56667766654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.34  E-value=4.4e-12  Score=105.07  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|+|+|++||||||+|+.|++.+     ++.++|.|.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d~~~~   38 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL-----GVPYLSSGLLYR   38 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc-----CCceeccchHHH
Confidence            89999999999999999999999     466788887654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.34  E-value=2.5e-12  Score=107.60  Aligned_cols=109  Identities=16%  Similarity=0.161  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccC------------C-CCHHHHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANL------------A-FSEEDRNENVRRAAECAK   88 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~------------~-~~~~~~~~~~~~i~~~~~   88 (272)
                      +.|+|+|+|||||||+|+.|++.+     ++.+++.|.+. +.+..+.            + +...   ..   +..+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~---~~---~~~~~~   69 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD---EV---TIGIVK   69 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH---HH---HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCH---HH---HHHHHH
Confidence            358999999999999999999988     55667775443 2221110            0 0000   01   111111


Q ss_pred             HHH---hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCce-EEEEEeCCHHHHHHhhhhh
Q psy17388         89 MFA---ECGFIALCSFVSPTAAARDRAREIHRNANLEF-FEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        89 ~~~---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~-~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ..+   ..+..+|.++..........+...+...+..+ .+|||++|++++.+|+.+|
T Consensus        70 ~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           70 ERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            111   23556777754333445555656555555433 7899999999999999766

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.33  E-value=4.4e-12  Score=104.96  Aligned_cols=143  Identities=8%  Similarity=0.119  Sum_probs=84.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----------cC---------------CCCHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----------NL---------------AFSEE   74 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----------~~---------------~~~~~   74 (272)
                      .-.+|.|+|++||||||+|+.|++.+     ++.++|.|.+.+.+..           ..               .|.+.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~   85 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESR   85 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCH
Confidence            45789999999999999999999998     5677888877332210           00               12222


Q ss_pred             HHHHHHHHHH-----HHH-HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh
Q psy17388         75 DRNENVRRAA-----ECA-KMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR  148 (272)
Q Consensus        75 ~~~~~~~~i~-----~~~-~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r  148 (272)
                      ....+...+.     ... ..+...+..||.+....+..   .+...      ...+||++||++++.+|+....     
T Consensus        86 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~---~~~~~------~d~vi~v~a~~e~r~~Rli~~q-----  151 (192)
T 2grj_A           86 ENLKKLELLVHPLMKKRVQEIINKTSGLIVIEAALLKRM---GLDQL------CDHVITVVASRETILKRNREAD-----  151 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTT---TGGGG------CSEEEEEECCHHHHHHHCSSHH-----
T ss_pred             HHHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeec---ChHHh------CCEEEEEECCHHHHHHHHHHhc-----
Confidence            2222222221     111 11222355677765433211   11111      1267999999999999972110     


Q ss_pred             hccccccccccccCC-CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        149 EGKIKSFTGVSQPYE-APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       149 ~~~~~~~~~~~~~ye-~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                         ..      ..|+ ....+|++|+++ .++++..++|.+.+.+
T Consensus       152 ---~~------~~~~~~~~~AD~vI~n~-~~~~~l~~~v~~~~~~  186 (192)
T 2grj_A          152 ---RR------LKFQEDIVPQGIVVANN-STLEDLEKKVEEVMKL  186 (192)
T ss_dssp             ---HH------HTTCTTCCCCSEEEECS-SCHHHHHHHHHHHHHH
T ss_pred             ---CC------chhhhHHhcCCEEEECC-CCHHHHHHHHHHHHHH
Confidence               00      0011 124678999986 6899999998887754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.33  E-value=8.8e-12  Score=106.73  Aligned_cols=118  Identities=11%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHHHHH--------HHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRNENV--------RRAAECAKM   89 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~~~~--------~~i~~~~~~   89 (272)
                      ..+|++|+|+|+|||||||+|+.|++.+     ++.+++.|.+. .....+....... ...+        ..+......
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~~~~r~~~~~~~~~g~~i-~~~~~~g~~~~~~~~~~~~~~   99 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTGDLLREAAEKKTELGLKI-KNIINEGKLVDDQMVLSLVDE   99 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHTTSSSHHHHHH-HHHHHTTCCCCHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecHHHHHHHHhccchHHHHH-HHHHhcCCCCcHHHHHHHHHH
Confidence            3578999999999999999999999999     56778775543 3222110000000 0000        001112222


Q ss_pred             HH---hCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhh
Q psy17388         90 FA---ECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        90 ~~---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .+   ..+..+|.|...........+..++...+. +..+|+|++|++++.+|+.+|
T Consensus       100 ~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R  156 (243)
T 3tlx_A          100 KLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGR  156 (243)
T ss_dssp             HTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             HHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcC
Confidence            22   225667777633333344445554444433 457899999999999999766

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.31  E-value=1.4e-11  Score=103.54  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +.+|+|+|++||||||+++.|++.+     ++.++|.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCcceee
Confidence            4689999999999999999999998     567788776543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.31  E-value=3.7e-12  Score=109.51  Aligned_cols=166  Identities=17%  Similarity=0.263  Sum_probs=90.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEecCccccccccc---------cCCCCHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ-----GIPAYALDGDNLRNGINA---------NLAFSEEDRNENVRRA   83 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-----g~~~~~ld~D~i~~~l~~---------~~~~~~~~~~~~~~~i   83 (272)
                      .+.++.+|.|+|+|||||||+|+.|++.++..     +..+.+++.|.+...+..         ...|...... ....+
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~-d~~~l   96 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAF-DNELI   96 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGB-CHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchh-hHHHH
Confidence            33567899999999999999999999988321     234568899988653321         1223221110 00111


Q ss_pred             HHHHHHHHh------------------------CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388         84 AECAKMFAE------------------------CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD  139 (272)
Q Consensus        84 ~~~~~~~~~------------------------~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl  139 (272)
                      .+....+..                        ....||+++...+.  ...+...+      ..+|||++|.+++.+|+
T Consensus        97 ~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~--~~~~~~~~------d~vi~l~~~~e~~~~R~  168 (252)
T 1uj2_A           97 LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY--SQEVRDLF------QMKLFVDTDADTRLSRR  168 (252)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTS--SHHHHHHC------SEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeecccc--CHHHHHhc------CeeEEEeCCHHHHHHHH
Confidence            122222221                        23466666543321  11222222      26899999999999998


Q ss_pred             hhhhh-hhhhh-ccc-ccccc-ccccCC----C-CCCCcEEE----eCCCCCHHHHHHHHHHHHHhC
Q psy17388        140 VKGHY-KKARE-GKI-KSFTG-VSQPYE----A-PKNPDLIL----ETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       140 ~~r~~-~~~r~-~~~-~~~~~-~~~~ye----~-~~~~~~~I----dt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ..|.. .+... ..+ ..+.. ....|+    + ...++++|    |+ +.+++++.++|.+.+...
T Consensus       169 ~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~-~~s~e~v~~~I~~~l~~~  234 (252)
T 1uj2_A          169 VLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADN-LVAINLIVQHIQDILNGG  234 (252)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGC-HHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCC-hhHHHHHHHHHHHHHccc
Confidence            76521 00000 000 00110 000011    1 13467888    77 678999999999988753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.30  E-value=1.1e-11  Score=105.32  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=66.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-cccc--------------CCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INAN--------------LAFSEEDRNENVRRAA   84 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~--------------~~~~~~~~~~~~~~i~   84 (272)
                      .++++|+|+|+|||||||+|+.|++.+     ++.+++.|++.+. +..+              .....+    .   +.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~----~---~~   81 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDE----M---VL   81 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH----H---HH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHH----H---HH
Confidence            356789999999999999999999999     5667887654321 1110              001110    0   11


Q ss_pred             HHHHHHHh---CCCeEEEcCCCCcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhh
Q psy17388         85 ECAKMFAE---CGFIALCSFVSPTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        85 ~~~~~~~~---~g~~VI~d~~~~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      .++...+.   .+..+|+|+..........+..++... ..+.++|||++|++++.+|+..|
T Consensus        82 ~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R  143 (233)
T 1ak2_A           82 ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR  143 (233)
T ss_dssp             HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTC
T ss_pred             HHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            12222222   233466665322223334444444322 23568899999999999999765

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.28  E-value=4.3e-12  Score=106.31  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +|.+|+|+|++||||||+++.|++.+     ++.++|.|.+.
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~-----g~~~~~~d~~~   38 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASEL-----SMIYVDTGAMY   38 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc-----CCceecCChHH
Confidence            46789999999999999999999998     56678877664

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.28  E-value=1.5e-11  Score=103.48  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC---cc-----ccccccccC-CCCHHHHHHHH--HH--HHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG---DN-----LRNGINANL-AFSEEDRNENV--RR--AAECA   87 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~---D~-----i~~~l~~~~-~~~~~~~~~~~--~~--i~~~~   87 (272)
                      +|.+|+|.|++||||||+++.|++.|..   ++..+..   +.     ++..+.... .+++....-.+  .+  ..+.+
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I   80 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI   80 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999942   2322221   10     111111111 12221110000  01  12345


Q ss_pred             HHHHhCCCeEEEcCCCCcH-----------HHHHHHHHHHHhCCCceEEEEE-eCCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388         88 KMFAECGFIALCSFVSPTA-----------AARDRAREIHRNANLEFFEVFV-NTPVEICEQRDVKGHYKKAREGKIKSF  155 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~-----------~~r~~~~~~~~~~g~~~~~V~L-~~~~e~~~~Rl~~r~~~~~r~~~~~~~  155 (272)
                      +..++.|.+||+|......           ...+++..+......|.++||| ++|++++.+|+.++.   .|-.....+
T Consensus        81 ~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~---dr~E~~~f~  157 (216)
T 3tmk_A           81 KKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---ERYETVKFQ  157 (216)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC---CTTCCHHHH
T ss_pred             HHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc---ccccHHHHH
Confidence            5667889999998532110           0112333322222358899999 999999999985321   111111112


Q ss_pred             ccccccCCC--------CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        156 TGVSQPYEA--------PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       156 ~~~~~~ye~--------~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..++..|..        ....-++||+++.+++++.++|.+.+.+
T Consensus       158 ~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~  202 (216)
T 3tmk_A          158 EKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP  202 (216)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            223333321        1123477885678999999999988875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.27  E-value=2.7e-13  Score=112.89  Aligned_cols=164  Identities=13%  Similarity=0.139  Sum_probs=84.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-c-----------------CCCEEEecCccccccccccC-CCCHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-Q-----------------GIPAYALDGDNLRNGINANL-AFSEEDRNENV   80 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~-----------------g~~~~~ld~D~i~~~l~~~~-~~~~~~~~~~~   80 (272)
                      .+|.+|+|+|+|||||||+++.|++.++. .                 |....+++.|.+......+. ..........+
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY   89 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence            36789999999999999999999998731 0                 00112222222211110000 00000000000


Q ss_pred             HHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEe-CCHHHHHHhhhhhhhhhhhhccccc-ccc
Q psy17388         81 RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIKS-FTG  157 (272)
Q Consensus        81 ~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~  157 (272)
                      ......+...++.|..||++...   .....++   ...+ ...++|||+ +|.+++.+|+.+|....  ...+.. +..
T Consensus        90 ~~~~~~i~~~l~~g~~vi~d~~~---~~~~~l~---~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~--~~~i~~rl~~  161 (204)
T 2qor_A           90 GTLKSEYDLAVGEGKICLFEMNI---NGVKQLK---ESKHIQDGIYIFVKPPSIDILLGRLKNRNTEK--PEEINKRMQE  161 (204)
T ss_dssp             EEEHHHHHHHHHTTCEEEEECCH---HHHHHHH---HCSSCSCCEEEEEECSCHHHHHHHHHTCTTSC--HHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCeEEEEECH---HHHHHHH---HhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCC--HHHHHHHHHH
Confidence            00012334456688888887421   1122222   2221 134789998 99999999997653210  001110 111


Q ss_pred             ccccCC--CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        158 VSQPYE--APKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       158 ~~~~ye--~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .+..+.  ....++++|+++  ++++++++|.+.|...
T Consensus       162 ~~~~~~~~~~~~~d~vi~n~--~~e~~~~~i~~~i~~~  197 (204)
T 2qor_A          162 LTREMDEADKVGFNYFIVND--DLARTYAELREYLLGS  197 (204)
T ss_dssp             HHHHHHHHHHHTCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCcEEEECc--CHHHHHHHHHHHHHHH
Confidence            111111  012457778775  8999999999998753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.27  E-value=1.5e-11  Score=101.64  Aligned_cols=163  Identities=11%  Similarity=0.098  Sum_probs=85.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--------ccccccccCCCCHHHHHHHH---HHH--HHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--------LRNGINANLAFSEEDRNENV---RRA--AECA   87 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--------i~~~l~~~~~~~~~~~~~~~---~~i--~~~~   87 (272)
                      +|++|+|+|+|||||||+++.|++.+  .|+++..++...        ++..+.....+..... ..+   .+.  ...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~~~i   79 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFASFI   79 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHH
Confidence            57899999999999999999999987  234555444211        0111111112332211 110   010  1223


Q ss_pred             HHHHhCCCeEEEcCCCCcH--------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccc
Q psy17388         88 KMFAECGFIALCSFVSPTA--------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVS  159 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~--------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~  159 (272)
                      ...+..|..||+|......        ...+.+..+......+..+|||++|++++.+   +|.  ..+.........+.
T Consensus        80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~--~d~~e~~~~~~rl~  154 (204)
T 2v54_A           80 QEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVG--EEIYEDVTFQQKVL  154 (204)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCS--SSTTCCSHHHHHHH
T ss_pred             HHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcC--cccccHHHHHHHHH
Confidence            3445678888887532100        0022333332222235678999999999987   121  01100000111122


Q ss_pred             ccCCC----CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        160 QPYEA----PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       160 ~~ye~----~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..|..    .....++||+ +.+++++.++|.+.+.+
T Consensus       155 ~~y~~~~~~~~~~~~~Id~-~~~~~~v~~~i~~~l~~  190 (204)
T 2v54_A          155 QEYKKMIEEGDIHWQIISS-EFEEDVKKELIKNIVIE  190 (204)
T ss_dssp             HHHHHHHTTCSSCEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            23321    1123367776 57999999999988865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.27  E-value=1.5e-11  Score=100.61  Aligned_cols=166  Identities=13%  Similarity=0.158  Sum_probs=96.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--cCCCCHHHHH---HHHHHHHHHHHHHHhCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--NLAFSEEDRN---ENVRRAAECAKMFAECG   94 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--~~~~~~~~~~---~~~~~i~~~~~~~~~~g   94 (272)
                      .+|.+|+|+|+|||||||+++.|+..+   +.+.+++++|.+......  ..++..+...   ...+.+...+..+...|
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~   83 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEG   83 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccC
Confidence            467899999999999999999999874   556778999877543221  1223222111   11222222333344566


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC-CCCcEEEe
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP-KNPDLILE  173 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~-~~~~~~Id  173 (272)
                      ..++.+..... ..+..+.    ..+.++..+++.++.+++.+|...|.....  ........+...+... ..++++|+
T Consensus        84 ~~~~~~~~~~~-~~l~~~~----~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--ld~~~~~~~~~~~~~l~~~~~~~i~  156 (191)
T 1zp6_A           84 YFVILDGVVRP-DWLPAFT----ALARPLHYIVLRTTAAEAIERCLDRGGDSL--SDPLVVADLHSQFADLGAFEHHVLP  156 (191)
T ss_dssp             CEEEECSCCCT-TTTHHHH----TTCSCEEEEEEECCHHHHHHHHHTTCTTSC--CCHHHHHHHHHHTTCCGGGGGGEEE
T ss_pred             CeEEEeccCcH-HHHHHHH----hcCCCeEEEEecCCHHHHHHHHHhcCCCcc--CCHHHHHHHHHHHhccCcccccEEE
Confidence            66666653221 1112221    113355779999999999999865421000  0000011111112211 12357899


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC
Q psy17388        174 TVNVPVEKCANSVLDMIAAKGL  195 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~~~~  195 (272)
                      |++.++++++++|.+.+....+
T Consensus       157 t~~~~~~~~~~~i~~~l~~~~~  178 (191)
T 1zp6_A          157 VSGKDTDQALQSAINALQSGRF  178 (191)
T ss_dssp             CTTCCTTTTTTTTHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhhhh
Confidence            9888999999999999987644

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.26  E-value=1.7e-11  Score=107.31  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=83.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---------------cc----C-----------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---------------AN----L-----------   69 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---------------~~----~-----------   69 (272)
                      .++.+|+|+|+|||||||+|+.|+ .+     ++.++|.|.+...+.               ..    .           
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~l-----g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~  146 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NL-----GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSR  146 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HH-----TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HC-----CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHH
Confidence            357899999999999999999999 56     456678776521100               00    0           


Q ss_pred             CCCHHHHHHHHHH---------HHHHHHHHHhCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388         70 AFSEEDRNENVRR---------AAECAKMFAECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD  139 (272)
Q Consensus        70 ~~~~~~~~~~~~~---------i~~~~~~~~~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl  139 (272)
                      .|.......++..         +......+...+ .+||+++......   .+.   ..   ...+|||+||++++.+|+
T Consensus       147 vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~---~d~vI~l~a~~ev~~~Rl  217 (281)
T 2f6r_A          147 VFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ---SM---VHEVWTVVIPETEAVRRI  217 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG---GG---CSEEEEEECCHHHHHHHH
T ss_pred             HhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH---Hh---CCEEEEEcCCHHHHHHHH
Confidence            0221111111111         111222222333 4677776433211   111   11   237899999999999999


Q ss_pred             hhhhhhhhhhcccccc-ccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        140 VKGHYKKAREGKIKSF-TGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       140 ~~r~~~~~r~~~~~~~-~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+|..   +.  .+.+ ..+..++.   ....++++||++. +++++.++|.+.+.+
T Consensus       218 ~~R~g---~s--~e~~~~ri~~q~~~~~~~~~AD~vIdn~~-s~eel~~~I~~~l~~  268 (281)
T 2f6r_A          218 VERDG---LS--EAAAQSRLQSQMSGQQLVEQSNVVLSTLW-ESHVTQSQVEKAWNL  268 (281)
T ss_dssp             HHHHC---CC--HHHHHHHHHTSCCHHHHHHTCSEEEECSS-CHHHHHHHHHHHHHH
T ss_pred             HHcCC---CC--HHHHHHHHHHcCChHhhHhhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            66520   00  0000 01111111   0124679999874 999999999888764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.25  E-value=4.3e-11  Score=100.06  Aligned_cols=114  Identities=15%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHH--------HHHHHHHHHHhC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVR--------RAAECAKMFAEC   93 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~   93 (272)
                      ++|+|.|+|||||+|+|+.|++.+     ++.++++ |.+|+.+..+....... ...+.        -+..+....+..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR~~i~~~t~lg~~~-~~~~~~G~lvpd~iv~~lv~~~l~~   74 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILREAVQKGTPLGKKA-KEYMERGELVPDDLIIALIEEVFPK   74 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHHTCHHHHHH-HHHHHHTCCCCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHHHHHHhcChhhhhH-HHHHhcCCcCCHHHHHHHHHHhhcc
Confidence            579999999999999999999999     6778885 44454332211100000 00000        112222333333


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhh
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ...+|.|+.--.....+.+...+...+. ...+|+|++|.+++.+|+..|
T Consensus        75 ~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R  124 (206)
T 3sr0_A           75 HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR  124 (206)
T ss_dssp             SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence            3346666433333444555555555554 347899999999999999766

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.25  E-value=6e-11  Score=100.84  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=33.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++.+|.|+|++||||||+++.|++.+     ++.++|.|.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d~~~   51 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMY   51 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc-----CCceecCCCee
Confidence            677899999999999999999999999     56678877664

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.23  E-value=4.3e-12  Score=106.38  Aligned_cols=151  Identities=10%  Similarity=0.106  Sum_probs=81.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c-------------------cCCCCH-------
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A-------------------NLAFSE-------   73 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~-------------------~~~~~~-------   73 (272)
                      ++.+|+|+|++||||||+++.|++ +     +..++|.|.+...+. .                   +-.+..       
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~   76 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-L-----GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERI   76 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHH
Confidence            468999999999999999999998 6     456778776532111 0                   000111       


Q ss_pred             ---HHHHHHHHHHH-----H-HHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         74 ---EDRNENVRRAA-----E-CAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        74 ---~~~~~~~~~i~-----~-~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                         .++..++..+.     . ....+.. .+..++.+.......  . +   ...   +..+|||++|++++.+|+.+|.
T Consensus        77 f~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~--~-~---~~~---~d~vi~l~~~~e~~~~Rl~~R~  147 (218)
T 1vht_A           77 FANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVEN--S-L---YKK---ANRVLVVDVSPETQLKRTMQRD  147 (218)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTT--T-G---GGG---CSEEEEEECCHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeecc--C-c---ccc---CCEEEEEECCHHHHHHHHHHcC
Confidence               11111111110     0 0111122 344555554221111  0 1   111   3378999999999999996552


Q ss_pred             -hhhhhhcccccccccccc---CCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        144 -YKKAREGKIKSFTGVSQP---YEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       144 -~~~~r~~~~~~~~~~~~~---ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       ...   ..+..  .+..+   ++....++++||++. +++++.++|.+.+..
T Consensus       148 ~~~~---~~~~~--~~~~~~~~~~~~~~ad~vId~~~-~~~~~~~~I~~~l~~  194 (218)
T 1vht_A          148 DVTR---EHVEQ--ILAAQATREARLAVADDVIDNNG-APDAIASDVARLHAH  194 (218)
T ss_dssp             TCCH---HHHHH--HHHHSCCHHHHHHHCSEEEECSS-CTTSHHHHHHHHHHH
T ss_pred             CCCH---HHHHH--HHHhcCChHHHHHhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence             100   00000  01111   111123579999876 999999999888764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.22  E-value=7.2e-12  Score=104.04  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc--------------ccCCCCH---------------
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN--------------ANLAFSE---------------   73 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~--------------~~~~~~~---------------   73 (272)
                      .+|.|+|++||||||+++.|+. +   |  ..++|.|.+.+.+.              ....+..               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~   76 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFN   76 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhC
Confidence            5899999999999999999987 5   4  55678877643211              0001110               


Q ss_pred             -HHHHHHHHHHH-----H-HHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-h
Q psy17388         74 -EDRNENVRRAA-----E-CAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-Y  144 (272)
Q Consensus        74 -~~~~~~~~~i~-----~-~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~  144 (272)
                       .........+.     . +...+.. .+..||.+.......  . +   .+.   ...+|||++|++++.+|+.+|. .
T Consensus        77 ~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~--~-~---~~~---~d~vi~l~~~~e~~~~Rl~~R~~~  147 (206)
T 1jjv_A           77 HDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIEN--K-L---TAL---CDRILVVDVSPQTQLARSAQRDNN  147 (206)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTT--T-C---GGG---CSEEEEEECCHHHHHHHHC-----
T ss_pred             CHHHHHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhc--C-c---Hhh---CCEEEEEECCHHHHHHHHHHcCCC
Confidence             00000111110     0 1111211 244666554322111  0 1   111   1268999999999999997652 1


Q ss_pred             hhhhhccccccccccccCC---CCCCCcEEEeCCCCCHH----HHHHHHHHHHHh
Q psy17388        145 KKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVE----KCANSVLDMIAA  192 (272)
Q Consensus       145 ~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~e----e~~~~I~~~L~~  192 (272)
                      ..   ..+..  .+..++.   ....++++||+++ +++    ++.++|.+.+..
T Consensus       148 ~~---e~~~~--r~~~q~~~~~~~~~ad~vIdn~~-~~~~~~~~~~~~i~~~~~~  196 (206)
T 1jjv_A          148 NF---EQIQR--IMNSQVSQQERLKWADDVINNDA-ELAQNLPHLQQKVLELHQF  196 (206)
T ss_dssp             CH---HHHHH--HHHHSCCHHHHHHHCSEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CH---HHHHH--HHHhcCChHHHHHhCCEEEECCC-CccccHHHHHHHHHHHHHH
Confidence            00   00000  0111111   0124679999987 999    888888887753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.17  E-value=4.6e-12  Score=109.54  Aligned_cols=71  Identities=10%  Similarity=0.102  Sum_probs=43.6

Q ss_pred             CceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-------------ccccCCCC-CCCcEEEeCCCCCHHHHHHHH
Q psy17388        121 LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-------------VSQPYEAP-KNPDLILETVNVPVEKCANSV  186 (272)
Q Consensus       121 ~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-------------~~~~ye~~-~~~~~~Idt~~~~~ee~~~~I  186 (272)
                      .+.++|||++|++++.+|+.+|.+...+......+..             ++..|... ..+.++||++. +++++.++|
T Consensus       174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~-~~eev~~~I  252 (263)
T 1p5z_B          174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DFKDKYESL  252 (263)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCS-CHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCC-CHHHHHHHH
Confidence            3668999999999999999765321111000000111             22233211 13467888865 999999999


Q ss_pred             HHHHHh
Q psy17388        187 LDMIAA  192 (272)
Q Consensus       187 ~~~L~~  192 (272)
                      .+.|..
T Consensus       253 ~~~l~~  258 (263)
T 1p5z_B          253 VEKVKE  258 (263)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.17  E-value=2.4e-11  Score=100.60  Aligned_cols=65  Identities=15%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             EEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        124 FEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       124 ~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                      .+|||+||++++.+|+.+|.....   .+  ...+..++.   ....++++||++ .+++++.++|.+.+.+..
T Consensus       126 ~~i~l~~~~e~~~~Rl~~R~~~~~---~~--~~~~~~~~~~~~~~~~ad~vId~~-~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          126 KLIVVYAPYEVCKERAIKRGMSEE---DF--ERRWKKQMPIEEKVKYADYVIDNS-GSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             EEEEECCCHHHHHHHHHHTCCCHH---HH--HHHHTTSCCHHHHGGGCSEECCCS-SCHHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCHHHHHHHHHHcCCCHH---HH--HHHHHhCCChhHHHhcCCEEEECC-CCHHHHHHHHHHHHHHHh
Confidence            789999999999999976521110   00  011122221   112457899986 699999999999987643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.15  E-value=1.5e-11  Score=101.37  Aligned_cols=152  Identities=16%  Similarity=0.209  Sum_probs=83.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc--------C-------C----------CCHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN--------L-------A----------FSEE   74 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~--------~-------~----------~~~~   74 (272)
                      .++.+|.|+|++||||||+|+.|++.    |  +.++|.|.+......+        .       .          |...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~   79 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDP   79 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCH
Confidence            56789999999999999999999985    3  4567777653211100        0       0          1100


Q ss_pred             HHHHHHHHHH------HHHHHHHhC-CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhh
Q psy17388         75 DRNENVRRAA------ECAKMFAEC-GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKK  146 (272)
Q Consensus        75 ~~~~~~~~i~------~~~~~~~~~-g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~  146 (272)
                      ....++..+.      ......... +..||++.......   .+   ...   ...+|||++|++++.+|+.+|. ...
T Consensus        80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~---~~---~~~---~d~~i~l~~~~e~~~~R~~~R~~~~~  150 (203)
T 1uf9_A           80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEK---GW---EGR---LHGTLLVAAPLEERVRRVMARSGLSR  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTT---TC---GGG---SSEEEEECCCHHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceecc---Cc---hhh---CCEEEEEECCHHHHHHHHHHcCCCCH
Confidence            0001111110      111112233 46777764322110   11   111   2378999999999999986551 110


Q ss_pred             hhhccccccccccccCCC---CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        147 AREGKIKSFTGVSQPYEA---PKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       147 ~r~~~~~~~~~~~~~ye~---~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .   .+  ...+..++..   ...++++||++. ++++++++|.+.+..
T Consensus       151 ~---~~--~~~i~~~~~~~~~~~~ad~vId~~~-~~~~~~~~i~~~~~~  193 (203)
T 1uf9_A          151 E---EV--LARERAQMPEEEKRKRATWVLENTG-SLEDLERALKAVLAE  193 (203)
T ss_dssp             H---HH--HHHHTTSCCHHHHHHHCSEEECCSS-HHHHHHHHHHHHHHS
T ss_pred             H---HH--HHHHHHCCChhHHHHhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            0   00  0112222211   124578999876 999999999998874

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.14  E-value=1.8e-10  Score=96.32  Aligned_cols=151  Identities=14%  Similarity=0.128  Sum_probs=83.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c-------------cCCC----------------
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A-------------NLAF----------------   71 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~-------------~~~~----------------   71 (272)
                      ..-|.|+|.+||||||+++.|++ +     ++.++|.|.+.+.+. .             ...+                
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF   82 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIF   82 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHh
Confidence            45799999999999999999998 6     566788887543211 0             0011                


Q ss_pred             CHHHHHHHHHHHH------HHHHHHHhC-CCeEEEcCCCCcH-HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         72 SEEDRNENVRRAA------ECAKMFAEC-GFIALCSFVSPTA-AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        72 ~~~~~~~~~~~i~------~~~~~~~~~-g~~VI~d~~~~~~-~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      .+.....++..+.      .+.+.+.+. +..||.+...-+. ..   +...+      ..+|+++||++++.+|+.+|.
T Consensus        83 ~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~---~~~~~------D~vi~V~ap~e~r~~Rl~~Rd  153 (210)
T 4i1u_A           83 SDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRN---WKARC------DRVLVVDCPVDTQIARVMQRN  153 (210)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHH---HHHHC------SEEEEEECCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCC---ccccC------CeEEEEECCHHHHHHHHHhcC
Confidence            1111122222221      122222233 3356666533322 11   22222      278999999999999997652


Q ss_pred             -hhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        144 -YKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       144 -~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       .....   ..  ..+..+..   ....++++|+++..++++..++|.+.+..
T Consensus       154 g~s~ee---a~--~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~  201 (210)
T 4i1u_A          154 GFTREQ---VE--AIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQR  201 (210)
T ss_dssp             CCCHHH---HH--HHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             CCCHHH---HH--HHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence             11100   00  00111110   11357899998625899998888877654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.14  E-value=1.9e-10  Score=99.07  Aligned_cols=110  Identities=13%  Similarity=0.008  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc--cccc-----c------cCC-----C-CH----HHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR--NGIN-----A------NLA-----F-SE----EDRNEN   79 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~--~~l~-----~------~~~-----~-~~----~~~~~~   79 (272)
                      .+|+|+|+|||||||+|++|++.+     +..+++.|.+.  .++.     .      ..+     + ..    .....+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~-----~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f   76 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET-----GWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESA   76 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH-----CCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC-----CCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHH
Confidence            489999999999999999999998     45567777653  2221     0      000     0 00    011222


Q ss_pred             HHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHh----CCCceEEEEEeCCH-HHHHHhhhhhh
Q psy17388         80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRN----ANLEFFEVFVNTPV-EICEQRDVKGH  143 (272)
Q Consensus        80 ~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~----~g~~~~~V~L~~~~-e~~~~Rl~~r~  143 (272)
                      .+...... .++..|..+|+++...  .   .++.++..    .+..+.+|||++|. +++.+|+.+|.
T Consensus        77 ~~~~~~~i-~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           77 HRRLIFEV-DWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             HHHHHHHH-HTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHhCCCCeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            23333333 4456777666554332  2   33444554    55677889999997 99999998774

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.13  E-value=1.3e-10  Score=97.25  Aligned_cols=111  Identities=14%  Similarity=0.067  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHH-------HHHHHHHHHHHHhC--
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNEN-------VRRAAECAKMFAEC--   93 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~--   93 (272)
                      .|+|+|+|||||||+|+.|++.+   |  ..+++.|.+ ++.+..+.......+...       ...+..++...+..  
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   76 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY---G--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED   76 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH---C--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            58999999999999999999998   4  455666443 332111111110000000       00111222222222  


Q ss_pred             -CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         94 -GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        94 -g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                       +..+|+|+......   ....+......+..+|||++|++++.+|+.+|
T Consensus        77 ~~~~~i~dg~~~~~~---~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R  123 (214)
T 1e4v_A           77 CRNGFLLDGFPRTIP---QADAMKEAGINVDYVLEFDVPDELIVDRIVGR  123 (214)
T ss_dssp             GGGCEEEESCCCSHH---HHHHHHHTTCCCSEEEEEECCHHHHHHHHHTE
T ss_pred             cCCCEEEeCCCCCHH---HHHHHHhcCCCCCEEEEEECCHHHHHHHHHCC
Confidence             23566665322222   22222222123457899999999999998655

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.12  E-value=6.9e-11  Score=98.21  Aligned_cols=157  Identities=13%  Similarity=0.096  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc----cCCCCH------HHHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA----NLAFSE------EDRNENVRRAAECAKM   89 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~----~~~~~~------~~~~~~~~~i~~~~~~   89 (272)
                      .++.+|+|+|++||||||+++.|++.+.    ++.+++.|.+...-..    ...+..      .++......+......
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~   94 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES   94 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence            4578999999999999999999998762    4777888776431110    011110      0111111111111111


Q ss_pred             H-----------HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccc-
Q psy17388         90 F-----------AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFT-  156 (272)
Q Consensus        90 ~-----------~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~-  156 (272)
                      .           ......||+++...+. . +.+   .   .....+||+++|++++.+|+..|.+..   .... .+. 
T Consensus        95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~-~~~---~---~~~d~~i~l~~~~~~~~~R~~~R~~~~---e~~~~~~~~  163 (207)
T 2qt1_A           95 ARHSVVSTDQESAEEIPILIIEGFLLFN-Y-KPL---D---TIWNRSYFLTIPYEECKRRRSTRVYQP---PDSPGYFDG  163 (207)
T ss_dssp             HTTSSCCC-----CCCCEEEEECTTCTT-C-GGG---T---TTCSEEEEEECCHHHHHHHHHHSCCSS---CCCTTHHHH
T ss_pred             CCCCCcCCCeeecCCCCEEEEeehHHcC-c-HHH---H---HhcCeeEEEECCHHHHHHHHHHcCCCc---cchHHHHHH
Confidence            1           0123466666543211 1 011   1   123478999999999999985543211   0000 011 


Q ss_pred             c-------ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        157 G-------VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       157 ~-------~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .       ....++.....-+.||++ .+++++.++|.+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~v~~Id~~-~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          164 HVWPMYLKYRQEMQDITWEVVYLDGT-KSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             THHHHHHHHHHHGGGCSSCCEEEETT-SCHHHHHHHHHHHHTT
T ss_pred             HHhHHHHHHHHHHHhcCCeEEEecCC-CCHHHHHHHHHHHHHh
Confidence            1       111223222333668875 6999999999998864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.10  E-value=1.4e-09  Score=89.75  Aligned_cols=157  Identities=14%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc----ccccCCCCHHHHHHHHHHHH-----------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG----INANLAFSEEDRNENVRRAA-----------   84 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~----l~~~~~~~~~~~~~~~~~i~-----------   84 (272)
                      .+|.+|.|+|++||||||+++.|+..+     +...++.......    .....+|...+... +..+.           
T Consensus         5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   78 (205)
T 3tr0_A            5 NKANLFIISAPSGAGKTSLVRALVKAL-----AEIKISISHTTRPKRPGDQEGVDYFFIDETR-FQAMVKEGAFLEHATI   78 (205)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHS-----SSEEECCCEECSCCCTTCCBTTTBEECCHHH-HHHHHHHTCEEEEEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC-----CCeEEeceeccCCCchhHhcCceEEeccHHH-HHHHHhcCcEEeeeee
Confidence            367899999999999999999999876     2334443322111    11111111111111 11111           


Q ss_pred             ---------HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccc
Q psy17388         85 ---------ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKS  154 (272)
Q Consensus        85 ---------~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~  154 (272)
                               ..+...++.|..++++.. +  .....++.   ... ....||+.+ |.+++.+|+.+|...  ....+..
T Consensus        79 ~~~~~~~~~~~i~~~l~~g~~vi~d~~-~--~~~~~~~~---~~~-~~~~v~~~~~~~e~l~~Rl~~R~~~--~~~~i~~  149 (205)
T 3tr0_A           79 YERHYGTEKDWVLRQLKAGRDVLLEID-W--QGARQIRE---LFP-PALSIFILPPSIEALRERLIKRRQD--DTAIIEQ  149 (205)
T ss_dssp             TTEEEEEEHHHHHHHHHTTCEEEEECC-H--HHHHHHHH---HCT-TCEEEEEECSCHHHHHHHHHTCTTS--CSSTHHH
T ss_pred             ecccccchHHHHHHHHHcCCeEEEEEC-H--HHHHHHHH---hCC-CcEEEEEECcCHHHHHHHHHHhCCC--CHHHHHH
Confidence                     234455677888877741 1  12222222   222 234566655 699999999765210  0000100


Q ss_pred             -cccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        155 -FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       155 -~~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       +.......+....++++|+++  +++++.++|.+.+...
T Consensus       150 rl~~~~~~~~~~~~~d~vi~n~--~~~~~~~~l~~~i~~~  187 (205)
T 3tr0_A          150 RLALAREEMAHYKEFDYLVVND--NFDQAVQNLIHIISAE  187 (205)
T ss_dssp             HHHHHHHHHTTGGGCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCEEEECC--CHHHHHHHHHHHHHHH
Confidence             100111111123467888865  8999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.10  E-value=8.7e-10  Score=103.06  Aligned_cols=121  Identities=21%  Similarity=0.239  Sum_probs=78.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc----CCCCHHH------HHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN----LAFSEED------RNENVRRAAECAKM   89 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~----~~~~~~~------~~~~~~~i~~~~~~   89 (272)
                      .++.+|+|+|+|||||||+++.|++.+...+++...++.|.++..+...    ..|+...      +..+.......+..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999997666677777777666543211    1122111      11111111111233


Q ss_pred             HH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhh
Q psy17388         90 FA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDV  140 (272)
Q Consensus        90 ~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~  140 (272)
                      +.  ..|.++|+|..+.....|+.+.+.++..+..++.+.+.|+ ++.+.+|+.
T Consensus       117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~  170 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV  170 (469)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHH
Confidence            33  4577899999998888999998888877766644444445 677777764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.09  E-value=1.8e-10  Score=97.23  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=61.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccC------------C-CCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANL------------A-FSEEDRNENVRRAAE   85 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~------------~-~~~~~~~~~~~~i~~   85 (272)
                      .++++|+|+|+|||||||+|+.|++.+     +..+++.|.+... ...+.            + +..  +......   
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~--~~~~~~~---   74 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIP--DDVMTRL---   74 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC--HHHHHHH---
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCC--HHHHHHH---
Confidence            456899999999999999999999998     5667777554321 11000            0 000  0011111   


Q ss_pred             HHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         86 CAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        86 ~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +...+.+ .+..+|+|...........+..+    ..+..+|||++|.+++.+|+.+|
T Consensus        75 ~~~~l~~~~~~~~vid~~~~~~~~~~~l~~~----~~~~~vi~L~~~~~~~~~R~~~R  128 (227)
T 1zd8_A           75 ALHELKNLTQYSWLLDGFPRTLPQAEALDRA----YQIDTVINLNVPFEVIKQRLTAR  128 (227)
T ss_dssp             HHHHHHTCTTSCEEEESCCCSHHHHHHHHTT----SCCCEEEEEECCHHHHHHHHTCE
T ss_pred             HHHHHhcccCCCEEEeCCCCCHHHHHHHHHh----cCCCEEEEEECCHHHHHHHHHcC
Confidence            1122222 24456666543332222222211    22447899999999999999765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.01  E-value=8.6e-11  Score=100.11  Aligned_cols=27  Identities=15%  Similarity=0.075  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +|++|+|.|.+||||||+++.|++.+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999999983

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.00  E-value=2e-09  Score=88.79  Aligned_cols=158  Identities=16%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc----c-ccCCCCHHHHHHHH-H------------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI----N-ANLAFSEEDRNENV-R------------   81 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l----~-~~~~~~~~~~~~~~-~------------   81 (272)
                      .+|.+|+|+|++||||||+++.|+..+..   ...+.-.+..+...    . .+..|......... .            
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPST---SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVG   80 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTC---CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCC---CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECC
Confidence            46789999999999999999999987621   11101011111100    0 01111111100000 0            


Q ss_pred             ----HHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEe-CCHHHHHHhhhhhhhhhhhhccccccc
Q psy17388         82 ----RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIKSFT  156 (272)
Q Consensus        82 ----~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~~~~  156 (272)
                          .....+...++.|..||++.....   ...++...   + ..+.||+. ++.+++.+|+..|....  ...+..  
T Consensus        81 ~~~g~~~~~i~~~l~~g~~vv~d~~~~~---~~~~~~~~---~-~~~~i~~~~~~~~~~~~Rl~~R~~~~--~~~~~~--  149 (207)
T 2j41_A           81 NYYGTPVQYVKDTMDEGHDVFLEIEVEG---AKQVRKKF---P-DALFIFLAPPSLEHLRERLVGRGTES--DEKIQS--  149 (207)
T ss_dssp             EEEEEEHHHHHHHHHTTCEEEEECCGGG---HHHHHHHC---T-TSEEEEEECCC-------------------------
T ss_pred             eecCCCHHHHHHHHHcCCeEEEEECHHH---HHHHHHhc---C-CeEEEEEECCCHHHHHHHHHhcCCCC--HHHHHH--
Confidence                001223444566888888764322   12233222   1 22445554 67899999996652110  001110  


Q ss_pred             ccccc---CCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        157 GVSQP---YEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       157 ~~~~~---ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .+...   .+....++++|+++  +++++.++|.+.+...
T Consensus       150 rl~~~~~~~~~~~~~d~vI~n~--~~e~~~~~i~~~l~~~  187 (207)
T 2j41_A          150 RINEARKEVEMMNLYDYVVVND--EVELAKNRIQCIVEAE  187 (207)
T ss_dssp             ------CGGGGGGGCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCEEEECC--CHHHHHHHHHHHHHHh
Confidence            11111   11123457888875  8999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.97  E-value=3.1e-09  Score=94.75  Aligned_cols=117  Identities=13%  Similarity=0.148  Sum_probs=71.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc--cccccc------------------c-CCC--CHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINA------------------N-LAF--SEEDR   76 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i--~~~l~~------------------~-~~~--~~~~~   76 (272)
                      .++.+|+|+|++||||||+|..|++++     +..++|.|.+  ..++..                  + ..+  .....
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~  112 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTP  112 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCH
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCH
Confidence            345799999999999999999999998     6777887765  222210                  0 001  11111


Q ss_pred             HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHH-H-----------------HHhCCCceEEEEEeCCHHHHHHh
Q psy17388         77 NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRARE-I-----------------HRNANLEFFEVFVNTPVEICEQR  138 (272)
Q Consensus        77 ~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~-~-----------------~~~~g~~~~~V~L~~~~e~~~~R  138 (272)
                      ..+.+.....+..+...|..+|+.++..  .+.+.+.. +                 ........++|||+++.+++.+|
T Consensus       113 ~~F~~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~R  190 (339)
T 3a8t_A          113 ADFRSLAGKAVSEITGRRKLPVLVGGSN--SFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDY  190 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHH
Confidence            2333334455566777887776654443  22222111 0                 00112356889999999999999


Q ss_pred             hhhhh
Q psy17388        139 DVKGH  143 (272)
Q Consensus       139 l~~r~  143 (272)
                      +.+|.
T Consensus       191 I~~R~  195 (339)
T 3a8t_A          191 LAKRV  195 (339)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            98774

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.94  E-value=6.5e-10  Score=92.65  Aligned_cols=160  Identities=9%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCCCHHHHHHHHHHH-------------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAFSEEDRNENVRRA-------------   83 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~~~~~~~~~~~~i-------------   83 (272)
                      .+|.+|+|+|++||||||+++.|+..++.   .........-+....   .+..|...+.......+             
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~---~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~   82 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET---SFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVG   82 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC---CCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC---cEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEcc
Confidence            46789999999999999999999988731   122221111111100   01111100111111100             


Q ss_pred             ------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccc-c
Q psy17388         84 ------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKS-F  155 (272)
Q Consensus        84 ------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~-~  155 (272)
                            ...+...++.|..||++.- .  .....+   ......+ ..||+.+ +.+++.+|+.+|....  ...+.. +
T Consensus        83 ~~yg~~~~~i~~~l~~g~~vild~~-~--~g~~~~---~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~~~--~e~i~~Rl  153 (208)
T 3tau_A           83 NYYGTPLEYVEEKLAAGVDIFLEIE-V--QGAMQV---RKAMPEG-IFIFLTPPDLSELKNRIIGRGTES--MEVVEERM  153 (208)
T ss_dssp             EEEEEEHHHHHHHHHTTCCEEEECC-H--HHHHHH---HHHCTTS-EEEEEECTTTTTSSCC-------C--CHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHcCCeEEEEee-H--HHHHHH---HHhCCCe-EEEEEeCCCHHHHHHHHHhcCCCC--HHHHHHHH
Confidence                  1224556678888887641 1  222222   2233323 4566665 4899999987653110  000000 0


Q ss_pred             ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ............++++|+++  ++++++++|.+.+...
T Consensus       154 ~~~~~e~~~~~~~d~vivN~--~~~~~~~~l~~~i~~~  189 (208)
T 3tau_A          154 ETAKKEIEMMASYDYAVVND--VVANAVQKIKGIVETE  189 (208)
T ss_dssp             HHHHHHHHHGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence            00000001112457777765  6999999999998764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.89  E-value=1.9e-09  Score=91.25  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=29.5

Q ss_pred             CceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC-------CCCC-cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        121 LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA-------PKNP-DLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       121 ~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~-------~~~~-~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+.++|||++|++++.+|+.+|.+...+.........++..|+.       .... .++||+ +.+++++.++|.+.+.+
T Consensus       146 ~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-~~~~eev~~~I~~~l~~  224 (230)
T 2vp4_A          146 QADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-DLNLENIGTEYQRSESS  224 (230)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-CC---------------
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            47789999999999999986653211110000111222222221       1112 367886 56999999999888764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.83  E-value=7.6e-10  Score=91.91  Aligned_cols=164  Identities=15%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec---------Ccccccccccc---CCCCHHHHHHHHH---HH--HH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD---------GDNLRNGINAN---LAFSEEDRNENVR---RA--AE   85 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld---------~D~i~~~l~~~---~~~~~~~~~~~~~---~i--~~   85 (272)
                      ++|+|+|++||||||+++.|++.+...|+.+.++.         ++.++..+...   ...+.. ....+.   +.  ..
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~   79 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVY-AMATLFALDRAGAVH   79 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHH-HHHHHHHHHHHEEHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHh-HHHHHHHHHHhhhHH
Confidence            47999999999999999999999975555554443         22232222111   001111 111111   00  11


Q ss_pred             HHHHHHhCCCeEEEcCCCCcH--------------HHHHHHHHHHH---hCCCceEEEEEeCCHHHHHHhhhhhhhh-hh
Q psy17388         86 CAKMFAECGFIALCSFVSPTA--------------AARDRAREIHR---NANLEFFEVFVNTPVEICEQRDVKGHYK-KA  147 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~--------------~~r~~~~~~~~---~~g~~~~~V~L~~~~e~~~~Rl~~r~~~-~~  147 (272)
                      .+...+..|.+||+|......              .+.+.+..+..   ....+..+|||++|++++.+|+.+|... ..
T Consensus        80 ~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~  159 (214)
T 1gtv_A           80 TIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPG  159 (214)
T ss_dssp             HHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBE
T ss_pred             HHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccc
Confidence            223334567788887543211              01222333220   1124678999999999999999766321 00


Q ss_pred             hh-cccc---c-cccccccCCCCC-----CCcEEEeCCCCCHHHHHHHHHH
Q psy17388        148 RE-GKIK---S-FTGVSQPYEAPK-----NPDLILETVNVPVEKCANSVLD  188 (272)
Q Consensus       148 r~-~~~~---~-~~~~~~~ye~~~-----~~~~~Idt~~~~~ee~~~~I~~  188 (272)
                      +. ...+   . ...+...|....     ...++||++ .+++++.++|.+
T Consensus       160 ~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~-~~~~~v~~~i~~  209 (214)
T 1gtv_A          160 RARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGAD-VDPGRLAATLAP  209 (214)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-EBHHHHHHHHC-
T ss_pred             cccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCC-CCHHHHHHHhcC
Confidence            00 0100   1 111223332211     123677764 688888888753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.78  E-value=1.6e-08  Score=85.60  Aligned_cols=107  Identities=15%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-ccccccc--------------CCCCHHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINAN--------------LAFSEEDRNENVRRAAEC   86 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~--------------~~~~~~~~~~~~~~i~~~   86 (272)
                      -+-+.|.|+|||||||+|+.|++.+     ++.+++.+++ +..+..+              ....+   ......+.  
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpd---ei~~~ll~--   77 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKF-----GIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD---SLIIGLVK--   77 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHH-----TCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH---HHHHHHHH--
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHh-----CCCeeechHHHHHhccCCChHHHHHHHHHhhcccccc---HHHHHHHH--
Confidence            3567899999999999999999999     5667887543 4322211              00111   01111111  


Q ss_pred             HHHHHh--CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         87 AKMFAE--CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        87 ~~~~~~--~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                       ..+.+  ....+|.|+. |.  ...+...+......+..+|+|++|.+++.+|+.+|
T Consensus        78 -~~l~~~~~~~g~ILDGf-PR--t~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R  131 (230)
T 3gmt_A           78 -ERLKEADCANGYLFDGF-PR--TIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGR  131 (230)
T ss_dssp             -HHHHSGGGTTCEEEESC-CC--SHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTE
T ss_pred             -HHHhCcccCCCeEecCC-CC--cHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcC
Confidence             11211  1223455642 32  12222222222223457899999999999999766

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.78  E-value=4.6e-09  Score=85.40  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.+|+|+|++||||||+++.|...+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            567899999999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.73  E-value=2e-08  Score=82.37  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---cccc--cCCCCHHHHHHHHHHH---------------
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GINA--NLAFSEEDRNENVRRA---------------   83 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~~--~~~~~~~~~~~~~~~i---------------   83 (272)
                      .|+|+|||||||||+++.|.+.++.   .+.+.-+..-|.   +-..  ++-|-.  ..+..+.+               
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~---~~~~svs~TTR~pR~gE~~G~dY~Fvs--~~eF~~~i~~g~flE~~~~~g~~   77 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPD---SFGFSVSSTTRTPRAGEVNGKDYNFVS--VDEFKSMIKNNEFIEWAQFSGNY   77 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTT---TEEECCCEECSCCCTTCCBTTTBEECC--HHHHHHHHHTTCEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCC---CeEEEEEEeccCCCCCCcCCceeEeec--HHHHHHHHHcCCEEEEEEEcCce
Confidence            4899999999999999999887631   122111111111   1101  111111  11111111               


Q ss_pred             ----HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEE-eCCHHHHHHhhhhhhhhhhhhccccc-ccc
Q psy17388         84 ----AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFV-NTPVEICEQRDVKGHYKKAREGKIKS-FTG  157 (272)
Q Consensus        84 ----~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L-~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~  157 (272)
                          .......+++|..||++. ..  .....++..   .+.....||+ ..+.+++.+|+.+|.....  ..+.. +..
T Consensus        78 YGt~~~~v~~~l~~g~~vil~i-d~--~g~~~~k~~---~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~--e~i~~Rl~~  149 (186)
T 1ex7_A           78 YGSTVASVKQVSKSGKTCILDI-DM--QGVKSVKAI---PELNARFLFIAPPSVEDLKKRLEGRGTETE--ESINKRLSA  149 (186)
T ss_dssp             EEEEHHHHHHHHHHTSEEEEEC-CH--HHHHHHHTC---GGGCCEEEEEECSCHHHHHHHHHHHCCSCH--HHHHHHHHH
T ss_pred             eeeecceeeehhhCCCEEEecC-CH--HHHHHHHHh---cccCceEEEEeCCCHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence                123445567788888773 22  222233322   2222344555 5578999999976632100  00100 000


Q ss_pred             ccc--cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        158 VSQ--PYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       158 ~~~--~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ...  .+......|.+|.++  ++++++++|.+.|.+
T Consensus       150 a~~e~~~~~~~~fD~vIvNd--dle~a~~~l~~iI~a  184 (186)
T 1ex7_A          150 AQAELAYAETGAHDKVIVND--DLDKAYKELKDFIFA  184 (186)
T ss_dssp             HHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHTT
T ss_pred             HHHHHhhccccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence            000  011122346777654  799999999988864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.72  E-value=1.6e-08  Score=83.67  Aligned_cols=45  Identities=29%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..++.+|.|+|++||||||+++.|+..+...|..+.+++.|.+..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~   63 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV   63 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence            457899999999999999999999999877777888887776654

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.71  E-value=2.3e-07  Score=76.74  Aligned_cols=158  Identities=19%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-Cccccccccc--cCCCCH---------HHH---HHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINA--NLAFSE---------EDR---NENVRRA   83 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~--~~~~~~---------~~~---~~~~~~i   83 (272)
                      ..+..+|.|+|.|||||+|+|+.+.+.++..  .+..+. +|.+++....  ++.+..         ..|   ..+.+.+
T Consensus         8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~   85 (202)
T 3ch4_B            8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEK   85 (202)
T ss_dssp             CCCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHH
Confidence            3577899999999999999999999977221  233333 3544432211  111111         111   1111111


Q ss_pred             HH-----HHHHHHhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccc
Q psy17388         84 AE-----CAKMFAEC--GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFT  156 (272)
Q Consensus        84 ~~-----~~~~~~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~  156 (272)
                      ..     +++...+.  ..++|++.+... ...+.++...   |..+++|.+.++++++.+|...+.  ..+.... .-.
T Consensus        86 R~~d~~~~~~~~~~~~~~~~vII~dvR~~-~Ev~~fr~~~---g~~~~iirI~as~~~R~~Rg~~~~--~~~Dd~e-sE~  158 (202)
T 3ch4_B           86 RQADPGFFCRKIVEGISQPIWLVSDTRRV-SDIQWFREAY---GAVTQTVRVVALEQSRQQRGWVFT--PGVDDAE-SEC  158 (202)
T ss_dssp             HHHCTTTTHHHHSBTCCCSEEEECCCCSH-HHHHHHHHHH---GGGEEEEEEEECHHHHHHTTCCCC--TTTTTSH-HHH
T ss_pred             HhcCchHHHHHHHHhcCCCcEEEeCCCCH-HHHHHHHHhC---CCcEEEEEEECCHHHHHHHhhhcc--ccccccc-ccc
Confidence            11     12222221  125666666542 3445555443   225789999999999999952110  0010000 001


Q ss_pred             cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      ++.. +   ..+|++|++++ +.++..+++...+
T Consensus       159 gL~~-~---~~~D~vI~Ndg-t~eel~~~v~~ll  187 (202)
T 3ch4_B          159 GLDN-F---GDFDWVIENHG-VEQRLEEQLENLI  187 (202)
T ss_dssp             TTTT-C---CCCSEEEEECS-CHHHHHHHHHHHH
T ss_pred             CCCC-C---CcCCEEEEeCC-CHHHHHHHHHHHH
Confidence            1111 1   35788888764 7777666655544

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.70  E-value=1.1e-07  Score=76.55  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      .+|.++.|.|++||||||+++.+..     |  ...++.|.++..+..+. .........++.+..........|..++.
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~~-----~--~~~~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   78 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHFK-----P--TEVISSDFCRGLMSDDE-NDQTVTGAAFDVLHYIVSKRLQLGKLTVV   78 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHSC-----G--GGEEEHHHHHHHHCSST-TCGGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHcc-----C--CeEEccHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            4688999999999999999997432     1  22345555443222221 11111112233333444555667888888


Q ss_pred             cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388        100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      +..+.....+.+...+++........+++|.|...+-.|...|
T Consensus        79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R  121 (171)
T 4gp7_A           79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR  121 (171)
T ss_dssp             ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence            8777766666766677877777888999999999998886533

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.67  E-value=5e-08  Score=80.85  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +.+|.+|.|+|++||||||+++.|+..+..   .+.+++.|.+.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~   43 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYY   43 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence            357789999999999999999999998821   27778877654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.67  E-value=1.5e-07  Score=83.44  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +.+|+|+|++||||||+|+.|++.+     +..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence            4689999999999999999999998     5677777754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.67  E-value=5.8e-08  Score=81.83  Aligned_cols=158  Identities=14%  Similarity=0.148  Sum_probs=68.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH-HHHHHcCCCEEEecCccccccc----cccCCCCHHHHHHHHHHH-----------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIE-SYLIAQGIPAYALDGDNLRNGI----NANLAFSEEDRNENVRRA-----------   83 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La-~~L~~~g~~~~~ld~D~i~~~l----~~~~~~~~~~~~~~~~~i-----------   83 (272)
                      .+|.+|.|+|++||||||+++.|+ ..++    + .+...+......    ..+..+....... +..+           
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~----~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~   98 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQKN----N-IVKSVSVTTRAARKGEKEGKDYYFVDREE-FLRLCSNGEIIEHAE   98 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC--------C-EEECCCEESSCCCTTCCBTTTBEECCHHH-HHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCCC----C-cccccccCCCCCCccccCCCeEEEecHHH-hhhhhhcCceehhhh
Confidence            367899999999999999999999 7762    2 222211110000    0011111000000 1110           


Q ss_pred             ---------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEE-eCCHHHHHHhhhhhhhhhhhhcccc
Q psy17388         84 ---------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFV-NTPVEICEQRDVKGHYKKAREGKIK  153 (272)
Q Consensus        84 ---------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L-~~~~e~~~~Rl~~r~~~~~r~~~~~  153 (272)
                               ...+....+.|..++.+.. .  .....+++...   .....||+ .++.+++.+|+..|...  ....+.
T Consensus        99 ~~~~~~~~~~~~i~~~~~~~~~vild~~-~--~g~~~~~~~~~---~~~~~v~v~~~~~~~l~~Rl~~R~~~--~~~~i~  170 (231)
T 3lnc_A           99 VFGNFYGVPRKNLEDNVDKGVSTLLVID-W--QGAFKFMEMMR---EHVVSIFIMPPSMEELRRRLCGRRAD--DSEVVE  170 (231)
T ss_dssp             ETTEEEEEECTTHHHHHHHTCEEEEECC-H--HHHHHHHHHSG---GGEEEEEEECSCHHHHHHC---------------
T ss_pred             hccccCCCCHHHHHHHHHcCCeEEEEcC-H--HHHHHHHHhcC---CCeEEEEEECCcHHHHHHHHHHcCCC--CHHHHH
Confidence                     0112333445666766531 1  11222333221   12355666 55899999998655210  001111


Q ss_pred             c-cccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        154 S-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       154 ~-~~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      . +.......+....++++|+++  +++++.+++.+.+...
T Consensus       171 ~rl~~~~~~~~~~~~~d~vI~n~--~~e~~~~~l~~~i~~~  209 (231)
T 3lnc_A          171 ARLKGAAFEISHCEAYDYVIVNE--DIEETADRISNILRAE  209 (231)
T ss_dssp             -CHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCCeEEEECc--CHHHHHHHHHHHHHHH
Confidence            0 111111122223568888875  6999999999988763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.67  E-value=1.3e-07  Score=79.48  Aligned_cols=162  Identities=12%  Similarity=0.059  Sum_probs=84.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEecCccccccccccCCC--CHHHHHHHHHH------------
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA---QGIPAYALDGDNLRNGINANLAF--SEEDRNENVRR------------   82 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~---~g~~~~~ld~D~i~~~l~~~~~~--~~~~~~~~~~~------------   82 (272)
                      .+|.+++|+|++||||||+.+.|...++.   .| .+ .+.+...+........|  ...........            
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v-~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~   91 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SV-SHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG   91 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CC-CEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EE-EecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence            46789999999999999999999987631   11 11 11121111111111111  11110000000            


Q ss_pred             ----H-HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccc
Q psy17388         83 ----A-AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFT  156 (272)
Q Consensus        83 ----i-~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~  156 (272)
                          . ...+...++.|.++|.| +.+  ..+..+++... .  ...++.+.-+.+.+.+|+..|....  ...+. .+.
T Consensus        92 ~~yg~~~~~v~~~l~~G~illLD-LD~--~~~~~i~~~l~-~--~~tI~i~th~~~~l~~Rl~~rG~~~--~e~i~~rl~  163 (219)
T 1s96_A           92 NYYGTSREAIEQVLATGVDVFLD-IDW--QGAQQIRQKMP-H--ARSIFILPPSKIELDRRLRGRGQDS--EEVIAKRMA  163 (219)
T ss_dssp             EEEEEEHHHHHHHHTTTCEEEEE-CCH--HHHHHHHHHCT-T--CEEEEEECSSHHHHHHHHHTTSCSC--HHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHhcCCeEEEE-ECH--HHHHHHHHHcc-C--CEEEEEECCCHHHHHHHHHHcCCCC--HHHHHHHHH
Confidence                0 12344566789999999 444  55566666554 2  2334445567899999885442100  00010 010


Q ss_pred             cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .....+......+.+|.++  +++++++++.+.+...
T Consensus       164 ~a~~e~~~~~~~d~~i~Nd--~l~~a~~~l~~ii~~~  198 (219)
T 1s96_A          164 QAVAEMSHYAEYDYLIVND--DFDTALTDLKTIIRAE  198 (219)
T ss_dssp             HHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCEEEECc--CHHHHHHHHHHHHHHH
Confidence            0001111112346777764  8999999999998754

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.59  E-value=2.6e-08  Score=87.30  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=70.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ..+.+|+|.|..||||||..+.|.+.|..+|+.+..+..-.-.           +-+..++.   .....+-..|.+||+
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~e-----------E~~~~yl~---R~~~~LP~~G~IvIf  149 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTET-----------ERGQWYFQ---RYVATFPTAGEFVLF  149 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHH-----------HHTSCTTH---HHHTTCCCTTCEEEE
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChH-----------HHhchHHH---HHHHhcccCCeEEEE
Confidence            4689999999999999999999999998777766554322100           00001111   222233367889998


Q ss_pred             cCCCC-------------cHHHHHHHHH------HHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388        100 SFVSP-------------TAAARDRARE------IHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus       100 d~~~~-------------~~~~r~~~~~------~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      |..-.             ...+...+..      ++...|.+++++||++|.++..+|+..|
T Consensus       150 DRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R  211 (304)
T 3czq_A          150 DRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDR  211 (304)
T ss_dssp             EECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHH
T ss_pred             ECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHh
Confidence            73211             1111122222      3445688999999999999999999655

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.52  E-value=2.1e-07  Score=79.22  Aligned_cols=44  Identities=16%  Similarity=0.162  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-----GIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-----g~~~~~ld~D~i~~   63 (272)
                      .++.+|.|+|++||||||+++.|+..++..     ...+.+++.|.+..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~   71 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYK   71 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCcc
Confidence            578899999999999999999999988321     11344677665543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.52  E-value=2e-06  Score=75.79  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++.+|+|+|++||||||+|..|++.+     +..+++.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence            56799999999999999999999998     5677777754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.49  E-value=2.3e-06  Score=70.60  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=26.2

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      |..+..+++.+|+|+|++||||||+.+.|.+.+
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            455566789999999999999999999999876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.45  E-value=4.3e-07  Score=77.25  Aligned_cols=27  Identities=19%  Similarity=0.331  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.+|+|+|++||||||+++.|++.+
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999999999

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.43  E-value=2.6e-07  Score=82.39  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ++++|+|.|+.||||||+++.|++.|..
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5689999999999999999999999854

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.40  E-value=4.9e-06  Score=73.22  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..|.+|+|+|++||||||+|..|++.+     +..+++.|.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS   43 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence            346799999999999999999999998     556666664

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.31  E-value=6.2e-07  Score=79.59  Aligned_cols=44  Identities=14%  Similarity=0.127  Sum_probs=34.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCcccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLR   62 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~   62 (272)
                      +.+|.+|.|+|++||||||+++.|...+..  .+..+.++..|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            356789999999999999999999998852  12356677777653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.26  E-value=4.3e-07  Score=79.52  Aligned_cols=43  Identities=21%  Similarity=0.480  Sum_probs=34.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ++.+|.|+|++||||||+|+.|++.++..|..+.+++.|.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            5678999999999999999999999865566688999998874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.22  E-value=3.6e-06  Score=75.07  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=30.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|+|+|++||||||+|+.|++.+     ++.+++.|.+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence            689999999999999999999998     5778888876

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.22  E-value=2.1e-06  Score=80.36  Aligned_cols=111  Identities=13%  Similarity=0.054  Sum_probs=70.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ...|.+|+|.|..||||+|..+.|.+.|..+|+.+..+..-.-.+.   ..+|        +   ......+-..|.++|
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~---~~~y--------l---~R~~~~lP~~G~IvI  105 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL---ERPP--------Q---WRFWRRLPPKGRTGI  105 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH---TSCT--------T---HHHHHHCCCTTCEEE
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc---cCCh--------h---hhHHHhCCCCCeEEE
Confidence            4678999999999999999999999999877776655442211110   0011        1   122333445788888


Q ss_pred             EcCCC-------------CcHH---HHHHH---HHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388         99 CSFVS-------------PTAA---ARDRA---REIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus        99 ~d~~~-------------~~~~---~r~~~---~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      .|..-             +...   ..+.+   ...+...|++++.+||++|.++..+|+..|.
T Consensus       106 fdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~  169 (500)
T 3czp_A          106 FFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALE  169 (500)
T ss_dssp             EESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC----
T ss_pred             EeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHh
Confidence            76321             1011   11222   2336677999999999999999999997663

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.19  E-value=9e-06  Score=73.38  Aligned_cols=31  Identities=16%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG   50 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g   50 (272)
                      .++++|+|.|+.||||||+++.|++.|...|
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g   77 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD   77 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            4678899999999999999999999986544

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.16  E-value=4.6e-06  Score=74.19  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQG   50 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g   50 (272)
                      ++++|+|.|+.||||||+++.|++.|...|
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g   32 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD   32 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            468999999999999999999999986544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.13  E-value=2.2e-05  Score=64.53  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++.+++|+|++||||||+.+.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            46789999999999999999999876

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.11  E-value=5.2e-06  Score=77.75  Aligned_cols=110  Identities=9%  Similarity=0.013  Sum_probs=72.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ..|.+|+|.|..||||+|..+.|.+.|..+|+.+..+..-.-.+.   ..+|-           ......+-..|.++|.
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~---~~~yl-----------~R~~~~lP~~G~i~If  363 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER---AQPYL-----------WRFWRHIPARRQFTIF  363 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH---TSCTT-----------HHHHTTCCCTTCEEEE
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh---cchHH-----------HHHHHhCCCCCeEEEE
Confidence            578999999999999999999999999888877765542211110   00111           1222334457888887


Q ss_pred             cCCCC-------------cHHHH---HH---HHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388        100 SFVSP-------------TAAAR---DR---AREIHRNANLEFFEVFVNTPVEICEQRDVKGH  143 (272)
Q Consensus       100 d~~~~-------------~~~~r---~~---~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~  143 (272)
                      |..-.             ...+.   +.   +...+...|++++.+||++|.++..+|+..|.
T Consensus       364 DRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~  426 (500)
T 3czp_A          364 DRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKERE  426 (500)
T ss_dssp             ESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             eCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHh
Confidence            73211             11111   12   22224567899999999999999999997663

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.02  E-value=3.9e-06  Score=74.88  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHH-HHHHHHHHHcC
Q psy17388         20 QSNICLLFPGLSGAGKTSIS-FQIESYLIAQG   50 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlA-r~La~~L~~~g   50 (272)
                      .++++|+|.|..||||||++ +.|++.+...|
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g   41 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN   41 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence            35789999999999999999 99999985444

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.95  E-value=3.5e-05  Score=70.20  Aligned_cols=34  Identities=21%  Similarity=0.483  Sum_probs=29.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.+|+|+|++||||||+|..|++.+     +..+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~-----~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF-----NGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH-----TEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC-----CCeEeecCc
Confidence            5689999999999999999999999     456677665

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.94  E-value=1.2e-05  Score=66.43  Aligned_cols=42  Identities=29%  Similarity=0.442  Sum_probs=32.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..++.+|.|.|++||||||+++.|+..+...|....++..|.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            467899999999999999999999999864443344554443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.92  E-value=0.00053  Score=59.52  Aligned_cols=42  Identities=24%  Similarity=0.483  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGI----PAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~----~~~~ld~D~i   61 (272)
                      .++..++|.|+||+||||+|+++++.+...+.    ++..++...+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l  110 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL  110 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence            44567999999999999999999999976543    5666765544

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.90  E-value=1.6e-05  Score=66.20  Aligned_cols=44  Identities=7%  Similarity=-0.025  Sum_probs=37.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++..++|.|++|+||||+++++++.+...+.++.+++...+..
T Consensus        50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~   93 (242)
T 3bos_A           50 DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS   93 (242)
T ss_dssp             CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            35678999999999999999999999987778888888765543

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.88  E-value=1.9e-05  Score=68.44  Aligned_cols=162  Identities=13%  Similarity=0.151  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ..+.+|+|.|..||||.++.+.|.+.|..+|+.+..+..-.-.+.   ..+|           +......+-..|.++|.
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~---~~~y-----------lwR~~~~lP~~G~I~IF  138 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEK---SHDF-----------LWRIEKQVPAAGMVGVF  138 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHH---TSCT-----------THHHHTTCCCTTCEEEE
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhh---cCCH-----------HHHHHHhCCCCCeEEEE
Confidence            368999999999999999999999999877776655432211100   0011           11233344567888887


Q ss_pred             cCCCC------------c-HHH------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-----cccc--
Q psy17388        100 SFVSP------------T-AAA------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-----GKIK--  153 (272)
Q Consensus       100 d~~~~------------~-~~~------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-----~~~~--  153 (272)
                      +..-.            . ..+      ...+...+.+.|+.++.+||++|.++..+|+..|.....+.     .++.  
T Consensus       139 dRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~D~~~r  218 (289)
T 3rhf_A          139 DRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRGDLAER  218 (289)
T ss_dssp             ESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHHHHHHH
T ss_pred             eCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHH
Confidence            63110            0 111      12233445567999999999999999999997663221111     0010  


Q ss_pred             -ccccccccCC-------CCCCCcEEEeCCCCC--HHHHHHHHHHHHHhCCC
Q psy17388        154 -SFTGVSQPYE-------APKNPDLILETVNVP--VEKCANSVLDMIAAKGL  195 (272)
Q Consensus       154 -~~~~~~~~ye-------~~~~~~~~Idt~~~~--~ee~~~~I~~~L~~~~~  195 (272)
                       .+......|+       .+..|-.+|+.++.-  --.+++.|++.|++.+.
T Consensus       219 ~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~  270 (289)
T 3rhf_A          219 AYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQL  270 (289)
T ss_dssp             TTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCC
Confidence             1111111111       233566888876533  22377788888887543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.86  E-value=1.9e-05  Score=63.54  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +..+|.|+|++||||||++..|...|..+|+++..+..|
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~   41 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   41 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence            345899999999999999999999998888887776654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.84  E-value=1.9e-05  Score=69.52  Aligned_cols=43  Identities=19%  Similarity=0.418  Sum_probs=38.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|+|+|++||||||++..|+..+...|..+.+++.|..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            5688999999999999999999999998788888888888654

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.82  E-value=0.00019  Score=60.96  Aligned_cols=67  Identities=6%  Similarity=-0.015  Sum_probs=39.5

Q ss_pred             EEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccc----cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        124 FEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQ----PYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       124 ~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~----~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .+|.++|+.++..+|+.+|......-.. +....+..    .-+....+|++|+++ .++++..++|.+.++.
T Consensus       170 ~VvVvdv~~~~qieRl~~rg~~~v~i~~-~~~~~i~~Q~se~~~k~~~AD~VI~N~-gsle~l~~qV~~ll~~  240 (241)
T 1dek_A          170 YYIVPDTRQDHEMDAARAMGATVIHVVR-PGQKSNDTHITEAGLPIRDGDLVITND-GSLEELFSKIKNTLKV  240 (241)
T ss_dssp             EEEECCCCSHHHHHHHHHTTCEEEEEEC-TTCCCSCCSGGGSCCCCCTTCEEEECC-SCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCcHHHHHHHHHCCCceEEEEC-cccchhhcCCCcccccccCCCEEEECC-CCHHHHHHHHHHHHhh
Confidence            5688899999999998654210000000 00001111    101234678999986 5999999999887753

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.81  E-value=1.8e-05  Score=62.17  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ++..++|.|++||||||++++++..+...|..+.+++...+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence            678899999999999999999999887667778888765543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.80  E-value=2.5e-05  Score=72.05  Aligned_cols=43  Identities=26%  Similarity=0.423  Sum_probs=39.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|.+|+++|++||||||++..|+..+...|..+..++.|.++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~  141 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP  141 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            5889999999999999999999999988899999999998765

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.78  E-value=1.7e-05  Score=69.34  Aligned_cols=44  Identities=23%  Similarity=0.350  Sum_probs=33.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEe-cCcccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQG--IPAYAL-DGDNLR   62 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g--~~~~~l-d~D~i~   62 (272)
                      ..+|.+|.|+|++||||||+++.|+..+...|  .++..+ ..|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            45788999999999999999999999996433  234444 666553

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.74  E-value=2.1e-05  Score=63.22  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~   60 (272)
                      ++..++|.|++|+||||++++++..+. ..|..+.+++...
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~   77 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD   77 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            468899999999999999999999886 5676666665443

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.73  E-value=2.6e-05  Score=68.04  Aligned_cols=39  Identities=21%  Similarity=0.206  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|..++|.|+||+|||++|+++++.+   |.+++.++...+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l   72 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGEL   72 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHh
Confidence            456789999999999999999999999   778887775443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.73  E-value=3e-05  Score=71.44  Aligned_cols=44  Identities=18%  Similarity=0.339  Sum_probs=39.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.+|+++|++||||||++..|+..+...|.++.+++.|..+.
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~  138 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP  138 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence            35889999999999999999999999988899999999987654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.70  E-value=3.8e-05  Score=67.53  Aligned_cols=42  Identities=12%  Similarity=0.175  Sum_probs=32.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~i   61 (272)
                      .+|.+|.|+|++||||||+++.|+..+.  ..+..+.+++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5678999999999999999999999884  22224666666554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.70  E-value=5.4e-05  Score=67.06  Aligned_cols=43  Identities=21%  Similarity=0.377  Sum_probs=38.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|+|++|+||||++..|+..+...|..+.++|.|..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            5688999999999999999999999998888899999988654

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.69  E-value=5.1e-05  Score=60.42  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=26.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ....+..++|+|++|+||||+++.+++.+..
T Consensus        39 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           39 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             TSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             hcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3345667899999999999999999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.68  E-value=4.9e-05  Score=66.60  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=38.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~   62 (272)
                      .+|.+|+|.|++||||||++..|+..+.. +|..+.+++.|..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r  146 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR  146 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence            35789999999999999999999999975 78889999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00014  Score=66.91  Aligned_cols=41  Identities=20%  Similarity=0.184  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|+=|+|.||||+|||++|+++|..+   |.+++.++...+..
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~  253 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQ  253 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCS
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhh
Confidence            456789999999999999999999999   67777777665543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.66  E-value=5.8e-05  Score=64.13  Aligned_cols=40  Identities=23%  Similarity=0.404  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+.-|+|.|+||+||||+|++++..+   +.+++.++...+..
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~   83 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE   83 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHH
Confidence            35569999999999999999999988   56777787665543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.64  E-value=6.3e-05  Score=66.84  Aligned_cols=44  Identities=23%  Similarity=0.508  Sum_probs=37.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..+|.+|.|.|++||||||+++.|+..+...+..+.+.+.|..+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            35789999999999999999999999998777777777766544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.64  E-value=5.5e-05  Score=61.78  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..++|.|++|+||||++++++..+...+.++.+++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~   92 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE   92 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence            68999999999999999999999977777777766443

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.63  E-value=7.2e-05  Score=65.77  Aligned_cols=43  Identities=26%  Similarity=0.409  Sum_probs=36.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|.|++||||||+++.|+..+...+..+.+.+.|..+
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR  142 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence            3678999999999999999999999987766677777777544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.62  E-value=6.6e-05  Score=63.61  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..+..|+|.|+||+||||+|+++++.+   +.+++.++...+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~   76 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFV   76 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHH
Confidence            345678999999999999999999998   6677777766553

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.60  E-value=8.1e-05  Score=63.18  Aligned_cols=41  Identities=24%  Similarity=0.457  Sum_probs=37.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +++..+++++|.+|+||||++..|+..+. .|.++..+|.|.
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~   51 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT   51 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            45678999999999999999999999998 888999999885

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.59  E-value=9.7e-05  Score=64.88  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=35.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|.|++||||||+++.|+..+...+..+.+...|..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            4688999999999999999999999987766677666666443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.58  E-value=7.8e-05  Score=61.71  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+++.++..+...+.++.+++.+.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            36789999999999999999999977765566788877653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.57  E-value=6.5e-05  Score=59.72  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ..+..++|+|++|+||||+++++++.+..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            44567899999999999999999999854

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00026  Score=65.24  Aligned_cols=41  Identities=17%  Similarity=0.249  Sum_probs=34.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|+=|+|.||||+|||++|+++|..+   |.+++.++...+..
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~s  253 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVD  253 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcc
Confidence            456779999999999999999999999   67777777655543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.56  E-value=0.00011  Score=67.65  Aligned_cols=44  Identities=27%  Similarity=0.395  Sum_probs=40.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i~~   63 (272)
                      .+|.+|+++|.+|+||||++..|+..+... |.++..+|.|..+.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~  142 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP  142 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            457899999999999999999999999988 99999999997654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00033  Score=64.39  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|+=|+|.||||+|||++|+++|..+   |.+++.++...+.
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~  243 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV  243 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence            456679999999999999999999999   6777777765543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00025  Score=64.54  Aligned_cols=41  Identities=17%  Similarity=0.225  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|+=|+|.||||+|||++|+++|..+   |.+++.++...+..
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~s  220 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQ  220 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSC
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhc
Confidence            455669999999999999999999998   67777777665543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.53  E-value=9.7e-05  Score=60.03  Aligned_cols=36  Identities=14%  Similarity=0.024  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      ++.+++++|+|||||||++..++.++..+|.++.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            467999999999999999988888776667666543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.53  E-value=0.00011  Score=61.46  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|+|||||||++..++..+...|.++.+++.+.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            36789999999999999999999887766677888888764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.52  E-value=0.00013  Score=68.20  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=36.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|.|++||||||+++.|+..+...+..+.+.+.|.++
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR  333 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence            4689999999999999999999999987766677766777554

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.00028  Score=64.70  Aligned_cols=41  Identities=17%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|+=|+|.|+||+|||++|+++|..+   |.+++.++...+..
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s  254 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ  254 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh
Confidence            456779999999999999999999999   67777777665543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.51  E-value=0.00014  Score=65.37  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=35.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|.+|.|.|++||||||+++.|+..+...+..+.+...|..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            4688999999999999999999999987766677766666543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.51  E-value=5.9e-05  Score=69.55  Aligned_cols=44  Identities=23%  Similarity=0.511  Sum_probs=39.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.+|+|+|++|+||||++..|+..+...|.++.+++.|..+.
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~  140 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP  140 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence            34678999999999999999999999988888999999997654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.49  E-value=0.00069  Score=60.35  Aligned_cols=41  Identities=10%  Similarity=0.084  Sum_probs=35.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +++.+++|.|.||+||||++..++..+...|.++.+++.+.
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm   84 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM   84 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            57789999999999999999999998877788888888653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.49  E-value=0.00011  Score=68.85  Aligned_cols=44  Identities=25%  Similarity=0.462  Sum_probs=37.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++.+|+|+|.+||||||++..|+..+...|.++..++.|..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~  142 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA  142 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence            45789999999999999999999999988888999999987654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.49  E-value=0.00014  Score=60.97  Aligned_cols=37  Identities=16%  Similarity=0.029  Sum_probs=33.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .++.+++++|+||+||||.+..++.++..+|..+.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            5688999999999999999999999998888888877

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.48  E-value=0.00016  Score=60.74  Aligned_cols=38  Identities=21%  Similarity=0.241  Sum_probs=34.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..|++.|.+|+||||++-.++..+...|+.+.++|.|.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            46999999999999999999999998999998888774

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.48  E-value=0.00019  Score=58.46  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ   49 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~   49 (272)
                      .++..++|.|++|+||||+++.+++.+...
T Consensus        36 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~   65 (226)
T 2chg_A           36 KNIPHLLFSGPPGTGKTATAIALARDLFGE   65 (226)
T ss_dssp             TCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            333349999999999999999999988543

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.00036  Score=64.55  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=34.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|+=|+|.|+||+|||++|+++|..+   |.+++.++...+..
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s  281 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ  281 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc
Confidence            567789999999999999999999999   66777777665543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.46  E-value=8.6e-05  Score=63.90  Aligned_cols=39  Identities=21%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++..++|.|+||+||||+|+++++.+   +.++..++...+
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~   87 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSEL   87 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGG
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHH
Confidence            456679999999999999999999988   556666665444

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.46  E-value=0.00014  Score=58.59  Aligned_cols=36  Identities=31%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ..+++|+|++||||||+.+.|...+...|..+..+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~   41 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   41 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence            458999999999999999999999877776665444

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.45  E-value=0.00015  Score=62.19  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ..++..++|.|+||+||||+|+++++.+   +.+++.++.
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~   97 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS   97 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence            4567789999999999999999999987   667666643

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.45  E-value=0.00011  Score=60.37  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+++.++.   ..|.++.+++.+.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~   55 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG   55 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence            4678999999999999999999998   2366788888764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.44  E-value=9.8e-05  Score=63.97  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++..++|.|+||+||||+|+++++.+   +.++..++...+
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l   90 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASL   90 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHH
Confidence            356789999999999999999999987   556666665444

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.43  E-value=0.00017  Score=64.67  Aligned_cols=41  Identities=17%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++.++.|.|+|||||||++..++..+...|..+.|+|.+..
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            67899999999999999999999988777778889998653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.43  E-value=0.0002  Score=62.56  Aligned_cols=42  Identities=24%  Similarity=0.407  Sum_probs=37.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +|.+|.++|.+|+||||++..|+..+...|..+.++|.|..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            678999999999999999999999998888889889888543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.43  E-value=0.00015  Score=64.90  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ..+..+|.|+|.||+||||++..|+..+...|.++..++.|
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            34667899999999999999999999998788888888877

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.42  E-value=0.00016  Score=63.36  Aligned_cols=42  Identities=19%  Similarity=0.368  Sum_probs=38.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +.+|.++|.+|+||||++..|+..+...|..+.++|.|..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~  139 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP  139 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence            789999999999999999999999988888999999986553

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.42  E-value=0.00011  Score=64.29  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++..|+|.|+||+||||+|++++..+   +.+++.++...
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~   84 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE   84 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH
Confidence            456789999999999999999999987   55666665433

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.41  E-value=0.00024  Score=58.18  Aligned_cols=37  Identities=8%  Similarity=-0.076  Sum_probs=33.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .++.+++++|+|||||||.+-.++.++..+|.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            5678999999999999999999999998888888766

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.41  E-value=0.0006  Score=60.00  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=34.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++.+++|+|.||+||||++..++......|.++.+++.+
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            4678999999999999999999998876666678888765

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.40  E-value=0.00013  Score=64.14  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=34.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+..++|.|+||+||||++++++..+...+.++.+++...+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~   76 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   76 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence            45679999999999999999999998766778888875443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.39  E-value=0.00014  Score=63.08  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++..++|.|+||+||||+|+++++.+   +.++..++...+.
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~~   87 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT   87 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGGS
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhcc
Confidence            346678999999999999999999998   5677777765443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.39  E-value=0.00021  Score=62.04  Aligned_cols=40  Identities=15%  Similarity=0.037  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D   59 (272)
                      .++.+++|.|+|||||||+++.++..+... |.++.+++.+
T Consensus        33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e   73 (296)
T 1cr0_A           33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (296)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence            478899999999999999999999988654 6677777654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.38  E-value=0.00014  Score=63.18  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ...++|.|+||+||||+|+++++.+...+.++.+++...+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            3579999999999999999999998654456777765443

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.38  E-value=0.00043  Score=60.69  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +..|.++++.|+||+||||+++++++.+   +.++..++.
T Consensus        45 ~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~   81 (324)
T 3u61_B           45 GKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNG   81 (324)
T ss_dssp             TCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence            4556788999999999999999999998   445555553

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.37  E-value=0.00017  Score=63.96  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .++..++|.|+||+||||+++.++..+   +.++....+
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg   84 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSG   84 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEec
Confidence            345679999999999999999999998   445444443

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.37  E-value=0.0015  Score=60.16  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D   59 (272)
                      +++.+++|.|.||+||||++..++..... .|.++.+++.+
T Consensus       198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            46789999999999999999999988765 47788888865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.37  E-value=0.00023  Score=65.44  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=38.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +|.+|.++|++||||||++..|+..+...|..+..++.|..+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~  139 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP  139 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence            6789999999999999999999999988888999999987653

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.37  E-value=0.00017  Score=63.60  Aligned_cols=39  Identities=15%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.-|+|.|+||+|||++|+++++.+   +.+++.++...+
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l   87 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL   87 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH
Confidence            356789999999999999999999998   556666655433

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.36  E-value=0.00013  Score=62.96  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=28.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++|.|+|||||||++++|+..+   +.+.+.+++..+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l   80 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPEL   80 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHH
Confidence            9999999999999999999987   445666766544

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.35  E-value=0.00019  Score=64.20  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCEEEec
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ--------GIPAYALD   57 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~--------g~~~~~ld   57 (272)
                      .+..+..++|.|++|+||||+++++++.+...        +..+.+++
T Consensus        41 ~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           41 KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            45567799999999999999999999988554        56666666

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.34  E-value=8.4e-05  Score=57.73  Aligned_cols=39  Identities=10%  Similarity=0.100  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ..+..|+|.|+||+|||++|+++++.....+.+++ ++..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~   60 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL   60 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence            34456899999999999999999987644455555 5543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.33  E-value=0.00015  Score=63.97  Aligned_cols=43  Identities=12%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEecCccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ-G-IPAYALDGDNL   61 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g-~~~~~ld~D~i   61 (272)
                      ..+|.+|.|.|++||||||+++.|+..+... | ..+.++..|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            3678999999999999999999999988642 2 24555555543

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.33  E-value=0.00033  Score=61.88  Aligned_cols=38  Identities=24%  Similarity=0.392  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+++++|..|+||||+|..|+..+...|.++..+|.|-
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            68899999999999999999999999999999999996

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.32  E-value=0.00012  Score=60.36  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+..|+|+|++||||||+|.+|+++.
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            56789999999999999999999885

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.31  E-value=0.0002  Score=58.94  Aligned_cols=42  Identities=19%  Similarity=0.108  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-----HcC-CCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-----AQG-IPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-----~~g-~~~~~ld~D~i   61 (272)
                      ..+++++++|+||||||++|..+.....     ..| .++++..-|.+
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL   50 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL   50 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence            4567999999999999999988755442     345 56666655544

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.30  E-value=0.00017  Score=64.59  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ++..|+|.|+||+||||+|++|++.+   +.+++.++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~   84 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA   84 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence            45679999999999999999999998   566666654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.30  E-value=0.00015  Score=66.86  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ++..|+|.|+||+||||+|++|++.+   +.++..++...+.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~~~~~   87 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT   87 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGGC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecchhhc
Confidence            45679999999999999999999998   6677777654443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.29  E-value=0.0004  Score=62.11  Aligned_cols=40  Identities=23%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++.+|.|+|+|||||||+.++|...+...+..+.++..|
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence            3478999999999999999999999886666666666554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.29  E-value=0.0001  Score=66.01  Aligned_cols=27  Identities=22%  Similarity=0.561  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ....|+|.|+|||||||+++.|++.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            345699999999999999999999983

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.29  E-value=0.00013  Score=60.01  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            578899999999999999999999876

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.29  E-value=0.00022  Score=63.44  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=33.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEecC
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ---GIPAYALDG   58 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~---g~~~~~ld~   58 (272)
                      +..+..++|.|++|+||||+++.+++.+...   +..+.+++.
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            4567789999999999999999999988654   566777763

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.28  E-value=0.0003  Score=61.81  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=34.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i   61 (272)
                      +..++|.|++|+|||++|++++..+. ..|.++.++....+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l  192 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF  192 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence            56899999999999999999999998 78888877765443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.28  E-value=0.00029  Score=63.04  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||++..++......|.++.|++.+.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            6789999999999999999999988776777899999764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.27  E-value=0.00032  Score=62.95  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|.||+||||+|..++..+...|.++.|+|.+.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6789999999999999999999988877788899999854

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.26  E-value=0.00019  Score=63.92  Aligned_cols=41  Identities=24%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEecCc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ------GIPAYALDGD   59 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld~D   59 (272)
                      +..+..++|.|++|+||||+++.+++.+...      +..+.+++..
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            4567789999999999999999999988543      4556666643

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00018  Score=63.55  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=30.3

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      +..+.+.+|..++|.|+||+|||++++.+++.|..
T Consensus        37 ~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           37 YDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             HHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44555678889999999999999999999999964

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.24  E-value=0.00021  Score=64.21  Aligned_cols=37  Identities=30%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+..|+|.|+||+||||+|+++++.+   +.+++.++...
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~  107 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS  107 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence            45578999999999999999999998   66777666543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.24  E-value=0.00024  Score=62.82  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.-|+|.|+||+|||++|+++++.+.  +.++..++...+
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l   82 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL   82 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSS
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHH
Confidence            3457899999999999999999999873  445666665544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.24  E-value=0.0022  Score=59.25  Aligned_cols=40  Identities=13%  Similarity=0.174  Sum_probs=34.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D   59 (272)
                      .++.+++|.|.||+||||++..++..+.. .|.++.+++.+
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            46789999999999999999999998765 47788888765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.24  E-value=0.00015  Score=60.41  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            467899999999999999999999876

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.23  E-value=0.0022  Score=59.14  Aligned_cols=40  Identities=10%  Similarity=0.082  Sum_probs=35.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +++.+++|.|.||+||||++..++......|.++.+++.+
T Consensus       195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            4678999999999999999999999887678888888865

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.23  E-value=0.0002  Score=57.79  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.+.|.|++||||||+.+.|+..+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999988

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.22  E-value=0.00022  Score=63.90  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++..|+|.|+||+||||+|+++++.+   +.+++.++...+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l  153 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSL  153 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHh
Confidence            456789999999999999999999987   666777765544

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.21  E-value=0.0003  Score=62.88  Aligned_cols=40  Identities=15%  Similarity=0.123  Sum_probs=32.2

Q ss_pred             CCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecC
Q psy17388         19 GQSNI--CLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDG   58 (272)
Q Consensus        19 ~~~~~--lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~   58 (272)
                      +..+.  .++|+|++|+||||+++.+++.+... +..+.+++.
T Consensus        39 ~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~   81 (389)
T 1fnn_A           39 NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING   81 (389)
T ss_dssp             STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred             CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence            34555  89999999999999999999998655 456777763

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.21  E-value=0.00042  Score=59.49  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i   61 (272)
                      .++.++.|+|++||||||+.+.|...+... . ..+.++.+.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~-G~I~~~g~~i   64 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKS-YHIITIEDPI   64 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCC-CEEEEEESSC
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhCCCCCC-CEEEEcCCcc
Confidence            577899999999999999999999988643 2 2334444443

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.20  E-value=0.00011  Score=62.70  Aligned_cols=38  Identities=21%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +.-++|.|+||+||||+|+++++.+   +.+++.++...+.
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~   81 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFI   81 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHH
Confidence            4458899999999999999999998   5556555554443

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.20  E-value=0.00016  Score=58.57  Aligned_cols=33  Identities=12%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +|+++|.+||||||+|..|+..    |.++.|+++..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~   33 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQ   33 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence            3789999999999999999865    45788888753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.20  E-value=0.00029  Score=58.20  Aligned_cols=41  Identities=17%  Similarity=0.188  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+++.|+..+..      .+....+++.+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            36789999999999999999999975421      122366777654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.18  E-value=0.00029  Score=63.07  Aligned_cols=39  Identities=15%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.-|+|.|+||+||||+|+++++.+   +.+++.++...+
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l  120 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL  120 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence            345568999999999999999999998   556666654433

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.18  E-value=0.00063  Score=56.58  Aligned_cols=37  Identities=14%  Similarity=-0.052  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .++.+.+++|+|||||||.+-.++.+...+|.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~   62 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF   62 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            5688999999999999999999999998888888766

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=97.17  E-value=0.00056  Score=59.81  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=38.1

Q ss_pred             CCCCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         19 GQSNICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        19 ~~~~~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..++++|+|+|. +|+||||+|..|+..+...|.++..+|.|.-..
T Consensus       101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~  146 (299)
T 3cio_A          101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG  146 (299)
T ss_dssp             SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTC
T ss_pred             CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence            345678888876 899999999999999998999999999986433

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.17  E-value=0.00027  Score=55.96  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|+.||||||+.+.|+..++
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            6788999999999999999999999873

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.16  E-value=0.00037  Score=64.52  Aligned_cols=40  Identities=25%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +|.-++|.|+||+|||++|+++++.++. ..+++.++.-.+
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~  101 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEV  101 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGG
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHH
Confidence            4577999999999999999999999821 156666665443

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.15  E-value=0.0026  Score=55.54  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             HHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388         87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP  165 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~  165 (272)
                      +...+++|..||.+. ...     .++.+....-.+ +.||+..| .+++.+ +.+|.....-.............+  .
T Consensus       187 V~~~~~~G~~vildi-d~~-----g~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~~~i~~rl~~a~~~e~~~--~  256 (295)
T 1kjw_A          187 VREVAEQGKHCILDV-SAN-----AVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRATKLEQEF--T  256 (295)
T ss_dssp             HHHHHHTTCEEEECC-CTT-----HHHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHH--G
T ss_pred             HHHHHhcCCeEEEEe-CHH-----HHHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhc--c
Confidence            455677899999874 221     111111111224 67899876 677666 654431110000000000000011  1


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ...+.+|+++  +++++++++.+.|...
T Consensus       257 ~~fd~vivNd--~le~a~~~l~~ii~~~  282 (295)
T 1kjw_A          257 ECFSAIVEGD--SFEEIYHKVKRVIEDL  282 (295)
T ss_dssp             GGCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred             ccCeEEEECc--CHHHHHHHHHHHHHhc
Confidence            2346777764  7999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.14  E-value=0.00032  Score=61.83  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++..|+|+|+||+||||+|+++++.+   +.++..++..
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~   89 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAP   89 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecch
Confidence            445578999999999999999999987   5566666543

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=97.14  E-value=0.00068  Score=58.42  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++++|.|+|. +|+||||+|..|+..+...|.++.++|.|.-+.
T Consensus        80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~  124 (271)
T 3bfv_A           80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP  124 (271)
T ss_dssp             CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence            45678888865 899999999999999999999999999995443

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.13  E-value=0.00036  Score=63.10  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++..|+|.|+||+|||++|++++..+   +.+++.++...+.
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~  185 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLT  185 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhh
Confidence            346789999999999999999999987   6677777765543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.12  E-value=0.00062  Score=60.59  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..++.+|.|+|.+|+||||+.+.|+..+...|..+..++.|.
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            467889999999999999999999998877777777777664

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.12  E-value=0.00035  Score=59.12  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      -++|.|+||+||||++++++..+   +.+.+.++...
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~   84 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD   84 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHH
Confidence            38999999999999999999887   44566665443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.11  E-value=0.00051  Score=63.99  Aligned_cols=39  Identities=21%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .|.-|+|.|+||+||||+|++++..+   +.+++.++...+.
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~   86 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV   86 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH
Confidence            45568999999999999999999988   6677777655443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.10  E-value=0.00032  Score=56.37  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPA   53 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~   53 (272)
                      .+|.|+|++||||||+++.|...+...|+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~   33 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRV   33 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCce
Confidence            4789999999999999999999997665443

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.10  E-value=0.00054  Score=60.95  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=37.7

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ......+++++|..|+||||+|..|+..+...|.++..+|.|
T Consensus        12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D   53 (334)
T 3iqw_A           12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD   53 (334)
T ss_dssp             HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            334467899999999999999999999999889999999998

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.09  E-value=0.00046  Score=64.94  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+..++|+|+||+||||+|+++++.+   |+++..++...
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~  112 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD  112 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence            44689999999999999999999998   66777776543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.08  E-value=0.00039  Score=58.01  Aligned_cols=41  Identities=17%  Similarity=0.079  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+++.++.....      .+.++.+++.+.
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            36789999999999999999999985211      134677887654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.08  E-value=0.0004  Score=57.10  Aligned_cols=28  Identities=36%  Similarity=0.445  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ..+..++|.|++|+||||+++.+++.+.
T Consensus        43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           43 RIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3456899999999999999999999885

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.08  E-value=0.0037  Score=58.42  Aligned_cols=41  Identities=10%  Similarity=-0.074  Sum_probs=35.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~   60 (272)
                      .++.+++|.|.||+||||++..++...... |.++.+++.+.
T Consensus       240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~  281 (503)
T 1q57_A          240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE  281 (503)
T ss_dssp             CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred             CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence            467899999999999999999999988655 77898888753

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.08  E-value=0.00085  Score=59.95  Aligned_cols=41  Identities=27%  Similarity=0.488  Sum_probs=37.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ....+++++|..|+||||+|..|+..+...|.++..+|.|-
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   64 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP   64 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            34567888899999999999999999999999999999986

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.07  E-value=0.0003  Score=59.93  Aligned_cols=42  Identities=21%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..+..|+|.|+||+|||++|+++++.+...+.++++++...+
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            344568999999999999999999987544556777765433

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.06  E-value=0.00065  Score=61.21  Aligned_cols=40  Identities=18%  Similarity=0.196  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+||+||||+|..++......|.++.|+|.+.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            6789999999999999999999988776778899999875

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.06  E-value=0.00041  Score=60.58  Aligned_cols=37  Identities=30%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ..+..++|+|++|+||||+|+++++.+   +.++.+++..
T Consensus        36 ~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~   72 (324)
T 1hqc_A           36 EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP   72 (324)
T ss_dssp             SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTT
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecc
Confidence            345678999999999999999999988   5566666544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.02  E-value=0.0008  Score=66.44  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|+-|+|.|+||+|||++|++++..+   |.+++.++...+
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l  274 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI  274 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHh
Confidence            467889999999999999999999988   667777765444

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.02  E-value=0.00079  Score=59.91  Aligned_cols=41  Identities=27%  Similarity=0.291  Sum_probs=33.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      -.++.++.|.|+|||||||+.+.|...+...+..+.+...|
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d   92 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   92 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence            36788999999999999999999998886655566655544

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.01  E-value=0.00065  Score=60.06  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ++.+++|.|+||+||||+|.+++...   |.++.|++.
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEAL---GGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHH---HTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEe
Confidence            45678999999999999999999872   446666665

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.00  E-value=0.00081  Score=57.85  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.++.|.|++||||||++..++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            678999999999999999999998664

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.00  E-value=0.00054  Score=55.11  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+.-|+|+|.||+||||+|.+|.++    |  ..++..|.+
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r----G--~~lvaDD~v   49 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR----G--HQLVCDDVI   49 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT----T--CEEEESSEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc----C--CeEecCCEE
Confidence            4567999999999999999999985    4  344555543

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=96.98  E-value=0.00093  Score=59.18  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ...+++++|..|+||||+|..|+..+...|.++..+|.|.
T Consensus        18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~   57 (329)
T 2woo_A           18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP   57 (329)
T ss_dssp             TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            3568889999999999999999999999999999999985

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=96.97  E-value=0.001  Score=57.80  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=36.4

Q ss_pred             CCCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPG-LSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G-~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++++|+|+| .+|+||||+|..|+..+...|.++..+|.|.-+.
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~  134 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKG  134 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTC
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCC
Confidence            4556666664 6899999999999999998899999999996443

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.97  E-value=0.00041  Score=58.02  Aligned_cols=36  Identities=31%  Similarity=0.472  Sum_probs=33.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      |.++|..|+||||++..|+..|...|.++..+|.|.
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   38 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            566999999999999999999998899999999986

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.97  E-value=0.00057  Score=58.74  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=26.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      -++|.|+|||||||++++++..+   +.+.+.++..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~  107 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGS  107 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred             eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHH
Confidence            38999999999999999999987   3455556543

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=96.96  E-value=0.0013  Score=56.06  Aligned_cols=41  Identities=24%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..+.+..+-.|+||||+|..|+..|...|.++.++|.|.-.
T Consensus        19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            34445567889999999999999999899999999998654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.95  E-value=0.00072  Score=62.36  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=32.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCcc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~   60 (272)
                      +..++|.|+||+||||++++++..+...  +.++.+++...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~  170 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK  170 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence            5679999999999999999999988654  56677776544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.95  E-value=0.00055  Score=60.13  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+++.|...+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            578899999999999999999999987

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.94  E-value=0.00063  Score=55.94  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+...|+|+|.+||||||+...|...+... ..+..++.|
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d   66 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGD   66 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECS
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecC
Confidence            355789999999999999999999887432 345556554

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.93  E-value=0.001  Score=55.54  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D   59 (272)
                      .++.+++|.|.||+||||+|..++.. ....|.++.+++.+
T Consensus        28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            36789999999999999999988754 33346678887765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.93  E-value=0.00058  Score=61.78  Aligned_cols=28  Identities=21%  Similarity=0.247  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      -.++.+|.|.|+|||||||+++.|+..+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3567899999999999999999999877

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.91  E-value=0.00046  Score=58.22  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            578899999999999999999998765

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=96.91  E-value=0.0011  Score=59.43  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~   60 (272)
                      ....+++++|..|+||||+|..|+..|.  ..|.++..+|.|.
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~   58 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP   58 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            3456888899999999999999999999  8899999999996

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=96.90  E-value=0.0011  Score=59.16  Aligned_cols=42  Identities=21%  Similarity=0.233  Sum_probs=37.6

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGD   59 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D   59 (272)
                      ......+++++|..|+||||+|..|+..+.  ..|.++..+|.|
T Consensus        14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D   57 (348)
T 3io3_A           14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD   57 (348)
T ss_dssp             TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred             cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            334458999999999999999999999998  789999999998

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.89  E-value=0.00058  Score=63.15  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=29.9

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +..+...+...++|.|+||+||||+|+.+++.+   +.++..++
T Consensus        42 ~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~   82 (447)
T 3pvs_A           42 PRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADVERIS   82 (447)
T ss_dssp             HHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred             HHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEE
Confidence            333433444579999999999999999999988   44444443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.88  E-value=0.00069  Score=60.27  Aligned_cols=27  Identities=30%  Similarity=0.475  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++..++|.|+||+||||+|+++++.+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            347899999999999999999999983

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.88  E-value=0.0012  Score=63.10  Aligned_cols=41  Identities=34%  Similarity=0.395  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..+++++++|..|+||||+|-.|+..+...|.++.++|.|-
T Consensus         6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            45578999999999999999999999999999999999994

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.88  E-value=0.0011  Score=57.27  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++|.++|-.|+||||+|..|+..|...|.++..+|.|.-
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q   41 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            467778999999999999999999989999999998853

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.87  E-value=0.00097  Score=63.17  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ++.+++|.|+||+||||+|++++..+   +.+...++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~  141 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISL  141 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEe
Confidence            57799999999999999999999998   444444543

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.86  E-value=0.0011  Score=56.47  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++|.++|-.|+||||++..|+..|...|.++..+|.|.-
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q   40 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence            467778999999999999999999988999999998843

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.85  E-value=0.00071  Score=62.46  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.-|+|.|+||+|||++|++++..+.  +.+++.++...+
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l  204 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL  204 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHH
Confidence            3457899999999999999999999872  345666665544

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.84  E-value=0.00057  Score=56.55  Aligned_cols=24  Identities=25%  Similarity=0.603  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ..|+|.|+||+||||+|.+|++.+
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            569999999999999999999998

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.83  E-value=0.0008  Score=59.38  Aligned_cols=40  Identities=23%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ------GIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||++..++......      +.++.|++.+.
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            67899999999999999999999864322      45788888775

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.81  E-value=0.0011  Score=59.12  Aligned_cols=41  Identities=22%  Similarity=0.088  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~   60 (272)
                      .++.++.|.|+|||||||++..++.....      .+.++.|++.+.
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            46789999999999999999999986321      255788888765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.81  E-value=0.00057  Score=57.20  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998655

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.79  E-value=0.00071  Score=55.14  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQG   50 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g   50 (272)
                      .++.|.|++||||||+.+.|+..+...|
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence            4689999999999999999999886555

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.79  E-value=0.00065  Score=57.35  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            477899999999999999999998765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.78  E-value=0.00085  Score=59.14  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++|.|+||+||||+++++++.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.78  E-value=0.0014  Score=59.03  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ   49 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~   49 (272)
                      .++.+|+|+|++||||||+.+.|...+...
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~  163 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYINQT  163 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence            567899999999999999999999988654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.76  E-value=0.00077  Score=57.06  Aligned_cols=27  Identities=37%  Similarity=0.586  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            578899999999999999999998765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.74  E-value=0.001  Score=61.73  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ..+..++|.|+||+||||+|+.|++.+..
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            44557899999999999999999999853

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.74  E-value=0.0013  Score=61.63  Aligned_cols=37  Identities=22%  Similarity=0.384  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      |.-|+|.|+||+||||++++++..+   +.++++++...+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~  100 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDF  100 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHH
Confidence            4449999999999999999999887   556777775443

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.74  E-value=0.002  Score=54.11  Aligned_cols=39  Identities=8%  Similarity=-0.003  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .+.+.+.+++|+|||||||-+-.++.+...+|.++.++-
T Consensus        16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k   54 (234)
T 2orv_A           16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   54 (234)
T ss_dssp             --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            356899999999999999999999988888888877653

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.73  E-value=0.0011  Score=62.00  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.-|+|.|+||+|||++|++++..+   +.+++.++...+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l  274 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI  274 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence            456679999999999999999999987   556766665444

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.73  E-value=0.00085  Score=59.37  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +. ++|.|++|+||||+++.++..+
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence            44 9999999999999999999976

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.72  E-value=0.0012  Score=58.94  Aligned_cols=41  Identities=17%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH---c---CCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA---Q---GIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~---~---g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+++.++.....   .   |..+.++|+..
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            37889999999999999999999987521   1   23567888754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.72  E-value=0.001  Score=54.86  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=27.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .+...|+|.|.+||||||+...|...+... ..+..++
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~   72 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA   72 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            456788999999999999999999886322 2344444

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=96.72  E-value=0.0013  Score=55.84  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=34.5

Q ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFP-GLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~-G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++++|.++ +-.|+||||++..|+..|...|.++.++|.|.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   45 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP   45 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence            44566665 77899999999999999998999999999885

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.71  E-value=0.0008  Score=57.71  Aligned_cols=27  Identities=22%  Similarity=0.225  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999998765

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.71  E-value=0.00075  Score=58.03  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.|+-.+... .+.+.+++..+
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~   75 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLGQNL   75 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSSCCS-SCEEEETTEET
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEEC
Confidence            467899999999999999999999765321 13445555443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.70  E-value=0.00075  Score=58.36  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999998765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.69  E-value=0.00097  Score=58.99  Aligned_cols=23  Identities=39%  Similarity=0.548  Sum_probs=21.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++|.|++|+||||+++++++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999985

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.69  E-value=0.00082  Score=57.14  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.68  E-value=0.00099  Score=56.67  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++.++.|.|++||||||+.+.|+-.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999874

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=96.68  E-value=0.0023  Score=53.19  Aligned_cols=38  Identities=29%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             eEEE-EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLL-FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~-l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|. ..+..|+||||++..|+..|..+|.++.++|.|.
T Consensus         3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (237)
T 1g3q_A            3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence            3454 4577899999999999999998999999999985

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.68  E-value=0.002  Score=57.75  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ   49 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~   49 (272)
                      .++.+|+|+|++||||||+.+.|...+...
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            455699999999999999999999988654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.67  E-value=0.0018  Score=52.41  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             EEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +|.+ .+-.|+||||++..|+..|..+|.++.++|.|.
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~   40 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP   40 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            4545 477889999999999999999999999999984

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.67  E-value=0.0017  Score=57.20  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=32.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~   60 (272)
                      ++ ++.|.|+||+||||++-.++......  |..+.|+|+..
T Consensus        28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            45 89999999999999999988877554  66788999764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.66  E-value=0.00091  Score=57.43  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            477899999999999999999998765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.66  E-value=0.00092  Score=57.63  Aligned_cols=27  Identities=15%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.65  E-value=0.00093  Score=57.22  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+|.++.|.|++||||||+.+.|+-.+...  ..+.+++.
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--G~I~i~g~   81 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFYDAE--GDIKIGGK   81 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCE--EEEEETTE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCCCC--eEEEECCE
Confidence            477899999999999999999998765311  23455543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.65  E-value=0.0009  Score=56.17  Aligned_cols=27  Identities=37%  Similarity=0.448  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999998765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.65  E-value=0.0011  Score=56.94  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++.++.|.|++||||||+.+.|+-.
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47789999999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.64  E-value=0.00092  Score=56.51  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998765

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.63  E-value=0.0026  Score=57.19  Aligned_cols=40  Identities=13%  Similarity=0.247  Sum_probs=35.1

Q ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFP-GLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~-G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++++|.+. |-.|+||||+|-.|+..|...|.++.++|.|
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            456677665 6999999999999999998889999999999

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.63  E-value=0.00099  Score=58.57  Aligned_cols=32  Identities=16%  Similarity=0.205  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ..++|.|+||+|||++|+++++.+   +.++..+.
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~   78 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQ   78 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEe
Confidence            468999999999999999999988   44555444

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.62  E-value=0.001  Score=56.94  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            478899999999999999999998765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.62  E-value=0.00097  Score=56.98  Aligned_cols=27  Identities=26%  Similarity=0.421  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998765

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.0012  Score=57.46  Aligned_cols=27  Identities=37%  Similarity=0.539  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +...++|.|++|+||||+|+++++.+.
T Consensus        45 ~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           45 SMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            333499999999999999999999974

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.61  E-value=0.002  Score=58.98  Aligned_cols=41  Identities=17%  Similarity=0.184  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.+|+|+|++||||||+.++|...+.....++. +..|.+
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~-~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL-TVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE-EEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE-Eecccc
Confidence            56789999999999999999999998854333444 334443

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.60  E-value=0.00099  Score=58.31  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ..+..|+|+|.||+|||++|+++.+.....+.+++.++...+
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            445568999999999999999999976444556666765443

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.60  E-value=0.00082  Score=55.91  Aligned_cols=27  Identities=33%  Similarity=0.541  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            367789999999999999999998765

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.59  E-value=0.00073  Score=55.94  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++.++.|.|++||||||+.+.|+-.
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35779999999999999999999977

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=96.59  E-value=0.0076  Score=52.46  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=52.6

Q ss_pred             HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccccccccccCCC
Q psy17388         86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA  164 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~  164 (272)
                      .....++.|..||.+. .+  .....++    ......+.||+.. +.+++.+|+.++....... .......+...|. 
T Consensus       181 ~V~~~~~~gk~viLdi-d~--qg~~~lk----~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~-~~~r~~k~e~e~~-  251 (292)
T 3tvt_A          181 SVREVAEKGKHCILDV-SG--NAIKRLQ----VAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKK-TYERAIKMEQEFG-  251 (292)
T ss_dssp             HHHHHHHHTCEEEECC-CT--HHHHHHH----HTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHH-HHHHHHHHHHHHT-
T ss_pred             HHHHHHHcCCcEEEec-cc--hhhhhcc----cccccceEEEEECCCHHHHHHHHhCCCchhHHH-HHHHHHHHHHhhh-
Confidence            3455677898999874 23  2222222    2233446788887 4788888875442111000 0000111111222 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        165 PKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       165 ~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       ...+.+|.++  ++++++++|.+.|.+.
T Consensus       252 -~~fD~vIvNd--dle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          252 -EYFTGVVQGD--TIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             -TTCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred             -hhCCEEEECc--CHHHHHHHHHHHHHHh
Confidence             2346777654  7999999999998865

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=96.59  E-value=0.0027  Score=53.50  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             eEEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|.+ .+-.|+||||+|..|+..|..+|.++..+|.|.
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI   41 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            44544 678899999999999999999999999999985

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=96.58  E-value=0.003  Score=53.44  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.+..+-.|+||||++-.|+..|...|.++.++|.|.
T Consensus         5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (263)
T 1hyq_A            5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   41 (263)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4455788899999999999999998899999999885

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.58  E-value=0.0011  Score=56.93  Aligned_cols=27  Identities=26%  Similarity=0.576  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            478899999999999999999998765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=96.58  E-value=0.0032  Score=61.68  Aligned_cols=95  Identities=16%  Similarity=0.105  Sum_probs=49.0

Q ss_pred             HHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388         87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP  165 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~  165 (272)
                      ++..++.|..||.+. ..  .   .++.+....-.+ ++||+..| .+++.+ +.+|.....-...+.....+.  .+.+
T Consensus       613 v~~~~~~g~~~ildi-~~--~---~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t~~~~~~rl~~a~~~e--~~~~  682 (721)
T 2xkx_A          613 VREVAEQGKHCILDV-SA--N---AVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRATKLE--QEFT  682 (721)
T ss_pred             HHHHHHCCCcEEEeC-CH--H---HHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCCHHHHHHHHHHHHHHH--Hhcc
Confidence            455677899998874 22  1   222222111224 67899866 566655 644421110000000000001  1112


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ...+++|+++  +++++++++.+.|.+.
T Consensus       683 ~~fd~vi~Nd--~l~~a~~~l~~~i~~~  708 (721)
T 2xkx_A          683 ECFSAIVEGD--SFEEIYHKVKRVIEDL  708 (721)
T ss_pred             ccCcEEEECc--CHHHHHHHHHHHHHhc
Confidence            2456778765  7999999999998764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.57  E-value=0.0015  Score=56.58  Aligned_cols=24  Identities=38%  Similarity=0.632  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++|+|++|+||||+++.+++.+.
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhc
Confidence            389999999999999999999874

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.57  E-value=0.0023  Score=62.90  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++|.|+||+|||++|+++++.+...+.+++.++...+..
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME  562 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence            6999999999999999999999866667788887655544

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.57  E-value=0.0015  Score=58.66  Aligned_cols=38  Identities=16%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             CCCeEEEE--EcCCCCCHHHHHHHHHHHHHHc------CCCEEEec
Q psy17388         20 QSNICLLF--PGLSGAGKTSISFQIESYLIAQ------GIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l--~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld   57 (272)
                      ..+..++|  +|++|+||||+++.+++.+...      +..+.+++
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            45678888  9999999999999999988643      44556665

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.56  E-value=0.0016  Score=59.36  Aligned_cols=40  Identities=10%  Similarity=0.041  Sum_probs=30.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||+++.++-....      .+.++.|++++.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            6789999999999999999987643311      134588888765

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=96.55  E-value=0.0029  Score=52.73  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=34.2

Q ss_pred             CCeEE-EEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccc
Q psy17388         21 SNICL-LFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI-~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i   61 (272)
                      ++++| +..+-.|+||||+|-.|+..|... |.++..+|.|.-
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            34555 445778999999999999999888 999999999854

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.55  E-value=0.0011  Score=56.33  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998765

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.53  E-value=0.0017  Score=55.22  Aligned_cols=40  Identities=15%  Similarity=0.212  Sum_probs=33.8

Q ss_pred             CCCeEEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++++|.+ .+-.|+||||+|..|+..|. +|.++..+|.|.
T Consensus        25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~   65 (267)
T 3k9g_A           25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT   65 (267)
T ss_dssp             -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence            45666655 68889999999999999998 899999999884

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.53  E-value=0.0044  Score=61.80  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..++|.|++|+|||++|++|++.+...+.+++.++...+..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~  629 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME  629 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence            48999999999999999999999866566788888766544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.52  E-value=0.0027  Score=59.75  Aligned_cols=40  Identities=20%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .++.++.|.|++||||||+++.++..+...|.++.++..+
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e  318 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE  318 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            4678999999999999999999998876666666666544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.51  E-value=0.0015  Score=58.67  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            467899999999999999999999765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.50  E-value=0.0012  Score=57.07  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999998765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.49  E-value=0.0016  Score=55.09  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+ .++.|.|++||||||+.+.|+-.+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            35 789999999999999999998765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.49  E-value=0.0019  Score=57.27  Aligned_cols=29  Identities=38%  Similarity=0.505  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +..+..++|+|++|+||||+++++++.+.
T Consensus        35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34456789999999999999999999984

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.48  E-value=0.0013  Score=56.10  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.47  E-value=0.0044  Score=60.83  Aligned_cols=38  Identities=32%  Similarity=0.512  Sum_probs=31.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..++|.|+||+|||++|++|++.+   +.+++.++...+..
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~  526 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYME  526 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcc
Confidence            479999999999999999999998   56677777655433

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.46  E-value=0.0018  Score=56.19  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++|.|++|+||||+++.+++.+.
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            399999999999999999999874

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.42  E-value=0.0018  Score=58.51  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            568899999999999999999999765

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=96.41  E-value=0.0024  Score=55.24  Aligned_cols=40  Identities=18%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             CeEEEEE---cCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         22 NICLLFP---GLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        22 ~~lI~l~---G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +++|.|.   +-.|+||||++..|+..|...|.++..+|.|.-
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q   76 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ   76 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3445555   589999999999999999989999999998854

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.41  E-value=0.00082  Score=51.90  Aligned_cols=26  Identities=8%  Similarity=0.071  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+..|+|.|+||+|||++|+++++..
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhC
Confidence            34458899999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.40  E-value=0.0019  Score=58.04  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            578899999999999999999998765

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.39  E-value=0.005  Score=51.19  Aligned_cols=37  Identities=14%  Similarity=-0.057  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .+|.+.+++|+|||||||.+-.++.++..+|.++..+
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~   62 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVF   62 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence            5689999999999999995555556666777777654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.38  E-value=0.002  Score=57.77  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            467899999999999999999999765

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.36  E-value=0.004  Score=51.17  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.+..+-.|+||||++..|+..|...| ++..+|.|.
T Consensus         3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~   38 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP   38 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence            445578899999999999999999889 999999884

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.36  E-value=0.0012  Score=58.01  Aligned_cols=41  Identities=24%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.|...+... .+.+.+++..+
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~G~~i  118 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDI  118 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSCCS-EEEEEETTEET
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCC-CcEEEECCEEc
Confidence            467899999999999999999998765311 12345665443

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.35  E-value=0.0038  Score=59.47  Aligned_cols=35  Identities=14%  Similarity=0.235  Sum_probs=30.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      ..+++|+|+||+||||+++.+...+...|.++.++
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            46899999999999999999999988777776655

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.34  E-value=0.0022  Score=57.66  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            467899999999999999999999765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.34  E-value=0.0018  Score=56.35  Aligned_cols=27  Identities=37%  Similarity=0.448  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999998765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.34  E-value=0.0021  Score=57.58  Aligned_cols=27  Identities=30%  Similarity=0.277  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999999765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.33  E-value=0.0016  Score=58.41  Aligned_cols=37  Identities=16%  Similarity=0.248  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .++.+++|+|++||||||+.+.|...+... .+.+.++
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie  209 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE  209 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence            367799999999999999999999876432 2344454

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.32  E-value=0.0023  Score=57.76  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            467899999999999999999999765

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=96.32  E-value=0.0054  Score=50.47  Aligned_cols=35  Identities=20%  Similarity=0.143  Sum_probs=29.8

Q ss_pred             EEEEEc-CCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         24 CLLFPG-LSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        24 lI~l~G-~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .|+++| -.|+||||++-.|+..|..+|.++.++|.
T Consensus         3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp   38 (224)
T 1byi_A            3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence            455555 58999999999999999999999988874

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.31  E-value=0.0049  Score=54.24  Aligned_cols=40  Identities=18%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..++|.|.|-=|+||||++--|+..|...|.++..+|.|-
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp   86 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP   86 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            4579999999999999999999999999999999999883

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.31  E-value=0.0026  Score=55.79  Aligned_cols=41  Identities=32%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH--H----------HcC----CCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL--I----------AQG----IPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L--~----------~~g----~~~~~ld~D~   60 (272)
                      .++.++.|.|+|||||||+|..++...  +          ..|    .++.|++.+.
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~  152 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG  152 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence            367899999999999999999999752  1          113    4678888764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.0017  Score=60.20  Aligned_cols=28  Identities=32%  Similarity=0.331  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+|.++.|.|++||||||+.+.|+..+.
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            4788999999999999999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.30  E-value=0.0021  Score=56.56  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      -.+++|+|+.||||||+.+.|....  .|.++.++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~   38 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIEN   38 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEe
Confidence            3589999999999999999998754  2444444443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.27  E-value=0.0029  Score=63.12  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-------QGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-------~g~~~~~ld~D~i   61 (272)
                      .++..++|+|+||+||||+++.+++.+..       .+.++++++...+
T Consensus       189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l  237 (854)
T 1qvr_A          189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL  237 (854)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence            44556899999999999999999999854       2556666665433

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.26  E-value=0.0041  Score=56.13  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ...++|.|++||||||+++.+...+...|..+.++|.+
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45689999999999999999998887778888888854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.24  E-value=0.0045  Score=58.22  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHH--HHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQI--ESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~L--a~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+++.+  +-.+. .+-..++++...
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~   78 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEE   78 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence            37889999999999999999994  44432 234567777654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.24  E-value=0.0022  Score=57.44  Aligned_cols=25  Identities=12%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +..+.|.|++||||||+++.|+..+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999999987

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.24  E-value=0.0026  Score=57.76  Aligned_cols=39  Identities=18%  Similarity=0.251  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+.+.|+-.+...  .-+++++..
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~--G~I~i~G~~   83 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLLNTE--GEIQIDGVS   83 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCSEEE--EEEEESSCB
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCCCC--eEEEECCEE
Confidence            468899999999999999999999755311  234565543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.23  E-value=0.0026  Score=57.40  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            467899999999999999999999765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.22  E-value=0.0019  Score=57.78  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            467899999999999999999998665

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.20  E-value=0.0076  Score=49.26  Aligned_cols=38  Identities=8%  Similarity=0.006  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      .++.+.+++|+|||||||-.-........+|.++.++.
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k   55 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   55 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence            46789999999999999544444444456677777764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.19  E-value=0.0023  Score=54.94  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +.++.|.|++||||||+.+.|+-.++..  ..+.+++
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~--G~I~~~g   64 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLLPYS--GNIFING   64 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCCCC--cEEEECC
Confidence            7899999999999999999998765212  2345555

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=96.18  E-value=0.0049  Score=53.12  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             eEEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|.+ .+-.|+||||++..|+..|...|.++..+|.|.
T Consensus         5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~   43 (286)
T 2xj4_A            5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            35555 578899999999999999999999999999986

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.16  E-value=0.0031  Score=50.18  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.+.+|+|+.||||||+.++|.-.|
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3388999999999999999999877

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.16  E-value=0.0034  Score=49.56  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++..|+|.|.+|+||||+.+.|...
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999999753

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=96.14  E-value=0.0042  Score=54.88  Aligned_cols=30  Identities=27%  Similarity=0.657  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.+..++|.|++|+||||+|+.+++.+.
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            344566799999999999999999999984

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.12  E-value=0.0054  Score=53.65  Aligned_cols=34  Identities=32%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+++|.|++|+||||+++.+.+.+   +.++.+++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEch
Confidence            489999999999999999999987   3356677644

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=96.08  E-value=0.0092  Score=50.49  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             CCCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ++.+.|+|+|. +|+|||+++-.|.+.|..+|.++.++-
T Consensus        19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK   57 (242)
T 3qxc_A           19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK   57 (242)
T ss_dssp             CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence            44577888887 999999999999999999999988764

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.08  E-value=0.0015  Score=57.55  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ..|+|.|+||+|||++|+++++.+
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             ceEEEECCCCccHHHHHHHHHHhC
Confidence            349999999999999999999987

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.07  E-value=0.0059  Score=65.55  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.+|.|+|+||+||||+|.+++.....+|..+.|++.+..
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence            368899999999999999999999988778889999997754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.07  E-value=0.0019  Score=57.80  Aligned_cols=27  Identities=30%  Similarity=0.231  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999999755

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.06  E-value=0.0046  Score=54.39  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+.-|+|+|.||+||||+|.+|.++
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            3677999999999999999999886

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.06  E-value=0.0017  Score=57.63  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ++.++.|+|++||||||+.+.|...+.... +.+.++
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~-g~i~i~  205 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISIE  205 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence            567899999999999999999998764322 344444

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.05  E-value=0.0038  Score=61.37  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ..+..++|.|+||+||||+|+.|++.+..
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~  227 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence            45567899999999999999999999843

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.02  E-value=0.0048  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ++...|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4556899999999999999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.00  E-value=0.0047  Score=48.24  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999975

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.99  E-value=0.0092  Score=56.85  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ....++++.|.+|+||||+|..|+..+...|.++..+|.|-.
T Consensus       325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~  366 (589)
T 1ihu_A          325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA  366 (589)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            455688889999999999999999999999999999999843

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.97  E-value=0.0046  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+.|.|++||||||+.+.|.....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            689999999999999999998763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.96  E-value=0.0065  Score=59.62  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=27.0

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ   49 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~   49 (272)
                      ...++..++|+|+||+||||+++.|++.+...
T Consensus       203 ~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~  234 (758)
T 1r6b_X          203 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQG  234 (758)
T ss_dssp             TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence            33456778999999999999999999998653

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.93  E-value=0.0083  Score=55.39  Aligned_cols=32  Identities=25%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEE
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGI-PAYA   55 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~-~~~~   55 (272)
                      .++|.|++||||||++..+.+.|...|. .+..
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~   79 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGETGIIL   79 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            8999999999999999999999987765 3443

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.93  E-value=0.0054  Score=52.65  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ...|+|.|+||+|||++|.+|+..+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3579999999999999999999975

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.92  E-value=0.0028  Score=51.39  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -.++..|+|.|.+||||||+.+.|...
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            356788999999999999999988743

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=95.91  E-value=0.013  Score=49.06  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=31.1

Q ss_pred             eEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         23 ICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        23 ~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +.|+|+|. +|+||||++-.|++.|..+|.++.++-
T Consensus         5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K   40 (228)
T 3of5_A            5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK   40 (228)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence            56889998 899999999999999999998887754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.91  E-value=0.0057  Score=46.87  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ...|++.|.+|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999998754

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.90  E-value=0.0035  Score=60.03  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++..++|.|+||+||||+|+.++..+.
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            446799999999999999999999874

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.87  E-value=0.0039  Score=54.74  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+.-|+|+|.||+||||+|.+|.++
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3566999999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.85  E-value=0.0064  Score=46.72  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+|+||||+...+...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999888753

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=95.84  E-value=0.011  Score=53.35  Aligned_cols=41  Identities=15%  Similarity=0.200  Sum_probs=33.7

Q ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388         20 QSNICLLFP-GLSGAGKTSISFQIESYLIA------QGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~-G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~   60 (272)
                      .++++|.+. |-.|+||||++-.|+..|..      .|.++.++|.|.
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~  153 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP  153 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence            446666554 88999999999999999973      588999999884

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.83  E-value=0.0034  Score=58.95  Aligned_cols=27  Identities=19%  Similarity=0.276  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.+|+|+|++||||||+.++|...+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            566799999999999999999998774

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.81  E-value=0.0054  Score=53.53  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+.++.|.|++||||||+.+.|. .+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            46789999999999999999999 54

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.79  E-value=0.0075  Score=46.36  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+|+||||+.+.|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4467999999999999999988753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.78  E-value=0.0054  Score=54.96  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++.++.|.|++||||||+.+.|...+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            56789999999999999999988544

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.76  E-value=0.0071  Score=52.77  Aligned_cols=31  Identities=23%  Similarity=0.252  Sum_probs=26.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+++|+|++|+||||+++.+.+.+     ++.+++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEe
Confidence            689999999999999999999876     3666664

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.71  E-value=0.0066  Score=48.23  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ++..-|++.|.+|+||||+...|...
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            45568999999999999999999854

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.71  E-value=0.0071  Score=48.57  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ...|+|.|.+||||||+.+.+....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.69  E-value=0.012  Score=62.45  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .++.+|+|.|+||+||||+|..++......|.++.|++.+.-.
T Consensus       730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~  772 (1706)
T 3cmw_A          730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL  772 (1706)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred             CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence            4678999999999999999999999887778889999987543

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=95.69  E-value=0.0071  Score=54.51  Aligned_cols=37  Identities=27%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .++++++|..|+||||+|..|+..+...|.++..+|.
T Consensus         2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~   38 (374)
T 3igf_A            2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL   38 (374)
T ss_dssp             CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence            4688999999999999999999999999999999987

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.68  E-value=0.0044  Score=61.20  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      +|.-|+|.|+||+|||.+|++++..+   +.+++.++..
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~  545 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP  545 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHH
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccc
Confidence            45568999999999999999999998   5555555543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.63  E-value=0.0066  Score=57.37  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.62  E-value=0.0085  Score=46.21  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+||||||+.+.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3457899999999999999998764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.62  E-value=0.0043  Score=58.12  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +..|+|.|+||+|||++|++|+..+
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHH
Confidence            3578999999999999999999877

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.62  E-value=0.0079  Score=48.50  Aligned_cols=26  Identities=23%  Similarity=0.192  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+.+.|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            45567999999999999999998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.60  E-value=0.011  Score=47.09  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+...|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.60  E-value=0.0065  Score=57.91  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|++||||||+.+.|...+.... +.+.+|+.++
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~-G~i~~~g~~~  407 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDS-GSICLDGHDV  407 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-CEEEECCEEh
Confidence            4678999999999999999999998763211 3445665433

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=95.59  E-value=0.0094  Score=45.91  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..-|++.|.+|+||||+.+.|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999998753

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.58  E-value=0.014  Score=61.96  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+||+||||+|..++......|.++.|++.+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~  421 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  421 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            6889999999999999999999988877788999999865

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.57  E-value=0.0075  Score=48.58  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..|+|.|.+||||||+.+.|...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.54  E-value=0.0074  Score=52.59  Aligned_cols=26  Identities=35%  Similarity=0.405  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+.++.|.|++||||||+.+.|+..+
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccc
Confidence            46789999999999999999998654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.54  E-value=0.0061  Score=58.08  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~  407 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDL  407 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEET
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccCCC-CCeEEECCEEc
Confidence            467899999999999999999998766321 12345665443

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=95.53  E-value=0.0076  Score=53.92  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.+.++-.|+||||+|-.|+..|...|.++.++|.|.
T Consensus         4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~   40 (361)
T 3pg5_A            4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP   40 (361)
T ss_dssp             EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            4455689999999999999999998999999999884

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.52  E-value=0.0067  Score=55.60  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             CCCeE--EEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNIC--LLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~l--I~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+|.+  +.|.|++||||||+.+.|...
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            46777  999999999999999999754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.52  E-value=0.0096  Score=46.53  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .++..|++.|.+|+||||+...|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3556899999999999999998865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.50  E-value=0.01  Score=45.47  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .|++.|.+|+||||+.+.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.01  Score=47.19  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +...|++.|.+||||||+...|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567999999999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.44  E-value=0.013  Score=45.44  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+...|++.|.+|+||||+...|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999864

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.42  E-value=0.01  Score=51.91  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=26.6

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +......++..++|.|++|+||||+|+++++.+
T Consensus        10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           10 KRIIEKSEGISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             HHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhC
Confidence            344444446789999999999999999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.41  E-value=0.011  Score=45.99  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            3457999999999999999988643

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=95.41  E-value=0.0087  Score=54.23  Aligned_cols=41  Identities=17%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             CCCeEEE-EEcCCCCCHHHHHHHHHHHHH------HcCCCEEEecCcc
Q psy17388         20 QSNICLL-FPGLSGAGKTSISFQIESYLI------AQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~-l~G~~GsGKSTlAr~La~~L~------~~g~~~~~ld~D~   60 (272)
                      .++++|. .+|-.|+||||++-.|+..|.      ..|.++.++|.|.
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~  156 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP  156 (403)
T ss_dssp             CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred             CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence            4555554 458999999999999999997      4688999999985

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.40  E-value=0.01  Score=46.85  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+|+||||+...|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.39  E-value=0.0089  Score=56.49  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|+.||||||+.+.|+-.+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            468899999999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.38  E-value=0.013  Score=46.10  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999998854

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.36  E-value=0.017  Score=62.19  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+||+||||+|..++......|.++.|+|.+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~  421 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  421 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence            6789999999999999999999998876777899999875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.36  E-value=0.012  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +...|+|.|.+|+||||+...|...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4467999999999999999998865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.35  E-value=0.011  Score=45.96  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..-|++.|.+|+||||+.+.|...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.34  E-value=0.012  Score=45.87  Aligned_cols=25  Identities=24%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+|+||||+.+.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.34  E-value=0.013  Score=45.79  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +..-|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            456799999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.30  E-value=0.012  Score=46.11  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+.+.|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Confidence            34567999999999999999988753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.30  E-value=0.012  Score=45.42  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..-|++.|.+|+||||+...|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999988753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.29  E-value=0.012  Score=45.88  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+||||||+.+.|...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4467999999999999999988753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.29  E-value=0.0082  Score=56.72  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|+-.+.
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999999997653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.29  E-value=0.0094  Score=47.38  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|+|.|.+|+||||+.+.+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.27  E-value=0.011  Score=53.94  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+.++.|.|++||||||+.+.|...+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            44589999999999999999998743

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.26  E-value=0.0039  Score=54.68  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++.++.|.|+|||||||+.+.|...+
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcccc
Confidence            56799999999999999999997654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.25  E-value=0.012  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|++.|.+|+||||+.+.|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5689999999999999998875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.011  Score=56.80  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            468899999999999999999999765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.21  E-value=0.014  Score=45.90  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ++..-|++.|.+|+||||+.+.|..
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHc
Confidence            3456799999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.18  E-value=0.011  Score=55.81  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +|.++.|.|+.||||||+.+.|+-.+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999998765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.18  E-value=0.011  Score=45.69  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|++.|.+|+||||+.+.+..
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            3589999999999999998853

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.17  E-value=0.0074  Score=57.72  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~i  419 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDI  419 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSCCS-EEEEEETTEEG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CeEEEECCEEh
Confidence            467899999999999999999998765311 12345665444

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.17  E-value=0.011  Score=46.56  Aligned_cols=25  Identities=36%  Similarity=0.705  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+...|++.|.+|+||||+...+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            5677899999999999999987763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.17  E-value=0.015  Score=46.06  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|++.|.+|+||||+.+.|...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999988643

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.14  E-value=0.02  Score=44.48  Aligned_cols=26  Identities=31%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+.+.+|.|+.||||||+..++.-.|
T Consensus        22 ~~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998776

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.14  E-value=0.0061  Score=58.04  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~  405 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNI  405 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEG
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEEh
Confidence            467899999999999999999998765321 12445666444

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.14  E-value=0.016  Score=46.08  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +...|++.|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.12  E-value=0.013  Score=45.67  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ..-|++.|.+|+||||+.+.|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45799999999999999999875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.11  E-value=0.013  Score=45.40  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La   43 (272)
                      -|++.|.+|+||||+...+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999986

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.11  E-value=0.015  Score=46.60  Aligned_cols=26  Identities=19%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+.+.+...
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45677999999999999999988743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.09  E-value=0.013  Score=45.63  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +..-|++.|.+|+||||+...|..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            346799999999999999998874

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.09  E-value=0.015  Score=49.60  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ...|+|.|.+||||||+..+|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.09  E-value=0.014  Score=45.08  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..-|++.|.+|+||||+.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.08  E-value=0.011  Score=56.81  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            578899999999999999999998655

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=95.08  E-value=0.037  Score=46.96  Aligned_cols=50  Identities=20%  Similarity=0.219  Sum_probs=32.6

Q ss_pred             cccchhhhhhhcCCCCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388          7 EGKESWLRDFKEGQSNICLLFPGLS-GAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus         7 ~~~~~~~r~~~~~~~~~lI~l~G~~-GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ++-+.++|..-. ...+.|+|+|.. |+||||++-.|.+.|..+|+++.++-
T Consensus        12 ~~~~~~~~~~~~-~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK   62 (251)
T 3fgn_A           12 SGLQGTENLYFQ-SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK   62 (251)
T ss_dssp             ----------CC-SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             chhhHHHHHhcc-cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            344455444332 334678888875 99999999999999999999887764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.08  E-value=0.016  Score=44.74  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|++.|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            5689999999999999999874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.07  E-value=0.015  Score=44.96  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..-|++.|.+|+||||+.+.|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999988753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.06  E-value=0.014  Score=45.59  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +..-|+|.|.+|+||||+...|..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            346799999999999999998864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.05  E-value=0.0079  Score=57.43  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~i~g~~i  407 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDV  407 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSCCS-EEEEEESSSBG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEECCEEc
Confidence            467899999999999999999998766311 12345665544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.04  E-value=0.015  Score=45.52  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+...|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34567999999999999999988753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.02  E-value=0.013  Score=56.17  Aligned_cols=27  Identities=19%  Similarity=0.208  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|+.||||||+.+.|+-.+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            357899999999999999999999765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.01  E-value=0.015  Score=44.76  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ..-|++.|.+|+||||+...|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45799999999999999998875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.01  E-value=0.015  Score=46.46  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|+|.|.+|+||||+.+.|...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3467999999999999999998753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.00  E-value=0.015  Score=53.49  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|..+.|.|++||||||+.+.|+...
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999999876

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.99  E-value=0.019  Score=45.42  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ..+...|++.|.+|+||||+.+.|..
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            45677899999999999999998874

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.98  E-value=0.013  Score=46.03  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +...|+|.|.+|+||||+...|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346799999999999999998874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.98  E-value=0.016  Score=51.65  Aligned_cols=27  Identities=19%  Similarity=-0.021  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|..+.|.|++||||||+.+.|+..+
T Consensus        69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           69 GIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999999876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.97  E-value=0.018  Score=45.08  Aligned_cols=26  Identities=23%  Similarity=0.160  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|++.|.+|+||||+.+.+...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999988753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.97  E-value=0.019  Score=45.88  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+|+||||+.+.|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44567999999999999999988764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.96  E-value=0.016  Score=48.31  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +...|+|.|.+|+||||+...|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4567999999999999999988753

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.96  E-value=0.024  Score=54.26  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+.+++++|+||+||||++..+...+.
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~  189 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAALI  189 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999888875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=94.96  E-value=0.011  Score=58.74  Aligned_cols=19  Identities=37%  Similarity=0.808  Sum_probs=17.8

Q ss_pred             CCeEEEEEcCCCCCHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSIS   39 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlA   39 (272)
                      +..+++|+|.|||||||+|
T Consensus        35 ~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           35 RDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             SSSEEEEESSTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            5789999999999999998

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.96  E-value=0.018  Score=45.52  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+...|++.|.+|+||||+...+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999998874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.95  E-value=0.017  Score=45.53  Aligned_cols=24  Identities=42%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..-|+|.|.+|+||||+...|...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999998753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=94.94  E-value=0.017  Score=53.67  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.|.|++||||||+.+.|+-.+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            7899999999999999999998774

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.92  E-value=0.016  Score=46.27  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=20.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +...|++.|.+|+||||+.+.+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999998875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.92  E-value=0.02  Score=45.79  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+||||||+...|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            34467999999999999999988753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.92  E-value=0.017  Score=51.78  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La   43 (272)
                      .+..-|+|.|.+||||||+++++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            456779999999999999999994

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.91  E-value=0.019  Score=45.63  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+..-|+|.|.+|+||||+...|..
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHc
Confidence            3456799999999999999998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.90  E-value=0.015  Score=45.52  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|++.|.+|+||||+...+...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            44567999999999999999988763

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.90  E-value=0.017  Score=45.15  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+|+||||+.+.|...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457999999999999999988753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.89  E-value=0.018  Score=45.37  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|+|.|.+|+||||+.+.|...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999988753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.88  E-value=0.016  Score=50.49  Aligned_cols=26  Identities=12%  Similarity=0.103  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++..|.|.|.||+||||+.++|...
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45568999999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.88  E-value=0.015  Score=55.73  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +.++.|.|++||||||+.+.|+-.+.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCC
Confidence            36799999999999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.87  E-value=0.019  Score=45.44  Aligned_cols=25  Identities=20%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      +..-|++.|.+|+||||+.+.|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.87  E-value=0.019  Score=44.16  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|++.|.+|+||||+...+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.86  E-value=0.021  Score=45.87  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+..-|+|.|.+|+||||+...|..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHh
Confidence            4567899999999999999999875

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=94.85  E-value=0.033  Score=45.49  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      ++ +|++.+.+|.||||.|-.++-+...+|.++.++
T Consensus        28 ~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v   62 (196)
T 1g5t_A           28 RG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV   62 (196)
T ss_dssp             CC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             Cc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            44 566666689999999999999998899999877

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.81  E-value=0.018  Score=46.39  Aligned_cols=25  Identities=32%  Similarity=0.495  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+..-|++.|.+|+||||+.+.+..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4456789999999999999998864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.81  E-value=0.021  Score=45.65  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+..-|++.|.+|+||||+...+..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999998853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.79  E-value=0.02  Score=45.47  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ++..-|+|.|.+|+||||+...|...
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcC
Confidence            34567999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	3e-52
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	3e-34
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	6e-28
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-19
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	1e-16
d1g8fa3	122	c.37.1.15 (A:390-511) ATP sulfurylase C-terminal d	5e-14
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	6e-13
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	2e-12
d1v47a1	132	b.122.1.3 (A:4-135) ATP sulfurylase N-terminal dom	4e-12
d1x6va1	161	b.122.1.3 (A:229-389) ATP sulfurylase N-terminal d	6e-12
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	7e-12
d1g8fa1	167	b.122.1.3 (A:2-168) ATP sulfurylase N-terminal dom	9e-12
d1m8pa1	170	b.122.1.3 (A:1-170) ATP sulfurylase N-terminal dom	9e-12
d1jhda1	173	b.122.1.3 (A:1-173) ATP sulfurylase N-terminal dom	4e-10
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-09
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	8e-09
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	1e-05
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	4e-05

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  167 bits (423), Expect = 3e-52
 Identities = 87/188 (46%), Positives = 123/188 (65%), Gaps = 7/188 (3%)

Query: 19  GQSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINANLAFSEEDRN 77
            Q  + +   GLS +GK++++ ++E  L+    + AY LDGDN+R G+N +L FSE DRN
Sbjct: 21  NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRN 80

Query: 78  ENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIH------RNANLEFFEVFVNTP 131
           EN+RR AE AK+FA+   IA+ SF+SP    RD AR++H          L F EV+V+ P
Sbjct: 81  ENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP 140

Query: 132 VEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIA 191
           VE+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++   +PV+     ++D + 
Sbjct: 141 VEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLD 200

Query: 192 AKGLIPAR 199
            KG +PA+
Sbjct: 201 TKGYLPAK 208

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-34
 Identities = 92/185 (49%), Positives = 126/185 (68%)

Query: 13  LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
           +   + G     +   GLSGAGKT++S  +E YL+  GIP Y LDGDN+R G+N NL FS
Sbjct: 10  VVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFS 69

Query: 73  EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
            EDR ENVRR AE AK+FA+ G + + SF+SP    R+ AR+IH  A+L FFEVFV+ P+
Sbjct: 70  PEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL 129

Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
            +CEQRDVKG YKKAR G+IK FTG+   YE P+ P+L+L+T +  V  C   V++++  
Sbjct: 130 HVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 189

Query: 193 KGLIP 197
           + ++P
Sbjct: 190 RDIVP 194

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score =  104 bits (258), Expect = 6e-28
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 19  GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAY-ALDGDNLRNGINANLAFSEEDRN 77
                 +   G   +GK +I+  ++  L  QG  +   L GD +R+ +++ L F+ EDR+
Sbjct: 3   ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62

Query: 78  ENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQ 137
            N++R A  A      G   + + ++P   +R  AR+    A   FF V V TP+E CEQ
Sbjct: 63  TNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQ 121

Query: 138 RDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
            D +G Y  AR G+IK FTGV  PYE P+  DL+++     V    + ++ ++ ++G + 
Sbjct: 122 SDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFLE 181

Query: 198 AR 199
            +
Sbjct: 182 RQ 183

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 80.8 bits (198), Expect = 3e-19
 Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 17/177 (9%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGI----------PAYALDGDNLRNGINANLAFSEE 74
           ++  G S AGK+ I   ++S L    +              +         +A+   S  
Sbjct: 6   IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65

Query: 75  DRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEI 134
                +  A     +        +         A  + R      +L+   V V     +
Sbjct: 66  PEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAV 125

Query: 135 CEQRDVKGHYKKAREGKIKSFTGVSQP-YEAPKNPDLILETVNVPVEKCANSVLDMI 190
            E R+       AR  ++                 D+ ++T +    +CA ++   +
Sbjct: 126 AEGRE------TARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 73.4 bits (179), Expect = 1e-16
 Identities = 28/176 (15%), Positives = 56/176 (31%), Gaps = 14/176 (7%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFSEEDRNEN 79
           LL  G  G+GK++I+  + +     G+P      D+L   I        L  S +     
Sbjct: 7   LLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 63

Query: 80  VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
           ++ AA+ A  +A+ G+  +   V            + R  +           +E C  R 
Sbjct: 64  MQIAADVAGRYAKEGYFVILDGV-VRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG 122

Query: 140 VKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGL 195
                       + S       +E       +L       ++   S ++ + +   
Sbjct: 123 GDSLSDPLVVADLHSQFADLGAFE-----HHVLPVSGKDTDQALQSAINALQSGRF 173

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.7 bits (158), Expect = 5e-14
 Identities = 12/175 (6%), Positives = 34/175 (19%), Gaps = 64/175 (36%)

Query: 24  CLLFPGLSGAGKTSISFQIESYL--IAQGIPAYALDGDNLRNGINANLAFSEEDRNENVR 81
            ++        +  +S  + S       G      + +N                     
Sbjct: 8   SIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT------------------- 48

Query: 82  RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
                     E   +                ++   +       +      +       +
Sbjct: 49  ----------ELLSLI---------------QDFIGSG--SGLIIPDQWEDDKDSVVGKQ 81

Query: 142 GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
             Y                  +   + D+ LE+ + P+      V+  +   G  
Sbjct: 82  NVY----------------LLDTSSSADIQLESADEPISHIVQKVVLFLEDNGFF 120

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 63.5 bits (153), Expect = 6e-13
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 15/177 (8%)

Query: 19  GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE 78
              +   +  G+SG+GK++++ ++   L A  +    L        + +    +++DR  
Sbjct: 3   NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKP 62

Query: 79  NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
            ++   + A        ++L    +     RD  RE + N       +++    ++ E R
Sbjct: 63  WLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPN----LSFIYLKGDFDVIESR 118

Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNP-----DLILETVNVPVEKCANSVLDMI 190
                  KAR+G       +   +E  + P     D+++  ++ P+E    S +++I
Sbjct: 119 ------LKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVI 169

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 7/171 (4%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
           L F   SG GKT++  ++   L A+GI    +   +    ++     S E R     +  
Sbjct: 5   LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64

Query: 85  ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
             ++                      R      +      E F +  +           +
Sbjct: 65  VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLI--LVEGFKHEEIAKIVLFRDGAGH 122

Query: 145 KKAREGKIKSFTGVSQPYEAPKN-PDLILETVNVPVEKCANSVLDMIAAKG 194
           +       +    V+       +   L +      VE  A+ V++ +  + 
Sbjct: 123 RPEELVIDRHVIAVASDVPLNLDVALLDIND----VEGLADFVVEWMQKQN 169

>d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 132

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
           LP L+IG  +   ++ +A G   P+KGFM  +E L   H   L +    ++ I+L    +
Sbjct: 2   LPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILLQFREK 61

Query: 267 DK 268
            +
Sbjct: 62  PR 63

>d1x6va1 b.122.1.3 (A:229-389) ATP sulfurylase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSN--VNQSVAIVLA 262
           E LP L I  +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+ L     +N SV IVL 
Sbjct: 24  ETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLDGGVINLSVPIVLT 83

Query: 263 VTGEDKQRLE 272
            T EDK+RL+
Sbjct: 84  ATHEDKERLD 93

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.1 bits (147), Expect = 7e-12
 Identities = 29/199 (14%), Positives = 56/199 (28%), Gaps = 33/199 (16%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
           ++  GL   GKT IS ++  YL   G+P    +    R  +       E    +N     
Sbjct: 5   IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 64

Query: 85  ECAKMFAEC------------GFIALCSFVSPTAAARDRAREIHRNAN--LEFFEVFVNT 130
              +                 G +A+    + T   R               F E     
Sbjct: 65  IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124

Query: 131 PVEI----------------CEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILET 174
           P  I                 +  +    + +  E    S+  + +  +   +    ++ 
Sbjct: 125 PEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLS---YIKI 181

Query: 175 VNVPVEKCANSVLDMIAAK 193
           ++V      N V D I ++
Sbjct: 182 MDVGQSYVVNRVADHIQSR 200

>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 167

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (145), Expect = 9e-12
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
           +   ++    L  +++I  G  SPL GF+ E+++   +  + L      ++ I L V   
Sbjct: 31  ILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEA 90

Query: 267 DKQRLE 272
              +++
Sbjct: 91  FANQIK 96

>d1m8pa1 b.122.1.3 (A:1-170) ATP sulfurylase N-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 170

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 60.0 bits (145), Expect = 9e-12
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
            E+LP + +    L  +++I  G  SPL+GFM + ++ +    N L      S+ I L  
Sbjct: 28  AESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVFSMPITLDA 87

Query: 264 TGEDKQRL 271
           + E     
Sbjct: 88  SQEVIDEK 95

>d1jhda1 b.122.1.3 (A:1-173) ATP sulfurylase N-terminal domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]} Length = 173

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
            E+LP + I         ++  G+ SPL+GFM   + +      TL       V ++  +
Sbjct: 28  AESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAAEKMTLSDGSFFPVPVLCLL 87

Query: 264 TGEDK 268
              D 
Sbjct: 88  ENTDA 92

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 21/172 (12%), Positives = 53/172 (30%), Gaps = 10/172 (5%)

Query: 29  GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE---NVRRAAE 85
           G +G GK++   ++ + L         ++GD + + +        E         +   +
Sbjct: 9   GPAGVGKSTTCKRLAAQLDNSAY----IEGDIINHMVVGGYRPPWESDELLALTWKNITD 64

Query: 86  CAKMFAECGFIALCSFVSPTAAARD-RAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
               F       +  +++    A         +  ++E   + + T  E   +RD     
Sbjct: 65  LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL--R 122

Query: 145 KKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
           KK  +   +    V +      +      T ++      + V ++      I
Sbjct: 123 KKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFI 174

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (122), Expect = 8e-09
 Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 14/174 (8%)

Query: 22  NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVR 81
           NI L+  G  GAGK++I  Q+   L    +  Y  D +  +          + +  E  R
Sbjct: 4   NIFLV--GPMGAGKSTIGRQLAQQL---NMEFYDSDQEIEKRTGADVGWVFDLEGEEGFR 58

Query: 82  RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
              E            + +    +  +R+    +          V++ T +E    R  +
Sbjct: 59  DREEKVINELTEKQGIVLATGGGSVKSRETRNRLSAR----GVVVYLETTIEKQLARTQR 114

Query: 142 GHYKKAREGKIKSFTGVSQPYEA-----PKNPDLILETVNVPVEKCANSVLDMI 190
              +     +      +            +  D+ + T +   +  AN ++ M+
Sbjct: 115 DKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHML 168

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 12/138 (8%)

Query: 25  LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRN------- 77
           +L  G  G+GK++ +       IA+    Y ++ D+ R  I A+    E           
Sbjct: 5   ILTIGCPGSGKSTWA----REFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 78  -ENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICE 136
                  A+      +     + S  +     R       +    +      + P     
Sbjct: 61  TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 137 QRDVKGHYKKAREGKIKS 154
           +R+ K   K      ++S
Sbjct: 121 KRNSKRGTKAVPIDVLRS 138

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 24/190 (12%), Positives = 52/190 (27%), Gaps = 26/190 (13%)

Query: 26  LFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRN------- 77
           +  G+ G GK+++  +++  L  QGI    ++ GD +           + D         
Sbjct: 5   IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64

Query: 78  ------ENVRRAAECAKMFAECGFIALC--SFVSPTAAARDRAREIHRNANLEFFEVFVN 129
                 +  +  AE A+   E            +P+         +    N     +   
Sbjct: 65  QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEA 124

Query: 130 TPVEICEQR---------DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVE 180
            P  I  ++         D               +   +    A      ++  V     
Sbjct: 125 DPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGS-TVKVIVNVEGDPS 183

Query: 181 KCANSVLDMI 190
             AN ++  +
Sbjct: 184 IAANEIIRSM 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	100.0
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.93
d1g8fa1	167	ATP sulfurylase N-terminal domain {Baker's yeast (	99.92
d1m8pa1	170	ATP sulfurylase N-terminal domain {Fungus (Penicil	99.91
d1x6va1	161	ATP sulfurylase N-terminal domain {Human (Homo sap	99.91
d1jhda1	173	ATP sulfurylase N-terminal domain {Sulfur-oxidizin	99.91
d1v47a1	132	ATP sulfurylase N-terminal domain {Thermus thermop	99.9
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.89
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.82
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.81
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.8
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.76
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.69
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.64
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.63
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.62
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.61
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	99.61
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.59
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.59
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.52
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.52
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.46
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.46
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.45
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.41
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.41
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.37
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.35
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.34
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.33
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.33
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.31
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.28
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.26
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.26
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.25
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.24
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.23
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.2
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.07
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.01
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.95
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.92
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.91
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.91
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.87
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.87
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.86
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.84
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.8
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.6
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.57
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.54
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.5
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.47
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.35
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.3
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.28
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.26
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.26
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.17
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.06
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.04
d1okkd2	207	GTPase domain of the signal recognition particle r	98.02
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.95
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.94
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.85
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.83
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.81
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.73
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.65
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.62
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.6
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.59
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.59
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.53
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.51
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.47
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.47
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.46
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.44
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.42
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.4
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.4
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.39
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.35
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.34
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.32
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.32
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.3
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.28
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.28
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	97.24
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.22
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	97.22
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.21
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.19
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.17
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.12
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.05
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.02
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.88
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.88
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.87
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.87
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.86
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.86
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.85
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.84
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.83
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.83
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.81
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.8
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.73
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.72
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.72
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.71
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.71
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.7
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.64
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.61
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.6
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.6
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.6
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.54
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.53
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.51
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.5
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.43
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.43
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.4
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.35
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.35
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.35
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.33
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.32
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.31
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.23
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.18
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.14
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.03
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.69
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.69
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.68
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.64
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.6
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.56
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.55
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.42
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.4
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.36
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.32
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.3
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.28
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.24
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.24
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.23
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.21
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	95.19
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	95.18
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.16
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.13
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	95.1
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.06
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.01
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.99
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.96
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.88
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.87
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.84
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.82
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.82
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.79
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	94.77
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.77
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.76
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.7
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.64
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.64
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.57
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.55
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.51
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	94.51
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.46
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.46
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.45
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.39
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.34
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.33
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.31
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.24
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.24
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	94.23
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.21
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.18
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	94.13
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.04
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.03
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.02
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	93.86
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.84
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.82
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.69
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.58
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.53
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.46
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.43
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.34
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.32
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.25
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.22
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.16
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.02
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.84
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.67
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	92.61
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	92.54
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.5
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.39
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.35
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.15
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.07
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.07
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.04
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.98
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	91.91
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.79
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.67
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	91.33
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	91.3
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	91.23
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.07
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.98
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.96
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.85
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.82
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.79
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.23
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.03
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	89.89
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	89.65
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.75
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	88.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.43
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	87.22
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.15
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	86.77
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	86.59
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	85.53
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	85.21
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	84.94
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	84.87
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	84.82
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	84.6
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	83.9
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	83.85
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.18
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.75
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	82.43
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	82.28
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	81.33

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=100.00  E-value=1.1e-32  Score=230.44  Aligned_cols=186  Identities=47%  Similarity=0.826  Sum_probs=172.5

Q ss_pred             hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy17388         13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA   91 (272)
Q Consensus        13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~   91 (272)
                      .|..+.+++|.+|||+|+|||||||+|++|+++|.. .++++.++|+|.+|..+..+.+|+..++...+.++..++..+.
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~   94 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFA   94 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHh
Confidence            467888899999999999999999999999988854 5778999999999999988899999999999999999999999


Q ss_pred             hCCCeEEEcCCCCcHHHHHHHHHHHH------hCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388         92 ECGFIALCSFVSPTAAARDRAREIHR------NANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP  165 (272)
Q Consensus        92 ~~g~~VI~d~~~~~~~~r~~~~~~~~------~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~  165 (272)
                      .+|..||++.+++....|+.++++..      ..+.+++.|||+||.++|.+|..++.|.+...+.+.++.+++..|++|
T Consensus        95 ~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~~~~~gvd~~ye~P  174 (208)
T d1m7ga_          95 DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAP  174 (208)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCCCCC
T ss_pred             ccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCcccceecccccCCCC
Confidence            99999999999999999999988763      356789999999999999999999999998888888999999999999


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      ..++++|||+..++++++++|++.|.++|+||+
T Consensus       175 ~~~dl~Idt~~~s~~e~~~~Ii~~L~~~~~i~~  207 (208)
T d1m7ga_         175 ANPEVHVKNYELPVQDAVKQIIDYLDTKGYLPA  207 (208)
T ss_dssp             SSCSEEEECSSSCHHHHHHHHHHHHHHTTCSCC
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999986

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=181.85  Aligned_cols=183  Identities=50%  Similarity=0.945  Sum_probs=134.0

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGF   95 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~   95 (272)
                      .+.+++|++|+|+|+|||||||+|++|+++|...+....+++.|.++.....+..+.......+.+.....+......+.
T Consensus        13 ~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (195)
T d1x6va3          13 TRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGL   92 (195)
T ss_dssp             SSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            34556899999999999999999999999998888888889988888877666777777777777777778888889999


Q ss_pred             eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCC
Q psy17388         96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETV  175 (272)
Q Consensus        96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~  175 (272)
                      .++++........+..++.+.......+..+++.++...+.+|..++............+..++..|+.|..++++|||+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~dl~IdT~  172 (195)
T d1x6va3          93 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTD  172 (195)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCCSSCSEEECTT
T ss_pred             ccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCCCCCCEEEECC
Confidence            99999888888888888888887788888889999998888887665443333333444555678899898999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCCC
Q psy17388        176 NVPVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       176 ~~~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      +.+++|++++|++.|+++|+||.
T Consensus       173 ~~s~ee~~~~Il~~l~~~~~i~~  195 (195)
T d1x6va3         173 SCDVNDCVQQVVELLQERDIVPV  195 (195)
T ss_dssp             TSCHHHHHHHHHHHHHHTTSSCS
T ss_pred             CCCHHHHHHHHHHHHHHCcCCCC
Confidence            99999999999999999999993

>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-26  Score=185.31  Aligned_cols=68  Identities=19%  Similarity=0.288  Sum_probs=64.9

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~  271 (272)
                      +..+|++.|+++++||+++|+.|+||||+|||+++||+||+++|||+||++|||||+|+|+++.++.+
T Consensus        28 a~~l~~~~l~~~~~~dle~l~~G~fsPL~GFM~~~d~~sV~~~mrL~~G~~wpiPI~L~v~~~~~~~i   95 (167)
T d1g8fa1          28 SSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQI   95 (167)
T ss_dssp             CTTSEEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHHHHSBCTTCCBCCSCCCEEECHHHHTTC
T ss_pred             ccCCceeeCCHHHHHHHHHHhcCCCCCccccccHHHHHHHHHhCcCCCCCcCCccEEEeccHHHHhhc
Confidence            34689999999999999999999999999999999999999999999999999999999999988765

>d1m8pa1 b.122.1.3 (A:1-170) ATP sulfurylase N-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.91  E-value=1.6e-25  Score=179.62  Aligned_cols=67  Identities=27%  Similarity=0.329  Sum_probs=64.0

Q ss_pred             hhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhh
Q psy17388        203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQ  269 (272)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~  269 (272)
                      .+..||++.|+++++||+++|+.|+||||+|||+++||+||+++|||+||.+|||||+|+|+++.++
T Consensus        27 ~a~~lp~i~l~~~~~~dle~l~~G~fsPL~GFM~~~d~~sVl~~~rl~~G~~wpiPI~L~v~~~~~~   93 (170)
T d1m8pa1          27 EAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVFSMPITLDASQEVID   93 (170)
T ss_dssp             HHTTSCEEEECHHHHHHHHHHHTSTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCCEECHHHHH
T ss_pred             HhccCCeEecCHHHHHHHHHHHcCCcCCcCCcccHHHHHHHHHhCccCcCCCCCceEEEecchhhhh
Confidence            3788999999999999999999999999999999999999999999999999999999999998654

>d1x6va1 b.122.1.3 (A:229-389) ATP sulfurylase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-25  Score=177.25  Aligned_cols=69  Identities=55%  Similarity=0.920  Sum_probs=64.8

Q ss_pred             hhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCc--cceeEEEecChhhhhhc
Q psy17388        203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVN--QSVAIVLAVTGEDKQRL  271 (272)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~--~~~pi~l~~~~~~~~~~  271 (272)
                      .+.+||++.|+++++||++||+.|+||||+|||+++||+||+++|||+||.+  |||||+|+++++++..+
T Consensus        22 ~a~~lp~i~l~~~~~~dl~~L~~G~fsPL~GFM~~~d~~sVl~~~rL~~G~~~~~pIPI~L~v~~~~~~~~   92 (161)
T d1x6va1          22 DAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLDGGVINLSVPIVLTATHEDKERL   92 (161)
T ss_dssp             HHHTSCEEECCHHHHHHHHHHHTTTTTTCCSSCCHHHHHHHHHHSEECTTSCEECCSCCCEEECHHHHHHH
T ss_pred             HHhhCCeEecCHHHHHHHHHHHhhccccccccccHHHHHHHHHhCEecCccccCCccceeccccHhhhhcc
Confidence            3788999999999999999999999999999999999999999999999965  99999999999987654

>d1jhda1 b.122.1.3 (A:1-173) ATP sulfurylase N-terminal domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]

Probab=99.91  E-value=1.4e-25  Score=180.95  Aligned_cols=65  Identities=23%  Similarity=0.323  Sum_probs=62.4

Q ss_pred             hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhh
Q psy17388        204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDK  268 (272)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~  268 (272)
                      +..||+|.|+++++||+++|++||||||+|||+++||+|||++|||+||.+|||||+|+|+++++
T Consensus        28 a~~lp~i~l~~~~l~dle~i~~G~fsPL~GFM~~~d~~sVl~~~rL~~G~~wpiPI~L~v~~~~~   92 (173)
T d1jhda1          28 AESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAAEKMTLSDGSFFPVPVLCLLENTDA   92 (173)
T ss_dssp             HTTSCEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCCEESCSTT
T ss_pred             HhhCCeEecCHHHHHHHHHHhcCCcCCcCCcccHHHHHHHHHhCEeCCCCcCCCceeecccchhh
Confidence            67899999999999999999999999999999999999999999999999999999999987654

>d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: ATP sulfurylase N-terminal domain
domain: ATP sulfurylase N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=3.3e-25  Score=170.31  Aligned_cols=62  Identities=29%  Similarity=0.382  Sum_probs=59.9

Q ss_pred             cCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhh
Q psy17388        206 ALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGED  267 (272)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~  267 (272)
                      +||++.|+++++||+++|+.|+||||+|||+++||.||+++|||+||.+|||||+|+|+++.
T Consensus         1 slp~l~l~~~~~~dle~i~~G~fsPL~gFM~~~d~~sVl~~~rl~~G~~wpiPi~L~v~~~~   62 (132)
T d1v47a1           1 TLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILLQFREKP   62 (132)
T ss_dssp             CCCEEECCHHHHHHHHHHHTTTTTTCCSBCCHHHHHHHHHHSBCTTSCBCCSCCCEEESSCC
T ss_pred             CCCeEEcCHHHHHHHHHHhcCCcCCccccCCHHHHHHHHHhCCccCCCcCCceEEEEccccc
Confidence            58999999999999999999999999999999999999999999999999999999998753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.89  E-value=1.5e-21  Score=156.28  Aligned_cols=179  Identities=30%  Similarity=0.522  Sum_probs=123.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-EEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIP-AYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~-~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      +.+|.+|+|+|+|||||||+|++|+++|...++. ..+++.|..+...........+............+........++
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAV   82 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhccccee
Confidence            4689999999999999999999999999766554 345555555444333333333333333333333344444455555


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV  177 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~  177 (272)
                      +............. ..........+..++++++......|...+.+..........+......|+.|..++++|||+++
T Consensus        83 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~IDT~~~  161 (183)
T d1m8pa3          83 IAAPIAPYEESRKF-ARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQ  161 (183)
T ss_dssp             EEECCCCCHHHHHH-HHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTTTS
T ss_pred             ecccchhhhHHHHH-HHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhhhhhhhcccccCCCCCcEEEECCCC
Confidence            55544444333333 33344455677888999999999888876655555555555566677788888889999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCCC
Q psy17388        178 PVEKCANSVLDMIAAKGLIPA  198 (272)
Q Consensus       178 ~~ee~~~~I~~~L~~~~~~~~  198 (272)
                      +++|++++|++.|+++|+|+-
T Consensus       162 s~~e~v~~I~~~L~~~g~~~~  182 (183)
T d1m8pa3         162 SVRSIVHEIILVLESQGFLER  182 (183)
T ss_dssp             CHHHHHHHHHHHHHHTTTTCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999974

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.82  E-value=5.6e-20  Score=146.64  Aligned_cols=160  Identities=21%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-------------ccCCCCHHHHH-HHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-------------ANLAFSEEDRN-ENVRRAAE   85 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-------------~~~~~~~~~~~-~~~~~i~~   85 (272)
                      +.+++|+|+|+|||||||+|++|++.|   |.+++.++.|.+.....             .+..+...... ..++.+..
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAE   77 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc---CCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHH
Confidence            356799999999999999999999999   66677788776544321             01111111222 23344455


Q ss_pred             HHHHHHhCCCeEEEcCCC-CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-ccccCC
Q psy17388         86 CAKMFAECGFIALCSFVS-PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-VSQPYE  163 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~-~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-~~~~ye  163 (272)
                      .+..+.+.+..++.+... .....+..+....  .+.++..|||+||++++.+|+..|      ..+...+.. ....++
T Consensus        78 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~v~l~~~~e~~~~R~~~R------~~~~~~~~~~~~~~~~  149 (178)
T d1qhxa_          78 GVVAMARAGARIIIDDVFLGGAAAQERWRSFV--GDLDVLWVGVRCDGAVAEGRETAR------GDRVAGMAAKQAYVVH  149 (178)
T ss_dssp             HHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH--TTCCEEEEEEECCHHHHHHHHHHT------SSSCTTHHHHHTTGGG
T ss_pred             HHHHHHhhccceEEeeeecchHHHHHHHHHhh--cCCceeecccCCCHHHHHHHHHhc------CCcchhhhhhhhhhhh
Confidence            667777888776655432 3223333333333  355788999999999999998543      222222211 223344


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        164 APKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       164 ~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      .+..++++|||++.+++|++++|.+++
T Consensus       150 ~~~~~dl~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         150 EGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             TTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            566789999999999999999998654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.6e-19  Score=141.71  Aligned_cols=158  Identities=19%  Similarity=0.296  Sum_probs=109.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      ++.+.+|+|+|+|||||||+|++|++++     ++.+++.|.+.....     ....+...........+...+......
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRT   77 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999     567788887765432     233455555555566666666666677


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc---cccCCCCC--CC
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV---SQPYEAPK--NP  168 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~---~~~ye~~~--~~  168 (272)
                      +..++.++.......++    .+...+.++..|||+||++++.+|+.+|.      ++......+   ...|+.|.  .+
T Consensus        78 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~------~~~~~~~~~~~~~~~~e~~~~~e~  147 (171)
T d1knqa_          78 NKVSLIVCSALKKHYRD----LLREGNPNLSFIYLKGDFDVIESRLKARK------GHFFKTQMLVTQFETLQEPGADET  147 (171)
T ss_dssp             CSEEEEECCCCSHHHHH----HHHTTCTTEEEEEEECCHHHHHHHHHTST------TCCCCHHHHHHHHHHCCCCCTTCT
T ss_pred             cCceEeeccchHHHHHH----HHHHhCCCceEEeecCCHHHHHHHHHhCc------CCCccHHHHHhhHHHhhCCCcccC
Confidence            77777777666555444    34556678899999999999999996552      111111111   12344332  23


Q ss_pred             -cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        169 -DLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       169 -~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                       .++||++ .++++++++|++.|++
T Consensus       148 ~~~~id~~-~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         148 DVLVVDID-QPLEGVVASTIEVIKK  171 (171)
T ss_dssp             TEEEEECS-SCHHHHHHHHHHHHHC
T ss_pred             CEEEEeCC-CCHHHHHHHHHHHhcC
Confidence             3667765 7999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.80  E-value=5.2e-20  Score=147.04  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=111.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-----CCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-----LAFSEEDRNENVRRAAECAKMFAECG   94 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~g   94 (272)
                      +.|++|+|+|+|||||||+|++|++++   |.+++++|.|.++..+...     ...........+......+..+...+
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~l---g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEG   78 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcC
Confidence            467899999999999999999999988   7889999999887765432     12223333444455555666677788


Q ss_pred             CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC-CCCcEEEe
Q psy17388         95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP-KNPDLILE  173 (272)
Q Consensus        95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~-~~~~~~Id  173 (272)
                      ..||++.... ...+..    ....+..+..|||+|+++++.+|+.+|.....  ........+...|..+ ...+++||
T Consensus        79 ~~vi~~~~~~-~~~~~~----~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~id  151 (176)
T d1zp6a1          79 YFVILDGVVR-PDWLPA----FTALARPLHYIVLRTTAAEAIERCLDRGGDSL--SDPLVVADLHSQFADLGAFEHHVLP  151 (176)
T ss_dssp             CEEEECSCCC-TTTTHH----HHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--CCHHHHHHHHHHTTCCGGGGGGEEE
T ss_pred             CCeEeccccc-HHHHHH----HHhcccccccccCCCCHHHHHHHHHhCCCccc--cchhhHHHHHHHHhhcccccCEEEE
Confidence            8888776442 122222    23345577889999999999999976532110  0011111223333332 23468899


Q ss_pred             CCCCCHHHHHHHHHHHHHhC
Q psy17388        174 TVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~~~  193 (272)
                      |++.++++++++|++.|+..
T Consensus       152 t~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         152 VSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             CTTCCTTTTTTTTHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999875

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=3.1e-18  Score=135.72  Aligned_cols=167  Identities=12%  Similarity=0.098  Sum_probs=109.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC---CCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA---FSEEDRNENVRRAAECAKMFAECGFIALC   99 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~---~~~~~~~~~~~~i~~~~~~~~~~g~~VI~   99 (272)
                      ++|+|+|+|||||||+|++|++.++    ..+++++|.++..+.....   ............+......+...+..+++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   78 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVL   78 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC----CCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            6899999999999999999999983    4567888888775543322   12222233344555666777788888888


Q ss_pred             cCCCCcHHHHHHHHHHHH-hCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388        100 SFVSPTAAARDRAREIHR-NANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP  178 (272)
Q Consensus       100 d~~~~~~~~r~~~~~~~~-~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~  178 (272)
                      +........+........ ..+.++.++||++|.+++.+|+..|........  ..+......+.......++|||++.+
T Consensus        79 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~~~~  156 (176)
T d2bdta1          79 DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE--RCLELVEEFESKGIDERYFYNTSHLQ  156 (176)
T ss_dssp             ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG--GGGHHHHHHHHTTCCTTSEEECSSSC
T ss_pred             ccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhH--HHHHHHHHHHhCCCCCeEEEECCCCC
Confidence            776654444443333222 245577889999999999999977632211110  11111122122223456889999999


Q ss_pred             HHHHHHHHHHHHHhCCC
Q psy17388        179 VEKCANSVLDMIAAKGL  195 (272)
Q Consensus       179 ~ee~~~~I~~~L~~~~~  195 (272)
                      ++++.+.|.+.+....+
T Consensus       157 ~~~~~~~I~~i~~~~r~  173 (176)
T d2bdta1         157 PTNLNDIVKNLKTNPRF  173 (176)
T ss_dssp             GGGHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhcCCe
Confidence            99999999999887654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2e-18  Score=138.91  Aligned_cols=127  Identities=13%  Similarity=0.158  Sum_probs=98.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL   98 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI   98 (272)
                      ..+|.+|+++|+|||||||+|+.|++.+     ++.+++.|.++.                ...+...++..+++|..||
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vI   69 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS----------------WQRCVSSCQAALRQGKRVV   69 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGG-----TCEEEEHHHHCS----------------HHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CCEEEchHHHHH----------------HHHHHHHHHHHHHCCCCce
Confidence            4678999999999999999999998876     577788887653                1223445566778999999


Q ss_pred             EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--cccccccCCCCC
Q psy17388         99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--FTGVSQPYEAPK  166 (272)
Q Consensus        99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--~~~~~~~ye~~~  166 (272)
                      +|.++.....|..+.++++++|+++.+||+++|.+++.+|+..|.........+..  +..+...|++|.
T Consensus        70 iD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe~P~  139 (172)
T d1yj5a2          70 IDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPT  139 (172)
T ss_dssp             EESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCC
T ss_pred             eeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999777432222112211  333456788774

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.69  E-value=4.9e-18  Score=134.95  Aligned_cols=151  Identities=21%  Similarity=0.285  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-ccC-CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-ANL-AFSEEDRNENVRRA-AECAKMFAECGFIALCS  100 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~~-~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d  100 (272)
                      .|+|+|+|||||||+|+.|++.|     ++.++|.|.+.+... ... .+.......+++.. ..+...+...+..|++.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l-----~~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~   76 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIAT   76 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh-----CCCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhcccccccc
Confidence            38888999999999999999999     567788886633211 010 01111122333333 34455666666677765


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh--c---ccccc-ccccccCCCCCCCcEEEeC
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE--G---KIKSF-TGVSQPYEAPKNPDLILET  174 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~--~---~~~~~-~~~~~~ye~~~~~~~~Idt  174 (272)
                      .....  ..    ....+.+   .+|||++|.+++.+|+.++.... |.  .   .++.+ ......|+.  .++++|||
T Consensus        77 ~g~~~--~~----~~l~~~~---~vI~L~~s~~~l~~Rl~~~~~~~-Rp~~~~~~~~~~l~~~r~~~Y~~--~ad~~Idt  144 (161)
T d1viaa_          77 GGGFV--NV----SNLEKAG---FCIYLKADFEYLKKRLDKDEISK-RPLFYDEIKAKKLYNERLSKYEQ--KANFILNI  144 (161)
T ss_dssp             CTTGG--GS----TTGGGGC---EEEEEECCHHHHTTCCCGGGTTT-SCTTCCHHHHHHHHHHHHHHHHH--HCSEEEEC
T ss_pred             ccchh--hH----HHHHhCC---eEEEeccchHHHHHHHccccccc-cccccCchHHHHHHHHHHHHHHh--hCCEEEEC
Confidence            54432  11    1233333   67999999999999986542211 10  0   01111 111122432  46899999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy17388        175 VNVPVEKCANSVLDMIA  191 (272)
Q Consensus       175 ~~~~~ee~~~~I~~~L~  191 (272)
                      ++.+++|++++|++.|+
T Consensus       145 ~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         145 ENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             TTCCHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            99999999999998873

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.64  E-value=9.5e-16  Score=119.33  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=86.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----cCCCCHHHHHHHHHHHHHHHHHHHhCC--
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFSEEDRNENVRRAAECAKMFAECG--   94 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~g--   94 (272)
                      ..+|+|+|+|||||||+|++|.+...    ++.+++.|.++..+..     ...+...................+..+  
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDS   77 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST----TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC----CCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcc
Confidence            35899999999999999999877642    6888998888764432     223444333333333334445555544  


Q ss_pred             -CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         95 -FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        95 -~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                       ..+|.+..+.....+..+..++...+.++.+|||++|.+++.+|+.+|
T Consensus        78 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R  126 (152)
T d1ly1a_          78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR  126 (152)
T ss_dssp             CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred             CCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHcc
Confidence             468888888777888888899998899999999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.63  E-value=1.6e-16  Score=126.97  Aligned_cols=154  Identities=14%  Similarity=0.159  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cC-CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NL-AFSEEDRNENVRRA-AECAKMFAECGFIALCS  100 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~-~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d  100 (272)
                      .|+|+|+|||||||+|+.|+++|     ++.++|.|.+.+.... .. .+.......+++.. ..........+.++.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L-----g~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~   78 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL-----GYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATG   78 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh-----CCCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhccccceeccc
Confidence            47788999999999999999999     5678899876543211 10 01112223333333 22333333333333333


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-----ccccccc----cccCCCCCCCcEE
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-----IKSFTGV----SQPYEAPKNPDLI  171 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-----~~~~~~~----~~~ye~~~~~~~~  171 (272)
                      .....   ....+.+++..+   .+|||++|.+++.+|+..+.....|...     .+.+..+    ...|+  ..++++
T Consensus        79 ~~~~~---~~~~~~~l~~~~---~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~--~~a~~~  150 (170)
T d1e6ca_          79 GGMVL---LEQNRQFMRAHG---TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQ--DVAHYV  150 (170)
T ss_dssp             TTGGG---SHHHHHHHHHHS---EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHH--HHCSEE
T ss_pred             ccchh---hhHHHHhhhccc---eeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHH--HcCCEE
Confidence            32221   122233344444   6799999999999998654222111100     0001111    11122  135789


Q ss_pred             EeCCCCCHHHHHHHHHHHHH
Q psy17388        172 LETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L~  191 (272)
                      |||+ .++++++++|++.|.
T Consensus       151 Id~~-~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         151 VDAT-QPPAAIVCELMQTMR  169 (170)
T ss_dssp             EETT-SCHHHHHHHHHHHTT
T ss_pred             EcCC-CCHHHHHHHHHHHcC
Confidence            9986 699999999988763

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=5.3e-17  Score=129.18  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-ccC-CCCHHHHHHHHHHH-HHHHHHH-HhCCCeE
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-ANL-AFSEEDRNENVRRA-AECAKMF-AECGFIA   97 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~~-~~~~~~~~~~~~~i-~~~~~~~-~~~g~~V   97 (272)
                      |+ |+|+|+|||||||+|+.|+++|     +..++|.|.+.+... ... .+........+++. .+....+ .....++
T Consensus         2 p~-IvliG~~G~GKSTig~~La~~l-----~~~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi   75 (165)
T d2iyva1           2 PK-AVLVGLPGSGKSTIGRRLAKAL-----GVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVL   75 (165)
T ss_dssp             CS-EEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred             Cc-EEEECCCCCCHHHHHHHHHHHh-----CCCeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccc
Confidence            44 5566999999999999999999     455678776533211 000 01111112223332 2223333 3344444


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh-hhhcc----ccccc-cccccCCCCCCCcEE
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK-AREGK----IKSFT-GVSQPYEAPKNPDLI  171 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~-~r~~~----~~~~~-~~~~~ye~~~~~~~~  171 (272)
                      ++.+....   ....+.+... +   ..|||+++++++.+|+.++..+. .....    +..+. .....|+.  .++++
T Consensus        76 ~~gg~~~~---~~~~~~~l~~-~---~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~--~ad~~  146 (165)
T d2iyva1          76 SLGGGAVT---SPGVRAALAG-H---TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRR--VATMR  146 (165)
T ss_dssp             ECCTTGGG---SHHHHHHHTT-S---CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHH--HCSEE
T ss_pred             cccccccc---cccccccccc-c---ceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHh--hCCEE
Confidence            44443332   2223333332 2   56999999999999985431000 00000    11110 00112332  36799


Q ss_pred             EeCCCCCHHHHHHHHHHHH
Q psy17388        172 LETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       172 Idt~~~~~ee~~~~I~~~L  190 (272)
                      |||++.+++|++++|++.|
T Consensus       147 Idt~~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         147 VDTNRRNPGAVVRHILSRL  165 (165)
T ss_dssp             EECSSSCHHHHHHHHHTTS
T ss_pred             EECCCCCHHHHHHHHHhcC
Confidence            9999999999999998753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.2e-16  Score=125.07  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC--CCHHHHHHHHHHHHHHHHHHHhCC-CeEEEc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA--FSEEDRNENVRRAAECAKMFAECG-FIALCS  100 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~--~~~~~~~~~~~~i~~~~~~~~~~g-~~VI~d  100 (272)
                      .|+|+|+|||||||+|+.|+++|     ++.++|.|...........  +...........+..........+ ..++..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L-----~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLAT   78 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh-----CCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeec
Confidence            58999999999999999999999     5667777765432221110  011111222222222222223333 333333


Q ss_pred             CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc-------cccCCCCCCCcEEEe
Q psy17388        101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-------SQPYEAPKNPDLILE  173 (272)
Q Consensus       101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~-------~~~ye~~~~~~~~Id  173 (272)
                      .... .........+..    ....+++.+++.++..|..++...............+       ...|+  ..++++||
T Consensus        79 ~~~~-~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~~~d~~Id  151 (169)
T d1kaga_          79 GGGS-VKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYE--EIADVTIR  151 (169)
T ss_dssp             CTTG-GGSHHHHHHHHH----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHH--HHCSEEC-
T ss_pred             cchh-hhhhhhhHHhhh----cceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhh--ccCCEEEE
Confidence            2221 112222222222    1267999999999999986542211111000001111       11122  24679999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy17388        174 TVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       174 t~~~~~ee~~~~I~~~L~  191 (272)
                      |++.+++|++++|++.|+
T Consensus       152 t~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         152 TDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             ----CHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            999999999999999874

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=7.3e-16  Score=114.70  Aligned_cols=116  Identities=11%  Similarity=0.149  Sum_probs=90.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-c-CCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA-Q-GIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA   97 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~-g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V   97 (272)
                      ++|..|||+|.+||||||+|++|...|.+ . |.++..+|.|+++                   ++..++..+.++|.. 
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~-------------------ri~fva~e~~k~G~~-   63 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT-------------------ELLSLIQDFIGSGSG-   63 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH-------------------HHHTTHHHHHHTTCE-
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH-------------------HHHHHHHHHHhcCCE-
Confidence            57889999999999999999999999977 3 5778889888543                   344455566666544 


Q ss_pred             EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388         98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV  177 (272)
Q Consensus        98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~  177 (272)
                                                +.|+..+|.|.|.+|..+..|                .|+.|..|+++|||+..
T Consensus        64 --------------------------~iv~~~~p~e~~~~~d~~g~y----------------~~~~~~npDLvIdT~~~  101 (122)
T d1g8fa3          64 --------------------------LIIPDQWEDDKDSVVGKQNVY----------------LLDTSSSADIQLESADE  101 (122)
T ss_dssp             --------------------------EEESSCCCGGGGGGSCCTTEE----------------EEESSTTCSEECSSTTC
T ss_pred             --------------------------EEEecCCcHHHHHhcCCCCeE----------------EecCCCCCCeEEECCCC
Confidence                                      445556677777777644332                25667899999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCC
Q psy17388        178 PVEKCANSVLDMIAAKGLIP  197 (272)
Q Consensus       178 ~~ee~~~~I~~~L~~~~~~~  197 (272)
                      ++++++++|+.+|+++|+|.
T Consensus       102 sVee~V~qII~yLee~GfIk  121 (122)
T d1g8fa3         102 PISHIVQKVVLFLEDNGFFV  121 (122)
T ss_dssp             CHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHHHHHHCcCEe
Confidence            99999999999999999985

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=5e-16  Score=123.31  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=85.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc------CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN------LAFSEEDRNENVRRAAECAKMFAEC   93 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~------~~~~~~~~~~~~~~i~~~~~~~~~~   93 (272)
                      .+++.|+|+|+|||||||+|+.|++++.    ...+++.+.+.......      ..... ........+.+........
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~   77 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKLVKENHFYTEYDTELDTHI-IEEKDEDRLLDFMEPIMVS   77 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHHHHHTTCSCC------CCC-CCHHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC----CCcEEeHHHHHHHHhhhhhHHHhhcccc-hHHHHHHHHHHHHHhhhhh
Confidence            5678999999999999999999999983    24445555443322110      00000 0011222333333444555


Q ss_pred             CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCCCcE
Q psy17388         94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDL  170 (272)
Q Consensus        94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~  170 (272)
                      +..++.+.....         ++.. ...+.+|||+||++++.+|+.+|.....+..+..........|+   ....+++
T Consensus        78 ~~~~~~~~~~~~---------~~~~-~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  147 (174)
T d1y63a_          78 RGNHVVDYHSSE---------LFPE-RWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDI  147 (174)
T ss_dssp             SSEEEEECSCCT---------TSCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGG
T ss_pred             cccccccHHHHH---------HHHH-hcCceEEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhcCCE
Confidence            555555433221         1111 12446799999999999999877432222111001111111111   1113468


Q ss_pred             EEeCCCCCHHHHHHHHHHHHH
Q psy17388        171 ILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       171 ~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      +|++++.+++++.+.|.+.++
T Consensus       148 ~i~~~~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         148 VLVRENDTLEQMAATVEEIRE  168 (174)
T ss_dssp             EEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHH
Confidence            888888899998777665544

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.59  E-value=5.4e-15  Score=120.07  Aligned_cols=168  Identities=17%  Similarity=0.140  Sum_probs=95.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHHHHH--------HHHHH-HHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRNENV--------RRAAE-CAK   88 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~~~~--------~~i~~-~~~   88 (272)
                      ..+|.+|+|.|+|||||||+|+.|++.+     ++.+++.+.+. +........... .....        ..... ...
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~-----g~~~i~~g~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAGDLLRQEQQSGSKDGEM-IATMIKNGEIVPSIVTVKLLKN   76 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCTTHHH-HHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEchhhHHHHHhhhhhhhhhh-hhhHhhhccccchHHHHHHHHH
Confidence            3678999999999999999999999999     56778875543 222111111000 00000        00001 111


Q ss_pred             HHH-hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc-c-------cccc--
Q psy17388         89 MFA-ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI-K-------SFTG--  157 (272)
Q Consensus        89 ~~~-~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~-~-------~~~~--  157 (272)
                      ... .....++.++..........+.........+.++|||+||++++.+|+.++.....+.... +       .+..  
T Consensus        77 ~~~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~  156 (194)
T d1qf9a_          77 AIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQT  156 (194)
T ss_dssp             HHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTH
T ss_pred             HhhhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHH
Confidence            111 2223455554433445555555555555557789999999999999986653221111110 0       0000  


Q ss_pred             --ccccCCCCCCCc-EEEeCCCCCHHHHHHHHHHHHHhCCC
Q psy17388        158 --VSQPYEAPKNPD-LILETVNVPVEKCANSVLDMIAAKGL  195 (272)
Q Consensus       158 --~~~~ye~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~~~~  195 (272)
                        +...|+.  ... ++||+ +.+++++.+.|.+.|+..|+
T Consensus       157 ~~~~~~y~~--~~~~~~Id~-~~~ieeV~~~I~~ii~~~g~  194 (194)
T d1qf9a_         157 KLVIDHYNK--FDKVKIIPA-NRDVNEVYNDVENLFKSMGF  194 (194)
T ss_dssp             HHHHHHHHH--TTCEEEEEC-SSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHh--CCCEEEEEC-CCCHHHHHHHHHHHHHHcCC
Confidence              0111221  223 46674 57999999999999998774

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.8e-14  Score=115.81  Aligned_cols=169  Identities=12%  Similarity=0.075  Sum_probs=94.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc----c----ccccccccCCCCHHHHHHHHH----HHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD----N----LRNGINANLAFSEEDRNENVR----RAAECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D----~----i~~~l~~~~~~~~~~~~~~~~----~i~~~~   87 (272)
                      ++|.+|+|.|++||||||+++.|++.|..+|+++.+++.-    .    ++..+......+.......+.    .....+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i   80 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   80 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhH
Confidence            3688999999999999999999999999999988776421    1    111111222223221111110    012344


Q ss_pred             HHHHhCCCeEEEcCCCCcH---------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388         88 KMFAECGFIALCSFVSPTA---------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV  158 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~---------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~  158 (272)
                      ...+.+|.+||+|......         .....+..+......|.++|||++|++++.+|..++.   .+......+..+
T Consensus        81 ~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~---~~~E~~~~~~r~  157 (209)
T d1nn5a_          81 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH---ERYENGAFQERA  157 (209)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC--------CTTCSHHHHHHH
T ss_pred             HHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccc---cccccHHHHHHH
Confidence            5667789899998532100         0012222222223347899999999999999975431   111111112222


Q ss_pred             cccCCCC--CC--CcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        159 SQPYEAP--KN--PDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       159 ~~~ye~~--~~--~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ...|...  ..  .-++||+ +.+++++.++|...+.+
T Consensus       158 ~~~Y~~l~~~~~~~~~~IDa-~~~~e~V~~~I~~~v~~  194 (209)
T d1nn5a_         158 LRCFHQLMKDTTLNWKMVDA-SKSIEAVHEDIRVLSED  194 (209)
T ss_dssp             HHHHHHHTTCTTSCEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            2333211  11  2367776 46999999988777664

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=7.1e-14  Score=114.93  Aligned_cols=171  Identities=13%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC---c-----cccccccc-----cCCCCHHHHHH-----HHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG---D-----NLRNGINA-----NLAFSEEDRNE-----NVRR   82 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~---D-----~i~~~l~~-----~~~~~~~~~~~-----~~~~   82 (272)
                      +|++|+|.|++||||||+++.|++.|...|+..+.+..   +     .++..+..     +...+.....-     ....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   80 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            57899999999999999999999999988876554321   1     11111111     11122211110     1111


Q ss_pred             HHHHHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhh-hh
Q psy17388         83 AAECAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKA-RE  149 (272)
Q Consensus        83 i~~~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~-r~  149 (272)
                      ........++.|.+||+|...            ........+.........+.++|||++|++++.+|+.+|..... ..
T Consensus        81 ~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~  160 (210)
T d4tmka_          81 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ  160 (210)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred             HHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhhh
Confidence            223345567789899987421            11122222333332234577999999999999999976532110 00


Q ss_pred             ccccccccccccCCCC--CCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        150 GKIKSFTGVSQPYEAP--KNPD-LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       150 ~~~~~~~~~~~~ye~~--~~~~-~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ...+.+..+...|...  ..+. ++||+ +.+++++.+.|.+.+.+
T Consensus       161 ~~~~~~~~v~~~y~~~~~~~~~~~~IDa-~~~~e~v~~~I~~~i~~  205 (210)
T d4tmka_         161 ESFDFFNRTRARYLELAAQDKSIHTIDA-TQPLEAVMDAIRTTVTH  205 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            0111122233334321  1223 67776 57999999999988875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-13  Score=109.74  Aligned_cols=166  Identities=15%  Similarity=0.148  Sum_probs=90.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccc-cCCCCHHH-----------HHHHHHHHHHHH-
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINA-NLAFSEED-----------RNENVRRAAECA-   87 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~-~~~~~~~~-----------~~~~~~~i~~~~-   87 (272)
                      |++|+|.|+|||||||+|+.|++.+     ++.++++.++ |..... ...+....           .......+.... 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~-----g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~   75 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMD   75 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh-----CCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhc
Confidence            7899999999999999999999999     5677776544 322111 01110000           001111111111 


Q ss_pred             HHHH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-cccc-------
Q psy17388         88 KMFA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFTG-------  157 (272)
Q Consensus        88 ~~~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~-------  157 (272)
                      ....  .....++.++..-.......+............+++++++.+++.+|..+|.....|..... .+..       
T Consensus        76 ~~~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~  155 (194)
T d1teva_          76 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQ  155 (194)
T ss_dssp             HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHH
T ss_pred             ccchhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHH
Confidence            1111  12234444433333344444444444444456779999999999999987643322221111 0100       


Q ss_pred             ----ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        158 ----VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       158 ----~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                          +...|... ..-+.||+ +.+++++.+.|.+.|.++|
T Consensus       156 ~~~~l~~~y~~~-~~~~~IDa-~~s~eeV~~~I~~il~k~g  194 (194)
T d1teva_         156 STKPIIDLYEEM-GKVKKIDA-SKSVDEVFDEVVQIFDKEG  194 (194)
T ss_dssp             HHHHHHHHHHHT-TCEEEEET-TSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHhcCC
Confidence                11112111 11246786 5799999999999999876

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.8e-13  Score=110.45  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=87.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC-------CCCHHHHH---HH-HHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL-------AFSEEDRN---EN-VRRAAECAKMF   90 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~-------~~~~~~~~---~~-~~~i~~~~~~~   90 (272)
                      |.+|+|+|+|||||||+|++|++.+...|.++..++.|.++..+....       ........   .. ...+...+..+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999988888999999998876554221       11111111   11 11122223333


Q ss_pred             H-hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388         91 A-ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD  139 (272)
Q Consensus        91 ~-~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl  139 (272)
                      . +.|.+||.|+.++....|..+.++++..+..++.+.+.|+.+.+.++.
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  131 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHh
Confidence            3 456788999999999999999999988888888899999888777665

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.45  E-value=1.3e-13  Score=111.37  Aligned_cols=156  Identities=12%  Similarity=0.119  Sum_probs=84.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-ccc------------CC--CCHHHHHHHHHHHH-
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-NAN------------LA--FSEEDRNENVRRAA-   84 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~~~------------~~--~~~~~~~~~~~~i~-   84 (272)
                      .|+.|+|.|+|||||||+|+.|++++     ++.+++.+.+.+.. ...            .+  .....   ....+. 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~-----~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~   73 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY-----QLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEI---VVNMVKE   73 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH-----CCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHH---HHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH-----CCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCccccee---ehhhhhh
Confidence            57789999999999999999999999     67788876553321 100            00  00000   000111 


Q ss_pred             HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccc----cccc
Q psy17388         85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFT----GVSQ  160 (272)
Q Consensus        85 ~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~----~~~~  160 (272)
                      ............|+.++... ..   ....+......+..+|||++|.+++.+|+..+.....-..+...+.    .+..
T Consensus        74 ~~~~~~~~~~~~vid~~~~~-~~---q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~  149 (189)
T d1zaka1          74 RLRQPDAQENGWLLDGYPRS-YS---QAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLS  149 (189)
T ss_dssp             HHHSHHHHHTCEEEESCCCS-HH---HHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccccCcEEeeccchh-hH---HHhhhhhcccccchheeechhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            11111122233455444332 22   2222222223456789999999999999854421100000111111    1222


Q ss_pred             cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        161 PYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       161 ~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .|+   .-.+.||. +.+++++.++|.+.|..
T Consensus       150 ~y~---~~~~~Id~-~~~idev~~~I~~~l~~  177 (189)
T d1zaka1         150 TYE---NIIVKVQG-DATVDAVFAKIDELLGS  177 (189)
T ss_dssp             TTC---CCEEEEEC-SSCHHHHHHHHHHHHHH
T ss_pred             HhC---CCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence            232   22367775 57999999999888753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.8e-13  Score=108.68  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccC--------------CCCHHHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANL--------------AFSEEDRNENVRRAAECA   87 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~--------------~~~~~~~~~~~~~i~~~~   87 (272)
                      +.|+|.|+|||||||+|+.|++++     ++.+++.+.+... .....              ......   ..   ..+.
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~-----g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~---~~---~~~~   71 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF-----HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI---MV---NMIK   71 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHH---HH---HHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh-----CCceEeccccceeccccCChHHHHHHHHHhhhcccccch---hH---HHHH
Confidence            457788999999999999999999     6778887655332 11100              000000   00   0111


Q ss_pred             HHHHh---CCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccccccccC
Q psy17388         88 KMFAE---CGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFTGVSQPY  162 (272)
Q Consensus        88 ~~~~~---~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~~~y  162 (272)
                      ..+.+   .+..++.++..........+...+...+. +.++|+|+++.+++.+|+..+..-+.|..... ....+...|
T Consensus        72 ~~l~~~~~~~~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~~~~~r~~~y~~~~~~v~~~y  151 (180)
T d1akya1          72 DELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKRLAAYHAQTEPIVDFY  151 (180)
T ss_dssp             HHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHhcCccccCCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccccccchHHHHHHHHHHHHHHH
Confidence            12222   12234445443344455555555544443 56889999999999999865532111111100 001122223


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        163 EAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ... .--+.||. +.+++++.+.|++.|.+
T Consensus       152 ~~~-~~~~~Id~-~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         152 KKT-GIWAGVDA-SQPPATVWADILNKLGK  179 (180)
T ss_dssp             HHH-TCEEEEET-TSCHHHHHHHHHHHHTC
T ss_pred             Hhc-CCEEEEEC-CCCHHHHHHHHHHHHcc
Confidence            221 11256775 46999999999999865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.41  E-value=1.3e-13  Score=109.78  Aligned_cols=163  Identities=10%  Similarity=0.052  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-cccc--------cc-CCCCHHHHHHHHHHHHHHHHHHHh
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGIN--------AN-LAFSEEDRNENVRRAAECAKMFAE   92 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~--------~~-~~~~~~~~~~~~~~i~~~~~~~~~   92 (272)
                      ++|+|+|+|||||||+++.|+++|...+.++..+..+... ....        .. ..................... +.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   80 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAE-MA   80 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHH-HH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHH-Hh
Confidence            5899999999999999999999998888777766543321 1110        00 011111111111111222222 33


Q ss_pred             CCCeEEEcCCCCcH-------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccc---cccc---
Q psy17388         93 CGFIALCSFVSPTA-------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKS---FTGV---  158 (272)
Q Consensus        93 ~g~~VI~d~~~~~~-------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~---~~~~---  158 (272)
                      .+.+++.+......       ..........    .+..+|||+++++++.+|+.++... .+... ...   ....   
T Consensus        81 ~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~  155 (190)
T d1khta_          81 KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL----NPDLIIVVETTGDEILMRRMSDETR-VRDLDTASTIEQHQFMNRC  155 (190)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHH----CCSEEEEEECCHHHHHHHHHTSSSC-SSSCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEECCcccchHHHHHHHhhhhhhhhhc----cccceeeecCCHHHHHHHHHHhccc-cCCcccHHHHHHHHHHHHH
Confidence            45566655322100       0001111111    2557899999999999998654211 11000 000   0001   


Q ss_pred             -cccCCC-CCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        159 -SQPYEA-PKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       159 -~~~ye~-~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                       ...|.. ...+..+|++++.++++++++|++.|+
T Consensus       156 ~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         156 AAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence             111111 123456788888999999999999873

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.37  E-value=2.1e-13  Score=109.08  Aligned_cols=164  Identities=13%  Similarity=0.047  Sum_probs=84.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-ccccccccc---------CCCCHHHHHHHHHHHHH-HHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-NLRNGINAN---------LAFSEEDRNENVRRAAE-CAKMFA   91 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-~i~~~l~~~---------~~~~~~~~~~~~~~i~~-~~~~~~   91 (272)
                      ++|+|+|+|||||||+++.|+++|...|..+..++.+ ..+......         ..+.............. +.....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHHH
Confidence            5899999999999999999999998888887766532 222111100         11111111111111111 111122


Q ss_pred             h-CCCeEEEc--CCCCcH-----HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-cccccc----c
Q psy17388         92 E-CGFIALCS--FVSPTA-----AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFTG----V  158 (272)
Q Consensus        92 ~-~g~~VI~d--~~~~~~-----~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~~----~  158 (272)
                      . ....++++  ......     .....+....    .+..+|||++|++++.+|+.+|... .+... ......    .
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~~~~~~R~~~r~~~-~r~~~~~~~~~~~~~~~  156 (194)
T d1nksa_          82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI----NPSVIFLLEADPKIILSRQKRDTTR-NRNDYSDESVILETINF  156 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHHH----CCSEEEEEECCHHHHHHHHHHCTTT-CCCCCCSHHHHHHHHHH
T ss_pred             HhCCCcEEEEccCchHHHHHHHHhHHHHHHhhh----ccccceEEecCHHHHHHHHHHhhhc-ccccchHHHHHHHHHHH
Confidence            2 22333332  111000     0001111111    2568899999999999998665211 11110 000000    0


Q ss_pred             cccCC----C-CCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        159 SQPYE----A-PKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       159 ~~~ye----~-~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      ...+.    . ...+..+|++++.+++|++++|++.|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         157 ARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             HHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            00000    0 134567889889999999999999874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.35  E-value=1.4e-13  Score=108.48  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +.|+|+|+|||||||+|+.|++++   |  ..+++.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l---~--~~~i~~~~~   38 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS---G--LKYINVGDL   38 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH---C--CcEEechHH
Confidence            458899999999999999999999   4  455665544

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=5.2e-12  Score=102.26  Aligned_cols=163  Identities=16%  Similarity=0.117  Sum_probs=86.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-ccccccc-CCCCHHH-----------HHHHHHHHHH-H
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINAN-LAFSEED-----------RNENVRRAAE-C   86 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~-~~~~~~~-----------~~~~~~~i~~-~   86 (272)
                      +..+|+|.|+|||||||+|+.|++++     ++.+++++++ |...... ......-           .......+.. .
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~-----g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   81 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAI   81 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHH
Confidence            45689999999999999999999999     6788886544 3322110 1110000           0011111111 1


Q ss_pred             HHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-cccc--------
Q psy17388         87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFTG--------  157 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~--------  157 (272)
                      ..........++.++..........+   ......+..+++++++.+++.+|...+.....+..... .+..        
T Consensus        82 ~~~~~~~~~~~vl~g~p~~~~q~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~  158 (196)
T d1ukza_          82 SDNVKANKHKFLIDGFPRKMDQAISF---ERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET  158 (196)
T ss_dssp             HHHHHTTCCEEEEETCCCSHHHHHHH---HHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHT
T ss_pred             HhhhccCCCceeeeccchhHHHHHHH---HHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH
Confidence            12222233344444332222222222   23334466889999999999999866532222211100 0100        


Q ss_pred             ---ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        158 ---VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       158 ---~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                         +...|+. ..-.+.||+ +.+++++.++|.+.|++.
T Consensus       159 ~~~l~~~y~~-~~~~~~Id~-~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         159 SMPVIEYFET-KSKVVRVRC-DRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             THHHHHHHHT-TTCEEEEEC-SSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cCCEEEEEC-CCCHHHHHHHHHHHHHhh
Confidence               1111221 111256776 469999999999998763

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=3.1e-12  Score=104.24  Aligned_cols=163  Identities=12%  Similarity=0.086  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc--------cccccCCCCHH---HHHHH-H-H-H--HHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN--------GINANLAFSEE---DRNEN-V-R-R--AAEC   86 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~--------~l~~~~~~~~~---~~~~~-~-~-~--i~~~   86 (272)
                      ++|+|.|..||||||+++.|++.|..+|+++.++..-....        ...........   ..... + . .  ....
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT   80 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHHTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCccchhhhhhhccccccccccchHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999998999887764321110        00001000000   00010 0 0 0  0122


Q ss_pred             HHHHHhCCCeEEEcCCCCc--------------HHHHHHHHHHH---HhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh
Q psy17388         87 AKMFAECGFIALCSFVSPT--------------AAARDRAREIH---RNANLEFFEVFVNTPVEICEQRDVKGHYKKARE  149 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~--------------~~~r~~~~~~~---~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~  149 (272)
                      .......+.+||+|.....              ......+..+.   .....|.++|||++|++++.+|+.+|.......
T Consensus        81 ~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~  160 (208)
T d1gsia_          81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGR  160 (208)
T ss_dssp             HHHHHHHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhhhcccccc
Confidence            3334556778888843110              01111111111   112346789999999999999998774332211


Q ss_pred             cc--cc----ccccccccCCC----C-CCCcEEEeCCCCCHHHHHHHH
Q psy17388        150 GK--IK----SFTGVSQPYEA----P-KNPDLILETVNVPVEKCANSV  186 (272)
Q Consensus       150 ~~--~~----~~~~~~~~ye~----~-~~~~~~Idt~~~~~ee~~~~I  186 (272)
                      ..  .+    .+..+.+.|..    . ..+-++||. +.++++++++|
T Consensus       161 ~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa-~~~~e~V~~~i  207 (208)
T d1gsia_         161 ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGA-DVDPGRLAATL  207 (208)
T ss_dssp             CCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECT-TCCHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeC-CCCHHHHHHhh
Confidence            10  00    01112222322    1 123356674 67999999886

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.33  E-value=2.7e-12  Score=103.45  Aligned_cols=162  Identities=9%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-cccccccc------------CCCCHHHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINAN------------LAFSEEDRNENVRRAAECA   87 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~------------~~~~~~~~~~~~~~i~~~~   87 (272)
                      ++.-|+|.|+|||||||+|+.|++++     ++.+++.++ +++....+            .+.... .......+....
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~-----g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~-~~~v~~~~~~~l   75 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS-DEMVLELIEKNL   75 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC-HHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHHHHHHHhccCcccchhhhhhccCCccc-cceeeeeehhhh
Confidence            45567788999999999999999999     677888644 44321110            000000 011111111111


Q ss_pred             HHHHhCCCeEEEcCCCCcHHHHHHHHHHH-HhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-----ccccccc----
Q psy17388         88 KMFAECGFIALCSFVSPTAAARDRAREIH-RNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-----KIKSFTG----  157 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~~~r~~~~~~~-~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-----~~~~~~~----  157 (272)
                      ......+..|+.++.... .....+.... .......+.++++++.+++.+|+..|........     +...+..    
T Consensus        76 ~~~~~~~g~ii~g~pr~~-~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p  154 (190)
T d1ak2a1          76 ETPPCKNGFLLDGFPRTV-RQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTP  154 (190)
T ss_dssp             TSGGGTTCEEEESCCCSH-HHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCceeecccccch-hHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHH
Confidence            111223335665555443 2333333332 2233466889999999999999976531110000     0011100    


Q ss_pred             ccccCCCCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        158 VSQPYEAPKNPD-LILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       158 ~~~~ye~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      +...|..  ... ..||++ .+++|+.++|++.|.+
T Consensus       155 ~~~~y~~--~~~~~~Id~~-~s~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         155 LVEYYSK--RGIHSAIDAS-QTPDVVFASILAAFSK  187 (190)
T ss_dssp             HHHHHHH--TTCEEEEETT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--cCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence            1111221  122 567864 6999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=3.2e-12  Score=102.23  Aligned_cols=159  Identities=11%  Similarity=0.084  Sum_probs=84.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHHHHH--------HHHHHHHHHH---
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRNENV--------RRAAECAKMF---   90 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~---   90 (272)
                      +.|+|.|+|||||||+|+.|++.+     ++.+++.+++. +............ ...+        .....+....   
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~-----g~~~i~~~~l~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~l~~~~~~   74 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL-----GIPQISTGELFRRNIEEGTKLGVEA-KRYLDAGDLVPSDLTNELVDDRLNN   74 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-----CCceEchHHHHHHHHhhhhhhHHHH-HHHHHhhhhhhhHHHHHHHHHHhhC
Confidence            468999999999999999999999     56667765543 2111100000000 0000        0011111111   


Q ss_pred             HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhh----cccccccc----cccc
Q psy17388         91 AECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKARE----GKIKSFTG----VSQP  161 (272)
Q Consensus        91 ~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~----~~~~~~~~----~~~~  161 (272)
                      ......++.++..........+.......+. +.++++++++.+++.+|+..|.......    .+...+..    +...
T Consensus        75 ~~~~~~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~  154 (181)
T d2cdna1          75 PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEY  154 (181)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred             ccccccEEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            1223345555444434444555444444433 4578999999999999997552110000    00001100    1111


Q ss_pred             CCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388        162 YEAPKNPDLILETVNVPVEKCANSVLDMIA  191 (272)
Q Consensus       162 ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~  191 (272)
                      |.   .-.+.||. +.+++|+.++|++.|.
T Consensus       155 y~---~~~~~Id~-~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         155 YR---DQLKTVDA-VGTMDEVFARALRALG  180 (181)
T ss_dssp             TT---TTEEEEEC-CSCHHHHHHHHHHHTT
T ss_pred             Hh---cCeEEEEC-CCCHHHHHHHHHHHhC
Confidence            22   22467776 5699999999998874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.8e-12  Score=101.60  Aligned_cols=158  Identities=11%  Similarity=0.102  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHH-----------HHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDR-----------NENVRRAAECAKMF   90 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~-----------~~~~~~i~~~~~~~   90 (272)
                      +.|+|.|+|||||||+|+.|++++     ++.+++.+.+. +...........-.           ......+.......
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~-----~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~   75 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKY-----GIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE   75 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh-----CCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccc
Confidence            468899999999999999999999     56677765443 22211111110000           00011111111101


Q ss_pred             HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc----ccccCCC--
Q psy17388         91 AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG----VSQPYEA--  164 (272)
Q Consensus        91 ~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~----~~~~ye~--  164 (272)
                      ......++..+... ...   ...+......+.++|||+||++++.+|+.+|.....-..++..+..    +...|..  
T Consensus        76 ~~~~g~i~~g~pr~-~~~---~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e~i~~r~~~y~~~~~~v~~~y~~~~  151 (179)
T d1e4va1          76 DCRNGFLLDGFPRT-IPQ---ADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEA  151 (179)
T ss_dssp             GGGGCEEEESCCCS-HHH---HHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ccccceeecccccc-hHH---hhhhhhccCCceEEEEeccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            11122444444332 222   2222222223567899999999999998665211110011111100    1122221  


Q ss_pred             --CCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        165 --PKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       165 --~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                        ....-+.||. +.+++++.++|.+.|
T Consensus       152 ~~~~~~~~~IDa-~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         152 EAGNTKYAKVDG-TKPVAEVRADLEKIL  178 (179)
T ss_dssp             HHTSCEEEEEET-TSCHHHHHHHHHHHH
T ss_pred             cccCCcEEEEEC-CCCHHHHHHHHHHHh
Confidence              1112357775 579999999998875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=2.7e-11  Score=99.78  Aligned_cols=168  Identities=13%  Similarity=0.046  Sum_probs=82.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc---c-----ccccccc-cCCCCHHHHHHHH--HH--HHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD---N-----LRNGINA-NLAFSEEDRNENV--RR--AAEC   86 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D---~-----i~~~l~~-~~~~~~~~~~~~~--~~--i~~~   86 (272)
                      .+|++|+|.|+.||||||+++.|++.|..+   ...+...   .     ++..+.. ...+++....-.+  .+  ....
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~---~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~   77 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPN---CKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK   77 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTS---EEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhC---CEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999533   3333211   0     1111111 1122222111110  00  1122


Q ss_pred             HHHHHhCCCeEEEcCCCCcH-----------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388         87 AKMFAECGFIALCSFVSPTA-----------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSF  155 (272)
Q Consensus        87 ~~~~~~~g~~VI~d~~~~~~-----------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~  155 (272)
                      +...+..|.+||+|......           ....++..+......|.++|||++++++..+|...+...  +......+
T Consensus        78 i~~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~--~~e~~~~~  155 (214)
T d1tmka_          78 IKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE--RYETVKFQ  155 (214)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSS--TTCCHHHH
T ss_pred             HHHHHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchh--hhhhHHHH
Confidence            33445678899998432100           011222222222335779999999999888886433110  00011111


Q ss_pred             ccccccCC--------CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        156 TGVSQPYE--------APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       156 ~~~~~~ye--------~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      ..++..|.        .....-++||+++.+++++.+.|.+.+++
T Consensus       156 ~~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~  200 (214)
T d1tmka_         156 EKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP  200 (214)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            22333332        11122367888788999999988887764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.26  E-value=1.5e-11  Score=98.36  Aligned_cols=162  Identities=10%  Similarity=0.104  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH--------HHHHH-HHHHH-
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR--------RAAEC-AKMFA-   91 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~--------~i~~~-~~~~~-   91 (272)
                      +.|+|.|+|||||||+|+.|++++     ++.+++.+.+ +............- ...+.        ..... ...+. 
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~-----g~~~is~gdllr~~~~~~~~~g~~i-~~~~~~g~~~~d~~~~~~~~~~~~~   74 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKY-----GTPHISTGDMFRAAIQEGTELGVKA-KSFMDQGALVPDEVTIGIVRERLSK   74 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHTCHHHHHH-HHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-----CCceeeHHHHHHHhhhcCCchHHHH-HHHHHcCCcccCcchhHHHHHhhcc
Confidence            468999999999999999999999     5666775443 33221110000000 00000        00011 11111 


Q ss_pred             -h-CCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccc----cccccCCC
Q psy17388         92 -E-CGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFT----GVSQPYEA  164 (272)
Q Consensus        92 -~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~----~~~~~ye~  164 (272)
                       . ....|+..+.. .......+.......+ ...+.++++++.+.+.+|+..+.....-..++..+.    .+...|..
T Consensus        75 ~~~~~~~vl~g~p~-~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~~e~i~~R~~~y~~~~~~i~~~y~~  153 (182)
T d1s3ga1          75 SDCDNGFLLDGFPR-TVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDS  153 (182)
T ss_dssp             STTSSCEEEESCCC-SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccceeeecccc-chhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1 12244444333 3333344444444443 346778999999999999743311000000111111    01122332


Q ss_pred             CCCCc-EEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388        165 PKNPD-LILETVNVPVEKCANSVLDMIAAKG  194 (272)
Q Consensus       165 ~~~~~-~~Idt~~~~~ee~~~~I~~~L~~~~  194 (272)
                        ... +.||. +.+++++.+.|.+.|+..|
T Consensus       154 --~~~~~~Id~-~~~~eeV~~~I~~il~~~g  181 (182)
T d1s3ga1         154 --KEVLVNING-QKDIKDVFKDLDVILQGNG  181 (182)
T ss_dssp             --TTCEEEEEC-SSCHHHHHHHHHHHHTCCC
T ss_pred             --cCCEEEEEC-CCCHHHHHHHHHHHHHhcC
Confidence              223 46774 6799999999999998765

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.25  E-value=7.8e-12  Score=99.59  Aligned_cols=160  Identities=11%  Similarity=0.110  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccC-------------CCCHHHHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANL-------------AFSEEDRNENVRRAAECAK   88 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~-------------~~~~~~~~~~~~~i~~~~~   88 (272)
                      +.|+|.|+|||||||+|+.|++++     ++.+++.+++... .....             .+.+..  .....+.+...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~-----~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~   73 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAY-----GIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE--VTIGIVRERLS   73 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHH--HHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH-----CCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccc--hHHHHHHHHhh
Confidence            358999999999999999999999     5667776654321 11000             000000  00111111111


Q ss_pred             HHHhCCCeEEEcCCCCcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccc----ccccccCC
Q psy17388         89 MFAECGFIALCSFVSPTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSF----TGVSQPYE  163 (272)
Q Consensus        89 ~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~----~~~~~~ye  163 (272)
                      ........++.++..... ....+....... ....+.++|+++.+.+.+|+..+.....-..++..+    ..+.+.|.
T Consensus        74 ~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~e~~~~Rl~~y~~~~~~l~~~y~  152 (182)
T d1zina1          74 KDDCQNGFLLDGFPRTVA-QAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYE  152 (182)
T ss_dssp             SGGGTTCEEEESCCCSHH-HHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             chhhhcCcccccccchhH-HHHHHHHhhhccCCceeeeeccccccchhhhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            111123355555544422 222222233222 235578999999999999986542111000011100    01112222


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        164 APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       164 ~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .. .--+.||+ +.+++++.++|.+.|..
T Consensus       153 ~~-~~~~~Id~-~~~~eeV~~~I~~~L~~  179 (182)
T d1zina1         153 QK-GYLRNING-EQDMEKVFADIRELLGG  179 (182)
T ss_dssp             HH-TCEEEEEC-SSCHHHHHHHHHHHHHH
T ss_pred             hc-CCEEEEEC-CCCHHHHHHHHHHHHHh
Confidence            11 11256786 46999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.24  E-value=2.9e-11  Score=97.69  Aligned_cols=161  Identities=12%  Similarity=0.053  Sum_probs=88.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccC-------------CCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANL-------------AFSEEDRNENVRRAAE   85 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~-------------~~~~~~~~~~~~~i~~   85 (272)
                      .++.+|+|.|+|||||||+|+.|++++     ++.+++.+++.+ ......             .+.+.  ......+..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~-----g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   78 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL--ETVLDMLRD   78 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT-----CCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCH--HHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCch--heeeeehhh
Confidence            467899999999999999999999998     677888765433 221110             00100  011111111


Q ss_pred             HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-c----cc---
Q psy17388         86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-F----TG---  157 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~----~~---  157 (272)
                      ...........+|.++.--.......+   ......+...+++.++.+++.+|...+.....|...... +    ..   
T Consensus        79 ~l~~~~~~~~g~ildg~pr~~~qa~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~  155 (194)
T d3adka_          79 AMVAKVDTSKGFLIDGYPREVKQGEEF---ERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYK  155 (194)
T ss_dssp             HHHTTTTTCSCEEEESCCSSHHHHHHH---HHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHH
T ss_pred             hhhhcccccccceeeeccchhHHHHHH---HHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHH
Confidence            111111112234444332222333333   233344668899999999999998766443333322111 0    00   


Q ss_pred             ----ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        158 ----VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       158 ----~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                          +...|+.. ..-+.||++ .+++++.+.|.+.|..
T Consensus       156 ~~~~~~~~y~~~-~~~~~Id~~-~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         156 ATEPVIAFYEKR-GIVRKVNAE-GSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HTHHHHHHHTTT-TCEEEEECC-SCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc-CCEEEEECC-CCHHHHHHHHHHHHHh
Confidence                11123321 112567864 6999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.23  E-value=1.5e-11  Score=99.36  Aligned_cols=159  Identities=16%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHH----------HHHHHHH-HHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDR----------NENVRRA-AECA   87 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~----------~~~~~~i-~~~~   87 (272)
                      .+.+-|+|.|+|||||||+|+.|++++     ++.+++.+++ ++.+...........          .+....+ .+..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~-----g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~   78 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF-----ELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHEL   78 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB-----CCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhh
Confidence            455678888999999999999999998     6778887554 332211100000000          0111111 1111


Q ss_pred             HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh-hhhcccc-ccccccccCCCC
Q psy17388         88 KMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK-AREGKIK-SFTGVSQPYEAP  165 (272)
Q Consensus        88 ~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~-~r~~~~~-~~~~~~~~ye~~  165 (272)
                      .. ......|+..+... ......    +.+.-....+|+|+||.+++.+|+..+...- .|-.... ....+...|.. 
T Consensus        79 ~~-~~~~~~ildGfPr~-~~q~~~----l~~~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~-  151 (189)
T d2ak3a1          79 KN-LTQYNWLLDGFPRT-LPQAEA----LDRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYRK-  151 (189)
T ss_dssp             HH-HTTSCEEEESCCCS-HHHHHH----HHTTCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hh-hhhcCcccccccch-hhHHHH----hhhcCcceEEEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            11 22233444333332 222222    2222224578999999999999997652110 1100000 00011222322 


Q ss_pred             CCCc-EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        166 KNPD-LILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       166 ~~~~-~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                       ... +.||.  .+++++.++|.+.|..+
T Consensus       152 -~~~l~~idg--~~~~eV~~~I~~~i~~~  177 (189)
T d2ak3a1         152 -KGVLETFSG--TETNKIWPHVYAFLQTK  177 (189)
T ss_dssp             -HTCEEEEEC--SSHHHHHHHHHHHHHTT
T ss_pred             -cCCEEEECC--CChHHHHHHHHHHHHHH
Confidence             122 34554  36899999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.20  E-value=1.3e-10  Score=95.23  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +++.+|.|.|+|||||||+|+.|++.|     ++.++++..+
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~l-----g~~~istGdl   37 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAM   37 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh-----CCcEECHHHH
Confidence            456789999999999999999999999     6788886443

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.4e-10  Score=94.75  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=34.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-----CCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQG-----IPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-----~~~~~ld~D~i~~   63 (272)
                      .|.+|.|+|++||||||+|++|++.|+..+     ..+.++..|.+..
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~   48 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   48 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccccc
Confidence            478999999999999999999999985432     2467788887653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.01  E-value=1.4e-09  Score=91.21  Aligned_cols=122  Identities=13%  Similarity=0.070  Sum_probs=78.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC--------CCCHHHHHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL--------AFSEEDRNENVRRAAECAKM   89 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~--------~~~~~~~~~~~~~i~~~~~~   89 (272)
                      ....|..|+|.|+|||||||+|++|+..+   +.++..++.|.++.......        ......+.............
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISR  104 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh---hcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHH
Confidence            34578899999999999999999999998   66888999998876443110        01111111111111112223


Q ss_pred             HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388         90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG  142 (272)
Q Consensus        90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r  142 (272)
                      ....+...+.+...........+...+...|..+...+++++.++...|...|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         105 LSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHhhCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcC
Confidence            33444455555544433555555566777788888889999999999887655

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=3e-10  Score=91.16  Aligned_cols=150  Identities=16%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----------c----cCC----------CCHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----------A----NLA----------FSEED   75 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----------~----~~~----------~~~~~   75 (272)
                      .|++|.|+|.+||||||+|+.|.+ +   |++  +++.|.+...+.           .    +..          |....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~-~---g~~--~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~   75 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS-W---GYP--VLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPE   75 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH-T---TCC--EEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-C---CCe--EEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCch
Confidence            588999999999999999999965 4   544  456555432211           0    000          11111


Q ss_pred             HHHHHHHH------HHHHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhhh
Q psy17388         76 RNENVRRA------AECAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKKA  147 (272)
Q Consensus        76 ~~~~~~~i------~~~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~~  147 (272)
                      ....+...      ..+...... ....++.+....+..   .+   ...   ...+||++||.+++.+|+.+|. +.. 
T Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~---~~---~~~---~d~vI~v~a~~e~r~~Rl~~R~~~~~-  145 (191)
T d1uf9a_          76 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEK---GW---EGR---LHGTLLVAAPLEERVRRVMARSGLSR-  145 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTT---TC---GGG---SSEEEEECCCHHHHHHHHHTTTCCTT-
T ss_pred             hhhhhhhhhhHHHHHHHHhhhhhcccceEEEEeeccccc---cc---ccc---ceeEEEEecchhhHHHHHHhcccchH-
Confidence            11111111      011112222 234555554322110   11   111   2367999999999999986651 110 


Q ss_pred             hhcccccccc-ccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        148 REGKIKSFTG-VSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       148 r~~~~~~~~~-~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                           ..+.. ...+..   .-..++++|+++ .++++...+|.+.+.+
T Consensus       146 -----~~~~~~~~~q~~~~~~~~~aD~vI~N~-~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         146 -----EEVLARERAQMPEEEKRKRATWVLENT-GSLEDLERALKAVLAE  188 (191)
T ss_dssp             -----HHHHHHHTTSCCHHHHHHHCSEEECCS-SHHHHHHHHHHHHHHS
T ss_pred             -----HHHHHHHHhCCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence                 00100 111110   012468999875 4888888888877754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.6e-10  Score=92.31  Aligned_cols=27  Identities=15%  Similarity=0.074  Sum_probs=24.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +.++|+|.|+.||||||+++.|++.|.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457999999999999999999999984

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=2.1e-09  Score=85.61  Aligned_cols=155  Identities=12%  Similarity=0.099  Sum_probs=76.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---ccccc--CCCCHHHHHHHHHH--------------
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GINAN--LAFSEEDRNENVRR--------------   82 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~~~--~~~~~~~~~~~~~~--------------   82 (272)
                      |.+|+|+|||||||||+++.|.+.++    .+.+.-...-|.   +-..+  .-|...........              
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~----~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~   77 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGL   77 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC----CCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCc
Confidence            57999999999999999999998874    122211111111   11001  11111111000000              


Q ss_pred             -----HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cc
Q psy17388         83 -----AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FT  156 (272)
Q Consensus        83 -----i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~  156 (272)
                           ...........|..++++.. .  .....++..   ..-++.++++.+|.+++.+|+.+|.....  ..+.. +.
T Consensus        78 ~~~g~~~~~~~~~~~~g~~~i~~~~-~--~g~~~l~~~---~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~--e~I~~Rl~  149 (182)
T d1znwa1          78 HRSGTLAQPVRAAAATGVPVLIEVD-L--AGARAIKKT---MPEAVTVFLAPPSWQDLQARLIGRGTETA--DVIQRRLD  149 (182)
T ss_dssp             EEEEEEHHHHHHHHHHTCCEEEECC-H--HHHHHHHHH---CTTSEEEEEECSCHHHHHHHHHTTSCSCH--HHHHHHHH
T ss_pred             cccccccchhhhhhhcCCccccccc-c--chhhhhhhc---CcceeEEeeecccHHHHHHHhhhcCcchH--HHHHHHHH
Confidence                 01223344556666666532 1  222333332   23355555556789999999977632100  00100 00


Q ss_pred             cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388        157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMI  190 (272)
Q Consensus       157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L  190 (272)
                      ............+.+|.++  +++++++++.+.|
T Consensus       150 ~~~~e~~~~~~fD~vI~Nd--dle~a~~~l~~iI  181 (182)
T d1znwa1         150 TARIELAAQGDFDKVVVNR--RLESACAELVSLL  181 (182)
T ss_dssp             HHHHHHHGGGGSSEEEECS--SHHHHHHHHHHHH
T ss_pred             HHHHHHhhHhcCCEEEECc--CHHHHHHHHHHHh
Confidence            0000001112346777754  7999999998765

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=4.8e-10  Score=90.20  Aligned_cols=30  Identities=33%  Similarity=0.473  Sum_probs=27.2

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+.+|.+|+|.|.+||||||+++.|++.+.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999999999883

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.5e-09  Score=88.53  Aligned_cols=26  Identities=15%  Similarity=0.073  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |++|+|.|..||||||+++.|++.|.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            78999999999999999999999984

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=4.5e-09  Score=85.65  Aligned_cols=158  Identities=11%  Similarity=0.031  Sum_probs=83.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec---Cccccccccc--cCCCCHHHHHHHHHHH------------
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD---GDNLRNGINA--NLAFSEEDRNENVRRA------------   83 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld---~D~i~~~l~~--~~~~~~~~~~~~~~~i------------   83 (272)
                      +|++|+|+|||||||||+.+.|.+..+..  ...+.-   +...|.+-..  ++-|-.  ..+.-+.+            
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~--~~~~~is~TTR~~R~~E~~G~dY~Fvs--~~~F~~~i~~g~flE~~~~~   76 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLY--DTQVSVSHTTRQPRPGEVHGEHYFFVN--HDEFKEMISRDAFLEHAEVF   76 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTT--TEEECCCEECSCCCTTCCBTTTBEECC--HHHHHHHHHTTCEEEEEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCcc--CceEEEEEeccCCCccccccccceeec--HHHHHHHhhhhhheeEEEEC
Confidence            47899999999999999999999886311  222111   1111111111  111211  11111111            


Q ss_pred             -------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-cc
Q psy17388         84 -------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SF  155 (272)
Q Consensus        84 -------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~  155 (272)
                             .......++.|.+||++. .+  .....++..   .+-++.++++..+.+++.+|+.+|......  .+. .+
T Consensus        77 g~~YGt~~~~v~~~~~~g~~~ildi-d~--~g~~~lk~~---~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~--~i~~Rl  148 (205)
T d1s96a_          77 GNYYGTSREAIEQVLATGVDVFLDI-DW--QGAQQIRQK---MPHARSIFILPPSKIELDRRLRGRGQDSEE--VIAKRM  148 (205)
T ss_dssp             TEEEEEEHHHHHHHHTTTCEEEEEC-CH--HHHHHHHHH---CTTCEEEEEECSSHHHHHHHHHTTSCSCHH--HHHHHH
T ss_pred             CceeccccchHHHHHhcCCceeecC-cH--HHHHHHHhh---hcccceeeeeccchHHHHHHHHhcCCchHH--HHHHHH
Confidence                   133455678898888773 22  223333333   333555566777899999999776321100  000 00


Q ss_pred             ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388        156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA  192 (272)
Q Consensus       156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~  192 (272)
                      .............+.+|.++  ++++++++|.+.|..
T Consensus       149 ~~a~~E~~~~~~fD~vIvNd--dl~~a~~el~~iI~~  183 (205)
T d1s96a_         149 AQAVAEMSHYAEYDYLIVND--DFDTALTDLKTIIRA  183 (205)
T ss_dssp             HHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEECc--CHHHHHHHHHHHHHH
Confidence            00000011112346777764  799999999999864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=2.6e-09  Score=87.14  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.|+|.+||||||+|+.|.+ +     ++.++|.|.+.+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~-~-----G~~vidaD~i~~   38 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD-L-----GINVIDADIIAR   38 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH-C-----CCcEEEchHHHH
Confidence            4889999999999999999874 4     456678776644

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.86  E-value=1.5e-09  Score=88.28  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+|.|+|.+||||||+|+.|.+ +   |  +.++|.|.+.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~~-~---G--~~vidaD~i~~   37 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADVVAR   37 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-C---C--CeEEEchHHHH
Confidence            5789999999999999998874 4   4  45577776543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2.3e-08  Score=80.22  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |+|+|||||||||+++.|.+.++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            88999999999999999999984

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=8.8e-09  Score=83.68  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|+|.|||||||||+|+.|++++     ++.++++.++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~-----gl~~iStGdL   37 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAI   37 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh-----CCcEECHHHH
Confidence            389999999999999999999999     7888885433

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=9.9e-09  Score=82.03  Aligned_cols=160  Identities=14%  Similarity=0.170  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccccccccc--cCCC-CHHHHHHHHHH----------------H
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINA--NLAF-SEEDRNENVRR----------------A   83 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i~~~l~~--~~~~-~~~~~~~~~~~----------------i   83 (272)
                      .|+|+|+|||||||+++.|.+.++.. ...+.+. +-..+.+-..  +.-| +.+........                .
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~T-TR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST-TRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEE-CSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcceeEEEeec-cCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            38999999999999999999987421 0011111 1111111000  1111 11110000000                0


Q ss_pred             HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh--hhhcccccc-ccccc
Q psy17388         84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK--AREGKIKSF-TGVSQ  160 (272)
Q Consensus        84 ~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~--~r~~~~~~~-~~~~~  160 (272)
                      ..........|.++|++. .+  .....++.....  -++.++++..+.+++.+|+.+|....  .-...+... ..+..
T Consensus        82 ~~~i~~~~~~g~~~i~~~-~~--~~~~~lk~~~~~--~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~  156 (186)
T d1gkya_          82 VASVKQVSKSGKTCILDI-DM--QGVKSVKAIPEL--NARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAY  156 (186)
T ss_dssp             HHHHHHHHHHTSEEEEEC-CH--HHHHHHHTCGGG--CCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhcCCCeEEecc-hH--HHHHHHHHhhcc--cceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh
Confidence            123344556777777763 22  333333332221  24566778889999999997663210  000000000 00111


Q ss_pred             cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        161 PYEAPKNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       161 ~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      .  .....+++|.++  ++++++++|.+.|...
T Consensus       157 ~--~~~~fd~vI~N~--dle~a~~~l~~iI~~e  185 (186)
T d1gkya_         157 A--ETGAHDKVIVND--DLDKAYKELKDFIFAE  185 (186)
T ss_dssp             H--TTTCSSEEEECS--SHHHHHHHHHHHHHTC
T ss_pred             h--hhcCCCEEEECc--CHHHHHHHHHHHHHhc
Confidence            1  112346777654  7999999999988653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=2.4e-07  Score=72.14  Aligned_cols=35  Identities=9%  Similarity=-0.006  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .-.+.|+|+|+|||||||+|++|++++     +..++..+
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~-----~~~~i~~~   39 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVF-----NTTSAWEY   39 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHT-----TCEEECCT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHh-----CCCeEeee
Confidence            346789999999999999999999999     45555544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.57  E-value=3.6e-08  Score=78.21  Aligned_cols=46  Identities=28%  Similarity=0.358  Sum_probs=38.9

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +.+..|.+|.|+|++||||||+|+.|++.+...+..+..++.|.+.
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~   62 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceeccccccc
Confidence            3445678899999999999999999999998888888888776654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=5.3e-08  Score=83.83  Aligned_cols=44  Identities=11%  Similarity=0.153  Sum_probs=37.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~~   63 (272)
                      ..|.+|.|+|++||||||+|+.|++.|..  .+.++..+..|.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            56899999999999999999999999853  256788889888854

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.50  E-value=2e-08  Score=85.45  Aligned_cols=43  Identities=21%  Similarity=0.480  Sum_probs=35.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      +..+|.|+|.+||||||++++|++.+...|.++..+..|.+..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            4459999999999999999999999988888989999998864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=6.6e-08  Score=74.82  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      +|+|+|++||||||+++.|.+.|..+|..+.++..|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            899999999999999999999999999988888777543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.5e-06  Score=67.22  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++|+|+||+||||||+.+.|.+..+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            5799999999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.30  E-value=6.3e-07  Score=77.53  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      ..|+|.|+.||||||+++.|++.+..  .++.++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~--~~v~~~   36 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSR--DDIVYV   36 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC------CCEEEE
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCC--CCeEEe
Confidence            45999999999999999999998853  244444

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.28  E-value=6.4e-07  Score=77.71  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      +...|+|.|+.||||||+++.|++.+...+ .+.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~-~v~~~   39 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGS-PTLYF   39 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSS-CEEEE
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCC-CeEEE
Confidence            346799999999999999999999985433 44444

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=5.9e-06  Score=66.83  Aligned_cols=46  Identities=28%  Similarity=0.481  Sum_probs=41.3

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .+.+|.+|+|.|++||||||.+..||.++...|.++..+..|.+|.
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   50 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA   50 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4567899999999999999999999999988888999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.26  E-value=2.4e-07  Score=80.38  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ..|+|.|..||||||+++.|++.+..+|.++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            46999999999999999999999876666666665

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.18  E-value=1.5e-05  Score=64.24  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=39.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..+.+|+|.|++|+||||.+..||.++..+|.++.++..|.+|.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   51 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP   51 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            35678999999999999999999999998999999999998875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.17  E-value=9.7e-07  Score=68.40  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++|.|+|.+||||||++..|..+|..+|+.+..+..|.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            47899999999999999999999999999988876553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=1.2e-06  Score=71.30  Aligned_cols=47  Identities=17%  Similarity=0.354  Sum_probs=42.0

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..+.+|.+|+|+|++|+||||....||.++..+|.++.++..|.+|-
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~   52 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA   52 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccccc
Confidence            45578999999999999999999999999988899999999998775

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=2.6e-06  Score=69.08  Aligned_cols=45  Identities=16%  Similarity=0.328  Sum_probs=36.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..+|.+|+|.|++|+||||.+..||.++..+|.++.++..|.+|-
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~   53 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRP   53 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecccc
Confidence            357899999999999999999999999988899999999998875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.06  E-value=5.4e-05  Score=58.29  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      -|+|+|++||||||+++.++..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4899999999999999999999964

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-06  Score=66.83  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +.|+|+|+||+||||+++++++.+...|..+..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            46999999999999999999999987776654443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=3.4e-06  Score=68.12  Aligned_cols=45  Identities=24%  Similarity=0.392  Sum_probs=40.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG   64 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~   64 (272)
                      .+|.+|+|+|++||||||.+..|+.++..+|.++.++..|.+|.+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g   48 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA   48 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccccc
Confidence            467899999999999999999999999888899999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=3.3e-06  Score=71.49  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEecCccccc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ---GIPAYALDGDNLRN   63 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~---g~~~~~ld~D~i~~   63 (272)
                      .+.+|.+|.|+|++||||||+|..|.+.|.++   ...+..++.|.+..
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~   71 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   71 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence            45678999999999999999999998887542   34577788888754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=4.1e-06  Score=68.44  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ..+..++|.||||+||||+|++|++.+   +.++..++.
T Consensus        33 ~~~~~~L~~GPpGtGKT~lA~~la~~~---~~~~~~~~~   68 (238)
T d1in4a2          33 EVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSG   68 (238)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHhcc---CCCcccccC
Confidence            344568899999999999999999998   666666554

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.94  E-value=1.7e-05  Score=65.64  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ++.-|+|.|+||+|||++|++|++.+   |.+++.++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~   73 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS   73 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhcc---ccccccccc
Confidence            45679999999999999999999998   677776654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=7.1e-06  Score=68.43  Aligned_cols=41  Identities=22%  Similarity=0.406  Sum_probs=35.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      ..|+-|+|.|+||+|||++|+++++.+   |.+++.++...+..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~---~~~~~~i~~~~l~~   83 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE   83 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTT
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHc---CCCEEEEEhHHhhh
Confidence            456789999999999999999999998   78888888776654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.85  E-value=7.5e-06  Score=66.93  Aligned_cols=36  Identities=31%  Similarity=0.389  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+..++|.||||+||||+|+.+++.+   ++++..++.-
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~---~~~~~~~~~~   69 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP   69 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHH---TCCEEEEETT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh---CCCeEeccCC
Confidence            45678899999999999999999998   6676666543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=7.8e-06  Score=67.16  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +...++|.|+||+||||+|++|++.+   +.++..++....
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~---~~~~~~~~~~~~   88 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDV   88 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH---Hhhhhccccccc
Confidence            44689999999999999999999998   666666665443

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.81  E-value=3.9e-06  Score=68.76  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-Cccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~   63 (272)
                      .+|.|+|.+||||||+|+.|++.+     ++.++| .|.+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~-----g~~~i~~aD~i~~   38 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY-----SAVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS-----CEEECCTTHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC-----CCeEEcccHHHHH
Confidence            589999999999999999999887     677888 565544

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=1.1e-05  Score=69.03  Aligned_cols=38  Identities=21%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      +|..|+|.||||+|||.+|++|++.+   +.++..++.-.+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~---~~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc---ccchhccccccc
Confidence            56778899999999999999999998   567777776554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=1.2e-05  Score=66.54  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ..|+-|+|.|+||+|||++|+++++.+   |++++.++...+.
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~   79 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFV   79 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHH
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHc---CCCEEEEEhHHhh
Confidence            346679999999999999999999988   7788888765443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.65  E-value=1.2e-05  Score=65.25  Aligned_cols=32  Identities=31%  Similarity=0.481  Sum_probs=25.9

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ...+.+...++|+|+||+||||+|+++++.+.
T Consensus        39 ~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          39 YVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            33334445688999999999999999999884

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=3.3e-05  Score=64.66  Aligned_cols=42  Identities=33%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ...|++|+++|-=|+||||+|-.|+..|..+|.++..+|.|-
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            356889999999999999999999999999999999999993

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=0.00013  Score=58.71  Aligned_cols=24  Identities=38%  Similarity=0.508  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++|.|+||+||||+++++++.+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            477999999999999999999985

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.59  E-value=0.00011  Score=59.21  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++|.|++|+|||+++++++..+...+..+.+++...+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   75 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence            8999999999999999999999888888888876544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=7.1e-05  Score=62.07  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|+-|+|.|+||+|||+++++++..+   +.+++.++...+.
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~---~~~~~~i~~~~l~   75 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIM   75 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHT---TCEEEEECHHHHT
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHh---CCeEEEEEchhhc
Confidence            356679999999999999999999998   6777777655443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=5.3e-05  Score=65.19  Aligned_cols=42  Identities=24%  Similarity=0.295  Sum_probs=35.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      ...+...|.|+|+|||||||+..+|...+...|..+.++..|
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavD   91 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   91 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCC
Confidence            345688999999999999999999999998888777665544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.51  E-value=6.2e-05  Score=64.64  Aligned_cols=43  Identities=26%  Similarity=0.284  Sum_probs=36.1

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+.+...|-|+|+|||||||+...|.+.+...|.++.++-.|.
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp   89 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   89 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence            4467789999999999999999999998877888877666553

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.47  E-value=3.7e-05  Score=63.00  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ..+..++|.|+||+||||+++.|++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            45678999999999999999999999854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.47  E-value=5.8e-05  Score=61.05  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=28.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ++|+|+|++||||||+.+.|.+.+. .+..+..++.
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~   35 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNL   35 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEEC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEec
Confidence            4799999999999999999998774 3445666643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=4.1e-05  Score=63.86  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+++-|+|.|+||+|||+++++++..+   |.++++++...+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~---~~~~~~~~~~~l   77 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL   77 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT---TCEEEEECHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh---CCcEEEEEHHHh
Confidence            346679999999999999999999999   677777765444

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=4e-05  Score=61.98  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=26.5

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +....+.+...++|+|+||+||||+++.+++.+.
T Consensus        25 ~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          25 KKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             HHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHc
Confidence            3344444444588999999999999999999874

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=8.9e-05  Score=58.87  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=34.8

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLS-GAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~-GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.++|+|.. |+||||++-.|+..|..+|+++.++|.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            568999995 99999999999999999999999999764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.40  E-value=8.7e-05  Score=60.15  Aligned_cols=40  Identities=20%  Similarity=0.207  Sum_probs=35.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.+++|.|.||||||++|..++......|..+.+++.+.
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            6789999999999999999999999877788888888753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00011  Score=61.05  Aligned_cols=45  Identities=20%  Similarity=0.222  Sum_probs=39.9

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .+..+..++|+++|-=|+||||++-.|+..|..+|.++..+|.|-
T Consensus        14 ~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          14 DIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             HHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             HhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            334456689999999999999999999999999999999999994

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00014  Score=60.62  Aligned_cols=73  Identities=22%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-------GIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAE   92 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-------g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (272)
                      .....++|.|+||+|||+++..|++++...       +..++.+|...+..+.    .+.    .++..++..+...+..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~----~~~----g~~e~r~~~i~~~~~~  108 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT----KYR----GDFEKRFKALLKQLEQ  108 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC----CCS----SCHHHHHHHHHHHHSS
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccC----ccc----hhHHHHHHHHHHHhhc
Confidence            445678999999999999999999998653       2334555554443322    121    1233445555666666


Q ss_pred             CCCeEE-Ec
Q psy17388         93 CGFIAL-CS  100 (272)
Q Consensus        93 ~g~~VI-~d  100 (272)
                      .|.+++ +|
T Consensus       109 ~~~iIlfiD  117 (268)
T d1r6bx2         109 DTNSILFID  117 (268)
T ss_dssp             SSCEEEEET
T ss_pred             cCCceEEec
Confidence            776555 44

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00027  Score=55.98  Aligned_cols=71  Identities=27%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-------GIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAE   92 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-------g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~   92 (272)
                      +....++|.|.||+|||+++..|++++...       +.+++.+|...+..+.    .    .+.++-.++..+...+..
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~----~----~rG~~E~rl~~il~e~~~  112 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA----K----YRGEFEERLKGVLNDLAK  112 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTT----C----SHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccC----C----ccHHHHHHHHHHHHHHhc
Confidence            345678999999999999999999998642       2334455544333221    1    233455566666666544


Q ss_pred             -CCCeEE
Q psy17388         93 -CGFIAL   98 (272)
Q Consensus        93 -~g~~VI   98 (272)
                       .|.+|+
T Consensus       113 ~~~~iIL  119 (195)
T d1jbka_         113 QEGNVIL  119 (195)
T ss_dssp             STTTEEE
T ss_pred             CCCcEEE
Confidence             455443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=5.7e-05  Score=60.92  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=24.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ...+...++|.|+||+||||+|+.+++.+.
T Consensus        32 ~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          32 KDGNMPHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             HSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence            333333578999999999999999999985

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.32  E-value=8.7e-05  Score=64.69  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+++.++|.||||+|||++|++|+..+   |.++..++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~---~~~~i~in~  187 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNL  187 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSS
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEEC
Confidence            345789999999999999999999999   666665553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.32  E-value=6.3e-05  Score=67.35  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .|..|+|.||+|||||-+|+.||+.+   +.|++..|...+-+
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l---~VPFv~~daT~fTe   87 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTE   87 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGGC-
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHh---CCCEEEeecceeee
Confidence            36789999999999999999999998   77777777655543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.30  E-value=9.9e-05  Score=56.60  Aligned_cols=29  Identities=24%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+++.+|+|.|..||||||++|.+++.|+
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            35788999999999999999999999993

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.0011  Score=50.41  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .|+|.|.+||||||+.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.28  E-value=0.0013  Score=54.14  Aligned_cols=40  Identities=18%  Similarity=0.046  Sum_probs=34.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD   59 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D   59 (272)
                      +++.+++|.|.||+||||++..++..+. ..|.++.+++.+
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            4678999999999999999999997654 468889888765

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00065  Score=53.86  Aligned_cols=97  Identities=18%  Similarity=0.114  Sum_probs=48.4

Q ss_pred             HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388         86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP  165 (272)
Q Consensus        86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~  165 (272)
                      .....++.|.+++.+. .+.  ....++    ......++||+..|.-..+.|+.+|.....-.........+...|.  
T Consensus        90 ~i~~~~~~gk~~lldi-d~~--g~~~lk----~~~~~~i~IfI~pps~e~l~~l~kr~~~~~i~~r~~~~~~~e~~~~--  160 (199)
T d1kjwa2          90 SVREVAEQGKHCILDV-SAN--AVRRLQ----AAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFT--  160 (199)
T ss_dssp             HHHHHHHTTCEEEECC-CTT--HHHHHH----HTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHG--
T ss_pred             EEEehhcCCCcccccc-cch--HHhhhh----hhccceeEEeeccccHHHHHhhhccccHHHHHHHHHHHHHHHHHhh--
Confidence            3455677898888874 231  122222    2233456899988643333444333211100000101111111121  


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388        166 KNPDLILETVNVPVEKCANSVLDMIAAK  193 (272)
Q Consensus       166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~  193 (272)
                      ...+.+|.++  +.++++++|.+.|.+.
T Consensus       161 ~~fd~vI~Nd--dle~a~~~l~~iI~~~  186 (199)
T d1kjwa2         161 ECFSAIVEGD--SFEEIYHKVKRVIEDL  186 (199)
T ss_dssp             GGCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEECc--CHHHHHHHHHHHHHHh
Confidence            1245677654  6999999999988764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=0.00034  Score=59.65  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCCe-EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         20 QSNI-CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        20 ~~~~-lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      .+|. +++|.|++|+|||.+|+.|++.|...+.++..+|.-.+.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~   93 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM   93 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            3454 788999999999999999999986444567777765544

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=0.0079  Score=42.32  Aligned_cols=140  Identities=11%  Similarity=0.130  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCC-
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFV-  102 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~-  102 (272)
                      +|++.|+.++=|||+|..|.+.|     ....+.+..+.-.        ....+..++..    ..+.+...++|--++ 
T Consensus         2 liilegpdccfkstvaaklskel-----kypiikgssfela--------ksgneklfehf----nkladednviidrfvy   64 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGSSFELA--------KSGNEKLFEHF----NKLADEDNVIIDRFVY   64 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHH-----TCCEEECCCHHHH--------HHCHHHHHHHH----HHHTTCCSEEEESCHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhh-----cCceecCchhhhh--------hccCHHHHHHH----Hhhccccceeeehhhh
Confidence            78999999999999999999999     4444444332211        01112222222    123344434432211 


Q ss_pred             ------------C-CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc-c--ccccccccCC---
Q psy17388        103 ------------S-PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI-K--SFTGVSQPYE---  163 (272)
Q Consensus       103 ------------~-~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~-~--~~~~~~~~ye---  163 (272)
                                  + ........+....   ...-.+|||++++.++.+|+.      .|..+. +  ....+-..|.   
T Consensus        65 snlvyakkfkdysilterqlrfiedki---kakakvvylhadpsvikkrlr------vrgdeyiegkdidsilelyrevm  135 (164)
T d2axpa1          65 SNLVYAKKFKDYSILTERQLRFIEDKI---KAKAKVVYLHADPSVIKKRLR------VRGDEYIEGKDIDSILELYREVM  135 (164)
T ss_dssp             HHHHHTTTBSSCCCCCHHHHHHHHHHH---TTTEEEEEEECCHHHHHHHHH------HHTCSSCCSSHHHHHHHHHHHHH
T ss_pred             hhhHHHhhcccceehhHHHHHHHHHHh---hhheeEEEEecChHHHHHHhc------cccccccccCCHHHHHHHHHHHH
Confidence                        1 1112222232222   234578999999999999984      333221 1  1111111121   


Q ss_pred             -CCCCCcEEEeCCCCCHHHHHHHHHHH
Q psy17388        164 -APKNPDLILETVNVPVEKCANSVLDM  189 (272)
Q Consensus       164 -~~~~~~~~Idt~~~~~ee~~~~I~~~  189 (272)
                       ...-....-||..-+.+|++..|+-.
T Consensus       136 snaglhtyswdtgqwssdeiakdiifl  162 (164)
T d2axpa1         136 SNAGLHTYSWDTGQWSSDEIAKDIIFL  162 (164)
T ss_dssp             HTCSSCEEEEETTTSCHHHHHHHHHHH
T ss_pred             hcCCceeeecccCCcchHHhhhheeEe
Confidence             11223467788888999998887643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00029  Score=60.03  Aligned_cols=38  Identities=32%  Similarity=0.485  Sum_probs=31.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR   62 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~   62 (272)
                      ...++|+|++|+|||.+|+.|++.+   +.++..+|.-.+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l---~~~~i~~d~s~~~   89 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYM   89 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCS
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhc---cCCeeEecccccc
Confidence            3478999999999999999999998   5667777755543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.19  E-value=7.2e-05  Score=61.54  Aligned_cols=25  Identities=20%  Similarity=0.081  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      +++|.|+||+||||+++++++.|..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHh
Confidence            4677899999999999999999854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.17  E-value=0.00034  Score=58.25  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=36.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..+.++-|.|++||||||+|-.++......|..+.|+|++.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            36789999999999999999999998877788899999874

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.00033  Score=58.32  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|++||||||+|-.++......|..++|+|++.
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            35789999999999999999998887777788899999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00011  Score=59.80  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +..++|+|+||+||||+++++++.+.
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhhc
Confidence            34578999999999999999999873

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00036  Score=57.90  Aligned_cols=40  Identities=18%  Similarity=0.260  Sum_probs=36.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||+|-.++......|..++|+|++.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            6789999999999999999999998888888999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.02  E-value=0.00031  Score=57.26  Aligned_cols=35  Identities=31%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      .+.+|+|.|++|+||||+++.+++.+   +....+++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~---~~~~~~i~~   62 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDL   62 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC---CCCeEEEEe
Confidence            45689999999999999999999888   556666653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00022  Score=58.49  Aligned_cols=41  Identities=24%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++..|.|+|++||||||+++.|...+... -+.+.+|+-++
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i   67 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDL   67 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEET
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCCCC-CCEEEECCEEe
Confidence            478899999999999999999999876321 12445665443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.88  E-value=0.00025  Score=58.55  Aligned_cols=40  Identities=23%  Similarity=0.352  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      .++..+.|+|++||||||+++.|...+... -.-+++|+-+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~   78 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHD   78 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccCCC-ccEEEECCcc
Confidence            468899999999999999999998765321 1234566543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.88  E-value=0.00074  Score=53.99  Aligned_cols=39  Identities=28%  Similarity=0.404  Sum_probs=34.3

Q ss_pred             CeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         22 NICLLFP-GLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        22 ~~lI~l~-G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +++|.+. +--|+||||+|..|+..|...|.++.++|.|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4667565 88999999999999999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.87  E-value=0.00025  Score=57.76  Aligned_cols=41  Identities=17%  Similarity=0.106  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|++||||||+.+.++-.+... -+.+++++-++
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~-sG~I~~~g~~i   69 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKPT-EGEVYIDNIKT   69 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEC
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCCCCC-cceeEECCEEc
Confidence            578899999999999999999888655211 12345555433

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0003  Score=57.33  Aligned_cols=41  Identities=17%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.++-.+.... .-+.+++..+
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~s-G~I~i~g~~i   64 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLETITS-GDLFIGEKRM   64 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEESSSCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCCCCC-CEEEECCEEC
Confidence            5788999999999999999999987652211 2345555433

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.86  E-value=0.00071  Score=54.06  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=32.9

Q ss_pred             eEE-EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICL-LFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI-~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ++| +.+|--|+||||+|..|+..|...|.++.++|.|.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            345 44599999999999999999999999999999874

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.86  E-value=0.00031  Score=57.61  Aligned_cols=28  Identities=36%  Similarity=0.542  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .++.++.|.|++||||||+.+.|...+.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            5789999999999999999999987663

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00029  Score=58.15  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|+|++||||||+.+.|...+.... ..+++|+.++
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~-G~I~i~g~~i   78 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQPTG-GQLLLDGKPL   78 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSCCSE-EEEEETTEEG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccCCCc-CEEEECCEec
Confidence            5788999999999999999999987663211 2455666444

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.0052  Score=47.57  Aligned_cols=20  Identities=25%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La   43 (272)
                      .|+|.|.|||||||+.+.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            59999999999999999996

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00027  Score=57.91  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            578899999999999999999998755

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.83  E-value=0.00032  Score=57.42  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|++||||||+.+.|+-.+
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            467899999999999999999998765

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00036  Score=54.45  Aligned_cols=27  Identities=19%  Similarity=0.124  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.++.|.|+|||||||+|..++...
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999998765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00048  Score=54.88  Aligned_cols=31  Identities=26%  Similarity=0.652  Sum_probs=26.3

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ..++.|..++|.|++|+||||+|+.+++.+-
T Consensus        19 ~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          19 QAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3445566799999999999999999999883

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.80  E-value=0.00051  Score=58.57  Aligned_cols=40  Identities=13%  Similarity=0.039  Sum_probs=29.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN   63 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~   63 (272)
                      .++++.|+||+|||.+|++|+..+.. +.+++.++..++..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~-~~~~~~~~~~~~~~  163 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGG-KDKYATVRFGEPLS  163 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHT-TSCCEEEEBSCSST
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcC-CCCeEEEEhhHhhh
Confidence            35666899999999999999999842 23455666554443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.73  E-value=0.00087  Score=53.23  Aligned_cols=41  Identities=27%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCcc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGDN   60 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D~   60 (272)
                      .++.++.|.|.||+|||++|..++.. +...+..+.+++.+.
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~   65 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   65 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccC
Confidence            37889999999999999999876653 333456777777653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.72  E-value=0.00029  Score=57.21  Aligned_cols=41  Identities=27%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.|+-.+... -.-+++++.++
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~-sG~I~~~G~~i   64 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDV   64 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSCCS-EEEEEETTEEC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CCEEEEccEec
Confidence            578899999999999999999999765321 12345665544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.0017  Score=56.72  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEecCccccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-------GIPAYALDGDNLRN   63 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-------g~~~~~ld~D~i~~   63 (272)
                      +....++|.|.||+|||+++..|++++...       +..++.+|...+..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~a   91 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA   91 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhc
Confidence            444567888999999999999999988653       23355566554433

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.71  E-value=0.00046  Score=56.38  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+.+.+.-.+... -..+++++.++
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~-sG~I~i~g~~i   70 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDV   70 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEEC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCEEEEcceec
Confidence            578899999999999999999999766321 12345665433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00058  Score=55.44  Aligned_cols=29  Identities=38%  Similarity=0.505  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.|..++|.|+||+||||+|+.+++.+.
T Consensus        31 ~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          31 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             TCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            34466789999999999999999999985

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.70  E-value=0.00038  Score=57.60  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|++||||||+++.|+-.+... -.-+++++.++
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~-~G~I~~~G~~i   66 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLEKPS-EGAIIVNGQNI   66 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEETTEEC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCccCC-CCCEEECCEEe
Confidence            578899999999999999999998654211 12345666544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00045  Score=57.86  Aligned_cols=28  Identities=32%  Similarity=0.377  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .+|.++.|.|++||||||+.+.|...+.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            5788999999999999999999987663

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.64  E-value=0.0007  Score=58.76  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      ..++..|+|.||+|+|||-+|++||+.+   +.++..+|.-.
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~---~~~~ir~D~s~  103 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS  103 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhc---ccceeehhhhh
Confidence            3567789999999999999999999987   34555555433

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.61  E-value=0.0006  Score=53.02  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+.-|+|+|.||+||||+|-+|.++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            4566999999999999999988875

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.60  E-value=0.001  Score=54.71  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.|.|+|-=|+||||+|-.|+..|...|+++..+|.|-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46888999999999999999999999999999999884

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.60  E-value=0.00039  Score=55.27  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|+.||||||+.+.|+..+.... +-+.+++-.+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~-G~I~~~g~~i   65 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLKPLK-GEIIYNGVPI   65 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEETTEEG
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccccCC-CEEEECCEeh
Confidence            4678999999999999999999987663211 2335555433

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.60  E-value=0.00031  Score=57.50  Aligned_cols=27  Identities=30%  Similarity=0.231  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|++||||||+.+.|+-.+
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            578899999999999999999999765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00081  Score=54.18  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+++|+|+-||||||+.+.|.+..  .|.++.++-.|
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~--~~~riaVI~Ne   38 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENE   38 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC--CCCcEEEEEec
Confidence            478999999999999988887642  36666666544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.53  E-value=0.00038  Score=57.50  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|+|++||||||+.+.|...+... -..+.+++.++
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i   82 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNI   82 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCCcc-ccccccCCEEc
Confidence            478899999999999999999988765321 12455665444

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.51  E-value=0.0006  Score=53.06  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+.=|+|+|+||+||||+|-+|.++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3556899999999999999988765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00059  Score=54.60  Aligned_cols=40  Identities=10%  Similarity=0.052  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH------HcCCCEEEecCcc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI------AQGIPAYALDGDN   60 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~------~~g~~~~~ld~D~   60 (272)
                      ++.++.|.|+|||||||+|-.++....      ..|..+.+++...
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~   78 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG   78 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecc
Confidence            678999999999999999998875421      1234567777653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.43  E-value=0.0012  Score=50.97  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+.=|+|+|.||+||||+|-+|.++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            4566999999999999999888876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.43  E-value=0.00051  Score=58.57  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      -.|+|.|+||+||||+|+.++..|+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3689999999999999999999884

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.40  E-value=0.0011  Score=53.34  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++.+++|.|+|||||||+|-.++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            67899999999999999999998765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0012  Score=53.05  Aligned_cols=26  Identities=23%  Similarity=0.060  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++.++.|.|+||||||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.35  E-value=0.00097  Score=54.40  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      -++.|.|++||||||+.+.|+-.+.... +.+++++.++
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p~~-G~I~~~G~~i   62 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKPDR-GEVRLNGADI   62 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEEC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCCCc-eEEEECCEEC
Confidence            4778999999999999999998763211 2345655433

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.35  E-value=0.0019  Score=53.63  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=34.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN   60 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~   60 (272)
                      +.|+++|-=|+||||+|--|+..|...|.++..+|.|-
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            46778999999999999999999999999999999884

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.33  E-value=0.00089  Score=54.70  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .+|.++.|.|++||||||+.+.|.-.+... ..-+.+++.++
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~-~G~I~~~G~~i   70 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDI   70 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEeccccc
Confidence            478899999999999999999998766321 12345555443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.32  E-value=0.036  Score=42.13  Aligned_cols=24  Identities=33%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +-..|.|.|.|.|||||+..+|..
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            345699999999999999999974

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0023  Score=52.35  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCCEEEecCccc
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIA----------QGIPAYALDGDNL   61 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----------~g~~~~~ld~D~i   61 (272)
                      ++.+.+|.|.+|+||||++-.|+..+..          .+.++.|++.+.-
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence            4678999999999999999999987642          1235777777653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.23  E-value=0.0011  Score=54.70  Aligned_cols=41  Identities=20%  Similarity=0.307  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      .++.++.|.|+.||||||+.+.|.-.+... -.-+++++.++
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~-~G~I~~~g~~i   68 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDI   68 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCS-EEEEEETTEEC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCcCC-CcEEEECCEec
Confidence            478899999999999999999998765321 12345665444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.18  E-value=0.0015  Score=48.47  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|+|.|.|||||||+.+.|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.00099  Score=54.08  Aligned_cols=40  Identities=23%  Similarity=0.363  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL   61 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i   61 (272)
                      ++|.++.|.|++||||||+.+.|+-..+  +-.-+.+++..+
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl~~--~~G~I~~~g~~i   62 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPL   62 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTSCC--CSSEEEESSSBG
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC--CceEEEECCEEC
Confidence            4789999999999999999999886432  223445555443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.04  E-value=0.0019  Score=51.36  Aligned_cols=27  Identities=37%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ++.+++|.|.||+||||++..++..+.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999998763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.04  E-value=0.0025  Score=52.86  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ....+|.|.|+.|.||||+|+.+.+.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999998765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0016  Score=52.99  Aligned_cols=27  Identities=26%  Similarity=0.300  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.++.|.|+.||||||+.+.|+-.+
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            578899999999999999999999776

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.92  E-value=0.0038  Score=54.66  Aligned_cols=37  Identities=16%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .+.-+|+|+|+.||||||....+.+.+...+.++..+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~ti  192 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  192 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEe
Confidence            4556899999999999999999999885444555444

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.89  E-value=0.003  Score=47.89  Aligned_cols=25  Identities=32%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+-.-|+|+|.+||||||+..+|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4556799999999999999998865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.003  Score=50.84  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ++...+|.|.||+||||+..+|..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHST
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcc
Confidence            456889999999999999998854

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.69  E-value=0.0041  Score=46.27  Aligned_cols=23  Identities=39%  Similarity=0.691  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .-|+|.|.||+||||+.+++...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45999999999999999988653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.68  E-value=0.0032  Score=47.70  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+..-|+|.|.+||||||+..+|...
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44556899999999999999988643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0033  Score=46.47  Aligned_cols=21  Identities=43%  Similarity=0.668  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~   45 (272)
                      |+|.|.||+||||+...|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999988763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.64  E-value=0.0021  Score=54.71  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      ..|+++|+.||||||+.++|...++. ...+..+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~-~~rivti  199 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISI  199 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEE
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc-ccceeec
Confidence            45899999999999999999987753 3344444

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0037  Score=46.67  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      |.-|+|.|.++|||||+.++|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35689999999999999998864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.56  E-value=0.0043  Score=44.71  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHH-HHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISF-QIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr-~La~~L~~~g~~~~~ld   57 (272)
                      +++...+|.+++|||||+++- ++.......+..+.++-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            356788999999999997773 55555555555555443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.55  E-value=0.003  Score=48.25  Aligned_cols=21  Identities=24%  Similarity=0.683  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.||+||||+..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.42  E-value=0.005  Score=46.19  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|+|.|.+||||||+.+.|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4589999999999999998753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0042  Score=47.13  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +|.|.|.+++||||+.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0049  Score=47.93  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .|+|.|.|+|||||+..+|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.0051  Score=48.10  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +.|+|.|.+||||||+..+|..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999998875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.0067  Score=47.69  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=28.4

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      +.......+..++|.|++|+||||+|..|++.+.
T Consensus         7 ~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2           7 KRIIEKSEGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             HHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            3444456788999999999999999999999874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.28  E-value=0.0052  Score=46.49  Aligned_cols=21  Identities=38%  Similarity=0.483  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~   45 (272)
                      |++.|.+|+||||+...+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999988753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0055  Score=46.08  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|++.|.+|+||||+...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998774

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.24  E-value=0.0055  Score=46.72  Aligned_cols=21  Identities=14%  Similarity=0.254  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .|+|.|.+|+||||+.++|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            699999999999999998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.23  E-value=0.0068  Score=45.89  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+..-|++.|.+|+||||+...+..
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999987743

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.008  Score=52.36  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ..++|.|.+|||||+..+.+...+-..|.+++++|.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            458999999999999998777777677888888874

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.016  Score=42.42  Aligned_cols=37  Identities=8%  Similarity=0.006  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +|.+-+++|+|.|||||-.-....+....|.++..+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ik   37 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   37 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEe
Confidence            5778899999999999977776777766777766554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.18  E-value=0.0079  Score=48.93  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      ..-|+|.|.+|+||+++|+.|.+.-.....++..++.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~   59 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV   59 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchh
Confidence            3347889999999999999998754333334444443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0064  Score=52.34  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ..+.+|+|+||+||||+...+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHH
Confidence            4589999999999999887766555

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.16  E-value=0.0049  Score=46.81  Aligned_cols=27  Identities=33%  Similarity=0.605  Sum_probs=22.4

Q ss_pred             cCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         18 EGQSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        18 ~~~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .+.+..-|++.|.+||||||+.+.+..
T Consensus         8 ~~~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_           8 FGNKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             HTTCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            345667799999999999999998753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.13  E-value=0.18  Score=39.11  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      ..|.+.|-+++||||+..+|....+
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            6799999999999999999976554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.10  E-value=0.022  Score=42.17  Aligned_cols=38  Identities=8%  Similarity=-0.069  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      ..|.+-+++|+|.|||||-.-....++...|.++..+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~   42 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   42 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEE
Confidence            56889999999999999988888888877888776543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0061  Score=46.78  Aligned_cols=20  Identities=40%  Similarity=0.566  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+.+.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999987763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.01  E-value=0.0076  Score=49.62  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=15.5

Q ss_pred             EEEEcCCCCCHHHHH-HHHHHHH
Q psy17388         25 LLFPGLSGAGKTSIS-FQIESYL   46 (272)
Q Consensus        25 I~l~G~~GsGKSTlA-r~La~~L   46 (272)
                      ++|.|+|||||||++ ..++..+
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHHHH
Confidence            567799999999865 3444444

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0068  Score=45.87  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0071  Score=45.90  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |++.|.+|+||||+...+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.99  E-value=0.0072  Score=45.38  Aligned_cols=21  Identities=38%  Similarity=0.370  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+...+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478899999999999998865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.007  Score=45.88  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+...+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.0071  Score=45.45  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |++.|.+|+||||+.+++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.88  E-value=0.0052  Score=47.08  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |.|.|.|++||||+..+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998853

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.0049  Score=46.74  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ...-|+|.|.|++||||+.++|..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhC
Confidence            346799999999999999998854

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0084  Score=45.07  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+.+.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0084  Score=45.55  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.79  E-value=0.0031  Score=51.00  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++...+|.|.||+||||+..+|....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            45677899999999999999987543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.79  E-value=0.01  Score=45.23  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      +.-|.|.|.+|+||||+..+|..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45689999999999999998864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.0053  Score=46.87  Aligned_cols=20  Identities=25%  Similarity=0.356  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |.|.|.|+|||||+.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.77  E-value=0.0088  Score=48.83  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      ..+..|+|.|.+||||||+...|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            4567899999999999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.0088  Score=45.23  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+...+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0093  Score=44.87  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0096  Score=44.93  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+...+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0098  Score=44.48  Aligned_cols=20  Identities=25%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |++.|.+|+||||+...+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.64  E-value=0.0097  Score=45.53  Aligned_cols=20  Identities=40%  Similarity=0.478  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |++.|.+|+||||+...+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.64  E-value=0.0085  Score=45.72  Aligned_cols=24  Identities=38%  Similarity=0.760  Sum_probs=20.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La   43 (272)
                      .+-.-|++.|.+||||||+.+.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            455679999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.01  Score=44.91  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+...+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999988865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.01  Score=44.81  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=44.55  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=44.23  Aligned_cols=20  Identities=35%  Similarity=0.449  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+.+.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.011  Score=44.33  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|+|.|.+|+||||+.+.+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999998865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.011  Score=44.63  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.011  Score=44.56  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |++.|.+|+||||+...+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.012  Score=44.66  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|+|.|.+|+||||+.+.+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.34  E-value=0.012  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=15.9

Q ss_pred             EEEEcCCCCCHHHHHHH-HHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQ-IESYL   46 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~-La~~L   46 (272)
                      ++|.|+|||||||++-. +++.+
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            66779999999987644 34444

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.016  Score=43.46  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|+|.|.+|+||||+...+..
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999998875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.31  E-value=0.1  Score=42.80  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.|.|.|..||||||++.+|....
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            579999999999999999997655

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.013  Score=44.01  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|++.|.+|+||||+...+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999998865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.014  Score=44.38  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|++.|.+|+||||+.+.+..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3489999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.24  E-value=0.014  Score=44.04  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=94.23  E-value=0.041  Score=40.49  Aligned_cols=36  Identities=17%  Similarity=0.037  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      |.+-+++|+|.|||||-.-....++...|.++..+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ik   37 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   37 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            567889999999999955555566666777776543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.21  E-value=0.013  Score=45.26  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+...+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.18  E-value=0.015  Score=45.77  Aligned_cols=27  Identities=22%  Similarity=0.545  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+...|+|.|+|++|||++|.+|.+.+
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHh
Confidence            345789999999999999999999998

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.0038  Score=46.52  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|+|.|.|++||||+.++|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.015  Score=44.04  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|+|.|.+|+||||+...+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999887653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.016  Score=43.61  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|++.|.+|+||||+.+.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998775

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.017  Score=43.30  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|+|.|.+|+||||+...+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588899999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.019  Score=43.84  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .-|+|.|.+|+||||+.+++...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999988753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.021  Score=42.79  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .-|++.|.+|+||||+.+.+...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            34899999999999999988653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=0.018  Score=43.23  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|+|.|.+|+||||+...+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.017  Score=43.69  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.82  E-value=0.016  Score=44.48  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQI   42 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~L   42 (272)
                      -|+|.|.+||||||+...+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999999

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.78  E-value=0.0096  Score=45.10  Aligned_cols=20  Identities=45%  Similarity=0.703  Sum_probs=8.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~   44 (272)
                      |+|.|.+|+||||+...|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999987775

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.019  Score=43.95  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            389999999999999988765

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.58  E-value=0.012  Score=45.51  Aligned_cols=31  Identities=13%  Similarity=0.111  Sum_probs=24.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +|+++|...||||..|..|+..    +.++.|+.+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~----~~~~~YiAT   31 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGD----APQVLYIAT   31 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----CSSEEEEEC
T ss_pred             CEEEECCCCccHHHHHHHHHhc----CCCcEEEEc
Confidence            4799999999999999987643    346777765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.013  Score=44.38  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|++.|.+|+||||+..++...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999877653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.46  E-value=0.028  Score=44.71  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+|.|.|-+.+||||+..+|....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            469999999999999999997654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.43  E-value=0.023  Score=43.31  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+|+||||+.+.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.34  E-value=0.021  Score=45.22  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+|.|.+||||||+.+.+..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            479999999999999998854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.25  E-value=0.028  Score=46.08  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+...++|.|++++||||++..|.+.+
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999988

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.22  E-value=0.027  Score=42.38  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|++.|.+|+||||+...+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999998765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.02  E-value=0.033  Score=40.14  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .-...+|.++.|||||+++-.+...   .|..+.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~---~~~~vli~   39 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVL   39 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT---TTCCEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH---cCCcEEEE
Confidence            3467899999999999987554433   35555544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.033  Score=42.70  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|++.|.+|+||||+...+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999987765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.67  E-value=0.033  Score=48.31  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La   43 (272)
                      .|..|.|.|.||+||||+..+|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            57789999999999999999985

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.61  E-value=0.036  Score=51.75  Aligned_cols=34  Identities=32%  Similarity=0.498  Sum_probs=28.1

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |.....+++..|+++|-+|||||+-++.+.+.|.
T Consensus        83 ~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          83 RSMLQDREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4444456778999999999999999999988773

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=92.54  E-value=0.038  Score=51.39  Aligned_cols=34  Identities=41%  Similarity=0.703  Sum_probs=27.4

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |.....++...|+++|-+|||||+-++.+.+.|.
T Consensus        78 ~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          78 RSMRQSQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3344446778899999999999999999987764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.50  E-value=0.0093  Score=45.36  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+.+|+|+.||||||+..+|.-.|
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            467889999999999999999877

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.39  E-value=0.039  Score=41.97  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|+|.|.+|+||||+-+.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.041  Score=41.77  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .-|++.|.+|+||||+...+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5689999999999999997754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.052  Score=43.49  Aligned_cols=25  Identities=20%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++++|+|+.++||||+.|.++-..
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHH
Confidence            4689999999999999999988643

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.71  Score=36.51  Aligned_cols=44  Identities=16%  Similarity=0.031  Sum_probs=35.5

Q ss_pred             hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388         16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD   59 (272)
Q Consensus        16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D   59 (272)
                      .+....|+..+|+|-.|||||-|+-..+...-..|..+.++-..
T Consensus        70 ~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt  113 (233)
T d2eyqa3          70 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT  113 (233)
T ss_dssp             HHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             HHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccH
Confidence            34556788999999999999999998888776778888776543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.07  E-value=0.046  Score=50.99  Aligned_cols=34  Identities=38%  Similarity=0.553  Sum_probs=27.9

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |.....++...|+|+|-+|||||..++.+.+.|.
T Consensus       117 ~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         117 RSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             HHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3444446778999999999999999999988774

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.037  Score=46.23  Aligned_cols=21  Identities=43%  Similarity=0.616  Sum_probs=16.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISF   40 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr   40 (272)
                      ..+.+-+|-|+||+||||++.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            344577899999999999774

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.98  E-value=0.048  Score=41.20  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      -|+|.|..|+||||+.+.+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999988654

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.91  E-value=0.64  Score=37.53  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=34.3

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +....|+.-+|.|-.|||||-|+-..+...-..|..+.++-.
T Consensus        99 ~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~P  140 (264)
T d1gm5a3          99 MISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP  140 (264)
T ss_dssp             HHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred             hhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEee
Confidence            345677888999999999999999888777677888877654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.81  E-value=0.049  Score=51.49  Aligned_cols=34  Identities=29%  Similarity=0.402  Sum_probs=27.9

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |......+...|+++|-+|||||+-++.+.+.|.
T Consensus       115 ~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         115 QFMLTDRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4444446778899999999999999998888874

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.79  E-value=0.092  Score=40.70  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      ..|.+.|-..+||||++.+|...+..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~   29 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAE   29 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHH
Confidence            56999999999999999999876543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.67  E-value=0.043  Score=46.08  Aligned_cols=21  Identities=43%  Similarity=0.612  Sum_probs=17.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISF   40 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr   40 (272)
                      ..+.+-+|-|+||+||||++.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            344566899999999999983

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.33  E-value=0.043  Score=45.00  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .+.+-+|+|+.||||||+-.+|.-.|
T Consensus        23 ~~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          23 SDRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             CSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            34578999999999999999996543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=91.30  E-value=0.06  Score=44.06  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.|.|.|..|+||||++.+|.-..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHc
Confidence            478999999999999999996543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=91.23  E-value=0.064  Score=50.17  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         15 DFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        15 ~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      .....+++..|+|+|-+|||||+.++.+.+.|.
T Consensus        87 ~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          87 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            333446778999999999999999999988874

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.07  E-value=0.065  Score=41.34  Aligned_cols=20  Identities=30%  Similarity=0.245  Sum_probs=16.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQ   41 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~   41 (272)
                      +..++++++.|||||+++-.
T Consensus        40 ~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHHH
Confidence            44578999999999998743

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.98  E-value=0.044  Score=45.95  Aligned_cols=20  Identities=45%  Similarity=0.620  Sum_probs=16.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISF   40 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr   40 (272)
                      .+.+-+|-|+||+||||++.
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            34577999999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.96  E-value=0.11  Score=42.80  Aligned_cols=29  Identities=21%  Similarity=0.067  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYLIA   48 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~   48 (272)
                      .+|.-+.|.|.+|+||||++..+++....
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            36777899999999999999999987754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.85  E-value=0.074  Score=42.29  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH--HHHHcCC
Q psy17388         23 ICLLFPGLSGAGKTSISFQIES--YLIAQGI   51 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~--~L~~~g~   51 (272)
                      .+++|+|+..+||||+.|.++-  .|.+.|.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~   66 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGS   66 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccc
Confidence            4789999999999999998775  3443443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.82  E-value=0.068  Score=50.44  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388         14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI   47 (272)
Q Consensus        14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~   47 (272)
                      |.....++...|+|+|-+|||||..++.+.+.|.
T Consensus       113 ~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         113 QNMVTDRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3333445678999999999999999999988875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.23  E-value=0.085  Score=44.88  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.+-+|+|+.||||||+-.++.=.|
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4577899999999999999997444

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.10  E-value=0.13  Score=39.13  Aligned_cols=32  Identities=31%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEe
Q psy17388         25 LLFPGLSGAGKTSISFQIESYLI-AQGIPAYAL   56 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~l   56 (272)
                      .+++++.|||||.++-.++.... ..+..+.++
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i   58 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLML   58 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEE
Confidence            56889999999998877765432 234445444

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.03  E-value=0.13  Score=41.80  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .++..|.+.|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            35677999999999999999998863

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.89  E-value=0.094  Score=41.48  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      .+.-++++++.|+|||+++-..+..+...|..+.++
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            345678889999999998877666554455555544

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=89.65  E-value=0.11  Score=42.24  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         22 NICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        22 ~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ++-|-|.|.|.+||||+-.+|...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            356899999999999999999864

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.75  E-value=0.15  Score=41.40  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCCHHHH-H-HHHHHHHHHcCCCEEEec
Q psy17388         20 QSNICLLFPGLSGAGKTSI-S-FQIESYLIAQGIPAYALD   57 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTl-A-r~La~~L~~~g~~~~~ld   57 (272)
                      .+++.+++.++.|||||+. . ..+...+. +|..+.++-
T Consensus         7 ~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi~   45 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLILA   45 (305)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEEE
T ss_pred             hcCCcEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEEc
Confidence            4667899999999999963 2 33433332 355565553

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.67  E-value=0.15  Score=42.01  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      ..+-|.|.|.|.|||||+=.+|...
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            3467999999999999999999853

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.43  E-value=0.17  Score=39.02  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La   43 (272)
                      |...|.+.|-..+||||+..+|.
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~   29 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAIT   29 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEEccCCcHHHHHHHHH
Confidence            33679999999999999999985

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.22  E-value=0.31  Score=37.34  Aligned_cols=40  Identities=15%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388         17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG   58 (272)
Q Consensus        17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~   58 (272)
                      +...++++|.|+|.  .||||++..|+..|...|....++.+
T Consensus         9 l~~~~~~~iAITGT--nGKTTt~~~l~~iL~~~g~~~~~~~g   48 (207)
T d1j6ua3           9 LKREKKEEFAVTGT--DGKTTTTAMVAHVLKHLRKSPTVFLG   48 (207)
T ss_dssp             HHHHCCCEEEEECS--SSHHHHHHHHHHHHHHTTCCCEEECS
T ss_pred             HhhcCCCEEEEECC--CCHHHHHHHHHHHHHhCCCCCeEEEC
Confidence            33456789999996  68999999999999888876544443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.15  E-value=0.19  Score=38.34  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIE   43 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La   43 (272)
                      ..|.+.|-..+||||+..+|.
T Consensus         6 inIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEeccCCcHHHHHHHHH
Confidence            458999999999999999995

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.77  E-value=0.16  Score=41.94  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~   45 (272)
                      |.|.|.|.+||||+-.+|...
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999754

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=0.49  Score=36.48  Aligned_cols=35  Identities=14%  Similarity=0.115  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +-++|.|+|.-  ||||+...|++.|...|.++.++.
T Consensus         4 ~~~vI~ITGT~--GKTTt~~~l~~iL~~~g~~~~~~g   38 (234)
T d1e8ca3           4 NLRLVGVTGTN--GKTTTTQLLAQWSQLLGEISAVMG   38 (234)
T ss_dssp             SSEEEEEESSS--CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCC--cHHHHHHHHHHHHHHCCCCeEEEC
Confidence            34689999975  999999999999998888876654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.53  E-value=0.21  Score=40.65  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~   44 (272)
                      .| -|+++|-.+|||||+..+|..
T Consensus        26 ~P-~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LP-QIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CC-EEEEEEBTTSCHHHHHHHHHT
T ss_pred             CC-eEEEEcCCCCCHHHHHHHHhC
Confidence            34 477889999999999999964

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.21  E-value=0.34  Score=37.34  Aligned_cols=22  Identities=23%  Similarity=0.187  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Q psy17388         25 LLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        25 I~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .++.+++|+|||-++-.++..+
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHS
T ss_pred             cEEEeCCCCCceehHHhHHHHh
Confidence            3567899999999998888776

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.94  E-value=0.54  Score=38.26  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +|.-+.|.|.+|+||||++..++...
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            56668999999999999999998775

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.87  E-value=0.24  Score=40.53  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIES   44 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~   44 (272)
                      -|+++|-.+|||||+..+|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHT
T ss_pred             eEEEEeCCCCCHHHHHHHHhC
Confidence            478889999999999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.82  E-value=0.24  Score=39.63  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         20 QSNICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        20 ~~~~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ++...|++.|-.++||||+...|...+
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~   48 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLT   48 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHT
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHc
Confidence            334459999999999999999996544

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=84.60  E-value=0.45  Score=36.10  Aligned_cols=32  Identities=25%  Similarity=0.300  Sum_probs=26.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAY   54 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~   54 (272)
                      |+++|.++|.  -||||++..|+..|...|..+.
T Consensus         1 p~kvI~VTGT--nGKTTt~~mi~~iL~~~g~~~~   32 (214)
T d1gg4a4           1 PARVVALTGS--SGKTSVKEMTAAILSQCGNTLY   32 (214)
T ss_dssp             CCEEEEEECS--SCHHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHHhCCCCEE
Confidence            4578999996  5899999999999987776544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=83.90  E-value=0.3  Score=38.45  Aligned_cols=23  Identities=17%  Similarity=0.088  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         24 CLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        24 lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      .|+++|-..+||||+..+|...+
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHc
Confidence            47889999999999999997665

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.32  Score=39.66  Aligned_cols=23  Identities=17%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESY   45 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~   45 (272)
                      .+|.++|+.++||||+...|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            57899999999999999987754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.18  E-value=0.88  Score=30.61  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD   57 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld   57 (272)
                      +.+-|.|.|.-|+|.|.+|+.|.++    |+.+.-.|
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~----G~~VsGSD   39 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNE----GYQISGSD   39 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHH----TCEEEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhC----CCEEEEEe
Confidence            4567999999999999999998887    66654444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.75  E-value=0.41  Score=37.38  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ..|.+.|--++||||++..|...+
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~   27 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDR   27 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHc
Confidence            569999999999999999887655

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=82.43  E-value=0.99  Score=34.04  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388         21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL   56 (272)
Q Consensus        21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l   56 (272)
                      +.++|.++|.  .||||....|+..|...|..+.+.
T Consensus        10 ~~~vI~VTGT--~GKTTt~~~l~~iL~~~g~~~~~~   43 (204)
T d2jfga3          10 QAPIVAITGS--NGKSTVTTLVGEMAKAAGVNVGVG   43 (204)
T ss_dssp             CSCEEEEECS--SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECC--CCHHHHHHHHHHHHHhcCCCcccC
Confidence            4568999996  689999999999999888776544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.28  E-value=0.54  Score=37.29  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      ..|+++|-.++||||+...|.-.+
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~   30 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKC   30 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHc
Confidence            589999999999999999998766

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.33  E-value=0.34  Score=40.79  Aligned_cols=24  Identities=8%  Similarity=0.027  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388         23 ICLLFPGLSGAGKTSISFQIESYL   46 (272)
Q Consensus        23 ~lI~l~G~~GsGKSTlAr~La~~L   46 (272)
                      +.|.|.|..++||||++.+|....
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHC
Confidence            569999999999999999997655