Psyllid ID: psy17389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MELARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLSTP
Secondary Structure (PSIPRED)
cccccccccccEEEEcccHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccHHcHHHHHHcHHHHHHHHHccHHHHcccEEEEEEcccccccHHHHHHHHHHcccEEEEEEEEccccHHHHHHHccccccHHHccccccEEEEEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEcccHHHHHHHHHHHHHcccHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHccEEEEEEccccccccHHHHHHHHHcccEEEEEEEccccccccEEEEccHHHcccccHHccccEEEEEEcccccccccccccccccccccHcccccHccccEEEEEEEEEcccccccccccccHHHHHHHHHHcccccEEEEEEEcccEccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
MELARYDKTEMTMLKLHRYEDLDNLIKNKENilqhsqteptedamktggldlvvvpgraftetgkrctvsfswpyigcflkhpvyeqsKRISiyvdrddeisTRKIIQHICSsgkecfiprydktemTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENIlqhsqteptedamktggldlvvvpgraftetgkrmgrgkgyYDTYLSELkrisphcktIGLAFScqmvedlpmsdhdvpldyvihplstp
Flexible Loop (DISEMBL)
melarydktemtmlklhRYEDLDNLIKNKENILQHsqteptedamktgGLDLVVVPGRAFTetgkrctvsfsWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQhicssgkecfipryDKTEMTMRIFRqtwsgeatlrsRVVLRELVLHRYEDLDNLIKNKENILQHSqteptedamktggLDLVVVPGRaftetgkrmgrgkgYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLSTP
Low Complexity Region (SEG)
MELARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATlrsrvvlrelvlhrYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLSTP
Disordered region (IsUnstruct)
*************LKLHRYEDLDNLI*********************GGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENI***************GGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH*****
Disordered Region (DISOPRED)
*ELARYDKTEMTMLKLHRYEDLDNLIK********************GGLDLVV*****************SWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL***
Disordered Region (DISEMBL)
MELARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLSTP
Disordered Region (DISPRO)
**L*RYDKTEMTMLKLHRYEDLDNLIKNKENILQHS**EPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELARYDKTEMTMLKLHRxxxxxxxxxxxxxxxxxxxxxPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRxxxxxxxxxxxxxxxxxxxxxPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLSTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q9D110	203	5-formyltetrahydrofolate	yes	N/A	0.594	0.758	0.382	6e-26
P80405	201	5-formyltetrahydrofolate	yes	N/A	0.602	0.776	0.375	1e-25
P49914	203	5-formyltetrahydrofolate	yes	N/A	0.610	0.778	0.357	5e-24
Q9XWE6	206	Probable 5-formyltetrahyd	yes	N/A	0.583	0.733	0.348	9e-19
P0AC28	182	Uncharacterized protein Y	N/A	N/A	0.575	0.818	0.258	2e-12
P0AC29	182	Uncharacterized protein Y	N/A	N/A	0.575	0.818	0.258	2e-12
P44905	187	Uncharacterized protein H	yes	N/A	0.521	0.721	0.289	4e-11
P40099	211	5-formyltetrahydrofolate	yes	N/A	0.579	0.710	0.291	5e-11
P54491	187	Uncharacterized protein Y	yes	N/A	0.540	0.748	0.277	9e-11
Q89AD6	195	Uncharacterized protein b	yes	N/A	0.555	0.738	0.303	1e-09

>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2 SV=2

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 24/178 (13%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + H  Y+ SKRISI++   DE+ T  II+ I   GK CFIPRY      M + R T S E
Sbjct: 41  IAHNQYQNSKRISIFLSMQDEVETEVIIKDIFKQGKICFIPRYQFQSNHMDMVRLTSSEE 100

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
             L                   L K   NI Q  + +  E+A+ TGGLDL+ +PG  F +
Sbjct: 101 IAL-------------------LPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFDK 141

Query: 200 TGKRMGRGKGYYDTYLS---ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
            G R+GRGKGYYDTYL    + + + P+  T+ LAF  Q+   +P+ +HD+ +D V++
Sbjct: 142 DGNRLGRGKGYYDTYLKRCVQHQEVKPY--TMALAFKEQICPQIPVDEHDMKVDEVLY 197

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus GN=MTHFS PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 20/176 (11%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + H  Y++S+RISI++   DEI T +II+ I   GK CFIPRY      M + +      
Sbjct: 41  IAHRQYQKSQRISIFLSMPDEIETEEIIKDIFQQGKVCFIPRYRLQSNHMDMVK------ 94

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
                        L   +++ +L K   NI Q S+++  E+A+ TGGLDL+ +PG  F  
Sbjct: 95  -------------LASADEISSLPKTSWNIHQPSESDTREEALATGGLDLIFMPGLGFDR 141

Query: 200 TGKRMGRGKGYYDTYLSE-LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
            G R+GRG+GYYDTYL   L++      TI LAF  Q+   +P+ D DV +D V++
Sbjct: 142 NGNRLGRGRGYYDTYLQRCLQQQGAKPYTIALAFREQICPQVPVDDTDVSVDEVLY 197

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 24/182 (13%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + H  Y++SKRISI++   DEI T +II+ I   GK CFIPRY      M + R      
Sbjct: 41  IAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVR------ 94

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
                        +   E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F +
Sbjct: 95  -------------IESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDK 141

Query: 200 TGKRMGRGKGYYDTYLS---ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL 256
            G R+GRGKGYYD YL    + + + P+  T+ LAF  Q+   +P++++D+ +D V++  
Sbjct: 142 HGNRLGRGKGYYDAYLKRCLQHQEVKPY--TLALAFKEQICLQVPVNENDMKVDEVLYED 199

Query: 257 ST 258
           S+
Sbjct: 200 SS 201

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 21/172 (12%)

Query: 85  YEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRS 144
           +++SKR+S+YV    EI T  IIQ     GKE FIP++ K    M + R           
Sbjct: 44  FQESKRLSVYVSTSGEIQTDSIIQKALEMGKEVFIPQFTKGSTAMDMVR----------- 92

Query: 145 RVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRM 204
                   +      DNL      I Q       +   +TG LDL++ PG AF+  G R 
Sbjct: 93  --------VPDQTAFDNLPSTLWGIRQPEPKWKWQSYHETGPLDLILAPGVAFSPYGLRC 144

Query: 205 GRGKGYYDTYLSELKRISPHC--KTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
           G GKGYYD + S   +  P    K IGLA   Q++  +P+S+ DV LD VI+
Sbjct: 145 GHGKGYYDRFFSTHHKHFPENSPKKIGLALREQIIGTIPISETDVELDEVIY 196

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12) GN=ygfA PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + +P    +  +++++  D E+ T+ +I+ +  +GK  ++P          +     +G 
Sbjct: 26  MTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLP----------VLHPFSAG- 74

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
                      L+   Y     L+ N+  I  H       D +    LD+++ P  AF E
Sbjct: 75  ----------NLLFLNYHPQSELVMNRLKI--HEPKLDVRDVLPLSRLDVLITPLVAFDE 122

Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKT--IGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
            G+R+G G G+YD  L   +    H KT  +G A  CQ+VE LP+ + D+PL  V+ P
Sbjct: 123 YGQRLGMGGGFYDRTLQNWQ----HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTP 176

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + +P    +  +++++  D E+ T+ +I+ +  +GK  ++P          +     +G 
Sbjct: 26  MTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLP----------VLHPFSAG- 74

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
                      L+   Y     L+ N+  I  H       D +    LD+++ P  AF E
Sbjct: 75  ----------NLLFLNYHPQSELVMNRLKI--HEPKLDVRDVLPLSRLDVLITPLVAFDE 122

Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKT--IGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
            G+R+G G G+YD  L   +    H KT  +G A  CQ+VE LP+ + D+PL  V+ P
Sbjct: 123 YGQRLGMGGGFYDRTLQNWQ----HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTP 176

Escherichia coli O157:H7 (taxid: 83334)

>sp|P44905|Y858_HAEIN Uncharacterized protein HI_0858 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0858 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 87  QSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRV 146
           Q+K I++Y   D EIST+ +IQ +    K  ++P        +  F + +          
Sbjct: 44  QAKNIALYFSFDGEISTKALIQSLWMQNKNVYLP-------VLHPFTKHY---------- 86

Query: 147 VLRELVLHRYEDLDNLIKNKENILQHSQTEP---TEDAMKTGGLDLVVVPGRAFTETGKR 203
               L+  RY     + +N+  I      EP    ++ +    LD++  P  AF + G R
Sbjct: 87  ----LLFLRYLPDTPMKQNQFGIW-----EPKLNVQNVLPLNELDILFTPLVAFDKKGNR 137

Query: 204 MGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPL 249
           +G G G+YD  L   +  S     +GLA+ CQ VE+LP    DVPL
Sbjct: 138 LGMGGGFYDRTLQNWQNKS--FIPVGLAYQCQQVENLPTEHWDVPL 181

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 25/175 (14%)

Query: 88  SKRISIYVDRDD-EISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRV 146
           S+R++ Y+  D  E++T +II+++   G+E F+PR   T  + + F+             
Sbjct: 43  SRRVACYMSMDKGEVTTGEIIKNLFQDGQEVFLPRCTHTSES-KHFK------------- 88

Query: 147 VLRE-----LVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAF-TET 200
            LRE     L+ HR   L  ++++ +    +   EP     ++  LD+V+VPG AF  +T
Sbjct: 89  -LREDHHPHLIFHRMSSL-KMVRDLKPQGPYQLKEPEPHIEESDILDVVLVPGVAFDIKT 146

Query: 201 GKRMGRGKGYYDTYLSELKRISPHCK--TIGLAFSCQMVEDLPMSDHDVPLDYVI 253
           G RMG G GYYD +    K +    K   +GL    Q+   +P+  HD  +D ++
Sbjct: 147 GARMGHGAGYYDDFFQRYKILHEGQKPLLVGLCLMEQVASPIPLEKHDYSMDCIV 201

Utilizes 5-formyltetrahydrofolate (folinic acid) as substrate in an alternative way of folate biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P54491|YQGN_BACSU Uncharacterized protein YqgN OS=Bacillus subtilis (strain 168) GN=yqgN PE=1 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 33/173 (19%)

Query: 83  PVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRY--DKTEMTMRIFRQTWSGEA 140
           P ++ +  I++ + R  EI TR +I+     GK+  IP+   D  +M  R ++     E 
Sbjct: 36  PEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDTKKMQFRTYQTDDQLET 95

Query: 141 TLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTET 200
                  L E V+ + ++++                P++       +DL++VPG  F   
Sbjct: 96  VYAG---LLEPVIEKTKEVN----------------PSQ-------IDLMIVPGVCFDVN 129

Query: 201 GKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
           G R+G G GYYD YLSE +      KT+ L   CQ+   +P   HD+P+  +I
Sbjct: 130 GFRVGFGGGYYDRYLSEYEG-----KTVSLLLECQLFAHVPRLPHDIPVHKLI 177

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 101 ISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLD 160
           + + K I   CS   E      D   + ++++RQ ++    + +    + L   +Y    
Sbjct: 42  LDSVKNIAIFCSFDGEI-----DTYPLILKLWRQNYNVYLPIINYNYKKILGFMKYLPNT 96

Query: 161 NLIKNKENILQHSQTEPTED---AMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSE 217
           +LIKN+ NIL     EP  D    +++  LD++ VP  AF E G R+G G G+YD  L  
Sbjct: 97  SLIKNRFNIL-----EPVFDRKNFIQSDDLDIMFVPLVAFDEFGYRLGMGGGFYDRILIN 151

Query: 218 LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
              I      IGLAF CQ  +++ +   DV L  +I P
Sbjct: 152 YD-IKKSFFPIGLAFDCQFSKNINIKYWDVALPVIITP 188

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
350537387	196	uncharacterized protein LOC100163564 [Ac	0.602	0.795	0.424	2e-33
291241579	200	PREDICTED: 5, 10-methenyltetrahydrofolat	0.594	0.77	0.426	5e-31
346473167	175	hypothetical protein [Amblyomma maculatu	0.606	0.897	0.429	5e-30
270009620	195	hypothetical protein TcasGA2_TC008903 [T	0.594	0.789	0.394	8e-29
321478824	199	hypothetical protein DAPPUDRAFT_187016 [	0.602	0.783	0.365	3e-27
449281237	162	5-formyltetrahydrofolate cyclo-ligase, p	0.602	0.962	0.395	9e-27
189239434	196	PREDICTED: similar to 5,10-methenyltetra	0.594	0.785	0.392	1e-26
196001843	201	hypothetical protein TRIADDRAFT_54064 [T	0.613	0.791	0.392	2e-26
260830057	1033	hypothetical protein BRAFLDRAFT_124402 [	0.575	0.144	0.403	2e-26
332374448	195	unknown [Dendroctonus ponderosae]	0.575	0.764	0.393	5e-26

>gi|350537387|ref|NP_001233100.1| uncharacterized protein LOC100163564 [Acyrthosiphon pisum] gi|239790866|dbj|BAH71967.1| ACYPI004642 [Acyrthosiphon pisum]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 23/179 (12%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            L HPVY +S R+SIY+  D E+ T  I+++I  S K CFIP+Y+K+EM M         
Sbjct: 39  ILSHPVYTRSNRVSIYLSMDSEVQTNSIVENIFDSEKICFIPKYNKSEMLM--------- 89

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                       + +   ++L++L K   NI Q +  +  EDA+ TGGLDL++VPG  FT
Sbjct: 90  ------------VKIKSIDELNSLPKTSWNISQPADDDVREDALTTGGLDLIIVPGLGFT 137

Query: 199 ETGKRMGRGKGYYDTYLSELKRISP--HCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
             GKR+GRGKGYYD  ++E K+  P  + KTIGLAFS Q+ +D+PMS  D  +D+++ P
Sbjct: 138 MDGKRLGRGKGYYDQCITEYKKKYPFNNLKTIGLAFSEQICDDIPMSQQDSLIDFIVCP 196

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291241579|ref|XP_002740689.1| PREDICTED: 5, 10-methenyltetrahydrofolate synthetase-like [Saccoglossus kowalevskii]

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 103/176 (58%), Gaps = 22/176 (12%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            +KHP YE S+RIS+Y+   +E++T  I+QHI  S K CF+P+Y    M M         
Sbjct: 38  LIKHPKYEASRRISVYLSMTEEVNTLGILQHIFDSNKVCFVPQYIGNNMDM--------- 88

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                       L L+  +D D L K K NI Q + ++  E+A+ TGGLD++++PG  FT
Sbjct: 89  ------------LKLNSMQDYDALPKTKWNIKQPTDSDNREEALSTGGLDMIIIPGLGFT 136

Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCK-TIGLAFSCQMVEDLPMSDHDVPLDYVI 253
             GKR+GRGKGYYD Y S     SP    TI LAF  Q+ +D+P+SDHDV +D V+
Sbjct: 137 RDGKRLGRGKGYYDNYQSRCVDHSPSKPYTIALAFQEQICDDIPVSDHDVNIDEVL 192

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|346473167|gb|AEO36428.1| hypothetical protein [Amblyomma maculatum]

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 100/177 (56%), Gaps = 20/177 (11%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
           FL H  Y+ SKRISI+V  + EI T  IIQ I   GKECFIP+YD     M + +     
Sbjct: 17  FLNHCRYKASKRISIFVSMETEICTEPIIQQIIKDGKECFIPKYDDKSRQMDMVK----- 71

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                         L   E+L+ L   K  I QH+  +P E+A+ TGGLDL+VVP  AFT
Sbjct: 72  --------------LSSLEELEQLPLTKWRIKQHADFDPREEALMTGGLDLLVVPCVAFT 117

Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCK-TIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
             G R+G GKGYYD Y +   ++  H   T+GL FS Q+V  +P+ +HD+ +D VIH
Sbjct: 118 PQGARLGHGKGYYDIYYARCLKLQAHKPYTLGLCFSQQIVPSVPLDEHDMVVDEVIH 174

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009620|gb|EFA06068.1| hypothetical protein TcasGA2_TC008903 [Tribolium castaneum]

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 26/180 (14%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            L  P +++SKR+S Y+  D+EI T  I++ I  +GKECF+PRY K  M M         
Sbjct: 38  LLNLPSFQKSKRVSTYLSIDNEIDTEPIVRKIFETGKECFVPRYSKAGMEM--------- 88

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                       + +H Y+D + L      I Q    E  EDA+KTGGLD VVVPG  FT
Sbjct: 89  ------------VKIHSYQDWETLPVTSWGIKQPGLKEQREDALKTGGLDFVVVPGVGFT 136

Query: 199 ETGKRMGRGKGYYDTYLSELKR---ISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
             G R+G G GYYD Y+++L++   + P    +GLAF  Q+ +DLP+++ DV +D V+ P
Sbjct: 137 AKGLRLGHGGGYYDRYMADLRKNQDVPPAL--VGLAFKEQICDDLPVTELDVQIDLVLFP 194

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478824|gb|EFX89781.1| hypothetical protein DAPPUDRAFT_187016 [Daphnia pulex]

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 102/175 (58%), Gaps = 19/175 (10%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           L HP Y  S+ I++++  +DEI T  I++ I  SGK CFIPRY +++  M + R      
Sbjct: 38  LAHPKYASSRGIAVFLSMNDEIDTSNIVRDIFDSGKHCFIPRYQESDGHMTMIR------ 91

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
                        +H YE+L++L + K NI Q S+ +  ED ++TGGLDL++ PG AFT 
Sbjct: 92  -------------MHTYEELESLPRTKWNIPQPSKIDQREDCLQTGGLDLILTPGLAFTN 138

Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
           +G R+GRGKG+YD +L     +      IGLA +  +V+ +P + +D  +D +++
Sbjct: 139 SGHRLGRGKGFYDKFLITYSSVYKPPYLIGLALTPSIVDSIPCTLNDFKMDEILY 193

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449281237|gb|EMC88358.1| 5-formyltetrahydrofolate cyclo-ligase, partial [Columba livia]

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 99/177 (55%), Gaps = 21/177 (11%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + HP Y++SKRI+IY+   DEI T +I++ I   GKECFIPRYD     M + +      
Sbjct: 2   IGHPKYQESKRIAIYLSTPDEIQTEEIMKDIFKQGKECFIPRYDPLGTHMDMLK------ 55

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPT-EDAMKTGGLDLVVVPGRAFT 198
                        +   ED+ +      NILQ S  + T E+A+  GGLDL+ +PG  F 
Sbjct: 56  -------------ISSAEDISSFTLTSWNILQPSDDDSTREEALAGGGLDLIFMPGLGFD 102

Query: 199 ETGKRMGRGKGYYDTYLSE-LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
           + G R+GRGKGYYD YL   +K  S    TI LAF  Q+ E +P ++HD+ +D V++
Sbjct: 103 KKGNRLGRGKGYYDIYLERCMKHPSGKPYTIALAFKEQICESVPAAEHDIQIDEVLY 159

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|189239434|ref|XP_974831.2| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) [Tribolium castaneum]

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 103/181 (56%), Gaps = 27/181 (14%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            L  P +++SKR+S Y+  D+EI T  I++ I  +GKECF+PRY                
Sbjct: 38  LLNLPSFQKSKRVSTYLSIDNEIDTEPIVRKIFETGKECFVPRY---------------- 81

Query: 139 EATLRSRVVLRELV-LHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAF 197
              L + +   E+V +H Y+D + L      I Q    E  EDA+KTGGLD VVVPG  F
Sbjct: 82  --VLNAGM---EMVKIHSYQDWETLPVTSWGIKQPGLKEQREDALKTGGLDFVVVPGVGF 136

Query: 198 TETGKRMGRGKGYYDTYLSELKR---ISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
           T  G R+G G GYYD Y+++L++   + P    +GLAF  Q+ +DLP+++ DV +D V+ 
Sbjct: 137 TAKGLRLGHGGGYYDRYMADLRKNQDVPPAL--VGLAFKEQICDDLPVTELDVQIDLVLF 194

Query: 255 P 255
           P
Sbjct: 195 P 195

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196001843|ref|XP_002110789.1| hypothetical protein TRIADDRAFT_54064 [Trichoplax adhaerens] gi|190586740|gb|EDV26793.1| hypothetical protein TRIADDRAFT_54064 [Trichoplax adhaerens]

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 98/181 (54%), Gaps = 22/181 (12%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            +  P Y++SKR+ +Y+  DDEI T  I++ I S+ K C+IP Y    M M         
Sbjct: 41  LMATPEYQKSKRVCVYLHMDDEIRTTAILKDIFSTNKICYIPHYYGPIMDM--------- 91

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                       + LH +ED DNL     NI Q +  E  E+A+  GGLDL++VPG  FT
Sbjct: 92  ------------VRLHSWEDYDNLPLTSWNIKQPADNEQRENAISGGGLDLIIVPGLGFT 139

Query: 199 ETGKRMGRGKGYYDTYLSEL-KRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLS 257
             G R+GRGKGYYD YL +  +++     TI LAF+ Q+ + +P  DHD  +D VI   S
Sbjct: 140 MAGDRLGRGKGYYDGYLQKYEEKLHKRPITIALAFASQICDTIPTDDHDRRIDMVISGNS 199

Query: 258 T 258
           T
Sbjct: 200 T 200

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|260830057|ref|XP_002609978.1| hypothetical protein BRAFLDRAFT_124402 [Branchiostoma floridae] gi|229295340|gb|EEN65988.1| hypothetical protein BRAFLDRAFT_124402 [Branchiostoma floridae]

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 27/176 (15%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRY--DKTEMTMRIFRQTW 136
            + +P Y+ SK++S+Y+   +E+ST  I++HI  SGK  FIPRY  DK +M +R+F Q  
Sbjct: 41  LISNPKYQASKQVSLYLSFSNEVSTEGILRHIFQSGKRVFIPRYVGDKMDM-LRLFSQ-- 97

Query: 137 SGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPT-EDAMKTGGLDLVVVPGR 195
                               ED D+L   K NI Q    + T +DA+  GGLDL+++PG 
Sbjct: 98  --------------------EDYDSLPLTKWNIKQPPDDDNTRDDALFAGGLDLIIMPGL 137

Query: 196 AFTETGKRMGRGKGYYDTYLSELKRI-SPHCKTIGLAFSCQMVEDLPMSDHDVPLD 250
            FT  G R+GRGKGYYD+YL +   + S    TI LAF  QM + +P+S+HD+ +D
Sbjct: 138 GFTPEGHRLGRGKGYYDSYLKKCAVLPSGQPYTIALAFREQMCDHIPVSEHDMTVD 193

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332374448|gb|AEE62365.1| unknown [Dendroctonus ponderosae]

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 94/173 (54%), Gaps = 24/173 (13%)

Query: 84  VYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLR 143
            ++ SKR+S+++    EI T  I++ I   GK+CF+PRY K  M M              
Sbjct: 43  AFKSSKRVSVFLSTATEIDTEPIVRKIFQDGKQCFVPRYSKAGMQM-------------- 88

Query: 144 SRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKR 203
                  + L   ED  NL   K NI Q    +  EDA +TGGLDL++ PG AFT TG R
Sbjct: 89  -------VKLASMEDWTNLPLTKWNIKQPLLADHREDAFETGGLDLIICPGVAFTRTGDR 141

Query: 204 MGRGKGYYDTYLSELKRISPHCK--TIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
           +G G GYYD Y+ +L+ I   C+  T+ LAF  Q+VE LP+   DV +D V++
Sbjct: 142 LGHGGGYYDAYIKKLQEIQ-ECRPATVALAFKEQVVERLPLGPTDVTIDLVLY 193

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
UNIPROTKB|F1NWN8	201	MTHFS "Uncharacterized protein	0.378	0.487	0.44	9.6e-29
RGD|1306876	203	Mthfs "5,10-methenyltetrahydro	0.370	0.472	0.405	6.6e-28
MGI|MGI:1340032	203	Mthfs "5, 10-methenyltetrahydr	0.370	0.472	0.405	8.4e-28
UNIPROTKB|P80405	201	MTHFS "5-formyltetrahydrofolat	0.378	0.487	0.424	1.4e-27
UNIPROTKB|E2RR20	203	MTHFS "Uncharacterized protein	0.386	0.492	0.390	9.4e-27
UNIPROTKB|H3BQ75	179	MTHFS "5-formyltetrahydrofolat	0.370	0.536	0.386	2.5e-26
UNIPROTKB|P49914	203	MTHFS "5-formyltetrahydrofolat	0.370	0.472	0.386	2.5e-26
UNIPROTKB|Q1RMT3	201	MTHFS "5,10-methenyltetrahydro	0.370	0.477	0.396	4e-26
FB|FBgn0085453	201	CG34424 [Drosophila melanogast	0.374	0.482	0.470	7.6e-22
WB|WBGene00013708	206	Y106G6E.4 [Caenorhabditis eleg	0.366	0.461	0.402	6.9e-21

UNIPROTKB|F1NWN8 MTHFS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 209 (78.6 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 44/100 (44%), Positives = 64/100 (64%)

Query:   157 EDLDNLIKNKENILQHSQTEPT-EDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYL 215
             ED+ +L     NILQ S  +   E+A+  GGLDL+ +PG  F + G R+GRGKGYYDTYL
Sbjct:    99 EDISSLTLTSWNILQPSDDDSAREEALAGGGLDLIFMPGLGFDKKGNRLGRGKGYYDTYL 158

Query:   216 SE-LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
                +K  S    TI LAF  Q+ E +P++++DV +D +++
Sbjct:   159 GRCMKHPSGKPYTIALAFREQICESVPVTENDVQVDEILY 198

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

RGD|1306876 Mthfs "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 41/101 (40%), Positives = 64/101 (63%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F + G R+GRGKGYYDTYL 
Sbjct:    99 EEVALLPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFDKDGNRLGRGKGYYDTYLK 158

Query:   217 EL---KRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
                  +++ P+  T+ LAF  Q+   +P+ +HD+ +D V++
Sbjct:   159 RCVQHQKVKPY--TLALAFREQICPQIPVDEHDMKVDEVLY 197

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

MGI|MGI:1340032 Mthfs "5, 10-methenyltetrahydrofolate synthetase" [Mus musculus (taxid:10090)]

 Score = 203 (76.5 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 41/101 (40%), Positives = 63/101 (62%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F + G R+GRGKGYYDTYL 
Sbjct:    99 EEIALLPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFDKDGNRLGRGKGYYDTYLK 158

Query:   217 EL---KRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
                  + + P+  T+ LAF  Q+   +P+ +HD+ +D V++
Sbjct:   159 RCVQHQEVKPY--TMALAFKEQICPQIPVDEHDMKVDEVLY 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

UNIPROTKB|P80405 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 207 (77.9 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 42/99 (42%), Positives = 63/99 (63%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             +++ +L K   NI Q S+++  E+A+ TGGLDL+ +PG  F   G R+GRG+GYYDTYL 
Sbjct:    99 DEISSLPKTSWNIHQPSESDTREEALATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQ 158

Query:   217 E-LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
               L++      TI LAF  Q+   +P+ D DV +D V++
Sbjct:   159 RCLQQQGAKPYTIALAFREQICPQVPVDDTDVSVDEVLY 197

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISS

UNIPROTKB|E2RR20 MTHFS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 41/105 (39%), Positives = 67/105 (63%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             E++ +L K   NI Q  + E  E+A+ TGGLDL+ +PG  F + G R+GRG+GYYD YL 
Sbjct:   100 EEISSLPKTSWNIHQPGEDEVREEALSTGGLDLIFMPGLGFDKHGNRLGRGRGYYDAYLR 159

Query:   217 E-LKR--ISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLST 258
               L++  + P+  T+ LAF  Q+   +P+ ++D+ +D V++  S+
Sbjct:   160 RCLQQQDVPPY--TMALAFREQICPQVPVDENDMKVDEVLYEESS 202

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H3BQ75 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 39/101 (38%), Positives = 63/101 (62%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F + G R+GRGKGYYD YL 
Sbjct:    75 EEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLK 134

Query:   217 EL---KRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
                  + + P+  T+ LAF  Q+   +P++++D+ +D V++
Sbjct:   135 RCLQHQEVKPY--TLALAFKEQICLQVPVNENDMKVDEVLY 173

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

UNIPROTKB|P49914 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 39/101 (38%), Positives = 63/101 (62%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F + G R+GRGKGYYD YL 
Sbjct:    99 EEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLK 158

Query:   217 EL---KRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
                  + + P+  T+ LAF  Q+   +P++++D+ +D V++
Sbjct:   159 RCLQHQEVKPY--TLALAFKEQICLQVPVNENDMKVDEVLY 197

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0015942 "formate metabolic process" evidence=NAS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IDA;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q1RMT3 MTHFS "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 40/101 (39%), Positives = 63/101 (62%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLS 216
             E++  L +   NI Q  + E  E+A+ TGGLDL+ VPG  F +   R+GRGKGYYD YL 
Sbjct:   100 EEIALLPRTSWNIQQPGEDEVLEEALSTGGLDLIFVPGLGFDKQSNRLGRGKGYYDAYLK 159

Query:   217 ---ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
                + + + P+  T+ LAF  Q+   +P++++DV +D V++
Sbjct:   160 RCLQSQDVKPY--TLALAFKEQICLQVPVNENDVKVDEVLY 198

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0085453 CG34424 [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
 Identities = 48/102 (47%), Positives = 58/102 (56%)

Query:   157 EDLDNLIKNKENILQHSQTEPTEDAMKTG-GLDLVVVPGRAFTETGKRMGRGKGYYDTYL 215
             E+ ++L   K NI Q    E  EDAM  G G+DL +VPG AFT  G RMG G GYYD +L
Sbjct:    97 EEYESLPLTKWNIKQPDFKEAREDAMTNGHGIDLFIVPGVAFTRCGARMGHGMGYYDKFL 156

Query:   216 SELKRISPHCKTIGLAFSC--QMV--EDLPMSDHDVPLDYVI 253
              +     PH K   +A S   Q+V  E+LPM  HDV L  VI
Sbjct:   157 KQHAEKYPHKKISLMALSLNEQIVSNEELPMESHDVRLHSVI 198

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

WB|WBGene00013708 Y106G6E.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 155 (59.6 bits), Expect = 6.9e-21, Sum P(2) = 6.9e-21
 Identities = 39/97 (40%), Positives = 52/97 (53%)

Query:   160 DNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELK 219
             DNL      I Q       +   +TG LDL++ PG AF+  G R G GKGYYD + S   
Sbjct:   100 DNLPSTLWGIRQPEPKWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHH 159

Query:   220 RISPHC--KTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
             +  P    K IGLA   Q++  +P+S+ DV LD VI+
Sbjct:   160 KHFPENSPKKIGLALREQIIGTIPISETDVELDEVIY 196

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P80405	MTHFS_RABIT	6, ., 3, ., 3, ., 2	0.375	0.6023	0.7761	yes	N/A
P49914	MTHFS_HUMAN	6, ., 3, ., 3, ., 2	0.3571	0.6100	0.7783	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	259
TIGR02727	179	TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola	9e-38
pfam01812	182	pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolat	1e-30
PLN02812	211	PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo	4e-30
COG0212	191	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-l	4e-28
PRK10333	182	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo	8e-13
PLN02812	211	PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo	1e-06
TIGR02727	179	TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola	2e-04

>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase

 Score =  130 bits (329), Expect = 9e-38
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 28/174 (16%)

Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           L    ++ +K I++Y+    E+ TR +I+ +   GK   +P+ D     M +F + WS E
Sbjct: 32  LALIEWKNAKTIALYLPLRGEVDTRPLIEQLLKEGKRVALPKVDGDGKEM-LFFRIWSPE 90

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
             L                     K    IL+       E+ +    +DL++VPG AF  
Sbjct: 91  QPL--------------------TKGPFGILE--PVGDLEEPVPPDEIDLIIVPGVAFDR 128

Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
            G R+G G GYYD +L+ LK I     TIGLAF  Q+V++LP   HDVP+D +I
Sbjct: 129 RGYRLGYGGGYYDRFLARLKGI-----TIGLAFDFQLVDELPREPHDVPVDAII 177

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism [Central intermediary metabolism, One-carbon metabolism]. Length = 179

>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family

 Score =  112 bits (281), Expect = 1e-30
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 25/174 (14%)

Query: 82  HPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEAT 141
               +++KR+++YV    EI TR++I+ +   GK   +PR       +            
Sbjct: 34  FVGAQKAKRVALYVSVKGEIDTRELIELLLEEGKLVLLPRPRPDSGLVVRIT-------- 85

Query: 142 LRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 201
                         Y     L      + +  + E  E A+    +DLV+VPG AF   G
Sbjct: 86  -------------PYYPETGLPSGPYGLPEPIEEEQRELAL--NQIDLVLVPGVAFDRQG 130

Query: 202 KRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
            R+GRG GYYD YL+ L+   P   T+GLA+  Q+VE LP   HDVP+D ++  
Sbjct: 131 YRLGRGGGYYDRYLARLQGHGP--LTVGLAYDEQLVERLPQEPHDVPVDEIVTE 182

5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyzes the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin. Length = 182

>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase

 Score =  111 bits (280), Expect = 4e-30
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 42/191 (21%)

Query: 83  PVYEQSKRISIYVD--RDDEISTRKIIQHICSSG-KECFIPRYDKTEMTMRIFRQTWSGE 139
           P ++ SKR+  YV   +  E+ T KI+  I  +  K  ++PR +     MR+   T    
Sbjct: 41  PWFKSSKRLCAYVSCAKLREVDTSKILSEILQNPDKRLYVPRVEDKNSNMRMLHIT---- 96

Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPT----EDAMKTGG-LDLVVVPG 194
                            +DL   + N  NIL+ +  +      ED ++    LDL+++PG
Sbjct: 97  --------------DMADDL---VANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPG 139

Query: 195 RAFTETGKRMGRGKGYYDTYLSELKRISPHCKT--------IGLAFSCQMVED--LPMSD 244
            AF  +G+R+GRG GYYDT+LS+ + +    K         + L++S Q++++  +P+ +
Sbjct: 140 LAFDRSGRRLGRGGGYYDTFLSKYQEL---AKEKGWKQPLLVALSYSPQILDEGSVPVDE 196

Query: 245 HDVPLDYVIHP 255
            DV +D ++ P
Sbjct: 197 TDVLVDALVTP 207

Length = 211

>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

 Score =  105 bits (265), Expect = 4e-28
 Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
                  +++K I++YV  + EI TR +I+     GK   +P+    ++    +      
Sbjct: 35  LASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGKRLLLPKLRDYKLLFLRYIPDPLQ 94

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
               ++R  + E   +  +     I                        DLV+VP  AF 
Sbjct: 95  PLI-KNRFGILEPGEYGRKIPPPEI------------------------DLVLVPLVAFD 129

Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
           + G R+G G GYYD YL+ L+       T+G+A+ CQ+V+ LP   HDVPLD ++
Sbjct: 130 KQGYRLGYGGGYYDRYLANLRGRKT--PTVGIAYDCQLVDHLPREPHDVPLDAIV 182

Length = 191

>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

 Score = 64.6 bits (157), Expect = 8e-13
 Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 38/203 (18%)

Query: 58  RAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKEC 117
           RA T   ++             + +P    +  +++++  D E+ T+ +I+ +  +GK  
Sbjct: 7   RALTPEQQQE---MGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRV 63

Query: 118 FIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEP 177
           ++P                     L        L L+ Y     L+ N+  I      EP
Sbjct: 64  YLP--------------------VLHPFSAGNLLFLN-YHPQSELVMNRLKI-----HEP 97

Query: 178 ---TEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELK--RISPHCKTIGLAF 232
                D +    LD+++ P  AF E G+R+G G G+YD  L   +  +  P    +G A 
Sbjct: 98  KLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQP----VGYAH 153

Query: 233 SCQMVEDLPMSDHDVPLDYVIHP 255
            CQ+VE LP+ + D+PL  V+ P
Sbjct: 154 DCQLVEKLPVEEWDIPLPAVVTP 176

Length = 182

>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 8   KTEMTMLKL-HRYEDLDNLIKNKENILQHSQTEPT----EDAMKTGG-LDLVVVPGRAFT 61
            + M ML +    +DL   + N  NIL+ +  +      ED ++    LDL+++PG AF 
Sbjct: 87  NSNMRMLHITDMADDL---VANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFD 143

Query: 62  ETGKRC 67
            +G+R 
Sbjct: 144 RSGRRL 149

Length = 211

>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 7   DKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKR 66
           D     ML    +     L K    IL+       E+ +    +DL++VPG AF   G R
Sbjct: 75  DGDGKEMLFFRIWSPEQPLTKGPFGILE--PVGDLEEPVPPDEIDLIIVPGVAFDRRGYR 132

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism [Central intermediary metabolism, One-carbon metabolism]. Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PRK10333	182	5-formyltetrahydrofolate cyclo-ligase family prote	100.0
PF01812	186	5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig	100.0
PLN02812	211	5-formyltetrahydrofolate cyclo-ligase	100.0
TIGR02727	181	MTHFS_bact 5,10-methenyltetrahydrofolate synthetas	100.0
KOG3093|consensus	200		100.0
COG0212	191	5-formyltetrahydrofolate cyclo-ligase [Coenzyme me	100.0
PRK10333	182	5-formyltetrahydrofolate cyclo-ligase family prote	99.65
KOG4410|consensus	396		99.65
PF01812	186	5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig	99.56
TIGR02727	181	MTHFS_bact 5,10-methenyltetrahydrofolate synthetas	99.54
PLN02812	211	5-formyltetrahydrofolate cyclo-ligase	99.51
KOG3093|consensus	200		99.44
COG0212	191	5-formyltetrahydrofolate cyclo-ligase [Coenzyme me	99.37

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

Probab=100.00  E-value=7.1e-48  Score=325.37  Aligned_cols=160  Identities=25%  Similarity=0.511  Sum_probs=138.3

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecC---Cceeeeecccccccchhhccee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKT---EMTMRIFRQTWSGEATLRSRVV  147 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~---~~~~~~~~~~~~~~~~~~~~~~  147 (259)
                      +|..++++++++..++++++|++|+|+++||||.+|++.+++.||+|+||++...   .|.|                  
T Consensus        17 ~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~v~lP~v~~~~~~~m~f------------------   78 (182)
T PRK10333         17 MGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLF------------------   78 (182)
T ss_pred             HHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEeEEecCCCCEEEE------------------
Confidence            4899999999988889999999999999999999999999999999999999753   2555                  


Q ss_pred             eeeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccE
Q psy17389        148 LRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKT  227 (259)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~  227 (259)
                         +.   +.+.+.|.+|+|||+||..+...  ....+.+|+|||||||||++|+|||||||||||||++++..  ++.+
T Consensus        79 ---~~---~~~~~~l~~~~~gI~EP~~~~~~--~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~--~~~~  148 (182)
T PRK10333         79 ---LN---YHPQSELVMNRLKIHEPKLDVRD--VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHY--KTQP  148 (182)
T ss_pred             ---EE---CCCCCccccCCCCCCCCCccccc--cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhccc--CCcE
Confidence               33   33345689999999999754321  23456899999999999999999999999999999987542  2468


Q ss_pred             EEEecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        228 IGLAFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       228 igl~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      ||+||++|+++++|+|+||++||+||||+|+
T Consensus       149 igla~~~Q~~~~ip~e~hD~~ld~iiTe~~~  179 (182)
T PRK10333        149 VGYAHDCQLVEKLPVEEWDIPLPAVVTPSKV  179 (182)
T ss_pred             EEEeeeeEEeCCcCCCcccCcCCEEEeCCeE
Confidence            9999999999999999999999999999985

>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6

Probab=100.00  E-value=7.7e-46  Score=313.61  Aligned_cols=162  Identities=35%  Similarity=0.620  Sum_probs=120.6

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCC--ceeeeecccccccchhhcceee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTE--MTMRIFRQTWSGEATLRSRVVL  148 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  148 (259)
                      +|..+++++.++..+.++++|++|+|+.+|+||.+|++.++++||+|++|++..+.  |.+                   
T Consensus        23 ~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~-------------------   83 (186)
T PF01812_consen   23 ASQAICERLLALPEYRKAQTIALYLPMGGEVDTRPLIERALKDGKRVYLPRVHPDDGRMRM-------------------   83 (186)
T ss_dssp             HHHHHHHHHHCCHHHHCTSEEEE----TTS---HHHHHHHHHTTCEEEEEEEETTCTEECE-------------------
T ss_pred             HHHHHHHHHHhChhhhhhceEEEccCCCCCCCHHHHHHHHHHcCCeEecceecccccccce-------------------
Confidence            38899999999988889999999999999999999999999999999999998776  333                   


Q ss_pred             eeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEE
Q psy17389        149 RELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTI  228 (259)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~i  228 (259)
                        +.+..+...+.+++|+|||+||..+....  .....+|+|||||||||++|+|||||||||||||+.+.....++.+|
T Consensus        84 --~~~~~~~~~~~l~~~~~gI~EP~~~~~~~--~~~~~idlvlVP~lafd~~G~RLG~GgGyYDR~L~~~~~~~~~~~~i  159 (186)
T PF01812_consen   84 --MEFRRYDSDDPLEKGRFGIPEPDGESPPP--DPPEEIDLVLVPGLAFDRNGNRLGYGGGYYDRFLARLPPGRKKPLKI  159 (186)
T ss_dssp             --EEEEEESSCGCCEECETTCEEEESTCSEE--GGGGG-SEEEEE-SEEETTSBEE-SSSTHHHHHHHHHTS-SS--EEE
T ss_pred             --eEEeecCCcccccccccCccCCccccccc--cccccCCEEEeCcEEECCCCCeEecCCCHHHhHHHhhhcccCCCeEE
Confidence              33334455677899999999998765321  11237999999999999999999999999999999987522346899


Q ss_pred             EEecCcccccCCCCCCCCccCCEEEcC
Q psy17389        229 GLAFSCQMVEDLPMSDHDVPLDYVIHP  255 (259)
Q Consensus       229 gl~~~~Q~~~~ip~e~~D~~ld~iiTe  255 (259)
                      ||||++|+++++|+|+||++||+||||
T Consensus       160 gl~~~~q~~~~iP~e~hD~~ld~iiTe  186 (186)
T PF01812_consen  160 GLAFDFQIVDDIPVEPHDIPLDAIITE  186 (186)
T ss_dssp             EEE-GGGEES-----TTS-B-SEEEET
T ss_pred             EEeehhheeCCCCCCcccccCCEEEcC
Confidence            999999999999999999999999998

3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....

>PLN02812 5-formyltetrahydrofolate cyclo-ligase

Probab=100.00  E-value=9.6e-45  Score=312.94  Aligned_cols=165  Identities=32%  Similarity=0.585  Sum_probs=137.7

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCC--CCChHHHHHHHHhCC-CEEEEceeecCC--ceeeeecccccccchhhcc
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDD--EISTRKIIQHICSSG-KECFIPRYDKTE--MTMRIFRQTWSGEATLRSR  145 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~--Ev~t~~li~~~~~~g-k~v~lP~~~~~~--~~~~~~~~~~~~~~~~~~~  145 (259)
                      .|..++++++++..++++++|++|+|+.+  ||||.+|++++++.| |+|+||++...+  |.|                
T Consensus        29 ~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~g~k~v~lP~~~~~~~~m~f----------------   92 (211)
T PLN02812         29 EDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQNPDKRLYVPRVEDKNSNMRM----------------   92 (211)
T ss_pred             HHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHHcCCcEEEEeEEecCCCeEEE----------------
Confidence            48999999999888889999999999998  999999999999999 999999997543  666                


Q ss_pred             eeeeeEEEeccCCccccccCcCccCCCCCCCCCc----cc-ccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccc
Q psy17389        146 VVLRELVLHRYEDLDNLIKNKENILQHSQTEPTE----DA-MKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKR  220 (259)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~----~~-~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~  220 (259)
                           +.+.+..  +.|..|+|||+||.......    +. ....++|||||||||||++|+|||||||||||||++++.
T Consensus        93 -----~~~~~~~--~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~GgGyYDR~L~~~~~  165 (211)
T PLN02812         93 -----LHITDMA--DDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQE  165 (211)
T ss_pred             -----EEeCCcc--ccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCCCchHHHHHHHhhh
Confidence                 4443321  46889999999998643210    01 135689999999999999999999999999999998741


Q ss_pred             ----cC-CCccEEEEecCccccc--CCCCCCCCccCCEEEcCCCC
Q psy17389        221 ----IS-PHCKTIGLAFSCQMVE--DLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       221 ----~~-~~~~~igl~~~~Q~~~--~ip~e~~D~~ld~iiTe~~~  258 (259)
                          .+ .++.+|||||++|+++  ++|+|+||++||+||||+|+
T Consensus       166 ~~~~~~~~~~~~igla~~~Q~~~~~~iP~e~hD~~ld~iiTe~~v  210 (211)
T PLN02812        166 LAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPSGV  210 (211)
T ss_pred             hhccccCCCceEEEEeeheeeECCCCCCCccccccCCEEEcCCcC
Confidence                11 1246899999999999  99999999999999999986

>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase

Probab=100.00  E-value=2.7e-44  Score=303.26  Aligned_cols=157  Identities=33%  Similarity=0.589  Sum_probs=133.3

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCC--ceeeeecccccccchhhcceee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTE--MTMRIFRQTWSGEATLRSRVVL  148 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  148 (259)
                      ++..+.++++++..++++++|++|+|+++|+||.+|++.+++.||+|+||++...+  |.+                   
T Consensus        23 ~~~~i~~~l~~~~~~~~~~~I~~Y~~~~~E~~t~~li~~~~~~~k~v~lP~~~~~~~~~~~-------------------   83 (181)
T TIGR02727        23 ASEAIAKRLLALIEWKNAKTIALYLPLRGEVDTRPLIEQLLKEGKRVALPKVDPDGKEMLF-------------------   83 (181)
T ss_pred             HHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEEEEecCCCceeE-------------------
Confidence            48889999998888889999999999999999999999999999999999997654  222                   


Q ss_pred             eeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEE
Q psy17389        149 RELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTI  228 (259)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~i  228 (259)
                        +  ..+...+.|..++|||+||..+..  ..+..+++|+|||||||||++|+|||||||||||||+.+..   .+.+|
T Consensus        84 --~--~~~~~~~~l~~~~~gi~eP~~~~~--~~~~~~~idlvivP~lafD~~G~RLG~GgGyYDR~L~~~~~---~~~~i  154 (181)
T TIGR02727        84 --F--RIWSPSDLLTKGKFGILEPPGDST--EPVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDRFLANLKG---KTVVV  154 (181)
T ss_pred             --E--EecCCCCccccCCCCCCCCCCccc--CcCCcccCCEEEeCceEEcCCCccccCCcchHHHHHHhccc---CCCEE
Confidence              1  112323468899999999985421  12345689999999999999999999999999999998754   24589


Q ss_pred             EEecCcccccCCCCCCCCccCCEEEcC
Q psy17389        229 GLAFSCQMVEDLPMSDHDVPLDYVIHP  255 (259)
Q Consensus       229 gl~~~~Q~~~~ip~e~~D~~ld~iiTe  255 (259)
                      ||||++|+++++|+|+||++||+||||
T Consensus       155 gv~~~~q~~~~lp~e~~Di~ld~iiTe  181 (181)
T TIGR02727       155 GLAFDFQLVDELPREPHDVPVDAIITE  181 (181)
T ss_pred             EEEecceeeCccCCCccCccCCEEeCC
Confidence            999999999999999999999999997

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.

>KOG3093|consensus

Probab=100.00  E-value=1.7e-43  Score=290.26  Aligned_cols=166  Identities=38%  Similarity=0.628  Sum_probs=149.1

Q ss_pred             hcccHHHHhhcccccccccceEEeeccCCC-CCChHHHHHHHHhCCCEEEEceeecC--Cceeeeecccccccchhhcce
Q psy17389         70 SFSWPYIGCFLKHPVYEQSKRISIYVDRDD-EISTRKIIQHICSSGKECFIPRYDKT--EMTMRIFRQTWSGEATLRSRV  146 (259)
Q Consensus        70 ~~s~~i~drll~~~~~~~a~~I~ly~s~~~-Ev~t~~li~~~~~~gk~v~lP~~~~~--~~~~~~~~~~~~~~~~~~~~~  146 (259)
                      ++|..+++++++++.|++++.|++|+|+++ ||+|..||+.+++.||.||+|++...  .|.+                 
T Consensus        29 rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK~vFiP~~~~~~s~m~M-----------------   91 (200)
T KOG3093|consen   29 RQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGKEVFIPRCTHTSSKMDM-----------------   91 (200)
T ss_pred             HHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCCeEEeeeeecCCCceeE-----------------
Confidence            569999999999999999999999999998 99999999999999999999999543  4777                 


Q ss_pred             eeeeEEEeccCCccccccCcCccCCCCCCCCCcccccCC-CCCEEEEcCceeeCCCCccccCCchhhhhhhhcccc--CC
Q psy17389        147 VLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTG-GLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRI--SP  223 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~-~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~--~~  223 (259)
                          +++...++++.++.++|||++|.+...+++.+.+. .+|||||||||||+.|.|||+|+||||+||++++..  +.
T Consensus        92 ----vr~~~~e~~~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivPGvAFd~~g~RlGhGkGYYD~flkry~~~~~~~  167 (200)
T KOG3093|consen   92 ----VRIDHMEELESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQ  167 (200)
T ss_pred             ----EEeCChHHHhhCcccccCCCCCCCCCchhhhccCCCcceEEEecccccchhhhhccCCcchHHHHHHHHHHhcccc
Confidence                67777777888999999999999877666666554 699999999999999999999999999999987643  23


Q ss_pred             CccEEEEecCcccccCCCCCCCCccCCEEEcCC
Q psy17389        224 HCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL  256 (259)
Q Consensus       224 ~~~~igl~~~~Q~~~~ip~e~~D~~ld~iiTe~  256 (259)
                      ++.+||||+.+|++.+||+++||+.+|.||||+
T Consensus       168 kp~~vgL~l~EQI~~~IPv~~~Dv~lD~vvt~~  200 (200)
T KOG3093|consen  168 KPLLVGLCLKEQILSEIPVEEHDVKLDAVVTED  200 (200)
T ss_pred             CchhhhhhhhHhhcccCCCCccceeeeEeecCC
Confidence            678999999999999999999999999999985

>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

Probab=100.00  E-value=1e-41  Score=289.78  Aligned_cols=160  Identities=33%  Similarity=0.542  Sum_probs=136.5

Q ss_pred             ccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeecccccccchhhcceeeeeE
Q psy17389         72 SWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLREL  151 (259)
Q Consensus        72 s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (259)
                      +..+++.+..+..+.++++|++|+|+.+|+||.++++.++++||+|++|++....+.|                     .
T Consensus        28 ~~~i~~~~~~~~~~~~~~~ia~y~~~~~E~~~~~l~~~~l~~gk~l~lP~~~~~~~~f---------------------~   86 (191)
T COG0212          28 DQRIAKLLASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGKRLLLPKLRDYKLLF---------------------L   86 (191)
T ss_pred             HHHHHHHHHhccccccccEEEEEeccCCCCCcHHHHHHHHHcCCEEEEeEEEcCccee---------------------E
Confidence            5568888888888889999999999999999999999999999999999997644555                     2


Q ss_pred             EEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEe
Q psy17389        152 VLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLA  231 (259)
Q Consensus       152 ~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~  231 (259)
                      .+.... ...+..+.|||.||.......   ....+|+||||+||||++|+|||||||||||||+.+..  .++.+||+|
T Consensus        87 ~~~~~~-~~~~~~~~~gi~eP~~~~~~~---~~~~iDlvlvP~Vafd~~G~RLG~GgGyYDR~la~~~~--~~~~~ig~~  160 (191)
T COG0212          87 RYIPDP-LQPLIKNRFGILEPGEYGRKI---PPPEIDLVLVPLVAFDKQGYRLGYGGGYYDRYLANLRG--RKTPTVGIA  160 (191)
T ss_pred             EecCCC-CcccccccccccCCCccCCcc---CCCcCCEEEeCceeECCCCccccCCCchHHHHHHhhcc--CCCCEEEEE
Confidence            322221 256788999999998664321   22679999999999999999999999999999999862  257899999


Q ss_pred             cCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        232 FSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       232 ~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      |+||+++.+|.|+||++||.|+||+|+
T Consensus       161 ~~~Q~v~~lP~e~hDv~ld~ivt~~~~  187 (191)
T COG0212         161 YDCQLVDHLPREPHDVPLDAIVTEEGV  187 (191)
T ss_pred             EeeeeeccCCCCcccCcccEEEeCCce
Confidence            999999999999999999999999985

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

Probab=99.65  E-value=1.5e-16  Score=134.46  Aligned_cols=93  Identities=18%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      ||++.+.....|.|..+.+.++|.+|+|||+||...  .....+.+++|++||||+|||++|+|+||  |+|||||+++.
T Consensus        65 lP~v~~~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~--~~~~~~~~~iDlviVP~laFD~~G~RLG~--GgGyYDR~L~~  140 (182)
T PRK10333         65 LPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLD--VRDVLPLSRLDVLITPLVAFDEYGQRLGM--GGGFYDRTLQN  140 (182)
T ss_pred             EeEEecCCCCEEEEEECCCCCccccCCCCCCCCCcc--ccccCCcccCCEEEeCceEECCCCCcccC--CcchHHHHHHH
Confidence            788754322224455555677899999999999742  11224567899999999999999999999  99999999985


Q ss_pred             ccccccceEEeeccCCC
Q psy17389         83 PVYEQSKRISIYVDRDD   99 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~~   99 (259)
                      .......+|+++++++-
T Consensus       141 ~~~~~~~~igla~~~Q~  157 (182)
T PRK10333        141 WQHYKTQPVGYAHDCQL  157 (182)
T ss_pred             hcccCCcEEEEeeeeEE
Confidence            22122457999988864

>KOG4410|consensus

Probab=99.65  E-value=2e-16  Score=138.39  Aligned_cols=169  Identities=17%  Similarity=0.288  Sum_probs=118.2

Q ss_pred             cccccCccc-chhcccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeeccccc
Q psy17389         59 AFTETGKRC-TVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWS  137 (259)
Q Consensus        59 afd~~g~R~-g~~~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~  137 (259)
                      .+..-.+|+ +|..+...+..|.++..|+.|+.|-+-  ...  .+..+...++...|++++|.....+-.|        
T Consensus        53 ~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVn--pD~--pl~~~r~L~L~~~Ksll~PspRlrtglf--------  120 (396)
T KOG4410|consen   53 GPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVN--PDR--PLHEFRELALLADKSLLLPSPRLRTGLF--------  120 (396)
T ss_pred             CCcchhhcCccccchHHHHHHhhhhHHHhhcceeecC--CCc--hHHHHHHHHhhcccceecCCchhhccee--------
Confidence            344446677 455556666777778889999888663  333  5678888889999999999987666444        


Q ss_pred             ccchhhcceeeeeEEEeccCCcc--ccc--cCcCcc---CCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCch
Q psy17389        138 GEATLRSRVVLRELVLHRYEDLD--NLI--KNKENI---LQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGY  210 (259)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~--~l~--~~~~gi---~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~Gy  210 (259)
                                   .++.......  .+.  ...-|+   ..+....      ..-.+|||||..||+++.|+|||.|.||
T Consensus       121 -------------~kv~~~~~ate~i~~~c~tsqgv~ky~~~IGLD------s~lkvDlvViGSVavs~~G~RiGkGeGf  181 (396)
T KOG4410|consen  121 -------------LKVDVLADATEEIKKECLTSQGVQKYRSEIGLD------SGLKVDLVVIGSVAVSREGYRIGKGEGF  181 (396)
T ss_pred             -------------eeeccCCCCcHHHHHHHHhhhhHHHhCcccccc------cCceEEEEEEeeEEecccceeeccCCch
Confidence                         3332221110  010  011122   1222211      1125899999999999999999999999


Q ss_pred             hhhhhhhcccc---CCCccEEEEecCcccccCCC---CCCCCccCCEEEcCCCC
Q psy17389        211 YDTYLSELKRI---SPHCKTIGLAFSCQMVEDLP---MSDHDVPLDYVIHPLST  258 (259)
Q Consensus       211 YDr~l~~~~~~---~~~~~~igl~~~~Q~~~~ip---~e~~D~~ld~iiTe~~~  258 (259)
                      -|.-.+.+...   .+++++|.+++|||++|+||   .+.||+|+|+|+||++.
T Consensus       182 AdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPTrv  235 (396)
T KOG4410|consen  182 ADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPTRV  235 (396)
T ss_pred             hhhhhHHHHHhcccCCCCceEEEEecceeeccCCHHHHhhcCCCccEEeccceE
Confidence            99877655432   25789999999999999999   56999999999999874

>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6

Probab=99.56  E-value=1.1e-15  Score=129.08  Aligned_cols=92  Identities=27%  Similarity=0.388  Sum_probs=67.8

Q ss_pred             cccccCCc--ceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhc
Q psy17389          3 LARYDKTE--MTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFL   80 (259)
Q Consensus         3 ~p~~~~~~--m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll   80 (259)
                      ||++..+.  |.++.+..+.+.+.|++|+|||+||....  ....+...+|+++|||+|||++|+|+|+  |+|||||++
T Consensus        71 lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~--~~~~~~~~idlvlVP~lafd~~G~RLG~--GgGyYDR~L  146 (186)
T PF01812_consen   71 LPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGES--PPPDPPEEIDLVLVPGLAFDRNGNRLGY--GGGYYDRFL  146 (186)
T ss_dssp             EEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTC--SEEGGGGG-SEEEEE-SEEETTSBEE-S--SSTHHHHHH
T ss_pred             cceecccccccceeEEeecCCcccccccccCccCCcccc--ccccccccCCEEEeCcEEECCCCCeEec--CCCHHHhHH
Confidence            68766655  66777888878889999999999997632  1122234899999999999999999999  999999999


Q ss_pred             ccccc--cccceEEeeccCC
Q psy17389         81 KHPVY--EQSKRISIYVDRD   98 (259)
Q Consensus        81 ~~~~~--~~a~~I~ly~s~~   98 (259)
                      +....  ....+|+++++.+
T Consensus       147 ~~~~~~~~~~~~igl~~~~q  166 (186)
T PF01812_consen  147 ARLPPGRKKPLKIGLAFDFQ  166 (186)
T ss_dssp             HHHTS-SS--EEEEEE-GGG
T ss_pred             HhhhcccCCCeEEEEeehhh
Confidence            85322  2357899998876

3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....

>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase

Probab=99.54  E-value=1.1e-14  Score=122.84  Aligned_cols=92  Identities=25%  Similarity=0.325  Sum_probs=67.0

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      ||++.++...++.+..+...+.|..|+|||+||....  ....+.+.+|++|||++|||++|+|+||  |+|||||+++.
T Consensus        71 lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~--~~~~~~~~idlvivP~lafD~~G~RLG~--GgGyYDR~L~~  146 (181)
T TIGR02727        71 LPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDS--TEPVDPDEIDLIIVPGVAFDRRGYRLGY--GGGYYDRFLAN  146 (181)
T ss_pred             EEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcc--cCcCCcccCCEEEeCceEEcCCCccccC--CcchHHHHHHh
Confidence            6887554311233444444457999999999997531  1134577899999999999999999999  99999999985


Q ss_pred             ccccccceEEeeccCCC
Q psy17389         83 PVYEQSKRISIYVDRDD   99 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~~   99 (259)
                      ... ...+|++.++.+-
T Consensus       147 ~~~-~~~~igv~~~~q~  162 (181)
T TIGR02727       147 LKG-KTVVVGLAFDFQL  162 (181)
T ss_pred             ccc-CCCEEEEEeccee
Confidence            322 2237998888764

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.

>PLN02812 5-formyltetrahydrofolate cyclo-ligase

Probab=99.51  E-value=2.2e-14  Score=123.90  Aligned_cols=92  Identities=26%  Similarity=0.457  Sum_probs=66.7

Q ss_pred             cccccCC--cceEEEEeecCCC-CccccCCceeecCCCCCCCcc-----ccCCCCccEEEeccccccccCcccchhcccH
Q psy17389          3 LARYDKT--EMTMLKLHRYEDL-DNLIKNKENILQHSQTEPTED-----AMKTGGLDLVVVPGRAFTETGKRCTVSFSWP   74 (259)
Q Consensus         3 ~p~~~~~--~m~~~~~~~~~~~-~~l~~~~~gI~EP~~~~~~~~-----~~~~~~ldlvivP~~afd~~g~R~g~~~s~~   74 (259)
                      ||++.++  +|.|..+.   +. ++|.+|+|||+||........     ..+..++|+|||||+|||.+|+|+||  |+|
T Consensus        80 lP~~~~~~~~m~f~~~~---~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~--GgG  154 (211)
T PLN02812         80 VPRVEDKNSNMRMLHIT---DMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGR--GGG  154 (211)
T ss_pred             EeEEecCCCeEEEEEeC---CccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcC--CCc
Confidence            7887533  46666554   44 679999999999975311100     11367899999999999999999999  999


Q ss_pred             HHHhhccccc-------ccccceEEeeccCCC
Q psy17389         75 YIGCFLKHPV-------YEQSKRISIYVDRDD   99 (259)
Q Consensus        75 i~drll~~~~-------~~~a~~I~ly~s~~~   99 (259)
                      ||||+|+...       .....+|+++++++-
T Consensus       155 yYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~  186 (211)
T PLN02812        155 YYDTFLSKYQELAKEKGWKQPLLVALSYSPQI  186 (211)
T ss_pred             hHHHHHHHhhhhhccccCCCceEEEEeeheee
Confidence            9999998421       012447999888764

>KOG3093|consensus

Probab=99.44  E-value=2.5e-14  Score=118.35  Aligned_cols=92  Identities=30%  Similarity=0.483  Sum_probs=71.6

Q ss_pred             cccc--cCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCC-CccEEEeccccccccCcccchhcccHHHHhh
Q psy17389          3 LARY--DKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTG-GLDLVVVPGRAFTETGKRCTVSFSWPYIGCF   79 (259)
Q Consensus         3 ~p~~--~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~-~ldlvivP~~afd~~g~R~g~~~s~~i~drl   79 (259)
                      +|+|  ..++|.++++...+..+.|..+.|||++|....+.+...... .+|++||||||||+.|.|+|.  |+||||+|
T Consensus        79 iP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivPGvAFd~~g~RlGh--GkGYYD~f  156 (200)
T KOG3093|consen   79 IPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVPGVAFDRKGARLGH--GKGYYDDF  156 (200)
T ss_pred             eeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCCchhhhccCCCcceEEEecccccchhhhhccC--CcchHHHH
Confidence            6887  456788888888877788899999999998765554455554 699999999999999999999  99999999


Q ss_pred             cccc----cccccceEEeecc
Q psy17389         80 LKHP----VYEQSKRISIYVD   96 (259)
Q Consensus        80 l~~~----~~~~a~~I~ly~s   96 (259)
                      ++.-    .+++..+||+++.
T Consensus       157 lkry~~~~~~~kp~~vgL~l~  177 (200)
T KOG3093|consen  157 LKRYQIHAPEQKPLLVGLCLK  177 (200)
T ss_pred             HHHHHHhccccCchhhhhhhh
Confidence            8731    2233345555543

>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

Probab=99.37  E-value=6.8e-13  Score=112.92  Aligned_cols=91  Identities=24%  Similarity=0.274  Sum_probs=71.3

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      +|++....+.|+.+.... ...+..++|||.||.....  .... ..+|+++||+||||++|+|+||  |+|||||+++.
T Consensus        75 lP~~~~~~~~f~~~~~~~-~~~~~~~~~gi~eP~~~~~--~~~~-~~iDlvlvP~Vafd~~G~RLG~--GgGyYDR~la~  148 (191)
T COG0212          75 LPKLRDYKLLFLRYIPDP-LQPLIKNRFGILEPGEYGR--KIPP-PEIDLVLVPLVAFDKQGYRLGY--GGGYYDRYLAN  148 (191)
T ss_pred             EeEEEcCcceeEEecCCC-CcccccccccccCCCccCC--ccCC-CcCCEEEeCceeECCCCccccC--CCchHHHHHHh
Confidence            577654457777776543 3678899999999976422  2223 7899999999999999999999  99999999986


Q ss_pred             ccccccceEEeeccCCC
Q psy17389         83 PVYEQSKRISIYVDRDD   99 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~~   99 (259)
                      ....+..+|++.+++|-
T Consensus       149 ~~~~~~~~ig~~~~~Q~  165 (191)
T COG0212         149 LRGRKTPTVGIAYDCQL  165 (191)
T ss_pred             hccCCCCEEEEEEeeee
Confidence            43357789999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
3hxt_A	203	Structure Of Human Mthfs Length = 203		1e-24
1ydm_A	187	X-ray Structure Of Northeast Structural Genomics Ta		9e-11
2jcb_A	200	The Crystal Structure Of 5-Formyl-Tetrahydrofolate		4e-09
1sou_A	194	Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltet		1e-08
1wkc_A	184	Crystal Structure Of A 5-Formyltetrahydrofolate Cyc		1e-08
1sbq_A	189	Crystal Structure Of Methenyltetrahydrofolate Synth		7e-06

>pdb|3HXT|A Chain A, Structure Of Human Mthfs Length = 203

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 24/182 (13%)
Query: 80  LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
           + H  Y++SKRISI++   DEI T +II+ I   GK CFIPRY      M + R      
Sbjct: 41  IAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVR------ 94
Query: 140 ATXXXXXXXXXXXXXXYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
                            E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F +
Sbjct: 95  -------------IESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDK 141
Query: 200 TGKRMGRGKGYYDTYLS---ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL 256
            G R+GRGKGYYD YL    + + + P+  T+ LAF  Q+   +P++++D+ +D V++  
Sbjct: 142 HGNRLGRGKGYYDAYLKRCLQHQEVKPY--TLALAFKEQICLQVPVNENDMKVDEVLYED 199
Query: 257 ST 258
           S+
Sbjct: 200 SS 201

>pdb|1YDM|A Chain A, X-ray Structure Of Northeast Structural Genomics Target Sr44 Length = 187

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 73/173 (42%), Gaps = 33/173 (19%)
Query: 83  PVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRY--DKTEMTMRIFRQTWSGEA 140
           P ++ +  I++ + R  EI TR +I+     GK+  IP+   D  +   R ++     E 
Sbjct: 36  PEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDTKKXQFRTYQTDDQLET 95
Query: 141 TXXXXXXXXXXXXXXYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTET 200
                          Y  L   +  K   +  SQ            +DL +VPG  F   
Sbjct: 96  V--------------YAGLLEPVIEKTKEVNPSQ------------IDLXIVPGVCFDVN 129
Query: 201 GKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
           G R+G G GYYD YLSE +      KT+ L   CQ+   +P   HD+P+  +I
Sbjct: 130 GFRVGFGGGYYDRYLSEYEG-----KTVSLLLECQLFAHVPRLPHDIPVHKLI 177

>pdb|2JCB|A Chain A, The Crystal Structure Of 5-Formyl-Tetrahydrofolate Cycloligase From Bacillus Anthracis (Ba4489) Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 29/169 (17%)
Query: 85  YEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATXXX 144
           + ++K I I +  ++E++T  II+     GK   +P+ +K   TM  FRQ          
Sbjct: 49  WAEAKTIGITLSMENEVNTYPIIEKAWKEGKRVVVPKCNKETRTMS-FRQI--------- 98
Query: 145 XXXXXXXXXXXYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRM 204
                      ++ L+ +  N    L+      TE+ +    +DL +VPG A+TE G+R+
Sbjct: 99  ---------SNFDQLETVYMN----LREPIPALTEE-VNADEIDLQIVPGVAYTERGERI 144
Query: 205 GRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
           G G GYYD YL   K      KT+ LA+S QMVE +P+   D  ++ +I
Sbjct: 145 GYGGGYYDRYLVHYK-----GKTLSLAYSFQMVEHIPVEPFDKNVEKII 188

>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltetrahydrofolate Synthetase: Northeast Structural Genomics Consortium Target Qr46 Length = 194

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 176 EPTE-DAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSC 234
           EP E + +    +D + VPG AF   G R+G GKGYYD  L  +K +      +G+A+S 
Sbjct: 100 EPVEGERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRVKGLK-----VGVAYSF 154
Query: 235 QMVEDLPMSDHDVPLDYVI 253
           Q+ E LP    D+P+D ++
Sbjct: 155 QVFERLPRDAWDIPVDVLV 173

>pdb|1WKC|A Chain A, Crystal Structure Of A 5-Formyltetrahydrofolate Cycloligase-Related Protein From Thermus Thermophilus Hb8 Length = 184

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 175 TEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSC 234
           T P ED      LDLVVVPG AF   G R+G G+G+YD +L E++       T+G+    
Sbjct: 94  TTPPEDPRV---LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVVPQA 145
Query: 235 QMVEDLPMSDHDVPLDYV 252
            +   LP    DVP+D++
Sbjct: 146 LLFPALPRDPWDVPVDHL 163

>pdb|1SBQ|A Chain A, Crystal Structure Of Methenyltetrahydrofolate Synthetase From Mycoplasma Pneumoniae At 2.2 Resolution Length = 189

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 180 DAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVED 239
           +  +   +D  ++P   F +   R+G GKGYYD YL +L R  P    IG+A+S Q   D
Sbjct: 117 NTFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTRQQPK---IGIAYSFQK-GD 172
Query: 240 LPMSDHDVPLDYVIH 254
                 DV LD +I+
Sbjct: 173 FLADPWDVQLDLIIN 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	3e-53
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	2e-10
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	6e-50
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	2e-06
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	2e-48
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	3e-06
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	1e-41
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	2e-04
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	2e-40
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	2e-04
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	4e-32

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203

 Score =  170 bits (432), Expect = 3e-53
 Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 20/178 (11%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            + H  Y++SKRISI++   DEI T +II+ I   GK CFIPRY      M + R     
Sbjct: 40  VIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVR----- 94

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                         +   E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F 
Sbjct: 95  --------------IESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFD 140

Query: 199 ETGKRMGRGKGYYDTYLSELKRIS-PHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
           + G R+GRGKGYYD YL    +       T+ LAF  Q+   +P++++D+ +D V++ 
Sbjct: 141 KHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYE 198

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 5   RYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 64
           R+    M M+++   E++  L K   NI Q  + +  E+A+ TGGLDL+ +PG  F + G
Sbjct: 84  RFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHG 143

Query: 65  KR 66
            R
Sbjct: 144 NR 145

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187

 Score =  161 bits (410), Expect = 6e-50
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 35/180 (19%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
               P ++ +  I++ + R  EI TR +I+     GK+  IP+                 
Sbjct: 32  LFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDT------------ 79

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMK---TGGLDLVVVPGR 195
                     +++    Y+  D L      +L     EP  +  K      +DL++VPG 
Sbjct: 80  ----------KKMQFRTYQTDDQLETVYAGLL-----EPVIEKTKEVNPSQIDLMIVPGV 124

Query: 196 AFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
            F   G R+G G GYYD YLSE +      KT+ L   CQ+   +P   HD+P+  +I  
Sbjct: 125 CFDVNGFRVGFGGGYYDRYLSEYE-----GKTVSLLLECQLFAHVPRLPHDIPVHKLITE 179

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 14  LKLHRYEDLDNLIKNKENILQHSQTEPTEDAMK---TGGLDLVVVPGRAFTETGKR 66
           ++   Y+  D L      +L     EP  +  K      +DL++VPG  F   G R
Sbjct: 82  MQFRTYQTDDQLETVYAGLL-----EPVIEKTKEVNPSQIDLMIVPGVCFDVNGFR 132

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200

 Score =  158 bits (401), Expect = 2e-48
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 35/178 (19%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
             +   + ++K I I +  ++E++T  II+     GK   +P+ +K              
Sbjct: 43  LYEQKEWAEAKTIGITLSMENEVNTYPIIEKAWKEGKRVVVPKCNKET------------ 90

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTED---AMKTGGLDLVVVPGR 195
                     R +   +  + D L     N+      EP       +    +DL +VPG 
Sbjct: 91  ----------RTMSFRQISNFDQLETVYMNLR-----EPIPALTEEVNADEIDLQIVPGV 135

Query: 196 AFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
           A+TE G+R+G G GYYD YL   K      KT+ LA+S QMVE +P+   D  ++ +I
Sbjct: 136 AYTERGERIGYGGGYYDRYLVHYK-----GKTLSLAYSFQMVEHIPVEPFDKNVEKII 188

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 14  LKLHRYEDLDNLIKNKENILQHSQTEPTED---AMKTGGLDLVVVPGRAFTETGKR 66
           +   +  + D L     N+      EP       +    +DL +VPG A+TE G+R
Sbjct: 93  MSFRQISNFDQLETVYMNLR-----EPIPALTEEVNADEIDLQIVPGVAYTERGER 143

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194

 Score =  140 bits (355), Expect = 1e-41
 Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 36/176 (20%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
               P +++SK++++Y     E+    +        KE  +P+ +  E+           
Sbjct: 33  LKSLPEFKKSKKVALYCPIKGEVDLTPLFPE-VLKEKELILPKVEGNEI----------- 80

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTED-AMKTGGLDLVVVPGRAF 197
                         L+R      L      I+     EP E   +    +D + VPG AF
Sbjct: 81  -------------SLYRVHSPACLGVGAFGIM-----EPVEGERVNPEDVDFIAVPGVAF 122

Query: 198 TETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
              G R+G GKGYYD  L  +K        +G+A+S Q+ E LP    D+P+D ++
Sbjct: 123 DLEGYRLGFGKGYYDRLLKRVK-----GLKVGVAYSFQVFERLPRDAWDIPVDVLV 173

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 14  LKLHRYEDLDNLIKNKENILQHSQTEPTED-AMKTGGLDLVVVPGRAFTETGKR 66
           + L+R      L      I+     EP E   +    +D + VPG AF   G R
Sbjct: 80  ISLYRVHSPACLGVGAFGIM-----EPVEGERVNPEDVDFIAVPGVAFDLEGYR 128

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184

 Score =  136 bits (346), Expect = 2e-40
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 40/175 (22%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
            L        + I +Y     E++   +++         ++P+                 
Sbjct: 30  LLPWLRERGFRHILLYHPLPHELNLLPLMEAY---PARYYLPK----------------- 69

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                  V  + L +H +  L         +L     EPT        LDLVVVPG AF 
Sbjct: 70  -------VAGKGLTVHPFGPL---APGPFGLL-----EPTTPPEDPRVLDLVVVPGLAFD 114

Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
             G R+G G+G+YD +L E++       T+G+     +   LP    DVP+D++ 
Sbjct: 115 REGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWDVPVDHLA 164

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 14  LKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKR 66
           L +H +  L         +L     EPT        LDLVVVPG AF   G R
Sbjct: 75  LTVHPFGPL---APGPFGLL-----EPTTPPEDPRVLDLVVVPGLAFDREGYR 119

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189

 Score =  115 bits (291), Expect = 4e-32
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 52/178 (29%)

Query: 79  FLKHPVYEQS-KRISIYVDRDDEISTRKIIQHICSSGK-ECFIPR-YDKTEMTMRIFRQT 135
            +     +   K I++Y    +E++            +     P+    TE+        
Sbjct: 58  LVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQIRAVYPKVISDTEI-------- 109

Query: 136 WSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGR 195
                                      I  + N       EP +       +D  ++P  
Sbjct: 110 -------------------------IFIDQETNTF-----EPNQ-------IDCFLIPLV 132

Query: 196 AFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
            F +   R+G GKGYYD YL +L         IG+A+S Q  + L     DV LD +I
Sbjct: 133 GFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGDFLADP-WDVQLDLII 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	100.0
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	100.0
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	100.0
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	100.0
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	100.0
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	100.0
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	99.64
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	99.56
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	99.53
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	99.53
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	99.48
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	98.91

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A

Probab=100.00  E-value=2.9e-49  Score=338.03  Aligned_cols=167  Identities=39%  Similarity=0.629  Sum_probs=138.7

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecC--Cceeeeecccccccchhhcceee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKT--EMTMRIFRQTWSGEATLRSRVVL  148 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  148 (259)
                      +|..+++++++++.++++++|++|+|+++||||.+|++++++.||+|+||++...  .|.|                   
T Consensus        32 ~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~v~lP~~~~~~~~m~~-------------------   92 (203)
T 3hy3_A           32 QSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDM-------------------   92 (203)
T ss_dssp             HHHHHHHHHHTCHHHHHCSEEECCCCCTTSCCCHHHHHHHHHTTCEEEEEEEETTTTEEEE-------------------
T ss_pred             HHHHHHHHHHhCHhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEEEEecCCCeEEE-------------------
Confidence            4899999999988899999999999999999999999999999999999999653  3776                   


Q ss_pred             eeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhcccc-CCCccE
Q psy17389        149 RELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRI-SPHCKT  227 (259)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~-~~~~~~  227 (259)
                        +.+.++++++.|++|+|||+||.......+.+....+|+|||||||||++|+|||||||||||||+.+... +.++.+
T Consensus        93 --~~~~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~DlvlVP~vaFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~  170 (203)
T 3hy3_A           93 --VRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYT  170 (203)
T ss_dssp             --EEECCHHHHTTSCBCTTSCBCCCTTCCCCBGGGTTCCSEEEECCSEECTTCCEECSSSCHHHHHHHHHTTTCSSCCEE
T ss_pred             --EEeCChhhhhhccCCCCCCCCCCCccccccccCccCCCEEEeCCeEECCCCceecCCCchHHHHHHHhhhhcCCCCeE
Confidence              55555544456889999999998653222234456899999999999999999999999999999987431 124678


Q ss_pred             EEEecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        228 IGLAFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       228 igl~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      |||||++|+++++|+|+||++||+||||+|+
T Consensus       171 igla~~~Q~~~~lP~e~hDi~ld~iiTe~~~  201 (203)
T 3hy3_A          171 LALAFKEQICLQVPVNENDMKVDEVLYEDSS  201 (203)
T ss_dssp             EEECCGGGBCSCCCCC--CCCCSEEECC---
T ss_pred             EEEecHHhccCCCCCCcccccCCEEEeCCCc
Confidence            9999999999999999999999999999986

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=6.4e-47  Score=319.64  Aligned_cols=158  Identities=28%  Similarity=0.498  Sum_probs=135.0

Q ss_pred             hcccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceee--cCCceeeeecccccccchhhccee
Q psy17389         70 SFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYD--KTEMTMRIFRQTWSGEATLRSRVV  147 (259)
Q Consensus        70 ~~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~--~~~~~~~~~~~~~~~~~~~~~~~~  147 (259)
                      .++..+++++++++.++++++|++|+|+++|+||.+|+++++++||+|+||++.  ...|.|                  
T Consensus        23 ~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~gk~v~lP~~~~~~~~m~f------------------   84 (187)
T 1ydm_A           23 QKTERMYKYLFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDTKKMQF------------------   84 (187)
T ss_dssp             HHHHHHHHHHHTSHHHHTCSEEECCCCCTTSCCCHHHHHHHHHTTCEEEEECC---CCCCCE------------------
T ss_pred             HHHHHHHHHHHhCHHhhhCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEeEEecCCCcEEE------------------
Confidence            348889999999988999999999999999999999999999999999999985  344777                  


Q ss_pred             eeeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccE
Q psy17389        148 LRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKT  227 (259)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~  227 (259)
                         +.+   ++.+.|.+|+|||+||.....  .......+|+|||||||||++|+|||||||||||||+.+.     ..+
T Consensus        85 ---~~~---~~~~~L~~~~~gi~EP~~~~~--~~~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR~L~~~~-----~~~  151 (187)
T 1ydm_A           85 ---RTY---QTDDQLETVYAGLLEPVIEKT--KEVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDRYLSEYE-----GKT  151 (187)
T ss_dssp             ---EEC---CCCTTHHHHHTTSCCCC--CC--CCCCGGGCCEEECCCSEEETTSCEECCSCCSTTTGGGTCC-----SEE
T ss_pred             ---EEe---CCCCccCcCCCCCCCCCCccc--ccCCccCCCEEEeCCeEECCCCCcccCCccHHHHHHHhCC-----CCE
Confidence               343   334568899999999975321  1123457999999999999999999999999999999873     368


Q ss_pred             EEEecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        228 IGLAFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       228 igl~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      ||+||++|+++++|+|+||++||+||||+++
T Consensus       152 igla~~~Q~~~~lP~e~hD~~ld~iiTe~~~  182 (187)
T 1ydm_A          152 VSLLLECQLFAHVPRLPHDIPVHKLITEDRI  182 (187)
T ss_dssp             EEECCGGGEESCCCCCTTCCCCSEEECSSCE
T ss_pred             EEEEeHHHhcCCCCCccccCcCCEEEECCcE
Confidence            9999999999999999999999999999974

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}

Probab=100.00  E-value=2e-46  Score=319.68  Aligned_cols=157  Identities=31%  Similarity=0.529  Sum_probs=135.7

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecC--Cceeeeecccccccchhhcceee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKT--EMTMRIFRQTWSGEATLRSRVVL  148 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  148 (259)
                      +|..+++++++++.++++++|++|+|+++|+||.+|++.++++||+|+||++...  .|.|                   
T Consensus        35 ~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~v~lP~~~~~~~~m~f-------------------   95 (200)
T 2jcb_A           35 LSEQIVFSLYEQKEWAEAKTIGITLSMENEVNTYPIIEKAWKEGKRVVVPKCNKETRTMSF-------------------   95 (200)
T ss_dssp             HHHHHHHHHHTSHHHHHCSEEECCCCCTTSCCCHHHHHHHHHTTCEEEEEEEETTTTEEEE-------------------
T ss_pred             HHHHHHHHHHhChhhhcCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEeEEEcCCCcEEE-------------------
Confidence            4888999999998899999999999999999999999999999999999998643  3666                   


Q ss_pred             eeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEE
Q psy17389        149 RELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTI  228 (259)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~i  228 (259)
                        +.+   ++.++|.+|+|||+||.....  .......+|+|||||||||++|+|||||||||||||+.+.     ..+|
T Consensus        96 --~~~---~~~~~L~~g~~GI~EP~~~~~--~~~~~~~iDlvlVP~vAfD~~G~RLG~GgGyYDR~La~~~-----~~~i  163 (200)
T 2jcb_A           96 --RQI---SNFDQLETVYMNLREPIPALT--EEVNADEIDLQIVPGVAYTERGERIGYGGGYYDRYLVHYK-----GKTL  163 (200)
T ss_dssp             --EEE---SSGGGEEEEETTEEEECGGGC--EECCGGGCSEEECCCSEECTTSCEECSSSCHHHHHTTTCC-----SEEE
T ss_pred             --EEe---CCCcccccCCCCCCCCCCccc--ccCCccCCCEEEECCeEECCCCCeeccCCchHHHHHhhcC-----CCEE
Confidence              343   334568999999999974221  1123457999999999999999999999999999999873     2689


Q ss_pred             EEecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        229 GLAFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       229 gl~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      |+||++|+++++|+|+||++||+||||+++
T Consensus       164 gla~~~Q~v~~lP~e~hDi~ld~iiTe~~~  193 (200)
T 2jcb_A          164 SLAYSFQMVEHIPVEPFDKNVEKIITEKGT  193 (200)
T ss_dssp             EECCGGGBCSCCCCCTTCCCCSEEEETTEE
T ss_pred             EEEehhhccCCCCCCccCCcCCEEEECCeE
Confidence            999999999999999999999999999874

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6

Probab=100.00  E-value=5.8e-46  Score=315.44  Aligned_cols=155  Identities=26%  Similarity=0.504  Sum_probs=134.9

Q ss_pred             hcccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeecccccccchhhcceeee
Q psy17389         70 SFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLR  149 (259)
Q Consensus        70 ~~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (259)
                      .+|..+++++++++.++++++|++|+|+++|+||.+|++.++++ |+|+||++....|.|                    
T Consensus        24 ~~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~~~~~~-k~v~lP~~~~~~m~f--------------------   82 (194)
T 1sou_A           24 RLSEKVISNLKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLKE-KELILPKVEGNEISL--------------------   82 (194)
T ss_dssp             HHHHHHHHHHHHCHHHHHCCEEEECCCCSSCCCCGGGHHHHHHH-SEEEEEEESSSSEEE--------------------
T ss_pred             HHHHHHHHHHHhChhhhcCCEEEEECCCCCCCCHHHHHHHHHHc-CCEEEEEecCCeeEE--------------------
Confidence            34888999999988899999999999999999999999999999 999999984445777                    


Q ss_pred             eEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEE
Q psy17389        150 ELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIG  229 (259)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~ig  229 (259)
                       +.+.   +.++|++|+|||+||.. .   .......+|+|||||||||++|+|||||||||||||+.+.     +.+||
T Consensus        83 -~~~~---~~~~L~~g~~GI~EP~~-~---~~~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~L~~~~-----~~~ig  149 (194)
T 1sou_A           83 -YRVH---SPACLGVGAFGIMEPVE-G---ERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRVK-----GLKVG  149 (194)
T ss_dssp             -EEES---SSCCCEECSSSCEECCS-S---EEECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHHHHHCC-----SEEEE
T ss_pred             -EEEC---CCCccCCCCCCCCCCCc-c---ccCCCCCCCEEEECCeEECCCCceeccCCcHHHHHHHhcC-----CCEEE
Confidence             4443   33568899999999974 1   1123457999999999999999999999999999999873     36899


Q ss_pred             EecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        230 LAFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       230 l~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      +||++|+++++|+|+||++||+||||+++
T Consensus       150 la~~~Q~v~~lP~e~hDi~ld~iiTe~~~  178 (194)
T 1sou_A          150 VAYSFQVFERLPRDAWDIPVDVLVTEKNV  178 (194)
T ss_dssp             ECCGGGBCSCCCCCSCCCCCSEEECSSCE
T ss_pred             EEchHhccCCCCCCcccccCCEEEECCeE
Confidence            99999999999999999999999999874

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6

Probab=100.00  E-value=2.4e-44  Score=303.08  Aligned_cols=148  Identities=25%  Similarity=0.421  Sum_probs=121.3

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeecccccccchhhcceeeee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRE  150 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (259)
                      ++..+++++++++.++++++|++|+|+.+|+||.+|++  +++ |+|+||++..+.|.|                     
T Consensus        22 ~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Evdt~~li~--~~~-k~v~lP~~~~~~m~f---------------------   77 (184)
T 1wkc_A           22 LSRAVGAALLPWLRERGFRHILLYHPLPHELNLLPLME--AYP-ARYYLPKVAGKGLTV---------------------   77 (184)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEECCCCCTTCCCCTTHHH--HSC-CEEEEEEEETTEEEE---------------------
T ss_pred             HHHHHHHHHHhChhhhcCCEEEEECCCCCCcCHHHHHH--hhc-CCEEEeEEeCCceEE---------------------
Confidence            37889999999888999999999999999999999999  778 999999875335655                     


Q ss_pred             EEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEE
Q psy17389        151 LVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGL  230 (259)
Q Consensus       151 ~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl  230 (259)
                      +.+   +   +|.+|+|||+|| ...    ......+|+|||||||||++|+|||||||||||||+.+.     +.+||+
T Consensus        78 ~~~---~---~L~~~~~gi~EP-~~~----~~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~L~~~~-----~~~igl  141 (184)
T 1wkc_A           78 HPF---G---PLAPGPFGLLEP-TTP----PEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGV  141 (184)
T ss_dssp             EES---C---CBC-------CB-CSC----CBCGGGCSEEEECCSEEETTSCEECCSSCHHHHHHHHCC-----SEEEEE
T ss_pred             EEe---c---ccCCCCCCCCCC-CCc----cCCCCCCCEEEECcEEECCCCCEeeCCccHHHHHHHhcC-----CCEEEE
Confidence            332   2   578999999999 322    113457999999999999999999999999999999873     468999


Q ss_pred             ecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        231 AFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       231 ~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      ||++|+++++|+|+||++||+||||+++
T Consensus       142 ~~~~Q~~~~lp~e~hD~~ld~iiT~~~~  169 (184)
T 1wkc_A          142 VPQALLFPALPRDPWDVPVDHLATEAGV  169 (184)
T ss_dssp             CCGGGEESCCCCCTTCCCCSEEEETTEE
T ss_pred             EchhhccCCCCCccccCccCEEEECCEE
Confidence            9999999999999999999999999874

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*

Probab=100.00  E-value=3.9e-41  Score=284.39  Aligned_cols=138  Identities=23%  Similarity=0.352  Sum_probs=118.5

Q ss_pred             hcccHHHHhhccccccc-ccceEEeeccCCCCCChHHHHHHHHhCCC-EEEEceeecC-Cceeeeecccccccchhhcce
Q psy17389         70 SFSWPYIGCFLKHPVYE-QSKRISIYVDRDDEISTRKIIQHICSSGK-ECFIPRYDKT-EMTMRIFRQTWSGEATLRSRV  146 (259)
Q Consensus        70 ~~s~~i~drll~~~~~~-~a~~I~ly~s~~~Ev~t~~li~~~~~~gk-~v~lP~~~~~-~~~~~~~~~~~~~~~~~~~~~  146 (259)
                      .++..+++++++++.++ ++++|++|+|+++|+||.+|++.++++|| +|+||++..+ .|.|                 
T Consensus        49 ~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~~v~lP~~~~~~~m~f-----------------  111 (189)
T 1sbq_A           49 HLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQIRAVYPKVISDTEIIF-----------------  111 (189)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCCEEECCCCCTTSCCCCHHHHHHHHHTTCEEEEEEECSSSCEEE-----------------
T ss_pred             HHHHHHHHHHHHhHHhHhhCCEEEEECCCCCCCCHHHHHHHHHHcCCCeEEEeEEccCCceEE-----------------
Confidence            34888999999988899 99999999999999999999999999999 9999998543 3666                 


Q ss_pred             eeeeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCcc
Q psy17389        147 VLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCK  226 (259)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~  226 (259)
                          +.   +++.            |.         ....+|+|||||||||++|+|||||||||||||+.+..   ++.
T Consensus       112 ----~~---~~~~------------~~---------~~~~iDlvlVP~vAfD~~G~RLG~GgGyYDR~La~~~~---~~~  160 (189)
T 1sbq_A          112 ----ID---QETN------------TF---------EPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTR---QQP  160 (189)
T ss_dssp             ----EC---TTCC------------EE---------CGGGCCEEEEECSEECTTCCEECCSSCHHHHHGGGCCS---CCC
T ss_pred             ----EE---eCCC------------CC---------CcccCCEEEECceEECCCCCEeecCCchHHHHHHhcCC---CCC
Confidence                22   2211            11         12368999999999999999999999999999998753   357


Q ss_pred             EEEEecCcccccCCCCCCCCccCCEEEcCC
Q psy17389        227 TIGLAFSCQMVEDLPMSDHDVPLDYVIHPL  256 (259)
Q Consensus       227 ~igl~~~~Q~~~~ip~e~~D~~ld~iiTe~  256 (259)
                      +||+||++|+++ +|+|+||++||+||||+
T Consensus       161 ~igla~~~Q~v~-lP~e~hDiplD~IiTe~  189 (189)
T 1sbq_A          161 KIGIAYSFQKGD-FLADPWDVQLDLIINDE  189 (189)
T ss_dssp             EEEEECGGGBCC-CCCCTTSCCCSEEEECC
T ss_pred             EEEEechHheeC-CCCCcccCcCCEEEcCC
Confidence            899999999999 99999999999999985

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A

Probab=99.64  E-value=6.8e-17  Score=137.47  Aligned_cols=94  Identities=28%  Similarity=0.465  Sum_probs=70.0

Q ss_pred             cccccC--CcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhc
Q psy17389          3 LARYDK--TEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFL   80 (259)
Q Consensus         3 ~p~~~~--~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll   80 (259)
                      ||++..  +.|.|..+...++.+.|.+|+|||+||.........+..+++|++||||+|||++|+|+||  |+|||||++
T Consensus        80 lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~DlvlVP~vaFD~~G~RLG~--GgGyYDR~L  157 (203)
T 3hy3_A           80 IPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGR--GKGYYDAYL  157 (203)
T ss_dssp             EEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCCCCBGGGTTCCSEEEECCSEECTTCCEECS--SSCHHHHHH
T ss_pred             EEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccccccccCccCCCEEEeCCeEECCCCceecC--CCchHHHHH
Confidence            788743  4687777765433346889999999997532111234566899999999999999999999  999999999


Q ss_pred             cccc---ccccceEEeeccCC
Q psy17389         81 KHPV---YEQSKRISIYVDRD   98 (259)
Q Consensus        81 ~~~~---~~~a~~I~ly~s~~   98 (259)
                      +...   .....+|+++++++
T Consensus       158 ~~~~~~~~~~~~~igla~~~Q  178 (203)
T 3hy3_A          158 KRCLQHQEVKPYTLALAFKEQ  178 (203)
T ss_dssp             HHHTTTCSSCCEEEEECCGGG
T ss_pred             HHhhhhcCCCCeEEEEecHHh
Confidence            8421   12355799988876

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6

Probab=99.56  E-value=1.3e-15  Score=128.63  Aligned_cols=85  Identities=19%  Similarity=0.316  Sum_probs=67.5

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      ||++.++.|.|..+.   +.++|.+|+|||+||.. .   .......+|+++|||+|||++|+|+||  |+|||||+++.
T Consensus        72 lP~~~~~~m~f~~~~---~~~~L~~g~~GI~EP~~-~---~~~~~~~iDlvlvP~vafD~~G~RLG~--GgGyYDR~L~~  142 (194)
T 1sou_A           72 LPKVEGNEISLYRVH---SPACLGVGAFGIMEPVE-G---ERVNPEDVDFIAVPGVAFDLEGYRLGF--GKGYYDRLLKR  142 (194)
T ss_dssp             EEEESSSSEEEEEES---SSCCCEECSSSCEECCS-S---EEECGGGCSEEEECCSCBCSSSCBCCS--CCSSHHHHHHH
T ss_pred             EEEecCCeeEEEEEC---CCCccCCCCCCCCCCCc-c---ccCCCCCCCEEEECCeEECCCCceecc--CCcHHHHHHHh
Confidence            687755667766664   45689999999999964 1   223457899999999999999999999  99999999984


Q ss_pred             ccccccceEEeeccCCC
Q psy17389         83 PVYEQSKRISIYVDRDD   99 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~~   99 (259)
                      .  . ..+|+++++++-
T Consensus       143 ~--~-~~~igla~~~Q~  156 (194)
T 1sou_A          143 V--K-GLKVGVAYSFQV  156 (194)
T ss_dssp             C--C-SEEEEECCGGGB
T ss_pred             c--C-CCEEEEEchHhc
Confidence            2  2 357999888763

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}

Probab=99.53  E-value=1.3e-15  Score=127.87  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=65.7

Q ss_pred             ccccc--CCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhc
Q psy17389          3 LARYD--KTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFL   80 (259)
Q Consensus         3 ~p~~~--~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll   80 (259)
                      ||++.  ++.|.|..+.   +.++|.+|+|||+||....  ....+...+|+++|||+|||++|+|+||  |+|||||++
T Consensus        72 lP~~~~~~~~m~f~~~~---~~~~L~~~~~gi~EP~~~~--~~~~~~~~iDlvivP~vafD~~G~RLG~--GgGyYDR~L  144 (187)
T 1ydm_A           72 IPKCHPDTKKMQFRTYQ---TDDQLETVYAGLLEPVIEK--TKEVNPSQIDLMIVPGVCFDVNGFRVGF--GGGYYDRYL  144 (187)
T ss_dssp             EECC---CCCCCEEECC---CCTTHHHHHTTSCCCC--C--CCCCCGGGCCEEECCCSEEETTSCEECC--SCCSTTTGG
T ss_pred             EeEEecCCCcEEEEEeC---CCCccCcCCCCCCCCCCcc--cccCCccCCCEEEeCCeEECCCCCcccC--CccHHHHHH
Confidence            68763  4568766554   5568999999999997421  1123467899999999999999999999  999999999


Q ss_pred             ccccccccceEEeeccCC
Q psy17389         81 KHPVYEQSKRISIYVDRD   98 (259)
Q Consensus        81 ~~~~~~~a~~I~ly~s~~   98 (259)
                      +..  . ..+|++.++++
T Consensus       145 ~~~--~-~~~igla~~~Q  159 (187)
T 1ydm_A          145 SEY--E-GKTVSLLLECQ  159 (187)
T ss_dssp             GTC--C-SEEEEECCGGG
T ss_pred             HhC--C-CCEEEEEeHHH
Confidence            852  2 36788888865

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}

Probab=99.53  E-value=1.9e-15  Score=128.22  Aligned_cols=86  Identities=22%  Similarity=0.374  Sum_probs=66.2

Q ss_pred             ccccc--CCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhc
Q psy17389          3 LARYD--KTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFL   80 (259)
Q Consensus         3 ~p~~~--~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll   80 (259)
                      ||++.  ++.|.|..+.   +.++|.+|+|||+||...  .....+...+|+++|||+|||++|+|+||  |+|||||++
T Consensus        83 lP~~~~~~~~m~f~~~~---~~~~L~~g~~GI~EP~~~--~~~~~~~~~iDlvlVP~vAfD~~G~RLG~--GgGyYDR~L  155 (200)
T 2jcb_A           83 VPKCNKETRTMSFRQIS---NFDQLETVYMNLREPIPA--LTEEVNADEIDLQIVPGVAYTERGERIGY--GGGYYDRYL  155 (200)
T ss_dssp             EEEEETTTTEEEEEEES---SGGGEEEEETTEEEECGG--GCEECCGGGCSEEECCCSEECTTSCEECS--SSCHHHHHT
T ss_pred             EeEEEcCCCcEEEEEeC---CCcccccCCCCCCCCCCc--ccccCCccCCCEEEECCeEECCCCCeecc--CCchHHHHH
Confidence            68764  3457665554   567899999999999642  11133567899999999999999999999  999999999


Q ss_pred             ccccccccceEEeeccCC
Q psy17389         81 KHPVYEQSKRISIYVDRD   98 (259)
Q Consensus        81 ~~~~~~~a~~I~ly~s~~   98 (259)
                      +..  . ..+|++.++++
T Consensus       156 a~~--~-~~~igla~~~Q  170 (200)
T 2jcb_A          156 VHY--K-GKTLSLAYSFQ  170 (200)
T ss_dssp             TTC--C-SEEEEECCGGG
T ss_pred             hhc--C-CCEEEEEehhh
Confidence            852  2 26788888865

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6

Probab=99.48  E-value=1.1e-14  Score=122.07  Aligned_cols=80  Identities=25%  Similarity=0.308  Sum_probs=55.0

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      ||++.++.|.|..+   +   +|.+|+|||+|| ..    ......++|+++|||+|||++|+|+||  |+|||||+++.
T Consensus        67 lP~~~~~~m~f~~~---~---~L~~~~~gi~EP-~~----~~~~~~~iDlvlvP~vafD~~G~RLG~--GgGyYDR~L~~  133 (184)
T 1wkc_A           67 LPKVAGKGLTVHPF---G---PLAPGPFGLLEP-TT----PPEDPRVLDLVVVPGLAFDREGYRLGH--GQGFYDRFLKE  133 (184)
T ss_dssp             EEEEETTEEEEEES---C---CBC-------CB-CS----CCBCGGGCSEEEECCSEEETTSCEECC--SSCHHHHHHHH
T ss_pred             EeEEeCCceEEEEe---c---ccCCCCCCCCCC-CC----ccCCCCCCCEEEECcEEECCCCCEeeC--CccHHHHHHHh
Confidence            68763335655444   3   789999999999 32    122457899999999999999999999  99999999984


Q ss_pred             ccccccceEEeeccCC
Q psy17389         83 PVYEQSKRISIYVDRD   98 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~   98 (259)
                      .   +..+|++.++++
T Consensus       134 ~---~~~~igl~~~~Q  146 (184)
T 1wkc_A          134 V---RAATVGVVPQAL  146 (184)
T ss_dssp             C---CSEEEEECCGGG
T ss_pred             c---CCCEEEEEchhh
Confidence            2   346789888875

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*

Probab=98.91  E-value=4.5e-10  Score=94.25  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             CCCccEEEeccccccccCcccchhcccHHHHhhcccccccccceEEeeccCC
Q psy17389         47 TGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRD   98 (259)
Q Consensus        47 ~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~~~~~~a~~I~ly~s~~   98 (259)
                      ..++|++||||+|||++|+|+||  |+|||||+++... ....+|++.++++
T Consensus       121 ~~~iDlvlVP~vAfD~~G~RLG~--GgGyYDR~La~~~-~~~~~igla~~~Q  169 (189)
T 1sbq_A          121 PNQIDCFLIPLVGFNKDNYRLGF--GKGYYDRYLMQLT-RQQPKIGIAYSFQ  169 (189)
T ss_dssp             GGGCCEEEEECSEECTTCCEECC--SSCHHHHHGGGCC-SCCCEEEEECGGG
T ss_pred             cccCCEEEECceEECCCCCEeec--CCchHHHHHHhcC-CCCCEEEEechHh
Confidence            35689999999999999999999  9999999998532 1256799888865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1soua_	194	c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquif	2e-18
d1wkca_	175	c.124.1.6 (A:) Hypothetical protein TTHA1611 {Ther	4e-17
d1sbqa_	164	c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synth	2e-16

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]} Length = 194

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

 Score = 78.8 bits (193), Expect = 2e-18
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 34/177 (19%)

Query: 79  FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
               P +++SK++++Y     E+    +   +    +                  +  S 
Sbjct: 33  LKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLKEKELILPKVE----GNEISLYRVHSP 88

Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
                                                    + +    +D + VPG AF 
Sbjct: 89  ACLGVGA-------------------------FGIMEPVEGERVNPEDVDFIAVPGVAFD 123

Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
             G R+G GKGYYD  L  +K        +G+A+S Q+ E LP    D+P+D ++  
Sbjct: 124 LEGYRLGFGKGYYDRLLKRVK-----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTE 175

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

 Score = 74.5 bits (182), Expect = 4e-17
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)

Query: 187 LDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHD 246
           LDLVVVPG AF   G R+G G+G+YD +L E++       T+G+     +   LP    D
Sbjct: 103 LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWD 157

Query: 247 VPLDYVIHP 255
           VP+D++   
Sbjct: 158 VPVDHLATE 166

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

 Score = 72.5 bits (177), Expect = 2e-16
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 188 DLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDV 247
           D  ++P   F +   R+G GKGYYD YL +L         IG+A+S Q   D      DV
Sbjct: 100 DCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKG-DFLADPWDV 155

Query: 248 PLDYVIHP 255
            LD +I+ 
Sbjct: 156 QLDLIIND 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1soua_	194	Hypothetical protein aq_1731 {Aquifex aeolicus [Ta	100.0
d1wkca_	175	Hypothetical protein TTHA1611 {Thermus thermophilu	100.0
d1sbqa_	164	5,10-methenyltetrahydrofolate synthetase homolog M	100.0
d1soua_	194	Hypothetical protein aq_1731 {Aquifex aeolicus [Ta	99.62
d1wkca_	175	Hypothetical protein TTHA1611 {Thermus thermophilu	99.57
d1sbqa_	164	5,10-methenyltetrahydrofolate synthetase homolog M	99.07

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=2.1e-46  Score=316.16  Aligned_cols=154  Identities=27%  Similarity=0.507  Sum_probs=135.9

Q ss_pred             cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeecccccccchhhcceeeee
Q psy17389         71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRE  150 (259)
Q Consensus        71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (259)
                      +|..++++++++..++++++|++|+|+++||||.+|++.+++ +|+|++|++.+++|.|                     
T Consensus        25 ~s~~i~~~l~~~~~~~~~~~I~~Y~p~~~Evdt~~li~~l~~-~k~v~lP~i~~~~m~~---------------------   82 (194)
T d1soua_          25 LSEKVISNLKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLK-EKELILPKVEGNEISL---------------------   82 (194)
T ss_dssp             HHHHHHHHHHHCHHHHHCCEEEECCCCSSCCCCGGGHHHHHH-HSEEEEEEESSSSEEE---------------------
T ss_pred             HHHHHHHHHHHhHHhhcCCEEEEEecccccCChHHHHHHHhh-cccccccccchhceee---------------------
Confidence            388999999998888899999999999999999999999987 5799999998877877                     


Q ss_pred             EEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEE
Q psy17389        151 LVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGL  230 (259)
Q Consensus       151 ~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl  230 (259)
                      +.+.   ..+.|..|+|||+||....    .+.+.++|+|||||||||++|+|||||||||||||+.++     +.+|||
T Consensus        83 ~~~~---~~~~l~~~~~gI~EP~~~~----~~~~~~iDlilVP~lafD~~G~RlG~G~GyYDR~L~~~~-----~~~igl  150 (194)
T d1soua_          83 YRVH---SPACLGVGAFGIMEPVEGE----RVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRVK-----GLKVGV  150 (194)
T ss_dssp             EEES---SSCCCEECSSSCEECCSSE----EECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHHHHHCC-----SEEEEE
T ss_pred             eccC---CCcccccccccccCCCccc----cccccccceehhhHHHHhhcCCccccCCEeHHHhhhccC-----CCEEEE
Confidence            4443   2356899999999997532    234567999999999999999999999999999999873     578999


Q ss_pred             ecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        231 AFSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       231 ~~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      ||++|+++++|.|+||++||+||||+|+
T Consensus       151 ~~~~Q~~~~ip~e~hD~~ld~iiTe~~i  178 (194)
T d1soua_         151 AYSFQVFERLPRDAWDIPVDVLVTEKNV  178 (194)
T ss_dssp             CCGGGBCSCCCCCSCCCCCSEEECSSCE
T ss_pred             EecceecCCCCCCCcCeECCEEEEccce
Confidence            9999999999999999999999999984

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-45  Score=305.15  Aligned_cols=147  Identities=25%  Similarity=0.441  Sum_probs=122.1

Q ss_pred             ccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeecccccccchhhcceeeeeE
Q psy17389         72 SWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLREL  151 (259)
Q Consensus        72 s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (259)
                      +..+.++++++..++.+++|++|+|+.+||||.++++.   .||+|++|++..+.|.|                      
T Consensus        23 s~~i~~~l~~~~~~~~~~~I~~Y~p~~~Evdt~~li~~---~~k~v~lP~i~~~~l~~----------------------   77 (175)
T d1wkca_          23 SRAVGAALLPWLRERGFRHILLYHPLPHELNLLPLMEA---YPARYYLPKVAGKGLTV----------------------   77 (175)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEECCCCCTTCCCCTTHHHH---SCCEEEEEEEETTEEEE----------------------
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEeECCccCcchhhhc---ccceeeeecccccceee----------------------
Confidence            77889999988778889999999999999999999875   48999999998776655                      


Q ss_pred             EEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEe
Q psy17389        152 VLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLA  231 (259)
Q Consensus       152 ~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~  231 (259)
                        +++   ++|++|+|||+||.....     ....+|+||||+||||++|+|||||||||||||+.++     ..+||+|
T Consensus        78 --~~~---~~l~~~~~gI~EP~~~~~-----~~~~~DliivP~vafD~~G~RlG~G~GyYDR~L~~~~-----~~~igl~  142 (175)
T d1wkca_          78 --HPF---GPLAPGPFGLLEPTTPPE-----DPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVV  142 (175)
T ss_dssp             --EES---CCBC-------CBCSCCB-----CGGGCSEEEECCSEEETTSCEECCSSCHHHHHHHHCC-----SEEEEEC
T ss_pred             --cch---hhcchhhhhccccccccc-----ccccccEEEeeehheeecCcccccCcchHHHHHhhcC-----CCEEEEE
Confidence              233   358899999999975431     2346899999999999999999999999999999873     5789999


Q ss_pred             cCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389        232 FSCQMVEDLPMSDHDVPLDYVIHPLST  258 (259)
Q Consensus       232 ~~~Q~~~~ip~e~~D~~ld~iiTe~~~  258 (259)
                      |++|+++++|.|+||++||+||||+|.
T Consensus       143 ~~~q~~~~ip~e~hDi~ld~iiTe~gi  169 (175)
T d1wkca_         143 PQALLFPALPRDPWDVPVDHLATEAGV  169 (175)
T ss_dssp             CGGGEESCCCCCTTCCCCSEEEETTEE
T ss_pred             ehhheeCCCCCCcccccCCEEEeCccc
Confidence            999999999999999999999999974

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=100.00  E-value=6.1e-40  Score=269.44  Aligned_cols=137  Identities=23%  Similarity=0.383  Sum_probs=113.7

Q ss_pred             cccHHHHhhccccccc-ccceEEeeccCCCCCChHHHHHHHHhCCC-EEEEceeecCC-ceeeeecccccccchhhccee
Q psy17389         71 FSWPYIGCFLKHPVYE-QSKRISIYVDRDDEISTRKIIQHICSSGK-ECFIPRYDKTE-MTMRIFRQTWSGEATLRSRVV  147 (259)
Q Consensus        71 ~s~~i~drll~~~~~~-~a~~I~ly~s~~~Ev~t~~li~~~~~~gk-~v~lP~~~~~~-~~~~~~~~~~~~~~~~~~~~~  147 (259)
                      .|..+.++++++..+. .+++|++|+|+.+||||.+++..+++.++ ++++|++..+. |.|                  
T Consensus        25 ~s~~i~~~l~~~~~~~~~~~~I~~Y~p~~~Evd~~~l~~~~l~~~~~~~~~P~i~~~~~~~~------------------   86 (164)
T d1sbqa_          25 LDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQIRAVYPKVISDTEIIF------------------   86 (164)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCEEECCCCCTTSCCCCHHHHHHHHHTTCEEEEEEECSSSCEEE------------------
T ss_pred             HHHHHHHHHHHhhhhhhhcCEEEEEeccCCcccchHHHHHHHHcCCeEEEEeeccCccccee------------------
Confidence            3788888888754444 45899999999999999999988887665 89999986553 433                  


Q ss_pred             eeeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccE
Q psy17389        148 LRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKT  227 (259)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~  227 (259)
                                     ....+|+.||.            ++|+||||+||||++|+|||||||||||||+++..   ++.+
T Consensus        87 ---------------~~~~~~~~eP~------------~iDliivP~lafD~~G~RLGyGgGyYDR~L~~~~~---~~~~  136 (164)
T d1sbqa_          87 ---------------IDQETNTFEPN------------QIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTR---QQPK  136 (164)
T ss_dssp             ---------------ECTTCCEECGG------------GCCEEEEECSEECTTCCEECCSSCHHHHHGGGCCS---CCCE
T ss_pred             ---------------ccccccccCCc------------ccCEEEeeeheeeeecCccccccChHHHHHHhcCC---CCCE
Confidence                           12456787773            47999999999999999999999999999998754   3678


Q ss_pred             EEEecCcccccCCCCCCCCccCCEEEcCC
Q psy17389        228 IGLAFSCQMVEDLPMSDHDVPLDYVIHPL  256 (259)
Q Consensus       228 igl~~~~Q~~~~ip~e~~D~~ld~iiTe~  256 (259)
                      |||||++|+++ +|.|+||++||+||||+
T Consensus       137 igla~~~Q~~~-~~~e~hDi~ld~iiTek  164 (164)
T d1sbqa_         137 IGIAYSFQKGD-FLADPWDVQLDLIINDE  164 (164)
T ss_dssp             EEEECGGGBCC-CCCCTTSCCCSEEEECC
T ss_pred             EEEEehhhccC-CCCCcccccCCEEeCCC
Confidence            99999999876 55699999999999995

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.62  E-value=7.7e-17  Score=134.19  Aligned_cols=84  Identities=19%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      ||++.++.|.|..+.   +.+.|.+|+|||+||...    ..+.+.++|+++||++|||++|+|+||  |+|||||+++.
T Consensus        72 lP~i~~~~m~~~~~~---~~~~l~~~~~gI~EP~~~----~~~~~~~iDlilVP~lafD~~G~RlG~--G~GyYDR~L~~  142 (194)
T d1soua_          72 LPKVEGNEISLYRVH---SPACLGVGAFGIMEPVEG----ERVNPEDVDFIAVPGVAFDLEGYRLGF--GKGYYDRLLKR  142 (194)
T ss_dssp             EEEESSSSEEEEEES---SSCCCEECSSSCEECCSS----EEECGGGCSEEEECCSCBCSSSCBCCS--CCSSHHHHHHH
T ss_pred             ccccchhceeeeccC---CCcccccccccccCCCcc----ccccccccceehhhHHHHhhcCCcccc--CCEeHHHhhhc
Confidence            788888888776654   567899999999999652    234677899999999999999999999  99999999985


Q ss_pred             ccccccceEEeeccCC
Q psy17389         83 PVYEQSKRISIYVDRD   98 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~   98 (259)
                         .++.+||+.++++
T Consensus       143 ---~~~~~igl~~~~Q  155 (194)
T d1soua_         143 ---VKGLKVGVAYSFQ  155 (194)
T ss_dssp             ---CCSEEEEECCGGG
T ss_pred             ---cCCCEEEEEecce
Confidence               2466899988865

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=3.5e-16  Score=128.08  Aligned_cols=80  Identities=25%  Similarity=0.355  Sum_probs=58.4

Q ss_pred             cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389          3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH   82 (259)
Q Consensus         3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~   82 (259)
                      ||++.++.|.|   +.+   ++|++|+|||+||...     ..+...+|+++||++|||.+|+|+||  |+|||||+++.
T Consensus        67 lP~i~~~~l~~---~~~---~~l~~~~~gI~EP~~~-----~~~~~~~DliivP~vafD~~G~RlG~--G~GyYDR~L~~  133 (175)
T d1wkca_          67 LPKVAGKGLTV---HPF---GPLAPGPFGLLEPTTP-----PEDPRVLDLVVVPGLAFDREGYRLGH--GQGFYDRFLKE  133 (175)
T ss_dssp             EEEEETTEEEE---EES---CCBC-------CBCSC-----CBCGGGCSEEEECCSEEETTSCEECC--SSCHHHHHHHH
T ss_pred             eecccccceee---cch---hhcchhhhhccccccc-----ccccccccEEEeeehheeecCccccc--CcchHHHHHhh
Confidence            78888877654   433   4699999999999752     23456789999999999999999999  99999999975


Q ss_pred             ccccccceEEeeccCC
Q psy17389         83 PVYEQSKRISIYVDRD   98 (259)
Q Consensus        83 ~~~~~a~~I~ly~s~~   98 (259)
                         .+..+|++.++++
T Consensus       134 ---~~~~~igl~~~~q  146 (175)
T d1wkca_         134 ---VRAATVGVVPQAL  146 (175)
T ss_dssp             ---CCSEEEEECCGGG
T ss_pred             ---cCCCEEEEEehhh
Confidence               2456899988875

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=99.07  E-value=2.7e-11  Score=97.40  Aligned_cols=58  Identities=19%  Similarity=0.286  Sum_probs=47.4

Q ss_pred             ccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhcccccccccceEEeeccCC
Q psy17389         26 IKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRD   98 (259)
Q Consensus        26 ~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~~~~~~a~~I~ly~s~~   98 (259)
                      ..+.+|+.||.            ++|+++||++|||++|+|+||  |+|||||+++... ++..+||++++++
T Consensus        87 ~~~~~~~~eP~------------~iDliivP~lafD~~G~RLGy--GgGyYDR~L~~~~-~~~~~igla~~~Q  144 (164)
T d1sbqa_          87 IDQETNTFEPN------------QIDCFLIPLVGFNKDNYRLGF--GKGYYDRYLMQLT-RQQPKIGIAYSFQ  144 (164)
T ss_dssp             ECTTCCEECGG------------GCCEEEEECSEECTTCCEECC--SSCHHHHHGGGCC-SCCCEEEEECGGG
T ss_pred             ccccccccCCc------------ccCEEEeeeheeeeecCcccc--ccChHHHHHHhcC-CCCCEEEEEehhh
Confidence            34567887772            369999999999999999999  9999999998532 3456799998876