Psyllid ID: psy17390

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
MDHSITSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPGEQINSLVRTKFWCELERKCLISRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVKYGRKRHFEKGETKKQYGGLEEN
cccccccccccHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHccccEEEccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHcccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccEEEEEEHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHcEEEcEEEEEEEEEEccEEEEcccccEEEccccccHHHHHccccccccccccHHHHHHHHHHccHHHHHccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHccHEEEEEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEccEccEEEEEEEEEEEEEEcccccEEccccccHHHHHHHHHHHHHHHccccccccccccccHccccccc
mdhsitsyalnPIWMELLMggsqhlfyctygthhgrpgeqinSLVRTKFWCELERKCLtigthhgrpgeqinSLVRTKFWCELERKCLisrsngpdtlpiiplppvrclfrntrtsnfwlskakvGSQKLRKLLKLTLTqfselpfgvlgnGTLVLIFARHknmrsvpnTYILSLALGDLLVIICGvpftstlytleswpygphicklseatrdisIGVSVFTLTALSAERYCAIVNpirshisskpltIVTAFAIWVLAIILALPsalfshvqpattasndtiyfcspfpieygqqYKQTVVLCKFLAYYLGPLCVIACFYILMARHLElstrnmpgellgqssqSRARKKVAKMVSVLASStlastlspyTSLVVCLGNISTGICSVVVHLAVNynmmspwchsivppvedSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVkygrkrhfekgetkkqyggleen
MDHSITSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTigthhgrpgeqinsLVRTKFWCELERKCLIsrsngpdtlpiiplppVRCLFRNTRtsnfwlskakvgsqKLRKLLKLTLTqfselpfgvlGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPirshisskpLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASstlastlspYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLvkygrkrhfekgetkkqyggleen
MDHSITSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPGEQINSLVRTKFWCELERKCLISRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQklrkllkltltQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMvsvlasstlastlsPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVKYGRKRHFEKGETKKQYGGLEEN
*****TSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPGEQINSLVRTKFWCELERKCLISRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLEL************************MVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVKYGR*******************
***S*TSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTI*************LVRTKFW***********************PPVRCLFRNTRTSNFWLSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLEL***********************KMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYF***********QCQMVLENMKLVKYGRK******************
MDHSITSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPGEQINSLVRTKFWCELERKCLISRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELL****************SVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVKYGRKRHFEKG************
***SITSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPGEQINSLVRTKFWCELERKCLIS********PI*****************FWLSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELST**************RARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVKYGRKRHF***************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDHSITSYALNPIWMELLMGGSQHLFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPGEQINSLVRTKFWCELERKCLISRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLVKYGRKRHFEKGETKKQYGGLEEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
P28336390 Neuromedin-B receptor OS= yes N/A 0.408 0.546 0.416 9e-35
P24053390 Neuromedin-B receptor OS= yes N/A 0.408 0.546 0.416 1e-34
P47751392 [Phe13]-bombesin receptor N/A N/A 0.411 0.548 0.397 2e-34
Q8K418399 Bombesin receptor subtype no N/A 0.473 0.619 0.385 4e-34
Q6H2Y3398 Bombesin receptor subtype no N/A 0.471 0.618 0.380 4e-34
O54799390 Neuromedin-B receptor OS= yes N/A 0.408 0.546 0.412 9e-34
P32247399 Bombesin receptor subtype no N/A 0.473 0.619 0.374 2e-33
O54798399 Bombesin receptor subtype no N/A 0.473 0.619 0.377 2e-33
O97967399 Bombesin receptor subtype N/A N/A 0.411 0.538 0.406 3e-32
P35371399 Bombesin receptor subtype no N/A 0.473 0.619 0.377 1e-30
>sp|P28336|NMBR_HUMAN Neuromedin-B receptor OS=Homo sapiens GN=NMBR PE=1 SV=2 Back     alignment and function desciption
 Score =  148 bits (374), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 131/216 (60%), Gaps = 3/216 (1%)

Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
           G+LGN  LV IF  +  MRSVPN +I +LA GDLL+++  VP  ++ Y  + W +G   C
Sbjct: 57  GLLGNIMLVKIFITNSAMRSVPNIFISNLAAGDLLLLLTCVPVDASRYFFDEWMFGKVGC 116

Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPL-TIVTAFAIWVLAIILAL 265
           KL    +  S+GVSVFTLTALSA+RY AIVNP+    S   L T V A  IWV++++LA+
Sbjct: 117 KLIPVIQLTSVGVSVFTLTALSADRYRAIVNPMDMQTSGALLRTCVKAMGIWVVSVLLAV 176

Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILM 325
           P A+FS V   ++  N +   C P+P +  + + +   +  FL Y+L PL +I+ +Y  +
Sbjct: 177 PEAVFSEVARISSLDNSSFTACIPYP-QTDELHPKIHSVLIFLVYFLIPLAIISIYYYHI 235

Query: 326 ARHLELSTRNMPGELLGQS-SQSRARKKVAKMVSVL 360
           A+ L  S  N+PGE    +  Q   RK++AK+V V 
Sbjct: 236 AKTLIKSAHNLPGEYNEHTKKQMETRKRLAKIVLVF 271
Receptor for neuromedin-B.
Homo sapiens (taxid: 9606)
>sp|P24053|NMBR_RAT Neuromedin-B receptor OS=Rattus norvegicus GN=Nmbr PE=2 SV=1 Back     alignment and function description
>sp|P47751|BRS4_BOMOR [Phe13]-bombesin receptor OS=Bombina orientalis GN=BB4 PE=2 SV=2 Back     alignment and function description
>sp|Q8K418|BRS3_RAT Bombesin receptor subtype-3 OS=Rattus norvegicus GN=Brs3 PE=2 SV=1 Back     alignment and function description
>sp|Q6H2Y3|BRS3_MACMU Bombesin receptor subtype-3 OS=Macaca mulatta GN=BRS3 PE=2 SV=1 Back     alignment and function description
>sp|O54799|NMBR_MOUSE Neuromedin-B receptor OS=Mus musculus GN=Nmbr PE=2 SV=1 Back     alignment and function description
>sp|P32247|BRS3_HUMAN Bombesin receptor subtype-3 OS=Homo sapiens GN=BRS3 PE=1 SV=1 Back     alignment and function description
>sp|O54798|BRS3_MOUSE Bombesin receptor subtype-3 OS=Mus musculus GN=Brs3 PE=2 SV=1 Back     alignment and function description
>sp|O97967|BRS3_SHEEP Bombesin receptor subtype-3 OS=Ovis aries GN=BRS3 PE=2 SV=1 Back     alignment and function description
>sp|P35371|BRS3_CAVPO Bombesin receptor subtype-3 OS=Cavia porcellus GN=BRS3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
328717134377 PREDICTED: Phe13-bombesin receptor-like 0.402 0.557 0.720 7e-81
383857705 632 PREDICTED: LOW QUALITY PROTEIN: neuromed 0.404 0.333 0.674 5e-75
307169630 667 Neuromedin-B receptor [Camponotus florid 0.409 0.320 0.669 4e-74
345482154 627 PREDICTED: neuromedin-B receptor-like [N 0.404 0.336 0.658 6e-73
328779608 648 PREDICTED: gastrin-releasing peptide rec 0.409 0.330 0.659 8e-73
380017471 641 PREDICTED: gastrin-releasing peptide rec 0.409 0.333 0.654 1e-72
350405972 627 PREDICTED: neuromedin-B receptor-like [B 0.409 0.341 0.645 1e-71
307203146411 Neuromedin-B receptor [Harpegnathos salt 0.402 0.510 0.672 9e-67
242023733404 class A rhodopsin-like G-protein coupled 0.404 0.522 0.590 7e-65
332022554574 Neuromedin-B receptor [Acromyrmex echina 0.371 0.337 0.628 6e-64
>gi|328717134|ref|XP_001943863.2| PREDICTED: Phe13-bombesin receptor-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 178/215 (82%), Gaps = 5/215 (2%)

Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
           GVLGNGTLVL+F RH++MRSVPNTYILSLALGDLLVII  VPFTST+YT+ESWPYG  IC
Sbjct: 45  GVLGNGTLVLVFIRHRSMRSVPNTYILSLALGDLLVIITCVPFTSTVYTVESWPYGELIC 104

Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALP 266
           KLSEAT+D+SIGVSVFTLTALSAERYCAIVNPIR H+SSKP T++TA AIW+LA++LA P
Sbjct: 105 KLSEATKDVSIGVSVFTLTALSAERYCAIVNPIRRHVSSKPFTLMTAVAIWILAVVLATP 164

Query: 267 SALFSHV--QPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYIL 324
           SA FSH+  +P    +N TI +C PFP+E G  Y   +V+ K L YY+ PLCVI CFY+L
Sbjct: 165 SATFSHLATEPIPN-TNMTIEYCYPFPMELGSGYAHGMVMFKLLTYYVVPLCVIGCFYLL 223

Query: 325 MARHLELSTRNMPGEL--LGQSSQSRARKKVAKMV 357
           MA HL +STRNMPGEL   GQS Q RARKKVAKMV
Sbjct: 224 MAHHLMVSTRNMPGELQHAGQSGQIRARKKVAKMV 258

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383857705|ref|XP_003704344.1| PREDICTED: LOW QUALITY PROTEIN: neuromedin-B receptor-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307169630|gb|EFN62213.1| Neuromedin-B receptor [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345482154|ref|XP_001604277.2| PREDICTED: neuromedin-B receptor-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328779608|ref|XP_396992.4| PREDICTED: gastrin-releasing peptide receptor-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380017471|ref|XP_003692679.1| PREDICTED: gastrin-releasing peptide receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|350405972|ref|XP_003487615.1| PREDICTED: neuromedin-B receptor-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307203146|gb|EFN82325.1| Neuromedin-B receptor [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242023733|ref|XP_002432285.1| class A rhodopsin-like G-protein coupled receptor GPRgrp, putative [Pediculus humanus corporis] gi|212517708|gb|EEB19547.1| class A rhodopsin-like G-protein coupled receptor GPRgrp, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|332022554|gb|EGI62856.1| Neuromedin-B receptor [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
FB|FBgn0033058489 CCHa2r "CCHamide-2 receptor" [ 0.394 0.421 0.572 4.6e-57
FB|FBgn0050106499 CCHa1r "CCHamide-1 receptor" [ 0.394 0.412 0.523 3.1e-51
UNIPROTKB|E1BRP1388 NMBR "Uncharacterized protein" 0.400 0.538 0.443 1.5e-37
UNIPROTKB|Q802E6396 BRS3.5 "Uncharacterized protei 0.394 0.520 0.415 8e-37
ZFIN|ZDB-GENE-041014-369377 nmbr "neuromedin B receptor" [ 0.398 0.551 0.429 1e-36
UNIPROTKB|P28336390 NMBR "Neuromedin-B receptor" [ 0.400 0.535 0.415 3.5e-36
RGD|3181390 Nmbr "neuromedin B receptor" [ 0.400 0.535 0.415 4.4e-36
RGD|628645399 Brs3 "bombesin-like receptor 3 0.398 0.521 0.419 4.4e-36
UNIPROTKB|E2R124399 BRS3 "Uncharacterized protein" 0.398 0.521 0.400 9.2e-36
UNIPROTKB|E1BMN4390 NMBR "Uncharacterized protein" 0.400 0.535 0.410 1.5e-35
FB|FBgn0033058 CCHa2r "CCHamide-2 receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 123/215 (57%), Positives = 156/215 (72%)

Query:   147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
             GVLGNGTLV+IF RH++MR++PNTYILSLAL DLLVI+  VP  + +YT ESWP+  ++C
Sbjct:    83 GVLGNGTLVIIFFRHRSMRNIPNTYILSLALADLLVILVCVPVATIVYTQESWPFERNMC 142

Query:   207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALP 266
             ++SE  +DISIGVSVFTLTALS ERYCAIVNP+R  + +KPLT+ TA  IW+LAI+L +P
Sbjct:   143 RISEFFKDISIGVSVFTLTALSGERYCAIVNPLRK-LQTKPLTVFTAVMIWILAILLGMP 201

Query:   267 SALFSHVQ--PATTAS-NDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYI 323
             S LFS ++  P  TA+ N TI  CSPF      +Y + +V  K L YYL PL +I   YI
Sbjct:   202 SVLFSDIKSYPVFTATGNMTIEVCSPFR---DPEYAKFMVAGKALVYYLLPLSIIGALYI 258

Query:   324 LMARHLELSTRNMPGELLGQSS--QSRARKKVAKM 356
             +MA+ L +S RNMPGE     S  Q+RAR  VA+M
Sbjct:   259 MMAKRLHMSARNMPGEQQSMQSRTQARARLHVARM 293
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS;IDA
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS
GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA
GO:0004946 "bombesin receptor activity" evidence=IEA
GO:0031989 "bombesin receptor signaling pathway" evidence=IEA
GO:0007218 "neuropeptide signaling pathway" evidence=IDA
FB|FBgn0050106 CCHa1r "CCHamide-1 receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRP1 NMBR "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q802E6 BRS3.5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-369 nmbr "neuromedin B receptor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P28336 NMBR "Neuromedin-B receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3181 Nmbr "neuromedin B receptor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|628645 Brs3 "bombesin-like receptor 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R124 BRS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BMN4 NMBR "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 1e-35
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 1e-11
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 4e-09
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 1e-08
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  132 bits (335), Expect = 1e-35
 Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 9/257 (3%)

Query: 156 LIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDI 215
           L+  R K +R+  N ++L+LA+ DLL ++   P+         WP+G  +CKL      +
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 216 SIGVSVFTLTALSAERYCAIVNPIRSH-ISSKPLTIVTAFAIWVLAIILALPSALFSHVQ 274
           +   S+  LTA+S +RY AIV+P+R   I +     V    +WVLA++L+LP  LFS + 
Sbjct: 61  NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWL- 119

Query: 275 PATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTR 334
              T     +  C     E   +   +  L   L  ++ PL VI   Y L+ R L    R
Sbjct: 120 --RTVEEGNVTTCLIDFPEESTKR--SYTLLSTLLGFVLPLLVILVCYTLILRTLRKRAR 175

Query: 335 NMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLA 394
           +   +   + S S   +K AKM+ V+          PY  +V+ L ++       ++  A
Sbjct: 176 SGASQARAKRS-SSKERKAAKMLLVV-VVVFVLCWLPYH-IVLLLDSLCPLSIWRLLPTA 232

Query: 395 VNYNMMSPWCHSIVPPV 411
           +   +   + +S + P+
Sbjct: 233 LLITLWLAYVNSCLNPI 249

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
KOG4220|consensus503 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
KOG2087|consensus363 99.96
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.77
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.76
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.63
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.47
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.41
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.27
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.03
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.9
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.8
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.76
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.71
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.38
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.33
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 98.27
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 98.25
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.21
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 98.08
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.03
KOG4193|consensus610 98.02
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 98.0
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 97.99
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 97.89
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 97.25
KOG4564|consensus473 96.92
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 96.55
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 96.49
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 96.28
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 94.17
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 92.04
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 89.12
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 89.07
PF06454281 DUF1084: Protein of unknown function (DUF1084); In 85.89
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-43  Score=350.66  Aligned_cols=298  Identities=21%  Similarity=0.264  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhh
Q psy17390        131 RKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSE  210 (522)
Q Consensus       131 ~~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~  210 (522)
                      ....++.++++++.+++++||++|+|++..+|++|+.+|+|++|||+||++++++..++.........|.+|...|++..
T Consensus        33 ~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~n  112 (423)
T KOG4219|consen   33 WQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVN  112 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeecc
Confidence            45678899999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCC
Q psy17390        211 ATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPF  290 (522)
Q Consensus       211 ~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~  290 (522)
                      |+..+...+|+++|++||+|||.||.||++.+ .++|.+.++|+++|++|+++++|..+..........++.....|...
T Consensus       113 f~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~  191 (423)
T KOG4219|consen  113 FFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR-PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTA  191 (423)
T ss_pred             ccchhhhhHhHHHHHHHHHHHHHHHhhhcccC-CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEe
Confidence            99999999999999999999999999999987 89999999999999999999999999888777665445555667643


Q ss_pred             Cccc---chhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHH
Q psy17390        291 PIEY---GQQYK---QTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASST  364 (522)
Q Consensus       291 ~~~~---~~~~~---~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f  364 (522)
                      +.+.   .....   +.|...+.++.+++|++++...|.+|.+++|+++. ...++.++.++.++++|+.||+++|+++|
T Consensus       192 ~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~-~gd~~d~~~~~~kak~K~vkmliiVV~~F  270 (423)
T KOG4219|consen  192 WPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI-PGDQQDRKHEQLKAKKKVVKMLIIVVVIF  270 (423)
T ss_pred             cccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC-ccchhchhhHHHHHHHHHHHHHHHHHHHH
Confidence            2221   11111   23777777888999999999999999999998763 22333345567789999999999999999


Q ss_pred             HHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCcc
Q psy17390        365 LASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVY  435 (522)
Q Consensus       365 ~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~  435 (522)
                      .+| |+||+++.++....+.-.........+....|++..|+|.||+||.+++    .+++.+|++.||+.
T Consensus       271 aic-WlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN----~Rfr~gf~~~fr~c  336 (423)
T KOG4219|consen  271 AIC-WLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLN----KRFRGGFRRAFRWC  336 (423)
T ss_pred             HHh-ccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhH----HHHHHHHhhhhhee
Confidence            999 9999999988754433333444555667788999999999999775544    55556666666544

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-20
4djh_A480 Structure Of The Human Kappa Opioid Receptor In Com 2e-18
4ej4_A461 Structure Of The Delta Opioid Receptor Bound To Nal 1e-17
4dkl_A464 Crystal Structure Of The Mu-Opioid Receptor Bound T 5e-15
3odu_A502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 7e-14
3oe6_A508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 7e-14
3oe0_A499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 8e-14
2ks9_A364 Solution Conformation Of Substance P In Water Compl 7e-12
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 2e-09
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 1e-08
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 1e-08
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 1e-08
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 1e-08
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 1e-08
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-08
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 2e-08
3d4s_A490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 3e-08
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-08
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-08
3pds_A458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 6e-08
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 7e-08
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 7e-08
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 7e-08
3p0g_A501 Structure Of A Nanobody-Stabilized Active State Of 1e-07
2rh1_A500 High Resolution Crystal Structure Of Human B2-Adren 1e-07
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 1e-07
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 1e-07
3vw7_A484 Crystal Structure Of Human Protease-Activated Recep 2e-05
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 2e-05
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 2e-05
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 4e-05
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 4e-05
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 5e-05
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 2e-04
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 4e-04
4eiy_A447 Crystal Structure Of The Chimeric Protein Of A2aar- 4e-04
3eml_A488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 6e-04
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 6e-04
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure 
Iteration: 1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
           G+LGN  ++ +  RH  M++  N YI +LAL D LV++  +PF  T   L  WP+G  +C
Sbjct: 139 GLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNALC 197
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRS---HISSKPLTIVTAFAIWVLAIIL 263
           K   A    ++  S FTLTA+S +RY AI +PIR+     SSK   +    AIW LA ++
Sbjct: 198 KTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAV--NVAIWALASVV 255
Query: 264 ALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYI 323
            +P A+    Q         +    P P +Y   +     +C FL  ++ P+ VI+  Y 
Sbjct: 256 GVPVAIMGSAQVEDEEIECLVEI--PTPQDY---WGPVFAICIFLFSFIVPVLVISVCYS 310
Query: 324 LMARHLE 330
           LM R L 
Sbjct: 311 LMIRRLR 317
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 9e-68
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 9e-56
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-40
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 3e-39
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 4e-35
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 4e-28
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-21
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 1e-21
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 4e-21
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 1e-20
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 1e-19
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-19
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 6e-19
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 2e-18
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 5e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  221 bits (565), Expect = 9e-68
 Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 10/216 (4%)

Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
             V+GN  ++ I   HK MR+V N ++++LA  +  +         T      W YG   
Sbjct: 45  TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFY 104

Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
           CK        ++  S++++TA++ +RY AI++P++  + S   T V    IWVLA++LA 
Sbjct: 105 CKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL-SATATKVVICVIWVLALLLAF 163

Query: 266 PSALFSHVQPATTASNDTIYFCSP-FPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYIL 324
           P   +S  +        +   C   +P    + Y++   +C  +  Y  PL VI   Y +
Sbjct: 164 PQGYYSTTET-----MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTV 218

Query: 325 MARHLELSTRNMPGELLG-QSSQSRARKKVAKMVSV 359
           +     L    +PG+       Q  A++KV KM+ V
Sbjct: 219 VGIT--LWASEIPGDSSDRYHEQVSAKRKVVKMMIV 252
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.3
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 97.46
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 96.88
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 95.34
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 90.66
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 83.2
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 81.38
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=6.7e-44  Score=384.09  Aligned_cols=297  Identities=19%  Similarity=0.255  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCC---CchhHHhHHHHHHHHHHHhcchhhhhhhhcc--ccccccccc
Q psy17390        131 RKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMR---SVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGPHI  205 (522)
Q Consensus       131 ~~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr---~~~~~li~nLAvaDll~~l~~lp~~i~~~~~--~~~~~~~~~  205 (522)
                      ...++++++|.+++++|++||++|++++.++|++|   +++|+|++|||+||++++++.+|+.+...+.  +.|.+|+.+
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~  109 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAG  109 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHH
Confidence            44567888999999999999999999999877655   6889999999999999999999998876553  579999999


Q ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhcccccccc-CCCc
Q psy17390        206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTA-SNDT  283 (522)
Q Consensus       206 C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~-~~~~  283 (522)
                      |++..++..++..+|+++|++||+|||+||++|++|+. .+++++..+++++|++++++++|+++.++....... ....
T Consensus       110 C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~  189 (510)
T 4grv_A          110 CRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPG  189 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCC
Confidence            99999999999999999999999999999999999987 899999999999999999999999998776543322 2223


Q ss_pred             eEEecCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------------------------
Q psy17390        284 IYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPG-------------------------  338 (522)
Q Consensus       284 ~~~C~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~-------------------------  338 (522)
                      ...|.+.+..   .....|.++.+++.|++|+++|+++|.+|+++++++.+....                         
T Consensus       190 ~~~c~~~~~~---~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (510)
T 4grv_A          190 GLVCTPIVDT---ATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGH  266 (510)
T ss_dssp             GEEEEECSCH---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTE
T ss_pred             cccccccccc---chhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccccccc
Confidence            4567654432   445567777778889999999999999999999864321000                         


Q ss_pred             --------------------------------------------------------------------------------
Q psy17390        339 --------------------------------------------------------------------------------  338 (522)
Q Consensus       339 --------------------------------------------------------------------------------  338 (522)
                                                                                                      
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  346 (510)
T 4grv_A          267 LLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGV  346 (510)
T ss_dssp             ECCCSSSHHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCC
Confidence                                                                                            


Q ss_pred             ----------------------------------------------CccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy17390        339 ----------------------------------------------ELLGQSSQSRARKKVAKMVSVLASSTLASTLSPY  372 (522)
Q Consensus       339 ----------------------------------------------~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~  372 (522)
                                                                    ......+..++++|++||+++|+++|++| |+||
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iC-WlPf  425 (510)
T 4grv_A          347 AGFTNSLRMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVC-WLPY  425 (510)
T ss_dssp             TTCHHHHHHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             CCCCccccccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence                                                          00000112246789999999999999999 9999


Q ss_pred             HHHHHHhhcccCCcch----hhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCcc
Q psy17390        373 TSLVVCLGNISTGICS----VVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVY  435 (522)
Q Consensus       373 ~i~~l~~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~  435 (522)
                      +++.++..+.+.....    ....+...+..+|.|+|||+||+||++++.-    ||+.|+|.++|+
T Consensus       426 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~----FR~aFk~iL~C~  488 (510)
T 4grv_A          426 HVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSAN----FRQVFLSTLACL  488 (510)
T ss_dssp             HHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----CCCC--------
T ss_pred             HHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhhc
Confidence            9998887554433221    2334455678899999999999977655544    445557766654
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 5e-16
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.9 bits (188), Expect = 5e-16
 Identities = 44/263 (16%), Positives = 102/263 (38%), Gaps = 7/263 (2%)

Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
            G   N   + +  +HK +R+  N  +L+LA+ DL ++  G   T        + +GP  
Sbjct: 50  LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG 109

Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
           C L      +   +++++L  L+ ERY  +  P+ +    +   I+     WV+A+  A 
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAA 169

Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILM 325
           P  +                    +   + +   ++ V+  F+ +++ PL VI   Y  +
Sbjct: 170 PPLVGWSRYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

Query: 326 ARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTG 385
              ++ +           ++  +A K+V +MV ++  + L   L           +  + 
Sbjct: 227 VFTVKEAAAQQQ----ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD 282

Query: 386 ICSVVVHLAVNYNMMSPWCHSIV 408
              + + +   +   S   + ++
Sbjct: 283 FGPIFMTIPAFFAKTSAVYNPVI 305

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 87.6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-36  Score=302.08  Aligned_cols=289  Identities=17%  Similarity=0.226  Sum_probs=232.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhh
Q psy17390        133 LLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEAT  212 (522)
Q Consensus       133 ~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l  212 (522)
                      +.++.+++.+++++|++||+++++++.++|++|++.|++++|||++|++.++...|..+.....+.|..+...|....++
T Consensus        37 ~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~  116 (348)
T d1u19a_          37 FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF  116 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhc
Confidence            45778888999999999999999999999999999999999999999999998899988888888899999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecC-CC
Q psy17390        213 RDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSP-FP  291 (522)
Q Consensus       213 ~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~-~~  291 (522)
                      ...+..+|++++++|++|||.+|++|++|+..++++....++++|.+++++..|+.+...........    ..|.. ..
T Consensus       117 ~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  192 (348)
T d1u19a_         117 ATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQ----CSCGIDYY  192 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTT----TEEECCCS
T ss_pred             cccceeeecchhhhhhcccceeeeccccccccccccccccceeeehhhhheecccccccceeccCCcc----cccccccc
Confidence            99999999999999999999999999999888888888999999999999999888876555433111    23332 22


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy17390        292 IEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSP  371 (522)
Q Consensus       292 ~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P  371 (522)
                      ..........+.++...+.+++|+++++++|.+|.+++|++.++.    .....+.++++|.+|++++++++|++| |+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~P  267 (348)
T d1u19a_         193 TPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ----QESATTQKAEKEVTRMVIIMVIAFLIC-WLP  267 (348)
T ss_dssp             CCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSS----CSSSHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc----chhhhhHHHHhhHhheEEEeehHHHHH-hhH
Confidence            333344566677777788889999999999999998887765432    233466678899999999999999999 999


Q ss_pred             HHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCcccc
Q psy17390        372 YTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTD  437 (522)
Q Consensus       372 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~~~  437 (522)
                      +.+..+.........   .......+..++.++||++||+||.+..    +.+|+++++.++|+.+
T Consensus       268 ~~i~~~~~~~~~~~~---~~~~~~~~~~~l~~~ns~iNPiIY~~~~----~~fR~~~~~~l~c~~~  326 (348)
T d1u19a_         268 YAGVAFYIFTHQGSD---FGPIFMTIPAFFAKTSAVYNPVIYIMMN----KQFRNCMVTTLCCGKN  326 (348)
T ss_dssp             HHHHHHHHHHTTTSC---CCHHHHHHHHHHGGGGGTHHHHHHHHTC----HHHHHHHHHHHTSSCC
T ss_pred             HHhhhheeeccCCcc---ccHHHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHhCCCCC
Confidence            998887654332222   1223446678889999999999775544    4555666777765543
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure