Psyllid ID: psy17420

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEcccccHccccccccccEEccccccccccccHHHHHHHHHHccEEccccHHHHcccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
yrdqagrdADVIYRRAQQLLHqlgqpssaiTEAQVKLFCRNASFIHVIRgtlwgdhgQAALESARICLInatglgtecgpvnfcpveGLLLSSIssgiadeydprtsnaRQISEALENGDGLLIYHVMLRGVDkfytehntypgeyddqvepDIVKLKSCISKLtaewgcgvlskddyLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Flexible Loop (DISEMBL)
yrdqagrdaDVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYpgeyddqvepDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Low Complexity Region (SEG)
YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEglllssissgiADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Disordered region (IsUnstruct)
**********VIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIA***************ALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIK**
Disordered Region (DISOPRED)
YRDQAGRDADVIYRRAQQLLH**********EAQVKLFCRNASFIHVIRGTLWGDHGQ**********INATGLGTECGPVNFCPVEGLLLSSISSGIADEYDP*************NGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Disordered Region (DISEMBL)
********ADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Disordered Region (DISPRO)
YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWG*H***A**SARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q7SXP2	533	NEDD8-activating enzyme E	yes	N/A	0.784	0.307	0.377	7e-37
Q5ZIE6	535	NEDD8-activating enzyme E	yes	N/A	0.784	0.306	0.358	7e-34
Q8VBW6	534	NEDD8-activating enzyme E	yes	N/A	0.784	0.307	0.354	4e-33
Q4R3L6	510	NEDD8-activating enzyme E	N/A	N/A	0.784	0.321	0.354	5e-33
Q9Z1A5	534	NEDD8-activating enzyme E	yes	N/A	0.784	0.307	0.354	7e-33
Q13564	534	NEDD8-activating enzyme E	yes	N/A	0.784	0.307	0.349	3e-32
Q6NTW6	533	NEDD8-activating enzyme E	N/A	N/A	0.784	0.307	0.334	1e-30
Q9VTE9	524	NEDD8-activating enzyme E	yes	N/A	0.770	0.307	0.373	6e-27
Q54JM3	520	NEDD8-activating enzyme E	yes	N/A	0.760	0.305	0.3	2e-21
P42744	540	NEDD8-activating enzyme E	yes	N/A	0.775	0.3	0.278	1e-20

>sp|Q7SXP2|ULA1_DANRE NEDD8-activating enzyme E1 regulatory subunit OS=Danio rerio GN=nae1 PE=2 SV=2

 Score =  153 bits (387), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YRD+A RDA V+ +  + LL  +G+   +I+E ++KLFC+NA+F+ V+R           
Sbjct: 345 YRDKAMRDAAVVSKHVEMLLQSVGKTPESISEQEIKLFCKNAAFLRVVR----------- 393

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             +ADEY   T N  +I+  +++ D
Sbjct: 394 -----------------------C-----------RSLADEYSVDTFNKDEITSCMDSPD 419

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+FY +H+ YPG Y+ QVE DI KLK C++ L  E+   V  KDDY+H
Sbjct: 420 SEMVLYLMLRSVDRFYQQHSRYPGVYNYQVEEDINKLKLCVNSLLQEYSLNVNVKDDYIH 479

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H V++FLGG AAQE IKI+
Sbjct: 480 EFCRYGAAEPHTVAAFLGGSAAQEAIKII 508

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.
Danio rerio (taxid: 7955)

>sp|Q5ZIE6|ULA1_CHICK NEDD8-activating enzyme E1 regulatory subunit OS=Gallus gallus GN=NAE1 PE=2 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A RD   +   A +LL  LG+   +I+E ++KL C N++F+ V+R           
Sbjct: 347 YREKAKRDIAAVGNHAAKLLQSLGKAPESISERELKLLCSNSAFLRVVR----------- 395

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             +++EY   T N  +I   ++N D
Sbjct: 396 -----------------------C-----------RSLSEEYGLNTFNKDEIISNMDNPD 421

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+FY +H  YPG Y+ QVE DI KLKSC++    E G  VL KDDY+H
Sbjct: 422 SEVVLYLMLRAVDRFYKQHGRYPGVYNYQVEDDIGKLKSCLTSFLQEHGLSVLVKDDYVH 481

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E HA+++F+GG AAQE+IK++
Sbjct: 482 EFCRYGAAEPHAIAAFMGGAAAQEIIKVI 510

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M.

Gallus gallus (taxid: 9031)

>sp|Q8VBW6|ULA1_MOUSE NEDD8-activating enzyme E1 regulatory subunit OS=Mus musculus GN=Nae1 PE=2 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 346 YREKAKKDAAAVGNHVAKLLQSVGQAPESISEKELKLLCSNSAFLRVVR----------- 394

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             +A+EY   T N  +I  +++N D
Sbjct: 395 -----------------------C-----------RSLAEEYGLDTVNKDEIISSMDNPD 420

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +H  YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 421 NEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 480

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 481 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Mus musculus (taxid: 10090)

>sp|Q4R3L6|ULA1_MACFA NEDD8-activating enzyme E1 regulatory subunit OS=Macaca fascicularis GN=NAE1 PE=2 SV=1

 Score =  140 bits (354), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 322 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 370

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             +A+EY   T N  +I  +++N D
Sbjct: 371 -----------------------C-----------RSLAEEYGLDTINKDEIISSMDNPD 396

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +H  YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 397 NEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 456

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 457 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 485

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Macaca fascicularis (taxid: 9541)

>sp|Q9Z1A5|ULA1_RAT NEDD8-activating enzyme E1 regulatory subunit OS=Rattus norvegicus GN=Nae1 PE=1 SV=1

 Score =  140 bits (352), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL   GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 346 YREKAKKDAAAVGNHVAKLLQSCGQAPESISEKELKLLCSNSAFLRVVR----------- 394

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                +A+EY   T N  +I  +++N D
Sbjct: 395 ----------------------------------CRSLAEEYGLHTVNKDEIISSMDNPD 420

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +H  YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 421 NEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 480

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H V++FLGG AAQEVIKI+
Sbjct: 481 EFCRYGAAEPHTVAAFLGGAAAQEVIKII 509

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Rattus norvegicus (taxid: 10116)

>sp|Q13564|ULA1_HUMAN NEDD8-activating enzyme E1 regulatory subunit OS=Homo sapiens GN=NAE1 PE=1 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 346 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 394

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             +A+EY   T N  +I  +++N D
Sbjct: 395 -----------------------C-----------RSLAEEYGLDTINKDEIISSMDNPD 420

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 421 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 480

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 481 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Necessary for cell cycle progression through the S-M checkpoint. Overexpression of NAE1 causes apoptosis through deregulation of NEDD8 conjugation.

Homo sapiens (taxid: 9606)

>sp|Q6NTW6|ULA1_XENLA NEDD8-activating enzyme E1 regulatory subunit OS=Xenopus laevis GN=nae1 PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 105/209 (50%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +G+P  +I+E  ++LFCRN +F+ V+R           
Sbjct: 345 YREKAKKDASAVESCVSKLLQSVGRPPESISERDIRLFCRNCAFLRVVR----------- 393

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                + +EY   T+    I   +EN D
Sbjct: 394 ----------------------------------CRSLEEEYGLDTAKKDDIVSLMENPD 419

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F  +   YPG Y+ Q+E DI KLKSC++ L  E+G  +  KD+Y+ 
Sbjct: 420 NEIVLYLMLRAVDRFQKQLGRYPGIYNYQIESDIGKLKSCLNGLLQEYGLSLTVKDEYIQ 479

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H ++SFLGG AAQE IKI+
Sbjct: 480 EFCRYGAAEPHTIASFLGGAAAQEAIKII 508

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Xenopus laevis (taxid: 8355)

>sp|Q9VTE9|ULA1_DROME NEDD8-activating enzyme E1 regulatory subunit OS=Drosophila melanogaster GN=APP-BP1 PE=1 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 105/209 (50%), Gaps = 48/209 (22%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR QA +DAD +Y + Q+ L QL  P+ +I E  V+L C+ A+ + VIRGT         
Sbjct: 339 YRQQALQDADQVYHKCQEYLKQLALPADSIDERSVRLICKEAAGLAVIRGT--------- 389

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                IA+EY+ ++S    + E  E   
Sbjct: 390 ------------------------------------RIAEEYE-KSSRLLPLVEDNELQG 412

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            L  Y+  LR  ++F +E    PGE    VE DI +LKS  +K+ ++ G      DD LH
Sbjct: 413 NLTAYNFALRAYERFLSECGNIPGEC--IVEQDIGRLKSIAAKMLSDLGMHATISDDVLH 470

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           EICRYGG ELHAVS+F+GGCAAQEVIKI+
Sbjct: 471 EICRYGGAELHAVSAFIGGCAAQEVIKII 499

Regulatory subunit of the dimeric Uba3-Ula1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-Uba3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of Ubc12 (By similarity). Appl and APP-BP1 interact antagonistically during development.

Drosophila melanogaster (taxid: 7227)

>sp|Q54JM3|ULA1_DICDI NEDD8-activating enzyme E1 regulatory subunit OS=Dictyostelium discoideum GN=nae1 PE=3 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 51/210 (24%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y+++A  D         Q+L ++G+  S+I+   VK FC+N  F+++IR           
Sbjct: 336 YQEKALADLSEFSGYVDQILTKVGK--SSISSDLVKKFCKNTRFLNIIR----------- 382

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                I++EY+   +N   I   LE  D
Sbjct: 383 ----------------------------------YRTISEEYNQPKTNL--IKSELEQAD 406

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGV-LSKDDYL 179
            +++++++LRG+DKFY  ++ YPG  DD  E DI  LK+ I++  AE      L KDDY+
Sbjct: 407 TVMVFYILLRGIDKFYKTYHKYPGSSDD-FESDIPLLKTVITQYLAEINISNDLVKDDYI 465

Query: 180 HEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
            E  R+GG ELH ++S +GG  +QE+IK++
Sbjct: 466 AEFVRFGGSELHNIASLMGGVTSQEIIKLI 495

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Dictyostelium discoideum (taxid: 44689)

>sp|P42744|ULA1_ARATH NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 50/212 (23%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  +A  D  VI  R + +L ++G+  S+I +  +K FC+NA  + + R  +        
Sbjct: 351 YLAKAEADFLVIEERVKNILKKIGRDPSSIPKPTIKSFCKNARKLKLCRYRM-------- 402

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                + DE+  R  +  +I + L + D
Sbjct: 403 -------------------------------------VEDEF--RNPSVTEIQKYLADED 423

Query: 121 --GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGC-GVLSKDD 177
             G + ++++LR  D+F   +N +PG++D  ++ DI +LK+    L  + GC G +  DD
Sbjct: 424 YSGAMGFYILLRAADRFAANYNKFPGQFDGGMDEDISRLKTTALSLLTDLGCNGSVLPDD 483

Query: 178 YLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
            +HE+CR+G  E+H VS+F+GG A+QEVIK++
Sbjct: 484 LIHEMCRFGASEIHVVSAFVGGIASQEVIKLV 515

Regulatory subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1. Plays an important role in auxin response.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
383857962	538	PREDICTED: NEDD8-activating enzyme E1 re	0.784	0.304	0.492	4e-52
307213330	538	NEDD8-activating enzyme E1 regulatory su	0.784	0.304	0.488	1e-51
322801597	538	hypothetical protein SINV_00190 [Solenop	0.784	0.304	0.478	3e-51
307168563	538	NEDD8-activating enzyme E1 regulatory su	0.784	0.304	0.483	3e-50
340729158	538	PREDICTED: NEDD8-activating enzyme E1 re	0.784	0.304	0.502	6e-50
380013861	538	PREDICTED: NEDD8-activating enzyme E1 re	0.784	0.304	0.497	6e-50
328791044	555	PREDICTED: LOW QUALITY PROTEIN: NEDD8-ac	0.784	0.295	0.492	9e-50
350401549	538	PREDICTED: NEDD8-activating enzyme E1 re	0.784	0.304	0.497	2e-49
332028510	506	NEDD8-activating enzyme E1 regulatory su	0.784	0.324	0.464	5e-49
156538611	538	PREDICTED: NEDD8-activating enzyme E1 re	0.784	0.304	0.468	1e-47

>gi|383857962|ref|XP_003704472.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Megachile rotundata]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 133/209 (63%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  D + ++RR  QLL QLG+PS +I+E  VKLFCR+AS IHV RGT         
Sbjct: 350 YYKQAAADVEAVWRRTLQLLQQLGKPSDSISERDVKLFCRHASNIHVERGT--------- 400

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                IADEYD +  +   I ++LEN +
Sbjct: 401 ------------------------------------RIADEYDSKIFDTSNIVQSLENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+V+LRG++KF TE+N+YPGE+DDQVEPDIVKLK+CI+KL +EWGCG L+KDDY+H
Sbjct: 425 SMMIYYVVLRGIEKFQTEYNSYPGEFDDQVEPDIVKLKACITKLLSEWGCGPLAKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG AAQEVIK +
Sbjct: 485 EFCRFGGSELHSVSAFLGGLAAQEVIKFV 513

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213330|gb|EFN88782.1| NEDD8-activating enzyme E1 regulatory subunit [Harpegnathos saltator]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  +A+ ++RR  QLL QLG+PS +I E  VK+FCR+A+ IHV RG          
Sbjct: 350 YHKQASAEAEAVWRRTLQLLRQLGRPSDSILEKDVKMFCRHATDIHVERG---------- 399

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                              S IADEYDP+  +   I + LEN +
Sbjct: 400 -----------------------------------SCIADEYDPKVFDTNTIVQNLENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+VMLRGVDKF  E+N+YPGE+DDQVEPDIVKLK+C++KL +EWGCG L+KDDY+H
Sbjct: 425 SMMIYYVMLRGVDKFQAEYNSYPGEFDDQVEPDIVKLKTCLTKLLSEWGCGPLAKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG AAQE IK +
Sbjct: 485 EFCRFGGAELHSVSAFLGGLAAQETIKFI 513

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801597|gb|EFZ22238.1| hypothetical protein SINV_00190 [Solenopsis invicta]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 132/209 (63%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  DA+ ++RR  QLL QLG+PS +I+E  VKLFCR+ + IHV +G          
Sbjct: 350 YHKQASADAEAVWRRTLQLLRQLGRPSDSISEKDVKLFCRHVANIHVEKG---------- 399

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                              S IADEYDP+  +   I + LEN +
Sbjct: 400 -----------------------------------SCIADEYDPKVFDTNIIVQNLENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            +++Y+VMLRGVDKF  E+N+YPGE+DDQVEPDIVKLK+C++KL +EWGCG L+KDDY+H
Sbjct: 425 SMMLYYVMLRGVDKFQAEYNSYPGEFDDQVEPDIVKLKTCLTKLLSEWGCGPLAKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E+CR+GG ELH+VS+FLGG AA E IK++
Sbjct: 485 ELCRFGGAELHSVSAFLGGLAAHETIKLI 513

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168563|gb|EFN61621.1| NEDD8-activating enzyme E1 regulatory subunit [Camponotus floridanus]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 130/209 (62%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  DA+ ++RR  QLL QLG+PS +I E  VKLFCR+AS IHV +G          
Sbjct: 350 YYKQASADAEAVWRRTLQLLRQLGRPSDSILEKDVKLFCRHASNIHVEKG---------- 399

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                              S IADEYD +  +   I + LE  +
Sbjct: 400 -----------------------------------SCIADEYDSKVFDTNIIVQNLETPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+VMLRG+DKF  E+N+YPGE+DDQVEPDIVKLK+C++KL +EWGCG L+KDDY+H
Sbjct: 425 SMMIYYVMLRGMDKFQAEYNSYPGEFDDQVEPDIVKLKTCLTKLLSEWGCGPLAKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG AAQE IK++
Sbjct: 485 EFCRFGGAELHSVSAFLGGLAAQETIKLI 513

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729158|ref|XP_003402875.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Bombus terrestris]

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+A  IHV RGT         
Sbjct: 350 YHKQAIVDAEAVWRRTLQLLRQLGKSSDSISERDVKLFCRHALNIHVQRGT--------- 400

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             IADEYD +  +A  I + LEN +
Sbjct: 401 -----------------------C-------------IADEYDSKIFDASNIVQCLENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+V+LRGV+KF TE+N+YPGE+DDQVEPDIVKLK+CI+KL  EWGCG L KDDY+H
Sbjct: 425 SMMIYYVVLRGVEKFQTEYNSYPGEFDDQVEPDIVKLKACITKLLNEWGCGPLVKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG AAQEVIK +
Sbjct: 485 EFCRFGGAELHSVSAFLGGLAAQEVIKFV 513

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013861|ref|XP_003690964.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Apis florea]

 Score =  202 bits (514), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 132/209 (63%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+AS IHV +GT         
Sbjct: 350 YYKQAIADAESVWRRTLQLLRQLGKSSDSISERDVKLFCRHASNIHVEKGT--------- 400

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             IADEYD +T +   I ++LEN +
Sbjct: 401 -----------------------C-------------IADEYDSKTFDTSDIVQSLENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+V+LRGV+KF  E+N+YPGE+DDQVEPDIVKLK+CI+KL  EWGCG L KDDY+H
Sbjct: 425 SMMIYYVVLRGVEKFQAEYNSYPGEFDDQVEPDIVKLKACITKLLNEWGCGPLVKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG AAQEVIK +
Sbjct: 485 EFCRFGGAELHSVSAFLGGLAAQEVIKFV 513

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791044|ref|XP_003251507.1| PREDICTED: LOW QUALITY PROTEIN: NEDD8-activating enzyme E1 regulatory subunit [Apis mellifera]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 131/209 (62%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+AS IHV +GT         
Sbjct: 367 YYKQAIADAESVWRRTLQLLRQLGKSSDSISEKDVKLFCRHASNIHVEKGT--------- 417

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             IADEYD +T +   I ++LEN +
Sbjct: 418 -----------------------C-------------IADEYDSKTFDTNDIVQSLENPE 441

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+V+LRGV+KF  E+N+YPGE+DDQVEPDIVKLK+CI+KL  EWGCG L KDDY+H
Sbjct: 442 SMMIYYVVLRGVEKFQAEYNSYPGEFDDQVEPDIVKLKACITKLLNEWGCGPLVKDDYVH 501

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG  AQEVIK +
Sbjct: 502 EFCRFGGAELHSVSAFLGGLTAQEVIKFV 530

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401549|ref|XP_003486188.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Bombus impatiens]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  DA+ ++RR  QLL QLG+ S +I+E  VKLFCR+A  IHV RGT         
Sbjct: 350 YHKQAIVDAEAVWRRTLQLLRQLGKSSDSISERDVKLFCRHALNIHVQRGT--------- 400

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             IA+EYD +  +A  I + LEN +
Sbjct: 401 -----------------------C-------------IANEYDSKIFDASNIVQCLENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+V+LRGV+KF TE+N+YPGE+DDQVEPDIVKLK+CI+KL  EWGCG L KDDY+H
Sbjct: 425 SMMIYYVVLRGVEKFQTEYNSYPGEFDDQVEPDIVKLKACITKLLNEWGCGPLVKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CR+GG ELH+VS+FLGG AAQEVIK +
Sbjct: 485 EFCRFGGAELHSVSAFLGGLAAQEVIKFV 513

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028510|gb|EGI68549.1| NEDD8-activating enzyme E1 regulatory subunit [Acromyrmex echinatior]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 128/209 (61%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  D + ++RR  QLL QLG+ S +I E  VKLFCR+ + IHV +G          
Sbjct: 318 YHKQAAADVEAVWRRTLQLLRQLGRSSDSILEKDVKLFCRHVTNIHVEKG---------- 367

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                              S IADEYDP+  +   I + LEN +
Sbjct: 368 -----------------------------------SCIADEYDPKVFDTNVIVQNLENPE 392

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            ++IY+VMLRGVDKF  E+N+YPGE+DDQVEPDIVKLK+C++KL +EWGCG L+KDDY+H
Sbjct: 393 SMMIYYVMLRGVDKFQAEYNSYPGEFDDQVEPDIVKLKTCLTKLLSEWGCGPLAKDDYVH 452

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E+CR+GG ELH+VS++LG  AA E IK++
Sbjct: 453 ELCRFGGAELHSVSAYLGALAAHETIKLI 481

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538611|ref|XP_001607571.1| PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Nasonia vitripennis]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 126/209 (60%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           Y  QA  D + ++RR   LL QLG+PS +I E  VKLFCR+AS + V RGT         
Sbjct: 350 YHKQAVADVEAVWRRTLMLLRQLGKPSDSIPEKDVKLFCRHASELCVQRGT--------- 400

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                  C             IADEYDP+  N  +I++ LEN +
Sbjct: 401 -----------------------C-------------IADEYDPKLINTNKIAQELENPE 424

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
            L++Y+V+LRGV+KF  E+N YPGE+DD VEPDIVKLK+CISKL  EWGCG L KDDY+H
Sbjct: 425 SLMVYYVVLRGVEKFQAEYNAYPGEFDDHVEPDIVKLKACISKLLGEWGCGPLVKDDYVH 484

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E+CR+GG ELH++S+ LGG  AQE +K +
Sbjct: 485 EVCRFGGAELHSISATLGGLVAQETVKFI 513

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
ZFIN|ZDB-GENE-040426-1552	533	nae1 "nedd8 activating enzyme	0.531	0.208	0.504	1.1e-37
UNIPROTKB|H9L1Q5	517	H9L1Q5 "Uncharacterized protei	0.531	0.214	0.495	1e-36
UNIPROTKB|Q5ZIE6	535	NAE1 "NEDD8-activating enzyme	0.531	0.207	0.495	1.4e-36
UNIPROTKB|F1P442	535	NAE1 "NEDD8-activating enzyme	0.531	0.207	0.495	1.4e-36
UNIPROTKB|E1B8X4	534	NAE1 "Uncharacterized protein"	0.531	0.207	0.495	3.4e-36
RGD|619945	534	Nae1 "NEDD8 activating enzyme	0.531	0.207	0.504	3.4e-36
UNIPROTKB|Q9Z1A5	534	Nae1 "NEDD8-activating enzyme	0.531	0.207	0.504	3.4e-36
UNIPROTKB|E2RE24	534	NAE1 "Uncharacterized protein"	0.531	0.207	0.495	4.4e-36
MGI|MGI:2384561	534	Nae1 "NEDD8 activating enzyme	0.531	0.207	0.495	7.5e-36
UNIPROTKB|Q13564	534	NAE1 "NEDD8-activating enzyme	0.531	0.207	0.486	6e-35

ZFIN|ZDB-GENE-040426-1552 nae1 "nedd8 activating enzyme E1 subunit 1" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
 Identities = 56/111 (50%), Positives = 76/111 (68%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             ADEY   T N  +I+  +++ D  ++ ++MLR VD+FY +H+ YPG Y+ QVE DI KLK
Sbjct:   398 ADEYSVDTFNKDEITSCMDSPDSEMVLYLMLRSVDRFYQQHSRYPGVYNYQVEEDINKLK 457

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
              C++ L  E+   V  KDDY+HE CRYG  E H V++FLGG AAQE IKI+
Sbjct:   458 LCVNSLLQEYSLNVNVKDDYIHEFCRYGAAEPHTVAAFLGGSAAQEAIKII 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|H9L1Q5 H9L1Q5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             ++EY   T N  +I   ++N D  ++ ++MLR VD+FY +H  YPG Y+ QVE DI KLK
Sbjct:   382 SEEYGLNTFNKDEIISNMDNPDSEVVLYLMLRAVDRFYKQHGRYPGVYNYQVEDDIGKLK 441

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E G  VL KDDY+HE CRYG  E HA+++F+GG AAQE+IK++
Sbjct:   442 SCLTSFLQEHGLSVLVKDDYVHEFCRYGAAEPHAIAAFMGGAAAQEIIKVI 492

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q5ZIE6 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             ++EY   T N  +I   ++N D  ++ ++MLR VD+FY +H  YPG Y+ QVE DI KLK
Sbjct:   400 SEEYGLNTFNKDEIISNMDNPDSEVVLYLMLRAVDRFYKQHGRYPGVYNYQVEDDIGKLK 459

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E G  VL KDDY+HE CRYG  E HA+++F+GG AAQE+IK++
Sbjct:   460 SCLTSFLQEHGLSVLVKDDYVHEFCRYGAAEPHAIAAFMGGAAAQEIIKVI 510

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

UNIPROTKB|F1P442 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             ++EY   T N  +I   ++N D  ++ ++MLR VD+FY +H  YPG Y+ QVE DI KLK
Sbjct:   400 SEEYGLNTFNKDEIISNMDNPDSEVVLYLMLRAVDRFYKQHGRYPGVYNYQVEDDIGKLK 459

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E G  VL KDDY+HE CRYG  E HA+++F+GG AAQE+IK++
Sbjct:   460 SCLTSFLQEHGLSVLVKDDYVHEFCRYGAAEPHAIAAFMGGAAAQEIIKVI 510

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1B8X4 NAE1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             A+EY   T N  +I  +++N D  ++ ++MLR VD+F+ +H  YPG  + QVE DI KLK
Sbjct:   399 AEEYSLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLK 458

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E+G  V+ KDDY+HE CRYG  E H +++FLGG AAQEVIKI+
Sbjct:   459 SCLTSFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|619945 Nae1 "NEDD8 activating enzyme E1 subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 301 (111.0 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
 Identities = 56/111 (50%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             A+EY   T N  +I  +++N D  ++ ++MLR VD+F+ +H  YPG  + QVE DI KLK
Sbjct:   399 AEEYGLHTVNKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLK 458

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E+G  V+ KDDY+HE CRYG  E H V++FLGG AAQEVIKI+
Sbjct:   459 SCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTVAAFLGGAAAQEVIKII 509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033314 "mitotic DNA replication checkpoint" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0019781 "NEDD8 activating enzyme activity" evidence=ISO

UNIPROTKB|Q9Z1A5 Nae1 "NEDD8-activating enzyme E1 regulatory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 301 (111.0 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
 Identities = 56/111 (50%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             A+EY   T N  +I  +++N D  ++ ++MLR VD+F+ +H  YPG  + QVE DI KLK
Sbjct:   399 AEEYGLHTVNKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLK 458

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E+G  V+ KDDY+HE CRYG  E H V++FLGG AAQEVIKI+
Sbjct:   459 SCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTVAAFLGGAAAQEVIKII 509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E2RE24 NAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 300 (110.7 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             A+EY   T N  +I  +++N D  ++ ++MLR VD+F+ +H  YPG  + QVE DI KLK
Sbjct:   399 AEEYGLNTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLK 458

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E+G  V+ KDDY+HE CRYG  E H +++FLGG AAQEVIKI+
Sbjct:   459 SCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:2384561 Nae1 "NEDD8 activating enzyme E1 subunit 1" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
 Identities = 55/111 (49%), Positives = 77/111 (69%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             A+EY   T N  +I  +++N D  ++ ++MLR VD+F+ +H  YPG  + QVE DI KLK
Sbjct:   399 AEEYGLDTVNKDEIISSMDNPDNEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLK 458

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E+G  V+ KDDY+HE CRYG  E H +++FLGG AAQEVIKI+
Sbjct:   459 SCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0033314 "mitotic DNA replication checkpoint" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0045116 "protein neddylation" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|Q13564 NAE1 "NEDD8-activating enzyme E1 regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 290 (107.1 bits), Expect = 6.0e-35, Sum P(2) = 6.0e-35
 Identities = 54/111 (48%), Positives = 76/111 (68%)

Query:    99 ADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLK 158
             A+EY   T N  +I  +++N D  ++ ++MLR VD+F+ +   YPG  + QVE DI KLK
Sbjct:   399 AEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLK 458

Query:   159 SCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
             SC++    E+G  V+ KDDY+HE CRYG  E H +++FLGG AAQEVIKI+
Sbjct:   459 SCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0033314 "mitotic DNA replication checkpoint" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA

GO:0006260 "DNA replication" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	7e-13
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	4e-10
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	2e-08
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	3e-07
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	4e-06

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 20/51 (39%), Positives = 37/51 (72%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGT 51
           YR++A +DA  + +  +++L  LG+   +I++ ++KLFC+NA+F+ VIRG 
Sbjct: 330 YREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGR 380

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 20/26 (76%), Positives = 23/26 (88%)

Query: 52 LWGDHGQAALESARICLINATGLGTE 77
          LWG+HGQAALESA +CL+NAT  GTE
Sbjct: 9  LWGEHGQAALESAHVCLLNATATGTE 34

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 42/184 (22%)

Query: 52  LWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQ 111
           LWGD  Q  L SA++ +I A  LG E         + L+L+ I S      D R  +   
Sbjct: 8   LWGDEAQNKLRSAKVLIIGAGALGAEI-------AKNLVLAGIDS--ITIVDHRLVSTED 58

Query: 112 IS----------EALENGDGLLIYHVMLRGVDKFYT-EHNTYPGEYDDQVEPDIVKLKSC 160
           +            +  N          L+ ++              +D    + ++  + 
Sbjct: 59  LGSNFFLDAEVSNSGMNRAAASYEF--LQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTL 116

Query: 161 ISKLTAEWGCGVLSKDDYLHEICR-----------YG-GGELH---AVSSFLGGCAAQEV 205
           +             +   ++++CR           YG  G       +++FLGG  AQE 
Sbjct: 117 VIAT-----EENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDFPIAAFLGGVVAQEA 171

Query: 206 IKIL 209
           IK +
Sbjct: 172 IKSI 175

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 39/147 (26%)

Query: 93  SISSGIADEY-DPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHN---TYPGE--- 145
            I S + + + D R  N    S           + +M R + +F  E N     PG    
Sbjct: 265 KIPSSVEEIFNDDRCENLTSQSS---------SFWIMARALKEFVAEENGLLPLPGTLPD 315

Query: 146 --------------YDDQVEPDIVKLKSCISKLTAEWGCGVLS-KDDYLHEICR------ 184
                         Y ++ E D  +++  + ++    G    S  D  +   C+      
Sbjct: 316 MTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLR 375

Query: 185 --YGGGELHAVSSFLGGCAAQEVIKIL 209
              G    H +S+F+GG AAQEVIK++
Sbjct: 376 VIRGRSLEHNISAFMGGIAAQEVIKLI 402

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 104 PRTSNARQISEALENGDGL----------LIYHVMLRGVDKFYTEHNTYPGEYDDQVEPD 153
           P+T   + + E L++   L             H   + +D+F  +++  P     Q   +
Sbjct: 252 PKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEE 311

Query: 154 IVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIK 207
           ++KL + IS+   E    V      +H +     G L  +++ +GG  +QEV+K
Sbjct: 312 LLKLATSISETLEEKVPDV--DAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLK 363

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG2016|consensus	523		100.0
KOG2012|consensus	1013		99.82
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.76
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.68
KOG2014|consensus	331		99.64
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	97.29
KOG2016|consensus	523		96.33
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	94.2
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	90.58
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	89.66
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	86.27

>KOG2016|consensus

Probab=100.00  E-value=8.1e-36  Score=271.27  Aligned_cols=161  Identities=42%  Similarity=0.698  Sum_probs=146.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCC
Q psy17420          1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGP   80 (209)
Q Consensus         1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
                      |++||..|+.+|.++|+++|+++|+++++|+++.|++|||||++|+|+||+                             
T Consensus       337 Y~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~-----------------------------  387 (523)
T KOG2016|consen  337 YHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGR-----------------------------  387 (523)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecc-----------------------------
Confidence            899999999999999999999999999999999999999999999999999                             


Q ss_pred             CCccCcccccccccCCCCccccCCCCCChhhHHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHH
Q psy17420         81 VNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSC  160 (209)
Q Consensus        81 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~f~sL~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i  160 (209)
                                      .+++||.| .+.-.....+.+++...+.+|++|||+++|..++|++||  +..+++|+..++++
T Consensus       388 ----------------~~~eey~~-s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG--~~~v~~D~~~lks~  448 (523)
T KOG2016|consen  388 ----------------TLAEEYEK-SITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG--EGPVEIDITKLKSI  448 (523)
T ss_pred             ----------------hhhhhhcc-cchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC--CCccchhhHHHHHH
Confidence                            78899984 233233333455667789999999999999999999999  46678999999999


Q ss_pred             HHHHHHhhCCCC-CChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        161 ISKLTAEWGCGV-LSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       161 ~~~i~~~~~~~~-~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      +..++.++|.++ .+.+++++||||++++|+|.|+||+||+|||||||+|
T Consensus       449 a~~~lse~g~~~~~v~d~~i~E~cR~gaaElH~VsAfiGGiaaQEvIKLi  498 (523)
T KOG2016|consen  449 AASLLSELGLDGNAVTDDAIHEICRFGAAELHVVSAFIGGIAAQEVIKLI  498 (523)
T ss_pred             HHHHHHHhccCcccCcHHHHHHHHhcCCchhHHHHHHHhhHHHHHHHHHH
Confidence            999999999986 5999999999999999999999999999999999985

>KOG2012|consensus

Probab=99.82  E-value=2.8e-20  Score=179.70  Aligned_cols=134  Identities=20%  Similarity=0.309  Sum_probs=117.8

Q ss_pred             HHHhhhcCCCCCcCCCCCccCcccccccccCCCC-ccccCCCCCChhhHHHHHhCCCc----------hHHHHHHHHHHH
Q psy17420         65 RICLINATGLGTECGPVNFCPVEGLLLSSISSGI-ADEYDPRTSNARQISEALENGDG----------LLIYHVMLRGVD  133 (209)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~p~~~~f~sL~~~l~~p~s----------~~~~y~~l~Al~  133 (209)
                      .|-|++||+|+|.= ++.|.++.-     .  |+ .+...|++++|++|+++|.+|+.          ++.+|++|+||+
T Consensus       231 kI~v~~p~sf~Igd-t~~f~~y~~-----G--Gi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~  302 (1013)
T KOG2012|consen  231 KITVLGPYSFSIGD-TTEFGEYKK-----G--GIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALH  302 (1013)
T ss_pred             EEEEecCceEEecc-ccchhhhhc-----C--ceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHH
Confidence            36677888888866 777777652     0  33 34566999999999999999963          888999999999


Q ss_pred             HHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        134 KFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       134 ~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      +|.++|||.|.+++   ++|+++|.+++.++....+...+++++++++++..+.|.|.||+|++||+|||||+|++
T Consensus       303 ~F~~~~Gr~P~p~~---e~DA~~l~~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~  375 (1013)
T KOG2012|consen  303 QFQEAHGRLPRPGN---EEDAEELVELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKAC  375 (1013)
T ss_pred             HHHHHhCCCCCCCC---hhhHHHHHHHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhh
Confidence            99999999999999   99999999999999998886677999999999999999999999999999999999975

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.76  E-value=7.8e-19  Score=162.57  Aligned_cols=51  Identities=39%  Similarity=0.848  Sum_probs=50.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecc
Q psy17420          1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGT   51 (209)
Q Consensus         1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~   51 (209)
                      ||+||++|+++|+++|+++++++|++.+.||+++|+.||||+++|++++|+
T Consensus       330 Y~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~  380 (425)
T cd01493         330 YREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGR  380 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCC
Confidence            899999999999999999999999999999999999999999999999999

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.68  E-value=1.2e-16  Score=160.82  Aligned_cols=134  Identities=19%  Similarity=0.256  Sum_probs=112.3

Q ss_pred             HHHhhhcCCCCCcCCCCCccCcccccccccCCCCc-cccCCCCCChhhHHHHHhCCC----------chHHHHHHHHHHH
Q psy17420         65 RICLINATGLGTECGPVNFCPVEGLLLSSISSGIA-DEYDPRTSNARQISEALENGD----------GLLIYHVMLRGVD  133 (209)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~p~~~~f~sL~~~l~~p~----------s~~~~y~~l~Al~  133 (209)
                      .|.+++|+.|.+. -++.|.++..     .  |+. +...|.+..|++|++++.+|+          .+.++|++|+||+
T Consensus       220 ~i~~~~~~~f~i~-dt~~~~~y~~-----g--G~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~  291 (1008)
T TIGR01408       220 KITVISPYSFSIG-DTTELGPYLH-----G--GIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALD  291 (1008)
T ss_pred             eEEecCCceEEec-cccccchhhc-----C--ceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHH
Confidence            4667778888775 5556777541     0  222 344577889999999999983          2567999999999


Q ss_pred             HHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCCC-ChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        134 KFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVL-SKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       134 ~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~~-i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      +|.++|||+|.+++   ++|++++.++++++.++.+...+ +++++++.+++++.++++|+||++||++||||||++
T Consensus       292 ~f~~~~g~~P~~~~---~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKai  365 (1008)
T TIGR01408       292 QFQEKYSRKPNVGC---QQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAV  365 (1008)
T ss_pred             HHHHHcCCCCCCCC---HHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHh
Confidence            99999999999988   99999999999999998776544 999999999999999999999999999999999975

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2014|consensus

Probab=99.64  E-value=5.1e-16  Score=136.68  Aligned_cols=143  Identities=26%  Similarity=0.283  Sum_probs=110.1

Q ss_pred             HHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCCCCccCcccccccccCCC----------Ccc----c
Q psy17420         36 KLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISSG----------IAD----E  101 (209)
Q Consensus        36 ~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~----------~~~----~  101 (209)
                      ..-|++.+ ++.+-|..||++|                       -.|++|+.|.+--.-.+          ..+    +
T Consensus       138 n~icrk~~-i~F~a~d~~g~~G-----------------------y~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~  193 (331)
T KOG2014|consen  138 NEICRKLN-IAFYAGDCFGLCG-----------------------YAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETE  193 (331)
T ss_pred             HHHHHhcC-ceEEeccccceee-----------------------eeeeehhhhhhhhhcccccccccccceeeeeccce
Confidence            44566555 7777888899987                       56889988877422000          001    1


Q ss_pred             cCCCCCChhhHHHHHhCCCc---------hHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHHhhCCCC
Q psy17420        102 YDPRTSNARQISEALENGDG---------LLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGV  172 (209)
Q Consensus       102 ~~p~~~~f~sL~~~l~~p~s---------~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~~  172 (209)
                      +-.....|.++.++++.++.         ..+.|++|+++..|.+.+||.||.   ..++|.+.+..|.++++...+   
T Consensus       194 ~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~---~~~~d~erl~~I~~ell~s~~---  267 (331)
T KOG2014|consen  194 WVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGE---TSEEDLERLLQIRNELLESET---  267 (331)
T ss_pred             ehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHHHHHhcCCCCcc---ccHHHHHHHHHHHHhhccccc---
Confidence            22334678899999888763         456899999999999999999993   348999999999999987322   


Q ss_pred             CChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        173 LSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       173 ~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      -++++++ +|..+.+.|++|+||++|||+||||||+|
T Consensus       268 i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~i  303 (331)
T KOG2014|consen  268 IIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAI  303 (331)
T ss_pred             cCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHh
Confidence            2566777 99999999999999999999999999986

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=97.29  E-value=0.00012  Score=65.07  Aligned_cols=20  Identities=50%  Similarity=0.780  Sum_probs=19.3

Q ss_pred             cchHHHHHHHHHHHHHHhhC
Q psy17420        190 LHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       190 L~pvaAiiGGiaAQEvIK~i  209 (209)
                      ++|+||++||++||||||++
T Consensus       244 ~~~~~~~~g~~~~q~~~~~~  263 (286)
T cd01491         244 LSPMAAFFGGLAAQEVLKAC  263 (286)
T ss_pred             cccHHHHhhhHHHHHHHHHc
Confidence            99999999999999999985

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>KOG2016|consensus

Probab=96.33  E-value=0.0004  Score=64.86  Aligned_cols=27  Identities=70%  Similarity=1.208  Sum_probs=24.5

Q ss_pred             ccCCCcchhhHHHHHHHhhhcCCCCCc
Q psy17420         51 TLWGDHGQAALESARICLINATGLGTE   77 (209)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (209)
                      |.||.|||+|||+|++||+|.+.+|+|
T Consensus        15 Rlwge~gQ~~le~a~vCll~~~~~g~e   41 (523)
T KOG2016|consen   15 RLWGEEGQAALESASVCLLNATPLGSE   41 (523)
T ss_pred             HHHHHHhHhhhhhceEEEecCChhHHH
Confidence            469999999999999999999988765

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=94.20  E-value=0.19  Score=47.13  Aligned_cols=87  Identities=26%  Similarity=0.452  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHH-hCCCCCCC------CC-------------CChhhHHHHHHHHHHHHHhhCCCC-CChHHHHHH
Q psy17420        123 LIYHVMLRGVDKFYTE-HNTYPGEY------DD-------------QVEPDIVKLKSCISKLTAEWGCGV-LSKDDYLHE  181 (209)
Q Consensus       123 ~~~y~~l~Al~~F~~~-~gr~Pg~~------~~-------------~~~~D~~~l~~i~~~i~~~~~~~~-~i~e~~i~e  181 (209)
                      ...+++.+||.+|.++ +|.+|-+.      .+             ....|..++.+++.++++..|.+. .++++.++.
T Consensus       287 ~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~  366 (425)
T cd01493         287 SSFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKL  366 (425)
T ss_pred             chHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence            4588999999999988 88776432      11             246899999999999999988764 499999999


Q ss_pred             HHHhc--------CCCcchHHHHHHHHHHHHHHhhC
Q psy17420        182 ICRYG--------GGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       182 ~~r~~--------~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      ||+.+        ..--||+||+|||+|||||||+|
T Consensus       367 FCkna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~  402 (425)
T cd01493         367 FCKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLI  402 (425)
T ss_pred             HHhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHH
Confidence            99865        22239999999999999999985

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=90.58  E-value=0.17  Score=36.68  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=18.8

Q ss_pred             CCcchHHHHHHHHHHHHHHhhC
Q psy17420        188 GELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       188 ~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      |-|.|+.+++|.+.|+|+||+|
T Consensus        24 GVlg~~~giigslqA~eaik~l   45 (84)
T PF05237_consen   24 GVLGPVVGIIGSLQANEAIKLL   45 (84)
T ss_dssp             -B-HHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHH
Confidence            5699999999999999999975

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=89.66  E-value=1.5  Score=30.54  Aligned_cols=58  Identities=12%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        151 EPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       151 ~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      +.+.+-+.+.++--...+|++ ..+...+++++..---.+.|..|++.|++..|++|++
T Consensus         7 ~~h~~fI~a~anLrA~~f~I~-~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~   64 (67)
T PF02134_consen    7 PLHLDFIYAAANLRAQNFGIP-PLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLL   64 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHTT----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-cccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHH
Confidence            555666666666666667777 4777778888844445788899999999999999974

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=86.27  E-value=0.49  Score=39.56  Aligned_cols=26  Identities=54%  Similarity=0.810  Sum_probs=23.6

Q ss_pred             CCCcchhhHHHHHHHhhhcCCCCCcC
Q psy17420         53 WGDHGQAALESARICLINATGLGTEC   78 (209)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
                      ||.+||..|..++++++..-|+|.++
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~ev   36 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEI   36 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHH
Confidence            99999999999999999998888764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		6e-33
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		6e-33
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		6e-33
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		6e-33
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		6e-33

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 45/209 (21%)
Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 349 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 397
Query: 61  LESARICLINATGLGTECGPVNFCPVEXXXXXXXXXXXADEYDPRTSNARQISEALENGD 120
                            C  +                 A+EY   T N  +I  +++N D
Sbjct: 398 -----------------CRSL-----------------AEEYGLDTINKDEIISSMDNPD 423
Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 424 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 483
Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 484 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 512

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 45/209 (21%)
Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 346 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 394
Query: 61  LESARICLINATGLGTECGPVNFCPVEXXXXXXXXXXXADEYDPRTSNARQISEALENGD 120
                            C  +                 A+EY   T N  +I  +++N D
Sbjct: 395 -----------------CRSL-----------------AEEYGLDTINKDEIISSMDNPD 420
Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 421 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 480
Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 481 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 509

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 45/209 (21%)
Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 343 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 391
Query: 61  LESARICLINATGLGTECGPVNFCPVEXXXXXXXXXXXADEYDPRTSNARQISEALENGD 120
                            C  +                 A+EY   T N  +I  +++N D
Sbjct: 392 -----------------CRSL-----------------AEEYGLDTINKDEIISSMDNPD 417
Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 418 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 477
Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 478 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 506

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 45/209 (21%)
Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 341 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 389
Query: 61  LESARICLINATGLGTECGPVNFCPVEXXXXXXXXXXXADEYDPRTSNARQISEALENGD 120
                            C  +                 A+EY   T N  +I  +++N D
Sbjct: 390 -----------------CRSL-----------------AEEYGLDTINKDEIISSMDNPD 415
Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 416 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 475
Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 476 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 504

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score =  136 bits (343), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 110/209 (52%), Gaps = 45/209 (21%)
Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 348 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVR----------- 396
Query: 61  LESARICLINATGLGTECGPVNFCPVEXXXXXXXXXXXADEYDPRTSNARQISEALENGD 120
                            C  +                 A+EY   T N  +I  +++N D
Sbjct: 397 -----------------CRSL-----------------AEEYGLDTINKDEIISSMDNPD 422
Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 423 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 482
Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 483 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 511

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	6e-38
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	5e-08
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	6e-14
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	6e-08
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-05

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  136 bits (343), Expect = 6e-38
 Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 343 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRC---------- 392

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                +A+EY   T N  +I  +++N D
Sbjct: 393 -----------------------------------RSLAEEYGLDTINKDEIISSMDNPD 417

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 418 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 477

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 478 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 506

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score = 51.2 bits (122), Expect = 5e-08
 Identities = 21/27 (77%), Positives = 22/27 (81%)

Query: 52 LWGDHGQAALESARICLINATGLGTEC 78
          LWGDHGQ ALESA +CLINAT  GTE 
Sbjct: 21 LWGDHGQEALESAHVCLINATATGTEI 47

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 68.3 bits (167), Expect = 6e-14
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 125 YHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICR 184
            + +L+ + KF T+    P    D  E D   L    + +    G   +S D    +  R
Sbjct: 239 DYFLLQVLLKFRTDKGRDPSS--DTYEEDSELLLQIRNDVLDSLG---ISPDLLPEDFVR 293

Query: 185 YGGGELHAVSSFLGGCAAQEVIKIL 209
           Y   E+  V + +GG  AQE++K L
Sbjct: 294 YCFSEMAPVCAVVGGILAQEIVKAL 318

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 25 QPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTE 77
          +    I+E +   + R       IR  LWG   Q  L ++R+ L+   GLG E
Sbjct: 6  EAGGGISEEEAAQYDRQ------IR--LWGLEAQKRLRASRVLLVGLKGLGAE 50

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 104 PRTSNARQISEALENGDGLL----------IYHVMLRGVDKFYTEHN-TYPGEYDDQVEP 152
           PR  + + + + L N + +             H+  + + +F   HN   P   +D+   
Sbjct: 252 PRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDAN 311

Query: 153 DIVKL-KSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           +++KL      +     G GV   +D + E+     G++  V +F GG  AQEV+K  
Sbjct: 312 ELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKAC 369

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.79
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	99.66
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.57
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	96.04
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	81.15

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=4.3e-35  Score=275.83  Aligned_cols=164  Identities=44%  Similarity=0.800  Sum_probs=148.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCC
Q psy17420          1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGP   80 (209)
Q Consensus         1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
                      ||+||++|+++|.++|+++++++|++++.|++++|+.||||+++|++++|+                             
T Consensus       343 y~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~~-----------------------------  393 (531)
T 1tt5_A          343 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCR-----------------------------  393 (531)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHhchhhhhccccc-----------------------------
Confidence            799999999999999999999999988999999999999999999999999                             


Q ss_pred             CCccCcccccccccCCCCccccCCCCCChhhHHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHH
Q psy17420         81 VNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSC  160 (209)
Q Consensus        81 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~f~sL~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i  160 (209)
                                      ++.+++++.+..-+.+...+..|+++.++|++|||+++|.++|||+|++++++.++|+++|.++
T Consensus       394 ----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~f~~~~gr~P~~~~~~~~~D~~~l~~~  457 (531)
T 1tt5_A          394 ----------------SLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSC  457 (531)
T ss_dssp             ----------------CHHHHHSTTTSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHH
T ss_pred             ----------------chHhhhccccchhhhhhhhhhccccchHHHHHHHHHHHHHHHhCCCCCccccchHHHHHHHHHH
Confidence                            4556666433322446666777888999999999999999999999999877778999999999


Q ss_pred             HHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        161 ISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       161 ~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      +.+++.+.+++..+++++++|++|++++||||||||+||+|||||||+|
T Consensus       458 ~~~~~~~~~~~~~~~~~~~~e~~r~~~~el~pvaA~~GGi~AQEviK~i  506 (531)
T 1tt5_A          458 LTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII  506 (531)
T ss_dssp             HHHHHHHHTCCCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcccccHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHH
Confidence            9999999887766899999999999999999999999999999999975

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.2e-19  Score=181.28  Aligned_cols=132  Identities=20%  Similarity=0.306  Sum_probs=104.9

Q ss_pred             HhhhcCCCCCcCCCCCccCcccccccccCCCC-ccccCCCCCChhhHHHHHhCCCc----------hHHHHHHHHHHHHH
Q psy17420         67 CLINATGLGTECGPVNFCPVEGLLLSSISSGI-ADEYDPRTSNARQISEALENGDG----------LLIYHVMLRGVDKF  135 (209)
Q Consensus        67 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~p~~~~f~sL~~~l~~p~s----------~~~~y~~l~Al~~F  135 (209)
                      .+++|++|.+ +.+..|.++-..       ++ .+...|.++.|++|++.+.+|+.          +.++|++||||++|
T Consensus       222 ~~~~p~~f~I-~Dts~~~~yv~~-------g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~~~~~~l~~~~~Al~~F  293 (1015)
T 3cmm_A          222 EVLGPFAFRI-GSVKEYGEYKKG-------GIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQF  293 (1015)
T ss_dssp             EEEETTEEEC-SCCTTTCCCCBC-------CEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGTHHHHHHHHHHHHHHHH
T ss_pred             EEcCCceeEe-cccchhhhhhcC-------ceeEEecCCcccCHHHHHHHHcChHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            3455666665 335555444310       11 12234667899999999998842          57899999999999


Q ss_pred             HHHh-CCCCCCCCCCChhhHHHHHHHHHHHHHhhCCC----CCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        136 YTEH-NTYPGEYDDQVEPDIVKLKSCISKLTAEWGCG----VLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       136 ~~~~-gr~Pg~~~~~~~~D~~~l~~i~~~i~~~~~~~----~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      .++| ||+|++++   ++|+++|.+++++++.+.+..    ..++++++++++|++++|||||||++||+|||||||+|
T Consensus       294 ~~~~~gr~P~~~~---~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKai  369 (1015)
T 3cmm_A          294 AVRHNGELPRTMN---DEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKAC  369 (1015)
T ss_dssp             HHHTTTCCCCTTC---HHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCCCC---HHHHHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHh
Confidence            9999 99999887   999999999999999875532    35889999999999999999999999999999999974

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=99.66  E-value=2.3e-17  Score=147.53  Aligned_cols=99  Identities=23%  Similarity=0.213  Sum_probs=82.1

Q ss_pred             CCCCChhhHHHHHhCCCc----------hHHHHHHHHHHHHHHHHhCCCCCC-CCCCChhhHHHHHHHHHHHHHhhCCCC
Q psy17420        104 PRTSNARQISEALENGDG----------LLIYHVMLRGVDKFYTEHNTYPGE-YDDQVEPDIVKLKSCISKLTAEWGCGV  172 (209)
Q Consensus       104 p~~~~f~sL~~~l~~p~s----------~~~~y~~l~Al~~F~~~~gr~Pg~-~~~~~~~D~~~l~~i~~~i~~~~~~~~  172 (209)
                      |.+..|.+|++++..|..          ++++|++++|+++|.++|||+|+. ++   ++|+++|.+++.+++.+.+++.
T Consensus       208 ~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~---~~d~~~l~~~a~~~~~~~~~~~  284 (346)
T 1y8q_A          208 KKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTY---EEDSELLLQIRNDVLDSLGISP  284 (346)
T ss_dssp             EEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGH---HHHHHHHHHHHHHHHHTTTCCG
T ss_pred             eceeeccCHHHHhcCCchhhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHHHHHHhcCCCc
Confidence            455678888887766643          466999999999999999999963 33   8999999999999999887664


Q ss_pred             C-ChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        173 L-SKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       173 ~-i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      . +++++++++    .++|||||||+||++||||||++
T Consensus       285 ~~~~~~~~~~~----~~~l~pv~AiiGGi~aQEviK~i  318 (346)
T 1y8q_A          285 DLLPEDFVRYC----FSEMAPVCAVVGGILAQEIVKAL  318 (346)
T ss_dssp             GGSCGGGGGSS----CSBCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHh----cCCccHHHHHHHHHHHHHHHHHh
Confidence            3 777776654    89999999999999999999975

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.57  E-value=0.011  Score=53.94  Aligned_cols=64  Identities=11%  Similarity=0.042  Sum_probs=49.3

Q ss_pred             CCCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        145 EYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       145 ~~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      ..+.+..++++.+.+.+++.....|+. .++...++.++......+.|++|++||+.|||+||++
T Consensus       240 ~~d~d~~~~~~~v~~~a~~~~~~~gi~-~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l  303 (434)
T 1tt5_B          240 PLDGDDPEHIQWIFQKSLERASQYNIR-GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIA  303 (434)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHHcCCC-ccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHH
Confidence            334344677788888888888888765 2455567777777677899999999999999999974

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=96.04  E-value=0.015  Score=56.34  Aligned_cols=63  Identities=11%  Similarity=0.045  Sum_probs=49.7

Q ss_pred             CCCCChhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        146 YDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       146 ~~~~~~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      .+.+..++++.+.+.+++.....|+. .++...+..++......+.|++|++||+.|||+||++
T Consensus       612 ~d~~~~~~~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l  674 (805)
T 2nvu_B          612 LDGDDPEHIQWIFQKSLERASQYNIR-GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIA  674 (805)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCC-CcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHH
Confidence            34344677888888888888888765 3455667788887788899999999999999999974

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=81.15  E-value=0.65  Score=38.74  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhC
Q psy17420        187 GGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       187 ~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      .+.+.|+.+++|+++|+||||.|
T Consensus       187 ~g~~~p~~~~~g~~~A~e~lk~l  209 (251)
T 1zud_1          187 AGVVGPVVGVMGTLQALEAIKLL  209 (251)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	2e-47
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	9e-06

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 2e-47
 Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 45/209 (21%)

Query: 1   YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAA 60
           YR++A +DA  +     +LL  +GQ   +I+E ++KL C N++F+ V+R           
Sbjct: 341 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRS-------- 392

Query: 61  LESARICLINATGLGTECGPVNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGD 120
                                                +A+EY   T N  +I  +++N D
Sbjct: 393 -------------------------------------LAEEYGLDTINKDEIISSMDNPD 415

Query: 121 GLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSCISKLTAEWGCGVLSKDDYLH 180
             ++ ++MLR VD+F+ +   YPG  + QVE DI KLKSC++    E+G  V+ KDDY+H
Sbjct: 416 NEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVH 475

Query: 181 EICRYGGGELHAVSSFLGGCAAQEVIKIL 209
           E CRYG  E H +++FLGG AAQEVIKI+
Sbjct: 476 EFCRYGAAEPHTIAAFLGGAAAQEVIKII 504

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 52  LWGDHGQAALESARICLINATGLGTECGPVNFCPVEGLLLSSISS-GIADEYDPRTSN-A 109
           LWGDHGQ ALESA +CLINAT  GTE        ++ L+L  I S  I D       +  
Sbjct: 14  LWGDHGQEALESAHVCLINATATGTEI-------LKNLVLPGIGSFTIIDGNQVSGEDAG 66

Query: 110 RQI 112
              
Sbjct: 67  NNF 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.83

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-35  Score=272.41  Aligned_cols=164  Identities=44%  Similarity=0.800  Sum_probs=155.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhhccCceeeecccCCCcchhhHHHHHHHhhhcCCCCCcCCC
Q psy17420          1 YRDQAGRDADVIYRRAQQLLHQLGQPSSAITEAQVKLFCRNASFIHVIRGTLWGDHGQAALESARICLINATGLGTECGP   80 (209)
Q Consensus         1 y~~KA~~D~~~v~~~v~~~~~~~g~~~~~I~~~~I~~FCKNa~~L~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
                      |++||.+|++.|.++|++++.++|++++.|++++|+.||||+++|++++|+                             
T Consensus       341 Y~~Ka~~D~~~~~~~v~~~l~~~~~~~~~i~~~~i~~F~kn~~~l~~~~~~-----------------------------  391 (529)
T d1yova1         341 YREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCR-----------------------------  391 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTTTSCEEECCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHhhhhhcceeccC-----------------------------
Confidence            899999999999999999999999999999999999999999999999999                             


Q ss_pred             CCccCcccccccccCCCCccccCCCCCChhhHHHHHhCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHH
Q psy17420         81 VNFCPVEGLLLSSISSGIADEYDPRTSNARQISEALENGDGLLIYHVMLRGVDKFYTEHNTYPGEYDDQVEPDIVKLKSC  160 (209)
Q Consensus        81 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~f~sL~~~l~~p~s~~~~y~~l~Al~~F~~~~gr~Pg~~~~~~~~D~~~l~~i  160 (209)
                                      ++.+++.+.......+....++|.++..+|++|+|+++|.++|||+||+++.+..+|+.++..+
T Consensus       392 ----------------~l~~e~~~~~~~~~~l~~~~~~~~~~~~l~~~~~a~~~f~~~~~r~P~~~~~~~~~d~~~l~~~  455 (529)
T d1yova1         392 ----------------SLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSC  455 (529)
T ss_dssp             ----------------CHHHHHCTTTSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHSSSCTTSSTTTHHHHHHHHHHH
T ss_pred             ----------------chHhhhcccccchhHHhhhhhcccchHHHHHHHHHHHHHHHHhCCCCCCccchhHhHHHHHHHH
Confidence                            6778888777777788888899999999999999999999999999999988888999999999


Q ss_pred             HHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        161 ISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       161 ~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      +.+++++.+.+..+++++++|++|+++++||||||++||||||||||+|
T Consensus       456 ~~~~~~~~~~~~~~~~~~i~e~~r~~~~el~~vaA~~GGiaaQEviK~i  504 (529)
T d1yova1         456 LTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII  504 (529)
T ss_dssp             HHHHHHHHTCCCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccchHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHH
Confidence            9999999998888999999999999999999999999999999999985

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0028  Score=55.64  Aligned_cols=58  Identities=10%  Similarity=0.039  Sum_probs=42.6

Q ss_pred             hhhHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhC
Q psy17420        151 EPDIVKLKSCISKLTAEWGCGVLSKDDYLHEICRYGGGELHAVSSFLGGCAAQEVIKIL  209 (209)
Q Consensus       151 ~~D~~~l~~i~~~i~~~~~~~~~i~e~~i~e~~r~~~~EL~pvaAiiGGiaAQEvIK~i  209 (209)
                      .+.+..+.+.++.....++++. ++...++.++....-.+.+++|++||+++||+||++
T Consensus       243 ~~~i~~i~~~a~~ra~~~~I~~-~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~l  300 (426)
T d1yovb1         243 PEHIQWIFQKSLERASQYNIRG-VTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIA  300 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence            4445555555556666666553 455667888887777899999999999999999974