Psyllid ID: psy17456

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGKQKSPV
cHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccc
HHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccEccEcccHHHHHHHHHHHHHcccccccccccccccccc
MYAYVDQMQFAGRDLVSALRYFLegfrlpgeaQKIDRLMEKFASRycennpnvglqncddtEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLtanspitemKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTtdlhspqvkskmtKEQYIRLnrgisdsqdlpeAYLSKIYDEIADQEIKmksankpgkqkspv
myayvdqmQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTdlhspqvksKMTKEQYIRlnrgisdsqdlpEAYLSKIYDEIADQEIKmksankpgkqkspv
MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGKQKSPV
**AYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLH************YIRLN***********AYLSKIYDE*********************
MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQ*****************
MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKS***********
MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQEI***************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGKQKSPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query203 2.2.26 [Sep-21-2011]
Q9Y6D5 1785 Brefeldin A-inhibited gua yes N/A 0.374 0.042 0.828 1e-31
Q7TSU1 1791 Brefeldin A-inhibited gua yes N/A 0.374 0.042 0.815 1e-31
A2A5R2 1792 Brefeldin A-inhibited gua yes N/A 0.374 0.042 0.815 1e-31
G3X9K3 1846 Brefeldin A-inhibited gua no N/A 0.532 0.058 0.633 3e-31
O46382 1849 Brefeldin A-inhibited gua no N/A 0.532 0.058 0.633 3e-31
Q9Y6D6 1849 Brefeldin A-inhibited gua no N/A 0.532 0.058 0.633 3e-31
D4A631 1846 Brefeldin A-inhibited gua no N/A 0.532 0.058 0.623 8e-31
Q9LPC5 1750 Brefeldin A-inhibited gua yes N/A 0.354 0.041 0.586 6e-19
Q9P7V5 1822 Protein transport protein yes N/A 0.285 0.031 0.640 1e-17
F4JSZ5 1687 Brefeldin A-inhibited gua no N/A 0.394 0.047 0.543 2e-17
>sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3 Back     alignment and function desciption
 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 71/76 (93%)

Query: 52  NVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKA 111
           ++GLQNCDDTE+ASLCLEGIRCAIRIACIF + LER+AYVQALARF+LLTA+S ITEMK 
Sbjct: 906 SIGLQNCDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQ 965

Query: 112 KNIETIKTLINVAHTD 127
           KNI+TIKTLI VAHTD
Sbjct: 966 KNIDTIKTLITVAHTD 981
Promotes guanine-nucleotide exchange on ARF1, ARF5 and ARF6. Promotes the activation of ARF1/ARF5/ARF6 through replacement of GDP with GTP.
Homo sapiens (taxid: 9606)
>sp|Q7TSU1|BIG2_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Rattus norvegicus GN=Arfgef2 PE=1 SV=1 Back     alignment and function description
>sp|A2A5R2|BIG2_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Mus musculus GN=Arfgef2 PE=1 SV=1 Back     alignment and function description
>sp|G3X9K3|BIG1_MOUSE Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Mus musculus GN=Arfgef1 PE=2 SV=1 Back     alignment and function description
>sp|O46382|BIG1_BOVIN Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Bos taurus GN=ARFGEF1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y6D6|BIG1_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens GN=ARFGEF1 PE=1 SV=2 Back     alignment and function description
>sp|D4A631|BIG1_RAT Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Rattus norvegicus GN=Arfgef1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LPC5|BIG3_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9P7V5|SEC7B_SCHPO Protein transport protein sec72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec72 PE=1 SV=1 Back     alignment and function description
>sp|F4JSZ5|BIG1_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
432112659 1703 Brefeldin A-inhibited guanine nucleotide 0.783 0.093 0.552 1e-49
307186804 1693 Brefeldin A-inhibited guanine nucleotide 0.374 0.044 0.894 2e-33
357631280 1639 hypothetical protein KGM_10291 [Danaus p 0.600 0.074 0.609 3e-33
345486370 1701 PREDICTED: brefeldin A-inhibited guanine 0.369 0.044 0.894 3e-33
350411439 1697 PREDICTED: brefeldin A-inhibited guanine 0.369 0.044 0.894 3e-33
340729749 1697 PREDICTED: brefeldin A-inhibited guanine 0.369 0.044 0.894 3e-33
383853968 1697 PREDICTED: brefeldin A-inhibited guanine 0.369 0.044 0.894 4e-33
380017271 1697 PREDICTED: brefeldin A-inhibited guanine 0.369 0.044 0.894 4e-33
328778549 1697 PREDICTED: brefeldin A-inhibited guanine 0.369 0.044 0.894 4e-33
322797660 322 hypothetical protein SINV_05038 [Solenop 0.374 0.236 0.881 7e-33
>gi|432112659|gb|ELK35371.1| Brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Myotis davidii] Back     alignment and taxonomy information
 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/199 (55%), Positives = 126/199 (63%), Gaps = 40/199 (20%)

Query: 1   MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNP--------- 51
           MYAYVDQ  F+G+D VSALR FLEGFRLPGEAQKIDRLMEKFA+RY E N          
Sbjct: 725 MYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASAD 784

Query: 52  ------------------------------NVGLQNCDDTEIASLCLEGIRCAIRIACIF 81
                                         +VGLQ+CDDTE+ASLCLEGIRCAIRIACIF
Sbjct: 785 TAYVLAYSIIMLTTDLHSPQLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIF 844

Query: 82  HLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAY-SIIML 140
            + LER+AYVQALARFTLLT +S ITEMK KNI+TIKTLI VAHTD      ++  I+  
Sbjct: 845 SIQLERDAYVQALARFTLLTVSSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKC 904

Query: 141 TTDLHSPQVKSKMTKEQYI 159
            + L   Q+     K +YI
Sbjct: 905 ISQLELAQLIGTGVKPRYI 923

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|307186804|gb|EFN72227.1| Brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|357631280|gb|EHJ78870.1| hypothetical protein KGM_10291 [Danaus plexippus] Back     alignment and taxonomy information
>gi|345486370|ref|XP_001605970.2| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|350411439|ref|XP_003489352.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340729749|ref|XP_003403158.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383853968|ref|XP_003702494.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|380017271|ref|XP_003692583.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Apis florea] Back     alignment and taxonomy information
>gi|328778549|ref|XP_003249515.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|322797660|gb|EFZ19669.1| hypothetical protein SINV_05038 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query203
UNIPROTKB|E1BVQ3 1801 ARFGEF2 "Uncharacterized prote 0.532 0.059 0.633 2.2e-47
FB|FBgn0028538 1653 Sec71 "Sec71 ortholog (S. cere 0.532 0.065 0.623 2.5e-46
UNIPROTKB|F1SBE8 1792 ARFGEF2 "Uncharacterized prote 0.532 0.060 0.623 5.1e-46
UNIPROTKB|E2QVB0 1785 ARFGEF2 "Uncharacterized prote 0.532 0.060 0.623 6.4e-46
UNIPROTKB|Q9Y6D5 1785 ARFGEF2 "Brefeldin A-inhibited 0.532 0.060 0.623 6.4e-46
UNIPROTKB|E1BKI9 1788 ARFGEF2 "Uncharacterized prote 0.532 0.060 0.623 6.4e-46
RGD|631430 1791 Arfgef2 "ADP-ribosylation fact 0.532 0.060 0.614 8.2e-46
MGI|MGI:2139354 1792 Arfgef2 "ADP-ribosylation fact 0.532 0.060 0.614 8.2e-46
ZFIN|ZDB-GENE-090312-50 1846 si:dkey-192i18.4 "si:dkey-192i 0.374 0.041 0.802 3.9e-45
ZFIN|ZDB-GENE-030131-108 1849 arfgef1 "ADP-ribosylation fact 0.758 0.083 0.512 2.6e-28
UNIPROTKB|E1BVQ3 ARFGEF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 329 (120.9 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
 Identities = 69/109 (63%), Positives = 83/109 (76%)

Query:    52 NVGLQNCDDTEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKA 111
             +VGLQNCDDTE+ASLCLEGIRCAIRIACIF + LER+AYVQALARF+LLTA+S ITEMK 
Sbjct:   922 SVGLQNCDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQ 981

Query:   112 KNIETIKTLINVAHTDDTAYVLAY-SIIMLTTDLHSPQVKSKMTKEQYI 159
             KNI+TIKTLI VAHTD      ++  I+   + L   Q+     K +Y+
Sbjct:   982 KNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKTRYL 1030
GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA
GO:0000139 "Golgi membrane" evidence=IEA
GO:0001881 "receptor recycling" evidence=IEA
GO:0005815 "microtubule organizing center" evidence=IEA
GO:0005829 "cytosol" evidence=IEA
GO:0006893 "Golgi to plasma membrane transport" evidence=IEA
GO:0007032 "endosome organization" evidence=IEA
GO:0010256 "endomembrane system organization" evidence=IEA
GO:0032760 "positive regulation of tumor necrosis factor production" evidence=IEA
GO:0034237 "protein kinase A regulatory subunit binding" evidence=IEA
GO:0035556 "intracellular signal transduction" evidence=IEA
GO:0055037 "recycling endosome" evidence=IEA
FB|FBgn0028538 Sec71 "Sec71 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBE8 ARFGEF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QVB0 ARFGEF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6D5 ARFGEF2 "Brefeldin A-inhibited guanine nucleotide-exchange protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BKI9 ARFGEF2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|631430 Arfgef2 "ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2139354 Arfgef2 "ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090312-50 si:dkey-192i18.4 "si:dkey-192i18.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-108 arfgef1 "ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
cd00171185 cd00171, Sec7, Sec7 domain; Domain named after the 4e-29
pfam01369188 pfam01369, Sec7, Sec7 domain 2e-28
PLN03076 1780 PLN03076, PLN03076, ARF guanine nucleotide exchang 9e-28
smart00222189 smart00222, Sec7, Sec7 domain 1e-25
cd00171185 cd00171, Sec7, Sec7 domain; Domain named after the 2e-25
COG5307 1024 COG5307, COG5307, SEC7 domain proteins [General fu 3e-25
pfam01369188 pfam01369, Sec7, Sec7 domain 2e-24
smart00222189 smart00222, Sec7, Sec7 domain 2e-22
PLN03076 1780 PLN03076, PLN03076, ARF guanine nucleotide exchang 3e-20
COG5307 1024 COG5307, COG5307, SEC7 domain proteins [General fu 5e-17
PLN03076 1780 PLN03076, PLN03076, ARF guanine nucleotide exchang 8e-13
>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S Back     alignment and domain information 
 Score =  106 bits (267), Expect = 4e-29
 Identities = 35/61 (57%), Positives = 44/61 (72%)

Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
           D AY LAYSIIML TDLH+P VK KMT E +I+  RGI+D +D P  +L ++YD I + E
Sbjct: 125 DAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKNNE 184

Query: 188 I 188
           I
Sbjct: 185 I 185

cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity. Length = 185
>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain Back     alignment and domain information
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>gnl|CDD|214569 smart00222, Sec7, Sec7 domain Back     alignment and domain information
>gnl|CDD|238100 cd00171, Sec7, Sec7 domain; Domain named after the S Back     alignment and domain information
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|216460 pfam01369, Sec7, Sec7 domain Back     alignment and domain information
>gnl|CDD|214569 smart00222, Sec7, Sec7 domain Back     alignment and domain information
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>gnl|CDD|227623 COG5307, COG5307, SEC7 domain proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 203
KOG0928|consensus 1386 100.0
cd00171185 Sec7 Sec7 domain; Domain named after the S. cerevi 100.0
PF01369190 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 do 100.0
smart00222187 Sec7 Sec7 domain. Domain named after the S. cerevi 100.0
KOG0929|consensus 1514 100.0
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 100.0
COG5307 1024 SEC7 domain proteins [General function prediction 100.0
KOG0930|consensus 395 100.0
KOG0931|consensus 627 100.0
KOG0932|consensus 774 99.94
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 99.64
KOG0929|consensus 1514 99.51
KOG0928|consensus 1386 92.27
>KOG0928|consensus Back     alignment and domain information 
Probab=100.00  E-value=1e-43  Score=352.81  Aligned_cols=130  Identities=45%  Similarity=0.771  Sum_probs=118.3

Q ss_pred             ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhhhhchhhhhhhhhh
Q psy17456          1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDDTEIASLCLEGIRCAIRIACI   80 (203)
Q Consensus         1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~q~~~d~~~~~~cL~G~r~ai~ia~~   80 (203)
                      |++|+..|||.||+||+|||.||.+||||||||+|+||||+||++||.+|+...+-+.                      
T Consensus       579 Ln~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEAFSery~~~n~~~~~~~k----------------------  636 (1386)
T KOG0928|consen  579 LNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEAFSERYYSDNSPDIFADK----------------------  636 (1386)
T ss_pred             HHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcCCCcccccc----------------------
Confidence            5799999999999999999999999999999999999999999999999875332211                      


Q ss_pred             hcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHHH
Q psy17456         81 FHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIR  160 (203)
Q Consensus        81 ~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi~  160 (203)
                                                                    | .+|+||||+||||||.||||||+|||++||+|
T Consensus       637 ----------------------------------------------D-avFvLsYSIIMLNTDqHNpqVK~~MT~dDf~r  669 (1386)
T KOG0928|consen  637 ----------------------------------------------D-AVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIR  669 (1386)
T ss_pred             ----------------------------------------------c-hhhhhhhhhheecccccChhhhccCCHHHHhh
Confidence                                                          1 14469999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCCCC
Q psy17456        161 LNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPGKQ  199 (203)
Q Consensus       161 n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~  199 (203)
                      |+||+|+|+|||++||.+||++|+.+||+||+++.+...
T Consensus       670 Nlrg~n~g~DFpreyLseiY~SIk~~EIvmPee~hG~~~  708 (1386)
T KOG0928|consen  670 NLRGINGGKDFPREYLSEIYQSIKTNEIVMPEEHHGTEE  708 (1386)
T ss_pred             hcccccCCCCCCHHHHHHHHHHHhhcceecccccCCchh
Confidence            999999999999999999999999999999999887654

>cd00171 Sec7 Sec7 domain; Domain named after the S Back     alignment and domain information
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region [] Back     alignment and domain information
>smart00222 Sec7 Sec7 domain Back     alignment and domain information
>KOG0929|consensus Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>COG5307 SEC7 domain proteins [General function prediction only] Back     alignment and domain information
>KOG0930|consensus Back     alignment and domain information
>KOG0931|consensus Back     alignment and domain information
>KOG0932|consensus Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG0929|consensus Back     alignment and domain information
>KOG0928|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
3ltl_A211 Crystal Structure Of Human Big1 Sec7 Domain Length 4e-26
3l8n_A202 Crystal Structure Of A Domain Of Brefeldin A-Inhibi 3e-22
1re0_B221 Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe 1e-17
1r8q_E203 Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A 3e-15
1r8s_E203 Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain C 3e-15
1r8m_E203 Sec7 Domain Of The Arf Exchange Factor Arno With Br 3e-15
4a4p_A192 Crystal Structure Of The Sec7 Domain From Human Cyt 4e-14
1bc9_A200 Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average 4e-14
1ku1_A230 Crystal Structure Of The Sec7 Domain Of Yeast Gea2 1e-13
2r0d_A347 Crystal Structure Of Autoinhibited Form Of Grp1 Arf 1e-13
2r0d_A 347 Crystal Structure Of Autoinhibited Form Of Grp1 Arf 4e-12
1pbv_A195 Sec7 Domain Of The Exchange Factor Arno Length = 19 2e-13
1pbv_A195 Sec7 Domain Of The Exchange Factor Arno Length = 19 6e-13
2r09_A347 Crystal Structure Of Autoinhibited Form Of Grp1 Arf 2e-12
2r09_A 347 Crystal Structure Of Autoinhibited Form Of Grp1 Arf 5e-11
1xsz_A356 The Structure Of Ralf Length = 356 9e-12
1xsz_A 356 The Structure Of Ralf Length = 356 8e-07
1xt0_B203 The Structure Of N-Terminal Sec7 Domain Of Ralf Len 1e-10
1xt0_B203 The Structure Of N-Terminal Sec7 Domain Of Ralf Len 2e-05
>pdb|3LTL|A Chain A, Crystal Structure Of Human Big1 Sec7 Domain Length = 211 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 62/70 (88%)
Query: 128 DTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIYDEIADQE 187
           DTAYVLAYSIIMLTTDLHSPQVK+KMTKEQYI++NRGI+DS+DLPE YLS IY+EIA ++
Sbjct: 142 DTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSAIYNEIAGKK 201
Query: 188 IKMKSANKPG 197
           I MK   + G
Sbjct: 202 ISMKETKETG 211
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited Guanine Nucleotide-Exchange Protein 2 (Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human). Northeast Structural Genomics Consortium Target Id Hr5562a Length = 202 Back     alignment and structure
>pdb|1RE0|B Chain B, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 221 Back     alignment and structure
>pdb|1R8Q|E Chain E, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A Sec7 Domain Length = 203 Back     alignment and structure
>pdb|1R8S|E Chain E, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying The Mutation Of The Catalytic Glutamate To Lysine Length = 203 Back     alignment and structure
>pdb|1R8M|E Chain E, Sec7 Domain Of The Arf Exchange Factor Arno With Brefeldin A- Sensitizing Mutations Length = 203 Back     alignment and structure
>pdb|4A4P|A Chain A, Crystal Structure Of The Sec7 Domain From Human Cytohesin1 Length = 192 Back     alignment and structure
>pdb|1BC9|A Chain A, Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure Length = 200 Back     alignment and structure
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2 Length = 230 Back     alignment and structure
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 Back     alignment and structure
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 Back     alignment and structure
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195 Back     alignment and structure
>pdb|1PBV|A Chain A, Sec7 Domain Of The Exchange Factor Arno Length = 195 Back     alignment and structure
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 Back     alignment and structure
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347 Back     alignment and structure
>pdb|1XSZ|A Chain A, The Structure Of Ralf Length = 356 Back     alignment and structure
>pdb|1XSZ|A Chain A, The Structure Of Ralf Length = 356 Back     alignment and structure
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf Length = 203 Back     alignment and structure
>pdb|1XT0|B Chain B, The Structure Of N-Terminal Sec7 Domain Of Ralf Length = 203 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query203
1ku1_A230 ARF guanine-nucleotide exchange factor 2; SEC7 dom 3e-31
1ku1_A230 ARF guanine-nucleotide exchange factor 2; SEC7 dom 2e-22
3ltl_A211 Brefeldin A-inhibited guanine nucleotide-exchange 6e-31
3ltl_A211 Brefeldin A-inhibited guanine nucleotide-exchange 2e-23
1r8s_E203 ARNO; protein transport/exchange factor, protein t 2e-30
1r8s_E203 ARNO; protein transport/exchange factor, protein t 1e-20
2r09_A 347 Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph 4e-24
2r09_A347 Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph 4e-20
1xsz_A 356 Guanine nucleotide exchange protein; ARF guanine n 4e-24
1xsz_A356 Guanine nucleotide exchange protein; ARF guanine n 6e-19
1xsz_A356 Guanine nucleotide exchange protein; ARF guanine n 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230 Back     alignment and structure
 Score =  112 bits (282), Expect = 3e-31
 Identities = 31/75 (41%), Positives = 44/75 (58%)

Query: 118 KTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLS 177
             +  V    D+ ++L+YSIIML TDLH+PQVK  M+ E Y    +G  + +D P  YL 
Sbjct: 150 DDISTVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLD 209

Query: 178 KIYDEIADQEIKMKS 192
           ++Y  I D+EI M  
Sbjct: 210 RVYCSIRDKEIVMPE 224
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Length = 230 Back     alignment and structure
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211 Back     alignment and structure
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} PDB: 3l8n_A 3swv_A Length = 211 Back     alignment and structure
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203 Back     alignment and structure
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Length = 203 Back     alignment and structure
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347 Back     alignment and structure
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347 Back     alignment and structure
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356 Back     alignment and structure
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356 Back     alignment and structure
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Length = 356 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
3ltl_A211 Brefeldin A-inhibited guanine nucleotide-exchange 100.0
1r8s_E203 ARNO; protein transport/exchange factor, protein t 100.0
1ku1_A230 ARF guanine-nucleotide exchange factor 2; SEC7 dom 100.0
1xsz_A 356 Guanine nucleotide exchange protein; ARF guanine n 100.0
2r09_A 347 Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph 100.0
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A Back     alignment and structure
Probab=100.00  E-value=4.2e-47  Score=320.36  Aligned_cols=128  Identities=73%  Similarity=1.116  Sum_probs=112.7

Q ss_pred             ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCC-CCCCCchHHHHhhhhchhhhhhhhh
Q psy17456          1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVG-LQNCDDTEIASLCLEGIRCAIRIAC   79 (203)
Q Consensus         1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~-~q~~~d~~~~~~cL~G~r~ai~ia~   79 (203)
                      |++|+++|||+|++||+|||.||.+|+||||+|+||||||+||++||+|||..+ +.+                      
T Consensus        83 L~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s----------------------  140 (211)
T 3ltl_A           83 MYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFAS----------------------  140 (211)
T ss_dssp             HHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSS----------------------
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCC----------------------
Confidence            579999999999999999999999999999999999999999999999999842 221                      


Q ss_pred             hhcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHHHHH
Q psy17456         80 IFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYI  159 (203)
Q Consensus        80 ~~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~~Fi  159 (203)
                                                        .|+             +++++||+||||||||||+||+|||+++||
T Consensus       141 ----------------------------------~D~-------------~~iLaySiImLNTDlHn~~vk~kMt~~~Fi  173 (211)
T 3ltl_A          141 ----------------------------------ADT-------------AYVLAYSIIMLTTDLHSPQVKNKMTKEQYI  173 (211)
T ss_dssp             ----------------------------------HHH-------------HHHHHHHHHHHHHHHTCTTCCSCCCHHHHH
T ss_pred             ----------------------------------HHH-------------HHHHHHHHHHHhhhhcCccccCCCCHHHHH
Confidence                                              111             235899999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCHHHHHHHHHHhhhCccccccCCCCC
Q psy17456        160 RLNRGISDSQDLPEAYLSKIYDEIADQEIKMKSANKPG  197 (203)
Q Consensus       160 ~n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~~~~~~~  197 (203)
                      +|+||+|+|+|||+++|++||++|+.+||+|+++.+.|
T Consensus       174 ~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~~  211 (211)
T 3ltl_A          174 KMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETKETG  211 (211)
T ss_dssp             HHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC------
T ss_pred             HHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCCCCC
Confidence            99999999999999999999999999999999988764
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A Back     alignment and structure
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B* Back     alignment and structure
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B Back     alignment and structure
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 203
d1ku1a_211 a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 2e-42
d1r8se_187 a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s 1e-24
d1r8se_187 a.118.3.1 (E:) Exchange factor ARNO {Human (Homo s 3e-18
d1xsza1197 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio 3e-23
d1xsza1197 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legio 3e-18
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 211 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  140 bits (353), Expect = 2e-42
 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 55/190 (28%)

Query: 1   MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGLQNCDD 60
           +  Y+    F+G  +  A+R  L  FRLPGE+Q+I+R++E F+S YCEN      Q+ D 
Sbjct: 76  LNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCEN------QDYDP 129

Query: 61  TEIASLCLEGIRCAIRIACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTL 120
           ++I+    + I                                                 
Sbjct: 130 SKISDNAEDDI------------------------------------------------- 140

Query: 121 INVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKEQYIRLNRGISDSQDLPEAYLSKIY 180
             V    D+ ++L+YSIIML TDLH+PQVK  M+ E Y    +G  + +D P  YL ++Y
Sbjct: 141 STVQPDADSVFILSYSIIMLNTDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVY 200

Query: 181 DEIADQEIKM 190
             I D+EI M
Sbjct: 201 CSIRDKEIVM 210
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197 Back     information, alignment and structure
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query203
d1ku1a_211 ARF guanine-exchange factor 2, Gea2 {Baker's yeast 100.0
d1xsza1197 RalF, N-terminal domain {Legionella pneumophila [T 100.0
d1r8se_187 Exchange factor ARNO {Human (Homo sapiens) [TaxId: 100.0
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Sec7 domain
family: Sec7 domain
domain: ARF guanine-exchange factor 2, Gea2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-45  Score=304.15  Aligned_cols=132  Identities=40%  Similarity=0.714  Sum_probs=112.8

Q ss_pred             ChhhhhcCCCCCCCHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCCCC----CCCCchHHHHhhhhchhhhhh
Q psy17456          1 MYAYVDQMQFAGRDLVSALRYFLEGFRLPGEAQKIDRLMEKFASRYCENNPNVGL----QNCDDTEIASLCLEGIRCAIR   76 (203)
Q Consensus         1 ~~~f~~~fdF~~~~l~~ALR~fl~~f~LPgEsQ~IdRi~e~Fa~~y~~~Np~~~~----q~~~d~~~~~~cL~G~r~ai~   76 (203)
                      |++|+++|||+|++||+|||.||.+|+||||||+||||||+||++||+|||..+.    ...++.               
T Consensus        76 L~~y~~~fdf~~~~id~ALR~~l~~f~LPgEaQ~IdRile~Fa~~Y~~~N~~~~~~~~~~~~~~~---------------  140 (211)
T d1ku1a_          76 LNEYIRLFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDI---------------  140 (211)
T ss_dssp             HHHHHHTSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCG---------------
T ss_pred             HHHHHhccCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHhHHHHhcCCCCcccccccccccc---------------
Confidence            5799999999999999999999999999999999999999999999999985320    000000               


Q ss_pred             hhhhhcchhhhHHHHHHHHHHhhhcCCCchhHhhhhhHHHHHHHhhhcCCchhHHHHHHHHHHHhhccCCCccCCCcCHH
Q psy17456         77 IACIFHLTLERNAYVQALARFTLLTANSPITEMKAKNIETIKTLINVAHTDDTAYVLAYSIIMLTTDLHSPQVKSKMTKE  156 (203)
Q Consensus        77 ia~~~~~~~er~afi~al~~ft~l~~~~~~~e~~~KNve~ik~l~~ia~~dg~~l~ls~s~ImLnTDlHn~~vk~kMt~~  156 (203)
                       ...                              .++.|+             .++++||+||||||+|||+||+|||++
T Consensus       141 -~~~------------------------------f~s~d~-------------~y~L~ysiimLnTdlHnp~vk~kMt~~  176 (211)
T d1ku1a_         141 -STV------------------------------QPDADS-------------VFILSYSIIMLNTDLHNPQVKEHMSFE  176 (211)
T ss_dssp             -GGC------------------------------CCCHHH-------------HHHHHHHHHHHHHHHTCTTCSSCCCHH
T ss_pred             -ccc------------------------------ccCccH-------------HHHHHHHHHHHhhhccCCcccCCCCHH
Confidence             000                              012222             335899999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCCHHHHHHHHHHhhhCccccc
Q psy17456        157 QYIRLNRGISDSQDLPEAYLSKIYDEIADQEIKMK  191 (203)
Q Consensus       157 ~Fi~n~rgi~~~~d~~~~~L~~iY~~I~~~ei~~~  191 (203)
                      +|++|+||+|+|+|+|+++|++||++|+.+||+||
T Consensus       177 ~Fi~n~rgin~~~d~~~e~L~~iY~~I~~~ei~lP  211 (211)
T d1ku1a_         177 DYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMP  211 (211)
T ss_dssp             HHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHhcCcCCCCCCHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999997
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure