Psyllid ID: psy17466

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGFK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHccHHHccccccccccccccccEEEEcccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
msapqeqvsslplppvqyinNYTDElirrgrapkpplpihdsysmfgnqfnaddtiirplesqgikrlypqhFDRRRELRKLNHSLLVNFLDLIDLLvqcpdsprrtekveDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIenlpdtdldskllintddfnsndsnrkddasvdgvnpydRLMCElvdnmpltndgfk
Flexible Loop (DISEMBL)
msapqeqvsslplppvQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDdfnsndsnrkddasvdgvnPYDRLMCElvdnmpltndgfk
Low Complexity Region (SEG)
MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSllvnfldlidllvQCPDSPRRTEKVEDisllfihihhllNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGFK
Disordered region (IsUnstruct)
***************VQYINNYTDELIR**********IHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRV**************RFHVHLDRVNQILNQAIENLPDTDL**KLLI***********************YDRLMCELV***********
Disordered Region (DISOPRED)
******Q***LPLPPVQYINNYTD*************PIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPD*PRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQIL******************************************DRLMCELVDNMPLTND***
Disordered Region (DISEMBL)
**********LPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGFK
Disordered Region (DISPRO)
********SSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPD****************************GVNPYDRLMCELVDNMPLTND*F*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q7PR68	219	Mediator of RNA polymeras	yes	N/A	0.938	0.968	0.674	5e-79
Q17MI0	219	Mediator of RNA polymeras	N/A	N/A	0.938	0.968	0.641	5e-77
Q7ZV35	241	Mediator of RNA polymeras	yes	N/A	0.986	0.925	0.539	1e-64
Q6GPR9	228	Mediator of RNA polymeras	N/A	N/A	0.765	0.758	0.655	3e-64
Q3T123	233	Mediator of RNA polymeras	yes	N/A	0.955	0.927	0.536	5e-64
O43513	233	Mediator of RNA polymeras	yes	N/A	0.955	0.927	0.536	6e-64
Q2F7Z4	233	Mediator of RNA polymeras	yes	N/A	0.955	0.927	0.536	7e-64
Q5BJ48	229	Mediator of RNA polymeras	yes	N/A	0.955	0.943	0.530	1e-63
Q3B8I4	228	Mediator of RNA polymeras	N/A	N/A	0.955	0.947	0.532	2e-63
Q9CZB6	233	Mediator of RNA polymeras	yes	N/A	0.960	0.931	0.530	1e-62

>sp|Q7PR68|MED7_ANOGA Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2

 Score =  293 bits (751), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 167/212 (78%)

Query: 7   QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
           QVSSLPLPP QYIN YTDE IR+ RAPKPP PI D+Y+MFG+ F+ DD IIRPLESQG K
Sbjct: 8   QVSSLPLPPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFK 67

Query: 67  RLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
           RLYPQHFDRR+EL+KLNHSLLVNFLDLIDLLV  PDSPRR EK+ED+SLLF+HIHHLLNE
Sbjct: 68  RLYPQHFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNE 127

Query: 127 FRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTD 186
           FRPHQARETLRVMMELQ+RQR ET+QRF  HL++V +++  A  +LPD     +L    +
Sbjct: 128 FRPHQARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASLPDLTDADRLAGGLE 187

Query: 187 DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
             +  +S        +G +P DRLMCELVD M
Sbjct: 188 PMDVGESGDLAGGRGEGCHPLDRLMCELVDRM 219

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Anopheles gambiae (taxid: 7165)

>sp|Q17MI0|MED7_AEDAE Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1

 Score =  287 bits (734), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/212 (64%), Positives = 163/212 (76%)

Query: 7   QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
           QVSS PLPP QY   YTDE +R  RAPKPP PI  +Y MFG QF+ +D IIRPLE+QG K
Sbjct: 8   QVSSFPLPPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFK 67

Query: 67  RLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
           RLYPQHFDRR+EL+KLNHSLLVNFLDLIDLLV  PDSP+R EK+ED++LLF+HIHHLLNE
Sbjct: 68  RLYPQHFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNE 127

Query: 127 FRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTD 186
           FRPHQARETLRVMMELQ+RQR ET+QRF  HL++V +++N A  +LPD     +L    +
Sbjct: 128 FRPHQARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASLPDPAESDRLNSTVE 187

Query: 187 DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
             ++ D      +  +G +P DRLMCELVD M
Sbjct: 188 PMDTGDDGEAGKSRGEGCHPLDRLMCELVDKM 219

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q7ZV35|MED7_DANRE Mediator of RNA polymerase II transcription subunit 7 OS=Danio rerio GN=med7 PE=2 SV=1

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 123/228 (53%), Positives = 163/228 (71%), Gaps = 5/228 (2%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP PP+QYI  YTDE +R+G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPPPPMQYIKEYTDENVRKGLAPKPPPPIRDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           ESQGI+RL+P  FD +REL+KLN S+LVNFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60  ESQGIERLHPMQFDHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHM 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQGCLSSLPD-DLPLP 178

Query: 178 DSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           +S  +        +   + +   VD V     ++ +   N+P+  DG 
Sbjct: 179 NSSSMGEAGSAAGSSRLKTEPMDVDDVAGASCMVLQTDKNVPVKKDGV 226

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q6GPR9|MED7B_XENLA Mediator of RNA polymerase II transcription subunit 7-B OS=Xenopus laevis GN=med7-b PE=2 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 145/174 (83%), Gaps = 1/174 (0%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP+PP+QYI  YTDE IR+G APKPPLPI+DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPIPPMQYIKEYTDENIRKGLAPKPPLPINDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           E+QGI+RL+P  FD ++ELRKL  S+LVNFLD++D+L++ P S RR EK+EDI LLF+H+
Sbjct: 60  ETQGIERLHPVQFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDIKLLFVHM 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPD 174
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPD 173

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q3T123|MED7_BOVIN Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus GN=MED7 PE=2 SV=1

 Score =  244 bits (622), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 170/231 (73%), Gaps = 15/231 (6%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           ESQGI+RL+P  FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60  ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query: 178 DSKLLINTDDFNSNDSN--------RKDDAS--VDGVNPYDRLMCELVDNM 218
           ++ + + T+  +++DSN        +++++    D +   D  +C L+D M
Sbjct: 179 EAGMRVKTEPMDTDDSNNCIGQNEQQRENSGHRRDQIIEKDAALCVLIDEM 229

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|O43513|MED7_HUMAN Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1

 Score =  243 bits (621), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 170/231 (73%), Gaps = 15/231 (6%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           ESQGI+RL+P  FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60  ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query: 178 DSKLLINTDDFNSNDSN--------RKDDAS--VDGVNPYDRLMCELVDNM 218
           ++ + + T+  +++DSN        +++++    D +   D  +C L+D M
Sbjct: 179 EAGMRVKTEPMDADDSNNCTGQNEHQRENSGHRRDQIIEKDAALCVLIDEM 229

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q2F7Z4|MED7_PIG Mediator of RNA polymerase II transcription subunit 7 OS=Sus scrofa GN=MED7 PE=2 SV=2

 Score =  243 bits (620), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 165/231 (71%), Gaps = 15/231 (6%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           ESQGI+RL+P  FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60  ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query: 178 DSKLLINTDDFNSNDSNRKDDAS----------VDGVNPYDRLMCELVDNM 218
           ++ + +  +  +++DSN     S           D +   D  +C L+D M
Sbjct: 179 EAGMRVKAEPMDADDSNNCTGQSDQQRENSGHRRDQIIEKDAALCVLIDEM 229

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Sus scrofa (taxid: 9823)

>sp|Q5BJ48|MED7_XENTR Mediator of RNA polymerase II transcription subunit 7 OS=Xenopus tropicalis GN=med7 PE=2 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 163/230 (70%), Gaps = 14/230 (6%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP+PP+QYI  YTDE IR+G APKPPLPI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPIPPMQYIKEYTDENIRKGLAPKPPLPIKDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           E+QGI+RL+P  FD ++ELRKL  S+LVNFLD++D+L++ P S RR EK+ED+ LLF+H+
Sbjct: 60  ETQGIERLHPMQFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHM 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LP+ DL   
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPN-DLPLS 178

Query: 178 DSKLLINTD---------DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
           D  + + T+         D ++        +  +     D  MC ++D M
Sbjct: 179 DGAVSVKTEPMDVREPCTDHHAGPQEAAAASLKETTIDKDAAMCVIIDEM 228

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q3B8I4|MED7A_XENLA Mediator of RNA polymerase II transcription subunit 7-A OS=Xenopus laevis GN=med7-a PE=2 SV=1

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 162/229 (70%), Gaps = 13/229 (5%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP+PP+QYI  YTDE IR+  APKPP+PI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPIPPMQYIKEYTDENIRKSLAPKPPVPIKDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           E+QGI+RL+P  FD ++ELRKL  S+LVNFLD++D+L++ P S RR EK+ED+ LLF+H+
Sbjct: 60  ETQGIERLHPVQFDHKKELRKLLMSILVNFLDMLDILIRSPGSIRREEKLEDLKLLFVHM 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPD-DLPLP 178

Query: 178 DSKLLINTDDFN----SNDSNRKDDASVDGVNPY----DRLMCELVDNM 218
           D  + + T+  +      D +     +   V       D  MC ++D M
Sbjct: 179 DGTVSVKTEPMDVQEPCTDHHEGPQGAAASVKEATIDKDAAMCGIIDEM 227

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q9CZB6|MED7_MOUSE Mediator of RNA polymerase II transcription subunit 7 OS=Mus musculus GN=Med7 PE=2 SV=2

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 122/230 (53%), Positives = 161/230 (70%), Gaps = 13/230 (5%)

Query: 1   MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
           M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct: 1   MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query: 61  ESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHI 120
           ESQGI+RL+P  FD ++ELRKLN S+L+NFLDL+D+L++ P S +R EK+ED+ LLF+H+
Sbjct: 60  ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query: 121 HHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPD------ 174
           HHL+NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD      
Sbjct: 120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSE 179

Query: 175 --TDLDSKLLINTDDFNSNDSNRKDDASV----DGVNPYDRLMCELVDNM 218
               + ++ +   D+ N    N +   S     D +   D  +C L+D M
Sbjct: 180 AGMRVKAEPMDTDDNSNCPGQNEQQRESSGHRRDQIIEKDAALCVLIDEM 229

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
66526464	227	PREDICTED: mediator of RNA polymerase II	0.995	0.991	0.748	3e-91
307206150	226	Mediator of RNA polymerase II transcript	0.995	0.995	0.743	1e-84
322794556	226	hypothetical protein SINV_08452 [Solenop	0.995	0.995	0.747	2e-84
240848601	223	cofactor required for Sp1 transcriptiona	0.938	0.950	0.707	3e-83
380028308	227	PREDICTED: mediator of RNA polymerase II	0.995	0.991	0.740	4e-83
383849589	227	PREDICTED: mediator of RNA polymerase II	0.995	0.991	0.744	4e-83
350423623	227	PREDICTED: mediator of RNA polymerase II	0.995	0.991	0.744	7e-83
307183122	227	Mediator of RNA polymerase II transcript	0.995	0.991	0.744	1e-82
340727649	227	PREDICTED: mediator of RNA polymerase II	0.995	0.991	0.740	1e-82
332030315	227	Mediator of RNA polymerase II transcript	0.995	0.991	0.731	1e-81

>gi|66526464|ref|XP_396630.2| PREDICTED: mediator of RNA polymerase II transcription subunit 7 isoform 1 [Apis mellifera]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 193/227 (85%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PPLPIHD+YSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPLPIHDTYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRIETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+   +  + D  NP DR+MC+ +D+M  TN  +
Sbjct: 181 SKLAINTDAMESVDNLGSEQQTPDPCNPCDRIMCKTIDDMISTNGLY 227

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206150|gb|EFN84230.1| Mediator of RNA polymerase II transcription subunit 7 [Harpegnathos saltator]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/226 (74%), Positives = 194/226 (85%), Gaps = 1/226 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHDSY+MFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDSYTMFGNMFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDS 179
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT+LDS
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRLETAMRFQKHLEKVQEILQHALQMLPDTELDS 180

Query: 180 KLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           KL INTD   S D+   +  +VD  +P DR+MC+++D++  +N  F
Sbjct: 181 KLAINTDAMESIDNLGFEQQTVDPCSPSDRIMCKVIDDIISSNGLF 226

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794556|gb|EFZ17585.1| hypothetical protein SINV_08452 [Solenopsis invicta]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/226 (74%), Positives = 194/226 (85%), Gaps = 1/226 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHDSYSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDSYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDS 179
           IHHLLNEFRPHQARETLRVMMELQRRQR+ET+ RF  HL++V +IL  A++ LPDT+LDS
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRHETALRFQKHLEKVQEILQHALQMLPDTELDS 180

Query: 180 KLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           KL INTD   S D+   +  + D  +P DR+MC+++D+M  +N  F
Sbjct: 181 KLAINTDAMESIDNLGFEQQTQDPCSPSDRIMCKVIDDMLSSNGLF 226

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848601|ref|NP_001155776.1| cofactor required for Sp1 transcriptional activation subunit 9-like [Acyrthosiphon pisum] gi|239790395|dbj|BAH71762.1| ACYPI008793 [Acyrthosiphon pisum]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/212 (70%), Positives = 177/212 (83%)

Query: 7   QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
           QV SLPLPPVQY  NY+DE IRRGRA KPP  I ++Y+MFGN +NA+D+IIRPLESQG K
Sbjct: 9   QVCSLPLPPVQYFQNYSDENIRRGRASKPPPIIQETYTMFGNPYNAEDSIIRPLESQGFK 68

Query: 67  RLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNE 126
           RLYPQHFDRRRELRKLNHSLLVNFLDL+DLL+QCPDSPRR EKV+DISLLFIHIHHLLNE
Sbjct: 69  RLYPQHFDRRRELRKLNHSLLVNFLDLLDLLIQCPDSPRRAEKVDDISLLFIHIHHLLNE 128

Query: 127 FRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDLDSKLLINTD 186
           FRPHQARET+RVM++LQRRQRNET+ R   H+D+V+ IL Q +ENLPDT+LDSKL+++T 
Sbjct: 129 FRPHQARETVRVMLDLQRRQRNETTIRLQKHIDKVSFILQQTLENLPDTELDSKLMVDTS 188

Query: 187 DFNSNDSNRKDDASVDGVNPYDRLMCELVDNM 218
             +  +    D+  VD   P D+LMC L+D M
Sbjct: 189 KIDRLEQKNADEPRVDKCVPKDKLMCHLIDTM 220

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028308|ref|XP_003697848.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7-like [Apis florea]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 191/227 (84%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGR P+PP PIHD+YSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRTPRPPPPIHDTYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRIETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+   +  + D  NP DR+MC+ +D+M  TN  +
Sbjct: 181 SKLAINTDAMESVDNLGSEQQTPDPCNPCDRIMCKTIDDMISTNGLY 227

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849589|ref|XP_003700427.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7-like [Megachile rotundata]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 169/227 (74%), Positives = 193/227 (85%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHD+YSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDTYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRIETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+   +  + D  +P DR+MC+++D+M  TN  F
Sbjct: 181 SKLAINTDAMESVDNLGSEQHTPDPCSPSDRIMCKVIDDMISTNGLF 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423623|ref|XP_003493539.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7-like [Bombus impatiens]

 Score =  312 bits (800), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 169/227 (74%), Positives = 192/227 (84%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHDSYSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDSYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRIETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+   +  + D  +P DR+MC+ +D+M  TN  +
Sbjct: 181 SKLAINTDAMESVDNLGSEQQTPDPCSPSDRIMCKTIDDMISTNGLY 227

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183122|gb|EFN70039.1| Mediator of RNA polymerase II transcription subunit 7 [Camponotus floridanus]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/227 (74%), Positives = 192/227 (84%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHDSYSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDSYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRLETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+      + D  +P DR+MC+++D+M  +N  F
Sbjct: 181 SKLAINTDVMESVDNMGFKQQTQDPCSPSDRIMCKVIDDMISSNGLF 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727649|ref|XP_003402152.1| PREDICTED: mediator of RNA polymerase II transcription subunit 7-like [Bombus terrestris]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/227 (74%), Positives = 192/227 (84%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHD+YSMFGN FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDTYSMFGNVFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRIETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+   +  + D  +P DR+MC+ +D+M  TN  +
Sbjct: 181 SKLAINTDAMESVDNLGSEQQTPDPCSPSDRIMCKTIDDMISTNGLY 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030315|gb|EGI70058.1| Mediator of RNA polymerase II transcription subunit 7 [Acromyrmex echinatior]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 192/227 (84%), Gaps = 2/227 (0%)

Query: 1   MSAPQE-QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRP 59
           M+AP+  QVSSLPLPPVQYIN YTDE +RRGRAP+PP PIHD+YSMF N FNADDTIIRP
Sbjct: 1   MAAPEAIQVSSLPLPPVQYINLYTDENVRRGRAPRPPPPIHDTYSMFSNMFNADDTIIRP 60

Query: 60  LESQGIKRLYPQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIH 119
           LE+QGIKRLYPQHFDRRREL+KLNHSLLVNFLDLIDLLVQCPDSPRR EKVED+SLLFIH
Sbjct: 61  LEAQGIKRLYPQHFDRRRELKKLNHSLLVNFLDLIDLLVQCPDSPRRAEKVEDLSLLFIH 120

Query: 120 IHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDT-DLD 178
           IHHLLNEFRPHQARETLRVMMELQRRQR+ET+ RF  HL++V +IL  A++ LPDT +LD
Sbjct: 121 IHHLLNEFRPHQARETLRVMMELQRRQRHETALRFQKHLEKVQEILQHALQMLPDTSELD 180

Query: 179 SKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDGF 225
           SKL INTD   S D+   +  + D  +  DR+MC+++D+M  +N  F
Sbjct: 181 SKLAINTDAMESVDNLGFEQQTQDPCSSSDRIMCKVIDDMLSSNGLF 227

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
FB|FBgn0051390	220	MED7 "Mediator complex subunit	0.929	0.954	0.529	6.5e-51
UNIPROTKB|E1C6N9	230	LOC100857575 "Uncharacterized	0.955	0.939	0.484	1.4e-48
UNIPROTKB|F1MIJ0	233	HAVCR2 "Uncharacterized protei	0.955	0.927	0.471	4.7e-48
UNIPROTKB|Q3T123	233	MED7 "Mediator of RNA polymera	0.955	0.927	0.471	4.7e-48
UNIPROTKB|E2RK91	233	MED7 "Uncharacterized protein"	0.955	0.927	0.471	4.7e-48
UNIPROTKB|O43513	233	MED7 "Mediator of RNA polymera	0.955	0.927	0.471	4.7e-48
UNIPROTKB|G3X7Z8	471	HAVCR2 "Uncharacterized protei	0.849	0.407	0.522	7.7e-48
UNIPROTKB|E5RIE8	195	MED7 "Mediator of RNA polymera	0.849	0.984	0.522	7.7e-48
ZFIN|ZDB-GENE-030131-4823	241	med7 "mediator complex subunit	0.982	0.921	0.471	9.8e-48
UNIPROTKB|Q2F7Z4	233	MED7 "Mediator of RNA polymera	0.955	0.927	0.467	1.6e-47

FB|FBgn0051390 MED7 "Mediator complex subunit 7" [Drosophila melanogaster (taxid:7227)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 118/223 (52%), Positives = 144/223 (64%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPI--HDSYSMFGNQFNADDTIIR 58
             MS  + QVSSLP+PP +YI NYTDE IRR RAP+PP P   H+ YSMFG Q+N D+ +IR
Sbjct:     1 MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGIQYNNDE-MIR 59

Query:    59 PLESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXX 118
              LESQ IKRL P HFDRR+EL+KLNHS               PDSPRRTEK++D      
Sbjct:    60 SLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLILNPDSPRRTEKIDDISLLFV 119

Query:   119 XXXXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLP--DTD 176
                   NEFRPHQARETLRVMME+Q+RQR ET+ RF  HL+RV +I+N A   LP  D D
Sbjct:   120 NMHHLLNEFRPHQARETLRVMMEMQKRQRVETAARFQKHLERVREIVNTAFSALPVLDDD 179

Query:   177 LDS---KLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVD 216
              DS   K+    D   +N +  K+D S      +DR++C+LVD
Sbjct:   180 DDSGGAKIKTEVDPLEANAA-AKNDPSYQ----HDRMLCKLVD 217

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0016592 "mediator complex" evidence=IEA;IC;ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IC;ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1C6N9 LOC100857575 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 112/231 (48%), Positives = 144/231 (62%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE IR+G APKPP P+ DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIRKGLAPKPPPPVKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILVNFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSND-------SNRKDDASV---DGVNPYDRLMCELVDNM 218
             +  L + T+  +++D       S ++ D S    D V   D  MC ++D M
Sbjct:   179 EGGLGVKTEPMDTDDGSNCIGQSEKQRDRSGCKRDQVLDKDAAMCSIIDEM 229

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

UNIPROTKB|F1MIJ0 HAVCR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 109/231 (47%), Positives = 146/231 (63%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN--------RKDDASV--DGVNPYDRLMCELVDNM 218
             ++ + + T+  +++DSN        +++++    D +   D  +C L+D M
Sbjct:   179 EAGMRVKTEPMDADDSNNCIGQNEQQRENSGHRRDQIIEKDAALCVLIDEM 229

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q3T123 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Bos taurus (taxid:9913)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 109/231 (47%), Positives = 146/231 (63%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN--------RKDDASV--DGVNPYDRLMCELVDNM 218
             ++ + + T+  +++DSN        +++++    D +   D  +C L+D M
Sbjct:   179 EAGMRVKTEPMDTDDSNNCIGQNEQQRENSGHRRDQIIEKDAALCVLIDEM 229

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E2RK91 MED7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 109/231 (47%), Positives = 146/231 (63%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN--------RKDDASV--DGVNPYDRLMCELVDNM 218
             ++ + + T+  +++DSN        +++++    D +   D  +C L+D M
Sbjct:   179 EAGMRVKTEPMDADDSNNCTGQSEQQRENSGHRRDQIIEKDAALCVLIDEM 229

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|O43513 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 109/231 (47%), Positives = 146/231 (63%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN--------RKDDASV--DGVNPYDRLMCELVDNM 218
             ++ + + T+  +++DSN        +++++    D +   D  +C L+D M
Sbjct:   179 EAGMRVKTEPMDADDSNNCTGQNEHQRENSGHRRDQIIEKDAALCVLIDEM 229

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|G3X7Z8 HAVCR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 103/197 (52%), Positives = 132/197 (67%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN 194
             ++ + + T+  +++DSN
Sbjct:   179 EAGMRVKTEPMDADDSN 195

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|E5RIE8 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Homo sapiens (taxid:9606)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 103/197 (52%), Positives = 132/197 (67%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN 194
             ++ + + T+  +++DSN
Sbjct:   179 EAGMRVKTEPMDADDSN 195

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

ZFIN|ZDB-GENE-030131-4823 med7 "mediator complex subunit 7" [Danio rerio (taxid:7955)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 107/227 (47%), Positives = 139/227 (61%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE +R+G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENVRKGLAPKPPPPIRDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD +REL+KLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKRELKKLNMSILVNFLDLLDILIKSPGSIKREEKLEDLKLLFVHM 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVVEMIQGCLSSLPD-DLPLP 178

Query:   178 DSKLLINTDDFNSNDSNRKDDASVDGVNPYDRLMCELVDNMPLTNDG 224
             +S  +        +   + +   VD V     ++ +   N+P+  DG
Sbjct:   179 NSSSMGEAGSAAGSSRLKTEPMDVDDVAGASCMVLQTDKNVPVKKDG 225

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q2F7Z4 MED7 "Mediator of RNA polymerase II transcription subunit 7" [Sus scrofa (taxid:9823)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 108/231 (46%), Positives = 145/231 (62%)

Query:     1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPL 60
             M  PQ QVS+LP PP+QYI  YTDE I+ G APKPP PI DSY MFGNQF  DD IIRPL
Sbjct:     1 MGEPQ-QVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPL 59

Query:    61 ESQGIKRLYPQHFDRRRELRKLNHSXXXXXXXXXXXXXQCPDSPRRTEKVEDXXXXXXXX 120
             ESQGI+RL+P  FD ++ELRKLN S             + P S +R EK+ED        
Sbjct:    60 ESQGIERLHPMQFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHV 119

Query:   121 XXXXNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAIENLPDTDL--- 177
                 NE+RPHQARETLRVMME+Q+RQR ET++RF  HL+RV +++   + +LPD DL   
Sbjct:   120 HHLINEYRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASLPD-DLPHS 178

Query:   178 DSKLLINTDDFNSNDSN--------RKDDASV--DGVNPYDRLMCELVDNM 218
             ++ + +  +  +++DSN        +++++    D +   D  +C L+D M
Sbjct:   179 EAGMRVKAEPMDADDSNNCTGQSDQQRENSGHRRDQIIEKDAALCVLIDEM 229

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4WMG1	MED7_ASPFU	No assigned EC number	0.3216	0.7654	0.6628	yes	N/A
Q7PR68	MED7_ANOGA	No assigned EC number	0.6745	0.9380	0.9680	yes	N/A
Q2UHU3	MED7_ASPOR	No assigned EC number	0.33	0.7522	0.6513	yes	N/A
Q7ZV35	MED7_DANRE	No assigned EC number	0.5394	0.9867	0.9253	yes	N/A
Q9GYV9	MED7_DROME	No assigned EC number	0.6008	0.9292	0.9545	yes	N/A
Q2F7Z4	MED7_PIG	No assigned EC number	0.5367	0.9557	0.9270	yes	N/A
Q9CZB6	MED7_MOUSE	No assigned EC number	0.5304	0.9601	0.9313	yes	N/A
Q6CE96	MED7_YARLI	No assigned EC number	0.3021	0.6769	0.6510	yes	N/A
O43513	MED7_HUMAN	No assigned EC number	0.5367	0.9557	0.9270	yes	N/A
Q3T123	MED7_BOVIN	No assigned EC number	0.5367	0.9557	0.9270	yes	N/A
Q17MI0	MED7_AEDAE	No assigned EC number	0.6415	0.9380	0.9680	N/A	N/A
Q3B8I4	MED7A_XENLA	No assigned EC number	0.5327	0.9557	0.9473	N/A	N/A
Q5BJ48	MED7_XENTR	No assigned EC number	0.5304	0.9557	0.9432	yes	N/A
Q9LZD7	MED7B_ARATH	No assigned EC number	0.3846	0.6106	0.8214	yes	N/A
Q95Q17	MED7_CAEEL	No assigned EC number	0.3790	0.6681	0.6015	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
pfam05983	161	pfam05983, Med7, MED7 protein	5e-57

>gnl|CDD|218839 pfam05983, Med7, MED7 protein

 Score =  177 bits (452), Expect = 5e-57
 Identities = 73/164 (44%), Positives = 104/164 (63%), Gaps = 7/164 (4%)

Query: 7   QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIK 66
           Q+SSL  PP  Y   +TDE +     P PP P   SY +FG  ++ +D  +  LESQGI+
Sbjct: 1   QISSLYPPPPPYYKLFTDENLELRFLPPPPPPTEGSYRVFGETYSLED-KLPSLESQGIE 59

Query: 67  RLYPQ----HFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHH 122
           +LYP       DR+ EL+KLN SLL+NFL+L+ +LV  P+   +  K+ED+ LLFI+ HH
Sbjct: 60  QLYPTSCDASEDRKEELKKLNKSLLLNFLELLGILVINPEQYEK--KIEDLRLLFINAHH 117

Query: 123 LLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166
           LLNE+RPHQARE+L ++ME Q  ++ E  +     L+ V ++L 
Sbjct: 118 LLNEYRPHQARESLIMLMEEQLDEKREEIEAIRKVLEEVREVLE 161

This family consists of several eukaryotic proteins which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multi-step process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG0570|consensus	223		100.0
PF05983	162	Med7: MED7 protein; InterPro: IPR009244 The Mediat	100.0
KOG2391|consensus	365		82.13
PF10018	188	Med4: Vitamin-D-receptor interacting Mediator subu	80.36

>KOG0570|consensus

Probab=100.00  E-value=1.7e-64  Score=432.09  Aligned_cols=170  Identities=49%  Similarity=0.895  Sum_probs=162.8

Q ss_pred             CCCcccccCCCCCCchHhHhhcChhhhhCCCCCCCCCCccccccccCcccccCCCcCCCCcccCccccCC--CCchhHHH
Q psy17466          1 MSAPQEQVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYP--QHFDRRRE   78 (226)
Q Consensus         1 M~~~~~~vss~ppPPp~y~k~ft~en~~~~~~p~PP~P~~g~y~~FG~~~~~~d~~ip~Le~~gi~qLYp--~~~D~k~E   78 (226)
                      |..+.+++|+|||||| |||+||++|+.++.+|+||+|+.|+|.|||+.|..+| +||||+++||+|||+  .++|+|.|
T Consensus         1 m~~~~q~~S~~PpPPp-Y~k~yt~~ni~~~sAP~pP~p~~~tY~~FG~~~~~dd-vip~Le~~Gv~qLykkd~~~d~K~E   78 (223)
T KOG0570|consen    1 MGFGPQTVSAYPPPPP-YYKLYTDENINKGSAPPPPPPILGTYKMFGEEYREDD-VIPPLEEQGVPQLYKKDNNYDYKKE   78 (223)
T ss_pred             CCCCcccccCCCcCCh-HHHHhhhccccCCCCCcccCCCccchhhhccccchhc-cccChhhcChHhhCcccccccHHHH
Confidence            6677777888888876 9999999999999999999999999999999999888 899999999999999  68999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCChHHHhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466         79 LRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHL  158 (226)
Q Consensus        79 LkkL~~SLL~nfLeLl~~L~~~P~~~~~~~ki~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~~~ir~~~  158 (226)
                      |+|||+||++|||||+|+|+++|+.  |++||++|++||+|||||||+|||||||||||+|||+|+++|++++++|++++
T Consensus        79 LRkLnrslllnfleL~~ILi~~P~~--~e~Kvedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~  156 (223)
T KOG0570|consen   79 LRKLNRSLLLNFLELLDILIRAPDM--REEKVEDIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHL  156 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999984  79999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy17466        159 DRVNQILNQAIENLPD  174 (226)
Q Consensus       159 d~~~e~L~~~l~~l~~  174 (226)
                      .++.++|..++.+|..
T Consensus       157 ~~~~e~l~d~~~tL~~  172 (223)
T KOG0570|consen  157 RQVREVLDDQFQTLRG  172 (223)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            9999999999999984

>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=1.8e-61  Score=405.06  Aligned_cols=156  Identities=47%  Similarity=0.801  Sum_probs=104.7

Q ss_pred             ccCCCCCCchHhHhhcChhhhhCCCCCCCCCCccccccccCcccccCCCcCCCCcccCccccCCCC------chhHHHHH
Q psy17466          7 QVSSLPLPPVQYINNYTDELIRRGRAPKPPLPIHDSYSMFGNQFNADDTIIRPLESQGIKRLYPQH------FDRRRELR   80 (226)
Q Consensus         7 ~vss~ppPPp~y~k~ft~en~~~~~~p~PP~P~~g~y~~FG~~~~~~d~~ip~Le~~gi~qLYp~~------~D~k~ELk   80 (226)
                      ||||+|||||+|||+||++|. ....+|||+|.+|+|+|||+.|++++ .+|+|+++||+||||..      .|++.||+
T Consensus         1 ~~~s~fPpPP~~yk~yt~~n~-l~~~~pPp~P~~~~y~~FG~~~~~~~-~~p~L~~~gi~qLy~~~~~~~~~~d~~~eLk   78 (162)
T PF05983_consen    1 QISSLFPPPPPFYKLYTDENE-LRFLPPPPPPIDGEYRVFGETWSTED-KLPSLESQGIRQLYPPDDDPSPSVDRKKELK   78 (162)
T ss_dssp             -----S----GGGGG--HHHG-GGGGS-----SSGGGSTS-------------------------------HHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHcCChhh-ccCCCCcccCCCCcceeCCCEeecCC-CCCCchhccccccCCCccccCCCchHHHHHH
Confidence            466777777789999999983 33345666778999999999999999 89999999999999998      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCChHHHhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466         81 KLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDR  160 (226)
Q Consensus        81 kL~~SLL~nfLeLl~~L~~~P~~~~~~~ki~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~~~ir~~~d~  160 (226)
                      ||++|||+|||+|+|+|+.+|+++  ++||+||++||+|||||||+||||||||||++||++|+++|++++++||++|++
T Consensus        79 kL~~sll~nfleLl~~l~~~P~~~--~~ki~~i~~L~~NmhhllNeyRPhQARetLi~~me~Ql~~kr~~i~~i~~~~~~  156 (162)
T PF05983_consen   79 KLNKSLLLNFLELLDILSKNPSQY--ERKIEDIRLLFINMHHLLNEYRPHQARETLIMMMEEQLEEKREEIEEIRKVCEK  156 (162)
T ss_dssp             HHHHHHHHHHHHHTTSS---CCCH--HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999985  579999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy17466        161 VNQILN  166 (226)
Q Consensus       161 ~~e~L~  166 (226)
                      |+++|+
T Consensus       157 ~~~~le  162 (162)
T PF05983_consen  157 AREVLE  162 (162)
T ss_dssp             HHHHH-
T ss_pred             HHHHhC
Confidence            999985

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.

>KOG2391|consensus

Probab=82.13  E-value=16  Score=34.86  Aligned_cols=32  Identities=16%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy17466        144 RRQRNETSQRFHVHLDRVNQILNQAIENLPDT  175 (226)
Q Consensus       144 i~~r~e~~~~ir~~~d~~~e~L~~~l~~l~~~  175 (226)
                      ++++.|++....+++++.++.|++.+.+|...
T Consensus       237 lkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n  268 (365)
T KOG2391|consen  237 LKRTEEELNIGKQKLVAMKETLEQQLQSLQKN  268 (365)
T ss_pred             HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            66677777777777777777777777666553

>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=80.36  E-value=16  Score=31.09  Aligned_cols=61  Identities=15%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466        109 KVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQAI  169 (226)
Q Consensus       109 ki~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~~l  169 (226)
                      .+++|...=..+..+|.+++-||.+..-|.-|+.++..+-+.+..+.+.+..++..|...+
T Consensus         3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~   63 (188)
T PF10018_consen    3 LAEDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP   63 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666677888999999999999999999999999999999999999999999999876

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1ykh_A	108	RNA polymerase II mediator complex protein MED7; g	1e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A Length = 108

 Score =  115 bits (290), Expect = 1e-33
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 70  PQHFDRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRP 129
             +  + +ELRKL  SLL+N+L+LI +L   PD   R  KVE+I  + ++IHHLLNE+RP
Sbjct: 13  TNYQYKIQELRKLLKSLLLNYLELIGVLSINPDMYER--KVENIRTILVNIHHLLNEYRP 70

Query: 130 HQARETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166
           HQ+RE+L +++E Q   +    +       +V+  L 
Sbjct: 71  HQSRESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 30/199 (15%), Positives = 54/199 (27%), Gaps = 61/199 (30%)

Query: 34  KPPLPIHDSYSMFGNQFNADDTIIRPLE----------------SQGIKRLYPQHFDRRR 77
           K    I   +    N  N+ +T++  L+                S  IK          R
Sbjct: 179 KMDFKIF--WLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 78  EL---RKLNHSLLVNFLD------LIDLL-VQCP--------------DSPRRTEKV--- 110
            L   +   + LLV  L         +   + C                +   T      
Sbjct: 236 RLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 111 ------EDISL-LFIHIHHLLNEFRPHQARET--LRVMM--ELQRRQRNETSQRF-HVHL 158
                  D    L +       +  P +   T   R+ +  E  R     T   + HV+ 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNC 352

Query: 159 DRVNQILNQAIENLPDTDL 177
           D++  I+  ++  L   + 
Sbjct: 353 DKLTTIIESSLNVLEPAEY 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
1ykh_A	108	RNA polymerase II mediator complex protein MED7; g	100.0
3fbi_A	84	Mediator of RNA polymerase II transcription subuni	99.5
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	87.31
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	85.65

>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.2 PDB: 1yke_A

Probab=100.00  E-value=1.5e-36  Score=238.45  Aligned_cols=88  Identities=42%  Similarity=0.661  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466         77 RELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETSQRFHV  156 (226)
Q Consensus        77 ~ELkkL~~SLL~nfLeLl~~L~~~P~~~~~~~ki~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~~~ir~  156 (226)
                      .|||||++|||+|||+|+|+|+.+|+.  +++||+||++||+|||||||+||||||||||++||++|+++|+++++.+++
T Consensus        20 ~ELkkLn~SlL~nfLeLl~~l~~~P~~--~~~kv~di~~lfiNmHhLlNeyRPhQARetL~~~le~Qi~~kr~e~~~i~~   97 (108)
T 1ykh_A           20 QELRKLLKSLLLNYLELIGVLSINPDM--YERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEIREIEQ   97 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCCCGGG--HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCch--HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999999986  589999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy17466        157 HLDRVNQILN  166 (226)
Q Consensus       157 ~~d~~~e~L~  166 (226)
                      .|++|+++|+
T Consensus        98 ~~~~~~~~L~  107 (108)
T 1ykh_A           98 VCKQVHDKLT  107 (108)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A

Probab=99.50  E-value=2.2e-15  Score=113.43  Aligned_cols=46  Identities=30%  Similarity=0.593  Sum_probs=33.8

Q ss_pred             ccccCCCCCCchHhHhhcChhhhhCCC----------------------C----------CCCCCCccccccccCccc
Q psy17466          5 QEQVSSLPLPPVQYINNYTDELIRRGR----------------------A----------PKPPLPIHDSYSMFGNQF   50 (226)
Q Consensus         5 ~~~vss~ppPPp~y~k~ft~en~~~~~----------------------~----------p~PP~P~~g~y~~FG~~~   50 (226)
                      ...|||+|||||+|||+||++|+++..                      .          .||++|.+|+|++||+.|
T Consensus         7 ~n~isSlfPpPPPf~K~FT~eNl~kl~e~k~~~~~~~~~~~~~~~~~~~~~~lp~eL~~LiPP~~P~~g~yr~FG~~w   84 (84)
T 3fbi_A            7 GNEVSSLYPPPPPYVKFFTQSNLEKLPKYKEKKAASAKQTAPNNSNGGSEEEITCALDYLIPPPMPKNQQYRAFGSIW   84 (84)
T ss_dssp             -----CCSCCCCGGGGGCCHHHHHHHHHHHHHHHC---------------CCCCSGGGGGSCCCCCSSGGGSCSCCCC
T ss_pred             ccccccCCCCCCchhhhcCHHHHHHHHHHHHHhcccccccccccccccccCCCCHHHhccCCCCCCCCCCeeecCccC
Confidence            347888888888899999999998720                      0          266688999999999987

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=87.31  E-value=0.5  Score=34.22  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466        130 HQARETLRVMMELQRRQRNETSQRFHVHLDRVNQIL  165 (226)
Q Consensus       130 hQAREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L  165 (226)
                      -|+++.+|.-++.++.++.+++..++..+|+-+.++
T Consensus        35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl   70 (72)
T 3nmd_A           35 LRQRDALIDELELELDQKDELIQMLQNELDKYRSVI   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            478899999999999999999999999999876544

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=85.65  E-value=1.3  Score=31.68  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17466        131 QARETLRVMMELQRRQRNETSQRFHVHLDRVNQILNQ  167 (226)
Q Consensus       131 QAREtLi~mme~Qi~~r~e~~~~ir~~~d~~~e~L~~  167 (226)
                      ++++.+|.-||..++++.++|+.+|.++++.+.++..
T Consensus        21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~~   57 (67)
T 1zxa_A           21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLPV   57 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5789999999999999999999999999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1ykha1	95	a.252.1.2 (A:111-205) RNA polymerase II mediator c	6e-33

>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 95

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: MED7 hinge region
domain: RNA polymerase II mediator complex protein MED7
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (282), Expect = 6e-33
 Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 74  DRRRELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQAR 133
            + +ELRKL  SLL+N+L+LI +L   PD   R  KVE+I  + ++IHHLLNE+RPHQ+R
Sbjct: 4   YKIQELRKLLKSLLLNYLELIGVLSINPDMYER--KVENIRTILVNIHHLLNEYRPHQSR 61

Query: 134 ETLRVMMELQRRQRNETSQRFHVHLDRVNQILN 166
           E+L +++E Q   +    +       +V+  L 
Sbjct: 62  ESLIMLLEEQLEYKRGEIREIEQVCKQVHDKLT 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1ykha1	95	RNA polymerase II mediator complex protein MED7 {B	100.0

>d1ykha1 a.252.1.2 (A:111-205) RNA polymerase II mediator complex protein MED7 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Mediator hinge subcomplex-like
superfamily: Mediator hinge subcomplex-like
family: MED7 hinge region
domain: RNA polymerase II mediator complex protein MED7
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-38  Score=238.82  Aligned_cols=92  Identities=40%  Similarity=0.653  Sum_probs=86.7

Q ss_pred             chhH-HHHHHHHHHHHHHHHHHHHHHhhCCCChHHHhHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Q psy17466         73 FDRR-RELRKLNHSLLVNFLDLIDLLVQCPDSPRRTEKVEDISLLFIHIHHLLNEFRPHQARETLRVMMELQRRQRNETS  151 (226)
Q Consensus        73 ~D~k-~ELkkL~~SLL~nfLeLl~~L~~~P~~~~~~~ki~di~~L~iNmHHLLNeyRPhQAREtLi~mme~Qi~~r~e~~  151 (226)
                      +|.| .|||||++|+|+|||||+|+|+.+|+++  +.|++||++||+|||||||+||||||||||++||++|+++|++++
T Consensus         2 ~~~k~~ELkkln~sll~nfleLl~~l~~~P~~~--~~kvedl~~LfiN~HhllNeyRPhQAResLi~lme~Ql~~kr~~~   79 (95)
T d1ykha1           2 YQYKIQELRKLLKSLLLNYLELIGVLSINPDMY--ERKVENIRTILVNIHHLLNEYRPHQSRESLIMLLEEQLEYKRGEI   79 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCCGGGH--HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhCccch--HhhHHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHH
Confidence            4555 8999999999999999999999999875  679999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy17466        152 QRFHVHLDRVNQILN  166 (226)
Q Consensus       152 ~~ir~~~d~~~e~L~  166 (226)
                      +.+++.|+++++.|.
T Consensus        80 ~~i~~~~~~~~~~L~   94 (95)
T d1ykha1          80 REIEQVCKQVHDKLT   94 (95)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988763