Psyllid ID: psy17468

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54

MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQEHAM

ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccHHHHHHHccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHccccc

cccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccHHHHccccccccccHHHccHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHHccccccccHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccc

MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSadqmrndqklslvgnpgqllkpartermsceylsqESLDRWIIFGFMlchqplsqepVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGllfsdqpgllgpkALLIFIGLSYARDEVYWLLrhndnppvqkgksksaedlvDRQLPELEMKFIAegaipfnaeefsdVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVqdfyqhspvgdpkIVNEMASAAGLLCTVDPALATALasdktdldeDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLlrlgqdpdeestrhRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQEHAM

MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMrndqklslvgnpgqllkparTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSkaalehrekRKFLRTALKELGLlfsdqpgllGPKALLIFIGLSYARDEVYWLLRHndnppvqkgksksaEDLVDRQLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQEHAM

************EFIPHAKLLFQALMSLRAIYSYRNVS***************************MSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRH************************LEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALT********************SVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAV*******

MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFD***********VKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHN****************VDRQLPELEMKFIAE*****NAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALATAL************VLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLL**************DSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSK*****

MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNP***********DLVDRQLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLLRL***********RDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHA********

MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWIIFGFMLCHQPLSQEPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREKRKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNPP******KSAEDLVDRQLPELEMKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQE***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		538	2.2.26 [Sep-21-2011]
P55162		1126	Membrane-associated prote	yes	N/A	0.561	0.268	0.702	1e-125
Q640K3		1128	Nck-associated protein 1	N/A	N/A	0.553	0.264	0.609	1e-100
B0S6R1		1128	Nck-associated protein 1	yes	N/A	0.553	0.264	0.603	6e-99
P55161		1128	Nck-associated protein 1	yes	N/A	0.553	0.264	0.596	1e-98
Q9Y2A7		1128	Nck-associated protein 1	yes	N/A	0.553	0.264	0.596	2e-98
P28660		1128	Nck-associated protein 1	yes	N/A	0.553	0.264	0.596	2e-98
A7RU46		1120	Nck-associated protein 1	N/A	N/A	0.559	0.268	0.521	1e-82
P55160		1127	Nck-associated protein 1-	no	N/A	0.555	0.265	0.496	3e-80
P55163		1141	Membrane-associated prote	yes	N/A	0.537	0.253	0.398	6e-57
Q869Q3		1160	Nck-associated protein 1	yes	N/A	0.565	0.262	0.265	6e-26

>sp\|P55162\|HEM_DROME Membrane-associated protein Hem OS=Drosophila melanogaster GN=Hem PE=2 SV=1	Back alignment and function desciption

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/303 (70%), Positives = 256/303 (84%), Gaps = 1/303 (0%)

Query: 237  EGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLL 296
            EG +PFN +EFSD+NELRALA+L+GPYG+K LNETLMWHIA+QVQELK LV+ NKEVL+ 
Sbjct: 820  EGWVPFNPQEFSDLNELRALAELVGPYGIKTLNETLMWHIANQVQELKSLVSTNKEVLIT 879

Query: 297  LRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSV 356
            LRT FDKPE+MKEQ KRL +V+ VLQRMTIIGVI+ F+ +   AL +VL+ R+PFLL+SV
Sbjct: 880  LRTSFDKPEVMKEQFKRLQDVDRVLQRMTIIGVIICFRNLVHEALVDVLDKRIPFLLSSV 939

Query: 357  QDFYQHSPVGDP-KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVA 415
            +DF +H P GD  ++ +EMASAAGLLC VDP LAT L S K + DE EH+ ACLLMVFVA
Sbjct: 940  KDFQEHLPGGDQIRVASEMASAAGLLCKVDPTLATTLKSKKPEFDEGEHLTACLLMVFVA 999

Query: 416  VCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTS 475
            V IPKLARNE  FY A+++GHSNN HCMA+AIN+IF ALFT+CGQ D+EDRMKEFLAL S
Sbjct: 1000 VSIPKLARNENSFYRATIDGHSNNTHCMAAAINNIFGALFTICGQSDMEDRMKEFLALAS 1059

Query: 476  SSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQE 535
            SSLLRLGQ+ D+E+TR+R+S+YLLL +IV++SPFLTMDLLESCFPY LIRNAYH V KQE
Sbjct: 1060 SSLLRLGQESDKEATRNRESIYLLLDEIVKQSPFLTMDLLESCFPYVLIRNAYHGVYKQE 1119

Query: 536  HAM 538
              +
Sbjct: 1120 QIL 1122

Plays a role during growth of the oocyte.
Drosophila melanogaster (taxid: 7227)

>sp\|Q640K3\|NCKP1_XENLA Nck-associated protein 1 OS=Xenopus laevis GN=nckap1 PE=2 SV=1	Back alignment and function description

>sp\|B0S6R1\|NCKP1_DANRE Nck-associated protein 1 OS=Danio rerio GN=nckap1 PE=3 SV=1	Back alignment and function description

>sp\|P55161\|NCKP1_RAT Nck-associated protein 1 OS=Rattus norvegicus GN=Nckap1 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y2A7\|NCKP1_HUMAN Nck-associated protein 1 OS=Homo sapiens GN=NCKAP1 PE=1 SV=1	Back alignment and function description

>sp\|P28660\|NCKP1_MOUSE Nck-associated protein 1 OS=Mus musculus GN=Nckap1 PE=1 SV=2	Back alignment and function description

>sp\|A7RU46\|NAPA_NEMVE Nck-associated protein 1 homolog OS=Nematostella vectensis GN=napA PE=3 SV=1	Back alignment and function description

>sp\|P55160\|NCKPL_HUMAN Nck-associated protein 1-like OS=Homo sapiens GN=NCKAP1L PE=1 SV=3	Back alignment and function description

>sp\|P55163\|GEX3_CAEEL Membrane-associated protein gex-3 OS=Caenorhabditis elegans GN=gex-3 PE=1 SV=2	Back alignment and function description

>sp\|Q869Q3\|NAPA_DICDI Nck-associated protein 1 homolog OS=Dictyostelium discoideum GN=napA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		538
156548662		1123	PREDICTED: membrane-associated protein H	0.561	0.268	0.763	1e-132
350403919		1122	PREDICTED: membrane-associated protein H	0.561	0.269	0.755	1e-131
66524904		1123	PREDICTED: membrane-associated protein H	0.561	0.268	0.752	1e-131
383862515		1122	PREDICTED: membrane-associated protein H	0.561	0.269	0.752	1e-131
242024169		1120	membrane-associated protein Hem, putativ	0.559	0.268	0.760	1e-131
307175866		1122	Membrane-associated protein Hem [Campono	0.561	0.269	0.749	1e-131
307191997		1122	Membrane-associated protein Hem [Harpegn	0.561	0.269	0.752	1e-131
332017367		1122	Membrane-associated protein Hem [Acromyr	0.561	0.269	0.745	1e-130
322786599		1121	hypothetical protein SINV_07486 [Solenop	0.561	0.269	0.745	1e-130
340725220		1122	PREDICTED: membrane-associated protein H	0.561	0.269	0.752	1e-130

>gi\|156548662\|ref\|XP_001602104.1\| PREDICTED: membrane-associated protein Hem-like [Nasonia vitripennis]	Back alignment and taxonomy information

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/304 (76%), Positives = 268/304 (88%), Gaps = 2/304 (0%)

Query: 236  AEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLL 295
             EG+IPFNAEEFSD+NELRALA+LIGPYGMK+LNETLMWHI+SQVQELKKLVA+NK+VL+
Sbjct: 818  VEGSIPFNAEEFSDINELRALAELIGPYGMKMLNETLMWHISSQVQELKKLVASNKDVLI 877

Query: 296  LLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNS 355
             LRT+FDKPE+MKEQ K+L +V+NVLQR+TIIGVIL+F+++AQ AL +VLE R+PFLL+S
Sbjct: 878  SLRTNFDKPEVMKEQFKKLQHVDNVLQRVTIIGVILSFRQLAQNALVDVLEERIPFLLSS 937

Query: 356  VQDFYQHSPVGDP-KIVNEMASAAGLLCTVDPALATALASDKTDL-DEDEHVLACLLMVF 413
            + DF  H P GDP ++V+EM SAAGL C VDP L TAL S K +L DEDEH+L CLLMVF
Sbjct: 938  ILDFRHHLPAGDPMRVVSEMTSAAGLSCKVDPTLTTALKSQKAELVDEDEHILVCLLMVF 997

Query: 414  VAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLAL 473
            VAV IPKLARNE  FY ASLEGHSNNIHCMA+AIN++F ALFT CGQ D+EDRMKEFLAL
Sbjct: 998  VAVSIPKLARNENSFYRASLEGHSNNIHCMATAINNVFGALFTSCGQNDIEDRMKEFLAL 1057

Query: 474  TSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSK 533
             SSSLLRLGQ+ D+E+TR+R+SVYLLL QIVQESPFLTMDLLESCFPYALIRNAYH V K
Sbjct: 1058 ASSSLLRLGQEADKEATRNRESVYLLLDQIVQESPFLTMDLLESCFPYALIRNAYHDVYK 1117

Query: 534  QEHA 537
             EHA
Sbjct: 1118 LEHA 1121

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|350403919\|ref\|XP_003486951.1\| PREDICTED: membrane-associated protein Hem-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|66524904\|ref\|XP_624331.1\| PREDICTED: membrane-associated protein Hem [Apis mellifera]	Back alignment and taxonomy information

>gi\|383862515\|ref\|XP_003706729.1\| PREDICTED: membrane-associated protein Hem-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|242024169\|ref\|XP_002432502.1\| membrane-associated protein Hem, putative [Pediculus humanus corporis] gi\|212517940\|gb\|EEB19764.1\| membrane-associated protein Hem, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307175866\|gb\|EFN65681.1\| Membrane-associated protein Hem [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|307191997\|gb\|EFN75387.1\| Membrane-associated protein Hem [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|332017367\|gb\|EGI58109.1\| Membrane-associated protein Hem [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|322786599\|gb\|EFZ12994.1\| hypothetical protein SINV_07486 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|340725220\|ref\|XP_003400971.1\| PREDICTED: membrane-associated protein Hem-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		538
FB\|FBgn0011771		1126	Hem "HEM-protein" [Drosophila	0.561	0.268	0.702	5.2e-199
UNIPROTKB\|E1C6G9		1128	NCKAP1 "Uncharacterized protei	0.552	0.263	0.605	2.6e-158
ZFIN\|ZDB-GENE-030131-4426		1128	nckap1 "NCK-associated protein	0.552	0.263	0.605	1.1e-157
MGI\|MGI:1355333		1128	Nckap1 "NCK-associated protein	0.552	0.263	0.598	1.4e-157
RGD\|61939		1128	Nckap1 "NCK-associated protein	0.552	0.263	0.598	1.4e-157
UNIPROTKB\|Q9Y2A7		1128	NCKAP1 "Nck-associated protein	0.552	0.263	0.598	3.8e-157
UNIPROTKB\|F1MPZ9		1093	NCKAP1 "Uncharacterized protei	0.552	0.271	0.598	4.3e-156
UNIPROTKB\|P55160		1127	NCKAP1L "Nck-associated protei	0.555	0.265	0.496	1.1e-131
UNIPROTKB\|E1B876		1134	NCKAP1L "Uncharacterized prote	0.555	0.263	0.506	9.8e-131
RGD\|1312032		1139	Nckap1l "NCK associated protei	0.550	0.259	0.495	2.5e-127

FB\|FBgn0011771 Hem "HEM-protein" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1116 (397.9 bits), Expect = 5.2e-199, Sum P(2) = 5.2e-199
 Identities = 213/303 (70%), Positives = 256/303 (84%)

Query:   237 EGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLL 296
             EG +PFN +EFSD+NELRALA+L+GPYG+K LNETLMWHIA+QVQELK LV+ NKEVL+ 
Sbjct:   820 EGWVPFNPQEFSDLNELRALAELVGPYGIKTLNETLMWHIANQVQELKSLVSTNKEVLIT 879

Query:   297 LRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSV 356
             LRT FDKPE+MKEQ KRL +V+ VLQRMTIIGVI+ F+ +   AL +VL+ R+PFLL+SV
Sbjct:   880 LRTSFDKPEVMKEQFKRLQDVDRVLQRMTIIGVIICFRNLVHEALVDVLDKRIPFLLSSV 939

Query:   357 QDFYQHSPVGDP-KIVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVA 415
             +DF +H P GD  ++ +EMASAAGLLC VDP LAT L S K + DE EH+ ACLLMVFVA
Sbjct:   940 KDFQEHLPGGDQIRVASEMASAAGLLCKVDPTLATTLKSKKPEFDEGEHLTACLLMVFVA 999

Query:   416 VCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTS 475
             V IPKLARNE  FY A+++GHSNN HCMA+AIN+IF ALFT+CGQ D+EDRMKEFLAL S
Sbjct:  1000 VSIPKLARNENSFYRATIDGHSNNTHCMAAAINNIFGALFTICGQSDMEDRMKEFLALAS 1059

Query:   476 SSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQE 535
             SSLLRLGQ+ D+E+TR+R+S+YLLL +IV++SPFLTMDLLESCFPY LIRNAYH V KQE
Sbjct:  1060 SSLLRLGQESDKEATRNRESIYLLLDEIVKQSPFLTMDLLESCFPYVLIRNAYHGVYKQE 1119

Query:   536 HAM 538
               +
Sbjct:  1120 QIL 1122

GO:0007417 "central nervous system development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0001555 "oocyte growth" evidence=NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0030031 "cell projection assembly" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0031209 "SCAR complex" evidence=IPI

UNIPROTKB\|E1C6G9 NCKAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-4426 nckap1 "NCK-associated protein 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1355333 Nckap1 "NCK-associated protein 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|61939 Nckap1 "NCK-associated protein 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y2A7 NCKAP1 "Nck-associated protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MPZ9 NCKAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P55160 NCKAP1L "Nck-associated protein 1-like" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B876 NCKAP1L "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1312032 Nckap1l "NCK associated protein 1 like" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0S6R1	NCKP1_DANRE	No assigned EC number	0.6032	0.5539	0.2641	yes	N/A
P28660	NCKP1_MOUSE	No assigned EC number	0.5967	0.5539	0.2641	yes	N/A
Q9Y2A7	NCKP1_HUMAN	No assigned EC number	0.5967	0.5539	0.2641	yes	N/A
P55162	HEM_DROME	No assigned EC number	0.7029	0.5613	0.2682	yes	N/A
P55161	NCKP1_RAT	No assigned EC number	0.5967	0.5539	0.2641	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		538
pfam09735		1118	pfam09735, Nckap1, Membrane-associated apoptosis p	1e-135
pfam09735		1118	pfam09735, Nckap1, Membrane-associated apoptosis p	1e-94

>gnl\|CDD\|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein	Back alignment and domain information

 Score =  419 bits (1079), Expect = e-135
 Identities = 181/301 (60%), Positives = 228/301 (75%), Gaps = 4/301 (1%)

Query: 240  IPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRT 299
            + FNAEEFSD++ELRAL +L+GPYGMK L+E+LMWHIASQV ELKKLV  NK+VL+ LR+
Sbjct: 818  LGFNAEEFSDISELRALVELLGPYGMKFLSESLMWHIASQVNELKKLVVENKDVLVQLRS 877

Query: 300  HFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDF 359
             FDKP+ M    KRL + +NVL+RM IIGVIL+F+ +AQ AL+ VLES VPFL++S++D 
Sbjct: 878  SFDKPDQMAALLKRLSDADNVLKRMIIIGVILSFRDLAQEALRAVLESHVPFLMSSIEDL 937

Query: 360  YQHSPVGDPK----IVNEMASAAGLLCTVDPALATALASDKTDLDEDEHVLACLLMVFVA 415
             +H P    K     + EMASAAG+ C VDPAL  AL + K +  E+++  +CLL+VFVA
Sbjct: 938  KEHVPEVTDKKVILRIFEMASAAGVPCDVDPALVNALLAQKGENSEEDYKNSCLLLVFVA 997

Query: 416  VCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFLALTS 475
            V +P LA  +  FY   +EGHSNNIHC+A AIN I +ALFTL  + ++E RMKEFLAL S
Sbjct: 998  VSLPTLAMWDTSFYNPEIEGHSNNIHCLAKAINAISAALFTLTAEANIESRMKEFLALAS 1057

Query: 476  SSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQE 535
            SSLL LGQ+ D+   R+R+SVYLLL QIV+ESPFLTMD+LESCFPY L+RNAYH V K  
Sbjct: 1058 SSLLDLGQETDKSRLRNRESVYLLLDQIVEESPFLTMDVLESCFPYVLLRNAYHQVYKAS 1117

Query: 536  H 536
             
Sbjct: 1118 L 1118

Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease. It is involved in the regulation of actin polymerisation in the brain as part of a WAVE2 signalling complex. Length = 1118

>gnl\|CDD\|204301 pfam09735, Nckap1, Membrane-associated apoptosis protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		538
PF09735		1116	Nckap1: Membrane-associated apoptosis protein; Int	100.0
KOG1917\|consensus		1125		100.0
KOG1917\|consensus		1125		99.24
PF10266		1081	Strumpellin: Hereditary spastic paraplegia protein	85.71

>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling	Back alignment and domain information

Probab=100.00  E-value=1.1e-173  Score=1483.26  Aligned_cols=534  Identities=58%  Similarity=0.975  Sum_probs=462.9

Q ss_pred             CCCccchhhhhhhhchhhHHHHHHHHHHHHHHhccCcchHhhhhcCccccCCCCCcccCccccccccccccchhhhhhhh
Q psy17468          1 MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWI   80 (538)
Q Consensus         1 ~dyd~PlKkL~eef~p~~~~i~~aL~Sl~~~y~rr~~~a~~wR~~~~Lsl~~~P~~~l~pa~sd~~~cE~ls~e~m~~Wi   80 (538)
                      +|||+|+|||+|||+||+++|++||+||+++|+|||.+|++||++|+||++++|++|++|+++|+|+|||+|+++|+|||
T Consensus       174 ~~y~~P~kkL~eef~p~~~~i~~aL~Sl~~~~~rr~~~a~~wR~~~~lsl~~~p~~il~p~~~~~~~~e~lsl~~~~~Wi  253 (1116)
T PF09735_consen  174 LDYDNPLKKLQEEFQPHSRRIGSALMSLRPIYPRRNLTADQWRSAQLLSLISPPADILTPAQTDTMACEYLSLEVMERWI  253 (1116)
T ss_dssp             HHTSSHHHHHHHHTTTTHHHHHHHHHGGGGTHHHHS--HHHHHHTTTT-SSSSGGGTTS----TTHHHHHS-HHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcCcccCCCChhhccCCccCcchhhhhhhhhhHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeeccCCCCCC-chhHHHHHHHhcCCceEEeechhhHhhHHHHHHHHhhhhhcccchhHHhhHHHHHHHHhhHHHHHH
Q psy17468         81 IFGFMLCHQPLSQ-EPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREK  159 (538)
Q Consensus        81 i~g~L~cp~~L~~-~~~~~lw~~aL~~~~vl~LfRdev~~iH~~~e~~~~s~K~y~Kr~~~vkE~~~~A~~~~~~~HreR  159 (538)
                      +||||+||++|.+ +++++||+.||++|||||||||||++||+++|++|+|+|+||||+++||||+++|+++||.+||||
T Consensus       254 i~g~L~cp~~L~~~~~~~~l~~~aL~~~~~i~LfRde~l~iH~~~~~~~~~~k~~~Kr~~~vkE~~~~A~~~~~~~HreR  333 (1116)
T PF09735_consen  254 IFGFLVCPQELLQQPSILDLWKLALQDGLVITLFRDEVLNIHKEIETFFESKKGYSKRLSEVKECAEQALQNAGDLHRER  333 (1116)
T ss_dssp             HHHHHHTTHHHHH-HHHHHHHHHHHTT-SEEEEETTEEEEHHHHHHHHHTT-GGGTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeeechhhhcCChHHHHHHHHHhccCcEEEEeccchhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcchhhHHH
Confidence            9999999999988 777799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCcchHHHHHHhhhhhhhhhHHHhhcCCCCCCCCCCCCCccccccCcchHHHH-------
Q psy17468        160 RKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPELEM-------  232 (538)
Q Consensus       160 R~~LR~aLkel~~ll~DqPgLLgPK~l~vf~aLs~aRdEV~Wl~rH~~~~p~~~k~k~~~ed~~D~~l~eLLf-------  232 (538)
                      |+|||++||||+++|+|||||||||+++||||||||||||+|||||++++|++||||.+++|++|++||||||       
T Consensus       334 R~~Lr~~Lkel~~l~~dqPgLLgPK~~~v~~aLs~ArdEV~W~~rH~~~~p~~~~k~~~~~d~~D~~i~eLL~~m~eLr~  413 (1116)
T PF09735_consen  334 RRYLRQALKELVLLLTDQPGLLGPKALMVFAALSFARDEVLWLFRHNDNPPPKKKKKKTDEDYIDRQIPELLFYMEELRS  413 (1116)
T ss_dssp             HHHHHHHHHHHHHHHHH-GGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHS-------SSTTTT--TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhCccccchhHHHHHHHHHHHHHHHHHHHHccCCCCccccccCCccccccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998877777899999999999999       


Q ss_pred             ---H----------------------------------------------------------------------------
Q psy17468        233 ---K----------------------------------------------------------------------------  233 (538)
Q Consensus       233 ---k----------------------------------------------------------------------------  233 (538)
                         |                                                                            
T Consensus       414 Lv~k~~~viqrYy~~yl~~~Da~~L~~~i~~~~~~~eee~~ilss~~~~l~~l~~~~~e~~~~~Df~~lRlDW~RLqa~~  493 (1116)
T PF09735_consen  414 LVRKYSQVIQRYYVQYLSGYDALVLNELIQNLSVCPEEESVILSSFVQTLSSLSVKQVENGEKFDFSGLRLDWFRLQAYT  493 (1116)
T ss_dssp             HHHHSHHHHHHHHHHHHHHTHHHHHHHHHTT-S---HHHHHHHHHHHHHHHT--HHHHHTT-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhCCccccccCCcCchHHHHHHHHHHHHHH
Confidence               0                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17468        234 --------------------------------------------------------------------------------  233 (538)
Q Consensus       234 --------------------------------------------------------------------------------  233 (538)
                                                                                                      
T Consensus       494 S~~~s~l~L~~~~~L~~~mN~i~fHsk~VD~lde~L~etSdLs~lcfY~~~fe~~F~~~l~~psq~ry~iaf~~icshF~  573 (1116)
T PF09735_consen  494 SSSRSPLQLRENEKLASLMNTIVFHSKMVDSLDELLRETSDLSILCFYPRFFEKMFRQCLEGPSQPRYSIAFPLICSHFP  573 (1116)
T ss_dssp             HSTT-SS-GGG-HHHHHHHHHHHHHHHHHH-HHHHHHHHH--GGGGG-HHHHHHHHHHHHHSHHHHGGGGHHHHHGGGGG
T ss_pred             hhcccccCccchHHHHHHHHHHHHHHhhhchHHHHHHHhcchhheeehhHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17468        234 --------------------------------------------------------------------------------  233 (538)
Q Consensus       234 --------------------------------------------------------------------------------  233 (538)
                                                                                                      
T Consensus       574 ~~~h~lcPEE~~~i~~~sl~~a~~fLeeiak~~~~~i~~l~~e~~~L~~qLlP~~aA~~~~~~~~~k~~k~~~k~~~~~~  653 (1116)
T PF09735_consen  574 NCLHELCPEEREHIGERSLSLANSFLEEIAKQTSNVINQLCSEQCSLEDQLLPKHAARLISQARNKKKKKQKNKKGEPER  653 (1116)
T ss_dssp             GG--TT-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGHHHHHHHTT---------------
T ss_pred             hhCCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccCcCCCCCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17468        234 --------------------------------------------------------------------------------  233 (538)
Q Consensus       234 --------------------------------------------------------------------------------  233 (538)
                                                                                                      
T Consensus       654 ~~PG~ES~r~~r~~~t~ld~l~~~L~eLc~aln~~~~I~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~~~~~~~~i~RPS  733 (1116)
T PF09735_consen  654 VKPGAESYRKNRENLTMLDKLHQALTELCSALNHFPSIVVFDHVFVPREYLREHLENRFRRALVSMVMYNPDDQEIARPS  733 (1116)
T ss_dssp             --TTGGG--S-TTS--HHHHHHHHHHHHHHHHTS-S-EEETTEEE-HHHHHHHHHHHHHHHHHHHHT--BTTTTB---HH
T ss_pred             CCCchhccCCCchhhhhHHHHHHHHHHHHHHHhcCCCeEEEeeEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------------Hhhc
Q psy17468        234 ----------------------------------------------------------------------------FIAE  237 (538)
Q Consensus       234 ----------------------------------------------------------------------------Fv~~  237 (538)
                                                                                                  ||+.
T Consensus       734 ~ll~~l~a~m~vlq~le~~v~iDvt~~~~~vLLqqtq~~d~~g~~ti~~~yt~WYle~llr~~s~~~ivfSp~~~~FvS~  813 (1116)
T PF09735_consen  734 ELLSSLRAYMSVLQSLENYVSIDVTRLFRNVLLQQTQPVDSHGEKTITTLYTNWYLENLLRDASNGGIVFSPSRKCFVSS  813 (1116)
T ss_dssp             HHHHHHHHHHHHHHHGGGTSS--HHHHHHHHHHHTTSSB-TTS-B-HHHHHHHHHHHTHHHHHHTTSEEEETTTTEEEE-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCcccCCcccHHHHHHHHHHHHHHHhccCCcEEeecHHHhhhCC
Confidence                                                                                        4533


Q ss_pred             -C-CcccccccCCCHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHhhhh
Q psy17468        238 -G-AIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRLH  315 (538)
Q Consensus       238 -~-~~~f~AE~ysD~~ELrAL~eLiGPYG~k~L~e~L~~hia~qv~elkklv~~N~d~L~~lr~~f~~p~~m~~~lk~L~  315 (538)
                       + +++|+||+|||++|||||||||||||||+|+++|||||++||+||||+|++|+|+|+++|+|||||++|++++|||+
T Consensus       814 ~~~~~~f~ae~ytD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~elkk~v~~N~d~L~~l~~~~~~~~~~~~~~~~l~  893 (1116)
T PF09735_consen  814 RPEQGPFNAEEYTDLNELRALVELIGPYGVKFLDENLMWHVASQVNELKKLVRQNRDVLEQLRSNFDKPEKMEELLKQLT  893 (1116)
T ss_dssp             SSS---S-THHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-TT-HHHHHHHHTT--
T ss_pred             CCccCCcChHHcCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHhhc
Confidence             3 38999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCchhhhhHHHHhhcCCCCCC----chHHHHHHHhCCCCCCCHHHHHH
Q psy17468        316 NVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDP----KIVNEMASAAGLLCTVDPALATA  391 (538)
Q Consensus       316 ~~e~~l~r~~iiG~iL~FR~l~~eAl~~VL~~~~Pfl~s~I~~~~~~~~~~~~----l~v~~lA~aaGl~~~vD~~Lv~a  391 (538)
                      ++|+|++||||||+||+||+|+|||+++|+++|+|||+|+|+++++|+|+..+    ++|++||++||++|++||+|+++
T Consensus       894 ~~d~vl~r~i~iG~iL~FR~ll~eAl~~Vl~~~~Pfl~s~i~~~~~~~~~~~~~~~~l~v~~lA~~aG~~~~vD~~lv~a  973 (1116)
T PF09735_consen  894 DLDNVLQRMIIIGVILSFRQLLQEALRDVLERRIPFLMSSIEDLKEHIPNGPDIKEFLSVDELASAAGLPCDVDPALVRA  973 (1116)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------SSHHHHHHHHHHTT---SS-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999996555    45999999999999999999999


Q ss_pred             HhccCCCCCchhhHHHHHHHHHHHHHhcccccCCccccccccccccchhhhHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q psy17468        392 LASDKTDLDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKEFL  471 (538)
Q Consensus       392 l~~~~~~~~d~~y~~w~LL~vf~avslp~l~~~~~s~y~~~~~g~~NN~HCla~aIn~l~~a~f~l~g~~~Ie~~mkeFL  471 (538)
                      |++++++ |||+|+.||+||||+|||+|++++|++|+|++++|||+||+||+|+|||+|++|+|+++|++||+++|||||
T Consensus       974 l~~~~~~-~~e~~~~~~lLlvf~avsl~~~~~~~~s~Y~~~~~g~~NN~Hcla~ai~~l~~al~~~~~~~di~~~mkeFl 1052 (1116)
T PF09735_consen  974 LRAQKGD-PDEEYKISWLLLVFLAVSLPTLAMWDSSVYKPELEGFSNNIHCLARAINALAAALFSLSGEADIESRMKEFL 1052 (1116)
T ss_dssp             HT------HHHHHHHHHHHHHHHHHHGGGGGG-GGG-EETTTTEETT-GGGHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred             HHHhCCC-chHhhhhhHHHHHHHHHHhHhccCCCccccccccccccchHHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence            9999997 899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhccCCCCCCcccCCcchhHhhHHHHHhcCCCCchhhhhhhchHHHHHHHHHHhhhhc
Q psy17468        472 ALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQE  535 (538)
Q Consensus       472 ~lASs~lL~l~~e~~k~~~k~r~sv~ilLdqiV~~SpfLt~d~LEscfPY~LlRnaY~~~y~~~  535 (538)
                      ++||++|||+|+|++|+..|+|+|+|||||||||+|||||+|+||+||||+|||||||++|+++
T Consensus      1053 ~laS~~lL~l~~e~~~~~~k~~~sv~i~LD~~v~~Sp~L~~d~LE~~fPY~LiR~aY~~~y~~~ 1116 (1116)
T PF09735_consen 1053 ALASSSLLRLGQETDKSALKSRESVYIFLDQIVEESPFLTRDLLESCFPYALIRNAYHQVYENS 1116 (1116)
T ss_dssp             HHHHHHHHHTTS---TTTTTTHHHHHHHHHHHHHH-TT--HHHHHHHS-HHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhhhccccccccccchhhhHHHHHhcCCCCChHHHHHhCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999975

It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.

>KOG1917\|consensus	Back alignment and domain information

>KOG1917\|consensus	Back alignment and domain information

>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		538
3p8c_B		1128	Structure And Control Of The Actin Regulatory Wave		1e-99

>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex Length = 1128

Back alignment and structure

Iteration: 1

Score = 360 bits (924), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 182/305 (59%), Positives = 238/305 (78%), Gaps = 7/305 (2%) Query: 236 AEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLL 295 E + FNAEE+SD++E+R+L++L+GPYGMK L+E+LMWHI+SQV ELKKLV N +VL Sbjct: 819 TENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLT 878 Query: 296 LLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNS 355 +RT FDKP+ M KRL +V++VL+RMTIIGVIL+F+ +AQ AL++VL +PFL++S Sbjct: 879 QMRTSFDKPDQMAALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSS 938 Query: 356 VQDFYQHSPV-GDPKI---VNEMASAAGLLCTVDPALATALASDKTD--LDEDEHVLACL 409 ++DF H P D K+ V E++SAAGL C +DPAL AL+S K++ E+E+ +ACL Sbjct: 939 IEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACL 998 Query: 410 LMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMKE 469 LMVFVAV +P LA N Y ++EGH NNIHC+A AIN I +ALFT+ +G +EDR+KE Sbjct: 999 LMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTI-HKGSIEDRLKE 1057 Query: 470 FLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYH 529 FLAL SSSLL++GQ+ D+ +TR+R+SVYLLL IVQESPFLTMDLLESCFPY L+RNAYH Sbjct: 1058 FLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLRNAYH 1117 Query: 530 AVSKQ 534 AV KQ Sbjct: 1118 AVYKQ 1122

PyMOL of 3p8c

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		538
3p8c_B		1128	NCK-associated protein 1; actin polymerization, pr	1e-113
3p8c_B		1128	NCK-associated protein 1; actin polymerization, pr	6e-80
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128	Back alignment and structure

 Score =  359 bits (923), Expect = e-113
 Identities = 180/309 (58%), Positives = 236/309 (76%), Gaps = 7/309 (2%)

Query: 232  MKFIAEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANK 291
            +    E  + FNAEE+SD++E+R+L++L+GPYGMK L+E+LMWHI+SQV ELKKLV  N 
Sbjct: 815  VNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENV 874

Query: 292  EVLLLLRTHFDKPEIMKEQSKRLHNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPF 351
            +VL  +RT FDKP+ M    KRL +V++VL+RMTIIGVIL+F+ +AQ AL++VL   +PF
Sbjct: 875  DVLTQMRTSFDKPDQMAALFKRLSSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPF 934

Query: 352  LLNSVQDFYQHSPVGDP----KIVNEMASAAGLLCTVDPALATALASDKTD--LDEDEHV 405
            L++S++DF  H P          V E++SAAGL C +DPAL  AL+S K++    E+E+ 
Sbjct: 935  LVSSIEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVVALSSQKSENISPEEEYK 994

Query: 406  LACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLED 465
            +ACLLMVFVAV +P LA N    Y  ++EGH NNIHC+A AIN I +ALFT+  +G +ED
Sbjct: 995  IACLLMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTIH-KGSIED 1053

Query: 466  RMKEFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIR 525
            R+KEFLAL SSSLL++GQ+ D+ +TR+R+SVYLLL  IVQESPFLTMDLLESCFPY L+R
Sbjct: 1054 RLKEFLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLR 1113

Query: 526  NAYHAVSKQ 534
            NAYHAV KQ
Sbjct: 1114 NAYHAVYKQ 1122

PyMOL of 3p8c

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1128	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		538
3p8c_B		1128	NCK-associated protein 1; actin polymerization, pr	100.0

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=7.4e-180  Score=1520.42  Aligned_cols=532  Identities=57%  Similarity=0.960  Sum_probs=507.7

Q ss_pred             CCCccchhhhhhhhchhhHHHHHHHHHHHHHHhccCcchHhhhhcCccccCCCCCcccCccccccccccccchhhhhhhh
Q psy17468          1 MDYEVPMKKLSEEFIPHAKLLFQALMSLRAIYSYRNVSADQMRNDQKLSLVGNPGQLLKPARTERMSCEYLSQESLDRWI   80 (538)
Q Consensus         1 ~dyd~PlKkL~eef~p~~~~i~~aL~Sl~~~y~rr~~~a~~wR~~~~Lsl~~~P~~~l~pa~sd~~~cE~ls~e~m~~Wi   80 (538)
                      .|||+|+|||+|||+||+++|++||.||+++|+||+.+|++||++|+||++++|++|++|+++|||+|||+|+++|+|||
T Consensus       183 ~~yd~PlkkL~eef~p~~~~I~~aL~Sl~~~~~~r~~~a~~wR~~~~LSl~~~P~~~~~pa~~d~~~~ells~e~m~~WI  262 (1128)
T 3p8c_B          183 VDYENPLKKMMEEFVPHSKSLSDALISLQMVYPRRNLSADQWRNAQLLSLISAPSTMLNPAQSDTMPCEYLSLDAMEKWI  262 (1128)
T ss_dssp             HHTSSHHHHHHHHTTTTHHHHHHHHHGGGGTHHHHSCCHHHHHHTTTTCSSSSGGGTTSCCCCTTHHHHHSCHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccCcHHHHhhcCcCCCcCChhhhCCcccccchhHHHHhHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeeccCCCCCC-chhHHHHHHHhcCCceEEeechhhHhhHHHHHHHHhhhhhcccchhHHhhHHHHHHHHhhHHHHHH
Q psy17468         81 IFGFMLCHQPLSQ-EPVSKLWTAALENNWVIALFRDEVIYIHQYIQGFFDTIKGYGKRVSEVKDCYSHAVSKAALEHREK  159 (538)
Q Consensus        81 i~g~L~cp~~L~~-~~~~~lw~~aL~~~~vl~LfRdev~~iH~~~e~~~~s~K~y~Kr~~~vkE~~~~A~~~~~~~HreR  159 (538)
                      +||||+||++|++ ++++++|++||++|||||||||||++||+++|++|+|+|+||||+++||||+++|+++||..||||
T Consensus       263 ifg~L~cp~~L~~~~~~~~l~~~aL~~~~vl~LfRdevi~iH~~~q~~~~s~K~y~K~v~~ikE~~~~A~~~a~~~HreR  342 (1128)
T 3p8c_B          263 IFGFILCHGILNTDATALNLWKLALQSSSCLSLFRDEVFHIHKAAEDLFVNIRGYNKRINDIRECKEAAVSHAGSMHRER  342 (1128)
T ss_dssp             HHHHHHTTHHHHHCHHHHHHHHHHHTTCSEEEEETTEEEEHHHHHHHHHTTCGGGTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeecchhhccChhHHHHHHHHhccCCEEEEecceeeeHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCchhhHHH
Confidence            9999999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCcchHHHHHHhhhhhhhhhHHHhhcCCCCCCCCCCCCCccccccCcchHHHH-------
Q psy17468        160 RKFLRTALKELGLLFSDQPGLLGPKALLIFIGLSYARDEVYWLLRHNDNPPVQKGKSKSAEDLVDRQLPELEM-------  232 (538)
Q Consensus       160 R~~LR~aLkel~~ll~DqPgLLgPK~l~vf~aLs~aRdEV~Wl~rH~~~~p~~~k~k~~~ed~~D~~l~eLLf-------  232 (538)
                      |+|||++||||+++|+|||||||||+++||||||||||||+|||||++++|+  |   ++||++|++|+||||       
T Consensus       343 R~~LR~~Lkel~~i~~DqPgLLgPK~~~v~~aLs~ArdEV~W~~rH~~~~pk--k---~~~d~~D~~i~eLLf~m~eLr~  417 (1128)
T 3p8c_B          343 RKFLRSALKELATVLSDQPGLLGPKALFVFMALSFARDEIIWLLRHADNMPK--K---SADDFIDKHIAELIFYMEELRA  417 (1128)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHSCC--S---STTTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcccChhHHHHHHHHHHHHHHHHHHHHccccCCC--C---CcccchhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999994  3   699999999999999       


Q ss_pred             ---H----------------------------------------------------------------------------
Q psy17468        233 ---K----------------------------------------------------------------------------  233 (538)
Q Consensus       233 ---k----------------------------------------------------------------------------  233 (538)
                         |                                                                            
T Consensus       418 Lv~k~~~vIqrYy~qyLs~~Da~~L~~~iq~l~~~p~ees~i~ss~~~tl~~L~~~q~e~~~~~Df~~lRlDW~Rlqa~~  497 (1128)
T 3p8c_B          418 HVRKYGPVMQRYYVQYLSGFDAVVLNELVQNLSVCPEDESIIMSSFVNTMTSLSVKQVEDGEVFDFRGMRLDWFRLQAYT  497 (1128)
T ss_dssp             HHHHSHHHHHHHHHHHHHHTHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHTCCHHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCChhhhccCCCCCcHHHHHHHHHHHHHH
Confidence               0                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17468        234 --------------------------------------------------------------------------------  233 (538)
Q Consensus       234 --------------------------------------------------------------------------------  233 (538)
                                                                                                      
T Consensus       498 S~~~~~l~l~~~~~l~~~mN~~~fhsk~VD~lde~L~e~sdLs~l~FY~~~~~~~F~~cl~~p~q~ry~~af~~ics~F~  577 (1128)
T 3p8c_B          498 SVSKASLGLADHRELGKMMNTIIFHTKMVDSLVEMLVETSDLSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFM  577 (1128)
T ss_dssp             HSTTCSSCGGGCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCGGGGGCHHHHHHHHHHHHHSHHHHTTTTHHHHHGGGGG
T ss_pred             HccccCcCcchhHHHHHHHHHHHHHHHHHhhHHHHHHHhcchhheeehhHHHHHHHHHHhcCcccchHHHHHHHHHhchh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17468        234 --------------------------------------------------------------------------------  233 (538)
Q Consensus       234 --------------------------------------------------------------------------------  233 (538)
                                                                                                      
T Consensus       578 ~~~h~~cPEE~~~i~~~sl~~~~~fLe~ia~~~~~~i~~i~~~~~~l~~qLlP~~aA~~i~~~~~~k~kk~~~~k~~~~~  657 (1128)
T 3p8c_B          578 SCTHELCPEERHHIGDRSLSLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNKKSKKQTGKKGEPER  657 (1128)
T ss_dssp             GGCCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGHHHHHHHTTC--------------
T ss_pred             ccCCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCHHHHHHHHHHHHHHhcccccCccCCCCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy17468        234 --------------------------------------------------------------------------------  233 (538)
Q Consensus       234 --------------------------------------------------------------------------------  233 (538)
                                                                                                      
T Consensus       658 ~~PG~ES~r~~r~~~t~~dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~~~~~~~~i~RPS  737 (1128)
T 3p8c_B          658 EKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHLEIRFTKSIVGMTMYNQATQEIAKPS  737 (1128)
T ss_dssp             CCTTGGGCCSCTTSCCHHHHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHHHHHHHHHHHHHTTCBTTTTBCCCHH
T ss_pred             CCCCccccccChHHHhhHHHHHHHHHHHHHHhccCCCeeEEeeeeccHHHHHHHHHHHHHHHHHHHhccCCCccccCChH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------------------Hh--
Q psy17468        234 ----------------------------------------------------------------------------FI--  235 (538)
Q Consensus       234 ----------------------------------------------------------------------------Fv--  235 (538)
                                                                                                  ||  
T Consensus       738 ell~~l~a~m~vlq~~e~~v~iDvt~~i~~vLLqqtq~~D~~G~~tit~~yt~WYle~llr~~s~~~iv~sp~~~~Fvs~  817 (1128)
T 3p8c_B          738 ELLTSVRAYMTVLQSIENYVQIDITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAFVNL  817 (1128)
T ss_dssp             HHHHHHHHHHHHHHHGGGTSSCCHHHHHHHHHHHTTSSBCTTSCBCHHHHHHHHHHHTHHHHHHTTSEEEETTTTEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCccccCCCccHHHHHHHHHHHHHHHhccCCceEEccHHHHhhcC
Confidence                                                                                        45  


Q ss_pred             -hcCCcccccccCCCHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHhhh
Q psy17468        236 -AEGAIPFNAEEFSDVNELRALADLIGPYGMKLLNETLMWHIASQVQELKKLVAANKEVLLLLRTHFDKPEIMKEQSKRL  314 (538)
Q Consensus       236 -~~~~~~f~AE~ysD~~ELrAL~eLiGPYG~k~L~e~L~~hia~qv~elkklv~~N~d~L~~lr~~f~~p~~m~~~lk~L  314 (538)
                       +.|+++|+||+|||++|||||||||||||||+|+|+|||||++||+||||+|++|+|+|+++|+||||||+|++++|+|
T Consensus       818 ~~~g~~~f~AE~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~~N~~~L~~lr~~~~~~~~m~~~lk~l  897 (1128)
T 3p8c_B          818 PTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVVENVDVLTQMRTSFDKPDQMAALFKRL  897 (1128)
T ss_dssp             SSSCCCCSCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHCTTCHHHHHHHHTTC
T ss_pred             CCCCCCCcCHHhcCCHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHhh
Confidence             3468899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccCchhhhhHHHHhhcCCCCCCch----HHHHHHHhCCCCCCCHHHHH
Q psy17468        315 HNVENVLQRMTIIGVILNFQRIAQLALQEVLESRVPFLLNSVQDFYQHSPVGDPKI----VNEMASAAGLLCTVDPALAT  390 (538)
Q Consensus       315 ~~~e~~l~r~~iiG~iL~FR~l~~eAl~~VL~~~~Pfl~s~I~~~~~~~~~~~~l~----v~~lA~aaGl~~~vD~~Lv~  390 (538)
                      +++|+|++||||||+||+||+|+|||+++||++|+|||+|+|+++++|+|+++|++    |+|||++||++|||||+|++
T Consensus       898 ~~~d~~l~r~~~iG~iL~FR~ll~eAl~~Vl~~~~Pfl~s~i~~~~~~~~~~~~~k~~l~v~~lA~~aG~~~~vD~~L~~  977 (1128)
T 3p8c_B          898 SSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSSIEDFKDHIPRETDMKVAMNVYELSSAAGLPCEIDPALVV  977 (1128)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC-----CCSSHHHHHHHHHHTTCCCSSCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhCCCcCcchhhhhHHHHHHhcCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999854    78999999999999999999


Q ss_pred             HHhccCCC--CCchhhHHHHHHHHHHHHHhcccccCCccccccccccccchhhhHHHHHHHHHHHHhcccCCCCHHHHHH
Q psy17468        391 ALASDKTD--LDEDEHVLACLLMVFVAVCIPKLARNEACFYLASLEGHSNNIHCMASAINHIFSALFTLCGQGDLEDRMK  468 (538)
Q Consensus       391 al~~~~~~--~~d~~y~~w~LL~vf~avslp~l~~~~~s~y~~~~~g~~NN~HCla~aIn~l~~a~f~l~g~~~Ie~~mk  468 (538)
                      +|++++++  +||+||++|||||||+|||||+++.|++|+|++++|||+||+||+|+|||+|++|+|+++ +++|+++||
T Consensus       978 al~~~~~~~~~~d~~~~~~~lLlv~~Avsl~~~~~~~~s~Y~~~l~g~~NN~HCla~ain~l~~a~fsl~-~~~i~~~mk 1056 (1128)
T 3p8c_B          978 ALSSQKSENISPEEEYKIACLLMVFVAVSLPTLASNVMSQYSPAIEGHCNNIHCLAKAINQIAAALFTIH-KGSIEDRLK 1056 (1128)
T ss_dssp             HHTC------CHHHHHHHHHHHHHHHHHHGGGGGGCGGGCEETTTTEETTCGGGHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHHhhhhhcCCCceeecccccccchHHHHHHHHHHHHHHHhccC-cccHHHHHH
Confidence            99999987  799999999999999999999999999999999999999999999999999999999999 689999999


Q ss_pred             HHHHHHhhhhhccCCCCCCcccCCcchhHhhHHHHHhcCCCCchhhhhhhchHHHHHHHHHHhhhhccCC
Q psy17468        469 EFLALTSSSLLRLGQDPDEESTRHRDSVYLLLHQIVQESPFLTMDLLESCFPYALIRNAYHAVSKQEHAM  538 (538)
Q Consensus       469 eFL~lASs~lL~l~~e~~k~~~k~r~sv~ilLdqiV~~SpfLt~d~LEscfPY~LlRnaY~~~y~~~~~~  538 (538)
                      |||++||++|||+|||++|+.+|||+|+|||||||||+|||||||+||+||||+|||||||++|++++++
T Consensus      1057 eFl~lAS~~lLrl~~e~~k~~~k~~~sv~i~Ld~~ve~Sp~Lt~d~LE~cfPY~LlR~aY~~~y~~~~~~ 1126 (1128)
T 3p8c_B         1057 EFLALASSSLLKIGQETDKTTTRNRESVYLLLDMIVQESPFLTMDLLESCFPYVLLRNAYHAVYKQSVTS 1126 (1128)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTTTTTHHHHHHHHHHHHHHCTTCCHHHHHHHSCHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhhhccccccccccceeehhHHHHHhhCCCCCHHHHHHhcCHHHHHHHHHHHHhccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999764

PyMOL of 3p8c

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00