Psyllid ID: psy17475

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAAAAPAAAAPAASNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHcccccccccccccccccccEEEEEEcccHHHHHHHHHHccccccccccccccccEEEccccccccccccHHHHHccccEEEEccEEEEEEcEEEEEcccccHHHHHHHHccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHccccccccccEEEEEEccccccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHccEEEEEEcccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccccccccEccccEEEccccccccccccHHHHHcccccEEEccEEEEEccEEEEEccccHHHHHHHHHccccccEEcEEEEEEEccccEccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccEEEEcccccccccccccHHEEEcccEEEEEccEEEEEccccccHHHHHHHHHccccccEEcEEEEEEEccccEccHHHccccHHHHHHHHcc
Coil and Loop (DISEMBL)
qlvdeypkcfvvgadnvgsrqFQNIRQSLEGLGVVLMGKNTMMRKAIRghlehnpglerllphikgnvgfvftrgDLNEVREKLLENkvqaparngaiapcpvtipaqntglgpektsffqalsiptkiskgtieiINDVHilkegdssrEATLLNMLNISPFSYGLIIKMVydsgtifapqildirpedlRVKFLEGVATLASVCLSigyptvasvphsIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAAaapaaaapaasnrseerfsrnaetdlndvhilkegdkvgpseaTLLNMLNISPFSYGLIIKMVydsgtifapqildirpedlrvkfle
Flexible Loop (DISEMBL)
QLVDEYPKCFVvgadnvgsrqfQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKvqaparngaiapcPVTIPAQNTGLGPEKTSFFQALSIptkiskgtieIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAAAAPAaaapaasnrseerfsrnaetdlndvhilkegDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFapqildirpeDLRVKFLE
Low Complexity Region (SEG)
QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLaaaapaaaapaaSNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE
Disordered region (IsUnstruct)
*****YPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLK**************************************IL*********EATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDL******
Disordered Region (DISOPRED)
QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSK********************************VHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE
Disordered Region (DISEMBL)
QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAA********************NAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE
Disordered Region (DISPRO)
QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAAAAPAAAAPAASNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAAAAPAAAAPAASNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q9U3U0	317	60S acidic ribosomal prot	N/A	N/A	0.739	0.807	0.798	1e-118
P19889	317	60S acidic ribosomal prot	yes	N/A	0.736	0.804	0.789	1e-118
Q9DG68	315	60S acidic ribosomal prot	N/A	N/A	0.736	0.809	0.712	1e-105
Q29214	318	60S acidic ribosomal prot	yes	N/A	0.736	0.801	0.700	3e-99
P05388	317	60S acidic ribosomal prot	yes	N/A	0.736	0.804	0.696	4e-99
Q95140	318	60S acidic ribosomal prot	yes	N/A	0.736	0.801	0.696	4e-99
P47826	316	60S acidic ribosomal prot	yes	N/A	0.731	0.800	0.709	5e-99
P14869	317	60S acidic ribosomal prot	yes	N/A	0.736	0.804	0.696	2e-98
Q90YX1	317	60S acidic ribosomal prot	N/A	N/A	0.736	0.804	0.688	2e-98
Q93572	312	60S acidic ribosomal prot	yes	N/A	0.736	0.817	0.622	7e-97

>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/258 (79%), Positives = 230/258 (89%), Gaps = 2/258 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           +L DEYPKCF+VGADNVGS+Q QNIR SL GLGVVLMGKNTMMRKAIRGHLE+N  LE+L
Sbjct: 19  ELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLENNAQLEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFT+GDL EVR+KLLE+KV+APAR GAIAP PV IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDV ILK GD   + EATLLNMLNISPFSYGL I  VYDSG+I
Sbjct: 139 QALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F+P+ILDI+PEDLR KF  GVA LA+V L IGYPT+AS PHSI NGFKN+LA+AA+TEV+
Sbjct: 199 FSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVE 258

Query: 239 FEQAKTVKEFLKDPSKFL 256
           F+QA T+KEF+KDPSKF+
Sbjct: 259 FKQAATIKEFIKDPSKFV 276

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
Ceratitis capitata (taxid: 7213)

>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/257 (78%), Positives = 231/257 (89%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           +L DE+PKCF+VGADNVGS+Q QNIR SL GL VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  ELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLENNPQLEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFT+GDL EVR+KLLE+KV+APAR GAIAP  V IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDV ILK GD   + EATLLNMLNISPFSYGLI+  VYDSG+I
Sbjct: 139 QALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F+P+ILDI+PEDLR KF +GVA LA+VCLS+GYPT+AS PHSI NGFKN+LA+AA TEV+
Sbjct: 199 FSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVE 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F++A T+KE++KDPSKF
Sbjct: 259 FKEATTIKEYIKDPSKF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 2

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 8

>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/257 (71%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+N  LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNSALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFT+ DL EVR+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ VYD+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           ++P++LDI  + LR +FLEGV  +ASVCL IGYPTVASVPHS+VNG+K VLA+A  T+  
Sbjct: 199 YSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYS 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F  A  VK FL DPS F
Sbjct: 259 FPLADKVKAFLADPSAF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Rana sylvatica (taxid: 45438)

>sp|Q29214|RLA0_PIG 60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2

 Score =  362 bits (928), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/257 (70%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ V+D+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct: 199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F  A+ VK FL DPS F
Sbjct: 259 FPLAEKVKAFLADPSAF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Sus scrofa (taxid: 9823)

>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1

 Score =  361 bits (927), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct: 199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F  A+ VK FL DPS F
Sbjct: 259 FPLAEKVKAFLADPSAF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Homo sapiens (taxid: 9606)

>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3

 Score =  361 bits (927), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct: 199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F  A+ VK FL DPS F
Sbjct: 259 FPLAEKVKAFLADPSAF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Bos taurus (taxid: 9913)

>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1

 Score =  361 bits (926), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 212/255 (83%), Gaps = 2/255 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCFVVGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LDI  E L  +FLEGV  +ASVCL IGYPT+ASVPHSIVNG+K VLAVA  T+  
Sbjct: 199 YNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYT 258

Query: 239 FEQAKTVKEFLKDPS 253
           F  A+ VK FL DPS
Sbjct: 259 FPLAEKVKAFLADPS 273

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Gallus gallus (taxid: 9031)

>sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 212/257 (82%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ V+D+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LDI  + L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  TE  
Sbjct: 199 YNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYT 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F   + VK FL DPS F
Sbjct: 259 FPLTEKVKAFLADPSAF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Mus musculus (taxid: 10090)

>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1

 Score =  359 bits (921), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+++YPKCF+VGADNVGS+Q Q IR SL G  +VLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLENNPALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL EVR+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV +++ GD   + EATLLNMLNISPFSYGLII+ VYD+G++
Sbjct: 139 QALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSV 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           ++P++LDI  + L  +FLEGV  +ASVCL IGYPT+AS+PHSI+NG+K VL VA  T+  
Sbjct: 199 YSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYS 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F  A  VK FL DPS+F
Sbjct: 259 FPMADKVKAFLADPSRF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Ictalurus punctatus (taxid: 7998)

>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3

 Score =  354 bits (908), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 160/257 (62%), Positives = 208/257 (80%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           +L +EYPKC +VG DNVGS+Q Q IRQ++ G   +LMGKNTM+RKA+RGHL  NP LE+L
Sbjct: 19  ELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAPC V +P QNTG+GPEKTSFF
Sbjct: 79  LPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL IPTKI++GTIEI+NDVH++KEGD   + E+ LLNML ++PFSYGL+++ VYD GT+
Sbjct: 139 QALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTL 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LD+  E+LR +FL GV  +ASV L++ YPT+ASV HS+ NG +N+L VAA T+V 
Sbjct: 199 YTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVS 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F++A+T+K F+ DPSKF
Sbjct: 259 FKEAETIKAFIADPSKF 275

Ribosomal protein P0 is the functional equivalent of E.coli protein L10.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
50344450	317	acidic p0 ribosomal protein [Biphyllus l	0.736	0.804	0.805	1e-119
380690657	301	ribosomal protein P0, partial [Eupoecili	0.739	0.850	0.794	1e-118
289742497	312	60s acidic ribosomal protein P0 [Glossin	0.754	0.836	0.775	1e-118
315131319	316	venom protein Ci-40b [Chelonus inanitus]	0.736	0.806	0.801	1e-118
383862848	316	PREDICTED: 60S acidic ribosomal protein	0.736	0.806	0.797	1e-118
380690659	301	ribosomal protein P0, partial [Lobesia b	0.736	0.847	0.801	1e-117
322797915	318	hypothetical protein SINV_09784 [Solenop	0.736	0.801	0.801	1e-117
307199372	316	60S acidic ribosomal protein P0 [Harpegn	0.745	0.816	0.780	1e-117
307167494	318	60S acidic ribosomal protein P0 [Campono	0.736	0.801	0.801	1e-117
380690641	301	ribosomal protein P0, partial [Cydia pom	0.736	0.847	0.797	1e-117

>gi|50344450|emb|CAH04311.1| acidic p0 ribosomal protein [Biphyllus lunatus]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/257 (80%), Positives = 232/257 (90%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL++EYPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAI+GH+E NP LE+L
Sbjct: 19  QLLEEYPKCFIVGADNVGSKQMQQIRISLRGSAVVLMGKNTMMRKAIKGHIERNPCLEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFTRGDL EVR+KLLENKV+APARNGAIAP PV IPA+NTGLGPEKTSFF
Sbjct: 79  LPHIKGNVGFVFTRGDLVEVRDKLLENKVRAPARNGAIAPLPVVIPARNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGLI++ VYDSGT+
Sbjct: 139 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLIVEQVYDSGTV 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           FAP ILDI+PEDL+ KFL GVA LA+VCLSIGYPT AS PHSI NGFKN+LA+AA TEV+
Sbjct: 199 FAPAILDIKPEDLKAKFLAGVANLAAVCLSIGYPTTASAPHSIANGFKNLLAIAAVTEVE 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F++AKT+KE++KDPSKF
Sbjct: 259 FKEAKTIKEYIKDPSKF 275

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380690657|gb|AFD93397.1| ribosomal protein P0, partial [Eupoecilia ambiguella]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/258 (79%), Positives = 230/258 (89%), Gaps = 2/258 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+DEYPKCF+VGADNVGS+Q Q IR SL G  +VLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 12  QLLDEYPKCFIVGADNVGSKQMQQIRMSLRGHSIVLMGKNTMMRKAIRGHLENNPALEKL 71

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPH+KGNVGFVFTRGDL EVREKLLENKV+A AR GAIAP  V +PA NTGLGPEKTSFF
Sbjct: 72  LPHVKGNVGFVFTRGDLVEVREKLLENKVRALARPGAIAPLSVIVPAHNTGLGPEKTSFF 131

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGL++K VYDSGTI
Sbjct: 132 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 191

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F P ILDI+PEDLR +FLEGVA +A++ LSIGYPT+AS PHSI NGFKN+LA+AA TEVD
Sbjct: 192 FTPAILDIKPEDLRARFLEGVANVAAISLSIGYPTIASAPHSIANGFKNLLAIAAVTEVD 251

Query: 239 FEQAKTVKEFLKDPSKFL 256
           F++AKT+KEF+KDPSKF+
Sbjct: 252 FKEAKTIKEFIKDPSKFV 269

Source: Eupoecilia ambiguella

Species: Eupoecilia ambiguella

Genus: Eupoecilia

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742497|gb|ADD19996.1| 60s acidic ribosomal protein P0 [Glossina morsitans morsitans]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 204/263 (77%), Positives = 233/263 (88%), Gaps = 2/263 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           +L +EYPKCF+VGADNVGSRQ Q IR SL G+G+VLMGKNTMMRKAIRGHLE NP LE+L
Sbjct: 19  ELFNEYPKCFIVGADNVGSRQMQTIRISLRGMGIVLMGKNTMMRKAIRGHLESNPQLEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFT+GDL EVR+KLLE+KV+APAR GAIAP PV IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVVIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDV ILK GD   + EATLLNMLNISPFSYGL+I  VYDSG+I
Sbjct: 139 QALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLVINQVYDSGSI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F+P+ILDI+PEDLR KF  GVA LA+VCL +GYPT+AS PHSI NGFKN+LA+AA TE++
Sbjct: 199 FSPEILDIKPEDLRAKFQAGVANLAAVCLEVGYPTIASAPHSIANGFKNLLAIAATTEIE 258

Query: 239 FEQAKTVKEFLKDPSKFLAAAAP 261
           F++A T+KE++KDPSKF  +AAP
Sbjct: 259 FKEAATIKEYIKDPSKFAVSAAP 281

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315131319|emb|CBM69268.1| venom protein Ci-40b [Chelonus inanitus]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 231/257 (89%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+++YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGH+E N  LE+L
Sbjct: 19  QLLEDYPKCFIVGADNVGSKQMQQIRMSLRGNAVVLMGKNTMMRKAIRGHIERNAALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFTRGDL EVR+KLLENKV+APAR GA+AP  V IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTRGDLVEVRDKLLENKVRAPARAGAMAPLSVVIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGLI++ VYDSGTI
Sbjct: 139 QALSIPTKISKGTIEIINDVHILKPGDRVGASEATLLNMLNISPFSYGLIVEQVYDSGTI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           FAP+ILDI+PEDLR KFL GVA LA+VCL+IGYPTVASVPHSIVNGFKN+LA+AA TEV+
Sbjct: 199 FAPEILDIKPEDLREKFLAGVANLAAVCLAIGYPTVASVPHSIVNGFKNLLAIAAVTEVE 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F +A T+KE++KDPSKF
Sbjct: 259 FAEATTIKEYIKDPSKF 275

Source: Chelonus inanitus

Species: Chelonus inanitus

Genus: Chelonus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862848|ref|XP_003706895.1| PREDICTED: 60S acidic ribosomal protein P0-like [Megachile rotundata]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/257 (79%), Positives = 231/257 (89%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGH+E N  LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGNAVVLMGKNTMMRKAIRGHIERNAALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFTRGDL EVR+KLLENKV+APAR GAIAP  V IPAQNTGLGPEKT+FF
Sbjct: 79  LPHIRGNVGFVFTRGDLIEVRDKLLENKVRAPARAGAIAPLSVIIPAQNTGLGPEKTAFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGLI++ VYDSGTI
Sbjct: 139 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLIVEQVYDSGTI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           FAP+ILDI+PEDLR KF+ GVA LA+VCLSIGYPT+ASVPHSIVNGFKN+LA+AA TE++
Sbjct: 199 FAPEILDIKPEDLREKFMAGVANLAAVCLSIGYPTIASVPHSIVNGFKNLLAIAAVTEIE 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F +A T+KE++KDPSKF
Sbjct: 259 FAEAATIKEYIKDPSKF 275

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380690659|gb|AFD93398.1| ribosomal protein P0, partial [Lobesia botrana]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 228/257 (88%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+DEYPKCF+VGADNVGS+Q Q IR SL G  +VLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 12  QLLDEYPKCFIVGADNVGSKQMQQIRMSLRGHSIVLMGKNTMMRKAIRGHLENNPALEKL 71

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFTRGDL EVREKLLENKV+A AR GAIAP  V +PA NTGLGPEKTSFF
Sbjct: 72  LPHIKGNVGFVFTRGDLVEVREKLLENKVRALARPGAIAPLSVIVPAHNTGLGPEKTSFF 131

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGL++K VYDSGTI
Sbjct: 132 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 191

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F P ILDI+PEDLR +FLEGVA +AS+ LSIGYPT+AS PHSI NGFKN+LA+AA TEVD
Sbjct: 192 FTPAILDIKPEDLRARFLEGVANVASLYLSIGYPTIASAPHSIANGFKNLLAIAAVTEVD 251

Query: 239 FEQAKTVKEFLKDPSKF 255
           F++A T+KEF+KDPSKF
Sbjct: 252 FKEATTIKEFIKDPSKF 268

Source: Lobesia botrana

Species: Lobesia botrana

Genus: Lobesia

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797915|gb|EFZ19789.1| hypothetical protein SINV_09784 [Solenopsis invicta]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 230/257 (89%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGH+E N  LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGNAVVLMGKNTMMRKAIRGHIERNAALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFTRGDL EVR+KLLENKV+APAR GAIAP  V IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTRGDLIEVRDKLLENKVRAPARAGAIAPLSVIIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGL+++ VYDSGTI
Sbjct: 139 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLLVEQVYDSGTI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           FAP+ILDI+PEDLR KF+ GVA LASVCL+IGYPTVAS PHSIVNGFKN+LAVAA T+V+
Sbjct: 199 FAPEILDIKPEDLREKFMAGVANLASVCLAIGYPTVASAPHSIVNGFKNLLAVAAVTDVE 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F +A T+KE++KDPSKF
Sbjct: 259 FAEAATIKEYIKDPSKF 275

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199372|gb|EFN79997.1| 60S acidic ribosomal protein P0 [Harpegnathos saltator]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/260 (78%), Positives = 231/260 (88%), Gaps = 2/260 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G GVVLMGKNTMMRKAIRGH+E N  LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGNGVVLMGKNTMMRKAIRGHVERNAALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFTRGDL EVR+KLLENKV+APAR GAIAP  V IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTRGDLIEVRDKLLENKVRAPARAGAIAPLSVVIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGL+++ VYDSGTI
Sbjct: 139 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLLVEQVYDSGTI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           FAP+ILDI+PEDLR KFL GVA +AS+CL+I YPT+AS PHS+ NGFKN+LA+AA T+V+
Sbjct: 199 FAPEILDIKPEDLREKFLAGVANVASICLAISYPTIASAPHSVANGFKNLLAIAAVTDVE 258

Query: 239 FEQAKTVKEFLKDPSKFLAA 258
           F +A T+KE++KDPSKF AA
Sbjct: 259 FAEAATIKEYIKDPSKFAAA 278

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167494|gb|EFN61067.1| 60S acidic ribosomal protein P0 [Camponotus floridanus]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/257 (80%), Positives = 229/257 (89%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGH+E N  LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGNAVVLMGKNTMMRKAIRGHIERNAALEKL 78

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFTRGDL EVR+KLLENKV+APAR GAIAP  V IPAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTRGDLIEVRDKLLENKVRAPARAGAIAPLSVIIPAQNTGLGPEKTSFF 138

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGL+++ VYDSGTI
Sbjct: 139 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLLVEQVYDSGTI 198

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           FAP+ILDI+PEDLR KF+ GVA LASVCLSIGYPTVAS PHSI NGFKN+LA+AA TEV+
Sbjct: 199 FAPEILDIKPEDLREKFMAGVANLASVCLSIGYPTVASAPHSIANGFKNLLAIAAVTEVE 258

Query: 239 FEQAKTVKEFLKDPSKF 255
           F +A T+KE++KDPSKF
Sbjct: 259 FPEAATIKEYIKDPSKF 275

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380690641|gb|AFD93389.1| ribosomal protein P0, partial [Cydia pomonella]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/257 (79%), Positives = 227/257 (88%), Gaps = 2/257 (0%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+DEYPKCF VGADNVGS+Q Q +R SL G  +VLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 12  QLLDEYPKCFXVGADNVGSKQMQQVRMSLRGHSIVLMGKNTMMRKAIRGHLENNPALEKL 71

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHIKGNVGFVFTRGDL EVREKLLENKV+A AR GAIAP  V +PA NTGLGPEKTSFF
Sbjct: 72  LPHIKGNVGFVFTRGDLVEVREKLLENKVRALARPGAIAPLSVIVPAHNTGLGPEKTSFF 131

Query: 121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QALSIPTKISKGTIEIINDVHILK GD   + EATLLNMLNISPFSYGL++K VYDSGTI
Sbjct: 132 QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 191

Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F P ILDI+PEDLR +FLEGVA +AS+ LSIGYPT+AS PHSI NGFKN+LA+AA TEVD
Sbjct: 192 FTPAILDIKPEDLRARFLEGVANVASLSLSIGYPTIASAPHSIANGFKNLLAIAAVTEVD 251

Query: 239 FEQAKTVKEFLKDPSKF 255
           F++A T+KEF+KDPSKF
Sbjct: 252 FKEATTIKEFIKDPSKF 268

Source: Cydia pomonella

Species: Cydia pomonella

Genus: Cydia

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
FB|FBgn0000100	317	RpLP0 "Ribosomal protein LP0"	0.826	0.902	0.713	1.7e-107
UNIPROTKB|P47826	316	RPLP0 "60S acidic ribosomal pr	0.739	0.810	0.705	8.7e-95
RGD|621247	317	Rplp0 "ribosomal protein, larg	0.736	0.804	0.696	3.8e-94
UNIPROTKB|F1PUX4	317	RPLP0 "Uncharacterized protein	0.739	0.807	0.697	3.8e-94
UNIPROTKB|Q29214	318	RPLP0 "60S acidic ribosomal pr	0.739	0.805	0.697	3.8e-94
UNIPROTKB|F1MDN4	320	RPLP0 "60S acidic ribosomal pr	0.739	0.8	0.693	4.8e-94
UNIPROTKB|Q95140	318	RPLP0 "60S acidic ribosomal pr	0.739	0.805	0.693	4.8e-94
UNIPROTKB|P05388	317	RPLP0 "60S acidic ribosomal pr	0.739	0.807	0.693	4.8e-94
MGI|MGI:1927636	317	Rplp0 "ribosomal protein, larg	0.736	0.804	0.696	1.6e-93
UNIPROTKB|Q8NHW5	317	RPLP0P6 "60S acidic ribosomal	0.739	0.807	0.686	5e-92

FB|FBgn0000100 RpLP0 "Ribosomal protein LP0" [Drosophila melanogaster (taxid:7227)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 207/290 (71%), Positives = 240/290 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             +L DE+PKCF+VGADNVGS+Q QNIR SL GL VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 ELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLENNPQLEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHIKGNVGFVFT+GDL EVR+KLLE+KV+APAR GAIAP  V IPAQNTGLGPEKTSFF
Sbjct:    79 LPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QALSIPTKISKGTIEIINDV ILK GD   + EATLLNMLNISPFSYGLI+  VYDSG+I
Sbjct:   139 QALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             F+P+ILDI+PEDLR KF +GVA LA+VCLS+GYPT+AS PHSI NGFKN+LA+AA TEV+
Sbjct:   199 FSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVE 258

Query:   239 FEQAKTVKEFLKDPSKFLXXXXXXXXXXX--XSNRSEERFSRNAETDLND 286
             F++A T+KE++KDPSKF               + + EE     +E++  D
Sbjct:   259 FKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEED 308

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006281 "DNA repair" evidence=NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|P47826 RPLP0 "60S acidic ribosomal protein P0" [Gallus gallus (taxid:9031)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 182/258 (70%), Positives = 214/258 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCFVVGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  E L  +FLEGV  +ASVCL IGYPT+ASVPHSIVNG+K VLAVA  T+  
Sbjct:   199 YNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAEKVKAFLADPSAFV 276

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

RGD|621247 Rplp0 "ribosomal protein, large, P0" [Rattus norvegicus (taxid:10116)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 179/257 (69%), Positives = 214/257 (83%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             ++P++LDI  + L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKF 255
             F  A+ VK FL DPS F
Sbjct:   259 FPLAEKVKAFLADPSAF 275

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=ISO

UNIPROTKB|F1PUX4 RPLP0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 180/258 (69%), Positives = 214/258 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAEKVKAFLADPSAFV 276

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q29214 RPLP0 "60S acidic ribosomal protein P0" [Sus scrofa (taxid:9823)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 180/258 (69%), Positives = 214/258 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAEKVKAFLADPSAFV 276

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1MDN4 RPLP0 "60S acidic ribosomal protein P0" [Bos taurus (taxid:9913)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 179/258 (69%), Positives = 214/258 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAEKVKAFLADPSAFV 276

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q95140 RPLP0 "60S acidic ribosomal protein P0" [Bos taurus (taxid:9913)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 179/258 (69%), Positives = 214/258 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAEKVKAFLADPSAFV 276

GO:0005737 "cytoplasm" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P05388 RPLP0 "60S acidic ribosomal protein P0" [Homo sapiens (taxid:9606)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 179/258 (69%), Positives = 214/258 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAEKVKAFLADPSAFV 276

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:1927636 Rplp0 "ribosomal protein, large, P0" [Mus musculus (taxid:10090)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 179/257 (69%), Positives = 212/257 (82%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GLII+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LDI  + L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  TE  
Sbjct:   199 YNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYT 258

Query:   239 FEQAKTVKEFLKDPSKF 255
             F   + VK FL DPS F
Sbjct:   259 FPLTEKVKAFLADPSAF 275

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=IDA

UNIPROTKB|Q8NHW5 RPLP0P6 "60S acidic ribosomal protein P0-like" [Homo sapiens (taxid:9606)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 177/258 (68%), Positives = 211/258 (81%)

Query:     1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
             QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct:    19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLENNPALEKL 78

Query:    61 LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
             LPHI GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct:    79 LPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138

Query:   121 QALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGLIIKMVYDSGTI 178
             QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct:   139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198

Query:   179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
             + P++LD   E L  +FLEGV  +ASVCL  GYPTVASVPHSI+NG+K VLA++  T+  
Sbjct:   199 YNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDYT 258

Query:   239 FEQAKTVKEFLKDPSKFL 256
             F  A+ VK FL DPS F+
Sbjct:   259 FPLAENVKAFLADPSAFV 276

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006414 "translational elongation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42112	RLA02_ARATH	No assigned EC number	0.5405	0.7369	0.7968	yes	N/A
P05388	RLA0_HUMAN	No assigned EC number	0.6964	0.7369	0.8044	yes	N/A
Q95140	RLA0_BOVIN	No assigned EC number	0.6964	0.7369	0.8018	yes	N/A
Q29214	RLA0_PIG	No assigned EC number	0.7003	0.7369	0.8018	yes	N/A
P22685	RLA0_DICDI	No assigned EC number	0.4637	0.7023	0.7967	yes	N/A
Q8SRJ7	RLA0_ENCCU	No assigned EC number	0.3675	0.6647	0.7931	yes	N/A
O74864	RLA0_SCHPO	No assigned EC number	0.5269	0.7341	0.8141	yes	N/A
Q5JH36	RLA0_PYRKO	No assigned EC number	0.3007	0.6965	0.7088	yes	N/A
P47826	RLA0_CHICK	No assigned EC number	0.7098	0.7312	0.8006	yes	N/A
Q9Y8J3	RLA0_METVO	No assigned EC number	0.3076	0.6242	0.7272	yes	N/A
Q9PV90	RLA0_DANRE	No assigned EC number	0.6782	0.7312	0.7931	yes	N/A
Q9C3Z6	RLA0_PODAS	No assigned EC number	0.5443	0.7109	0.7834	yes	N/A
Q93572	RLA0_CAEEL	No assigned EC number	0.6225	0.7369	0.8173	yes	N/A
P14869	RLA0_MOUSE	No assigned EC number	0.6964	0.7369	0.8044	yes	N/A
P57691	RLA03_ARATH	No assigned EC number	0.5405	0.7369	0.7894	yes	N/A
Q9U3U0	RLA0_CERCA	No assigned EC number	0.7984	0.7398	0.8075	N/A	N/A
P19945	RLA0_RAT	No assigned EC number	0.6972	0.7196	0.7854	yes	N/A
P19889	RLA0_DROME	4, ., 2, ., 9, 9, ., 1, 8	0.7898	0.7369	0.8044	yes	N/A
P05317	RLA0_YEAST	No assigned EC number	0.4941	0.7369	0.8173	yes	N/A
Q8TZJ8	RLA0_PYRFU	No assigned EC number	0.2730	0.8179	0.8348	yes	N/A
P41095	RLA0_ORYSJ	No assigned EC number	0.5421	0.7745	0.8401	yes	N/A
Q9DG68	RLA0_RANSY	No assigned EC number	0.7120	0.7369	0.8095	N/A	N/A
P39097	RLA0_LEIIN	No assigned EC number	0.3554	0.6936	0.7430	yes	N/A
Q8NHW5	RLA0L_HUMAN	No assigned EC number	0.6901	0.7312	0.7981	yes	N/A
Q6M0L1	RLA0_METMP	No assigned EC number	0.3041	0.6127	0.6328	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	346
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	1e-124
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	6e-85
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	2e-64
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	3e-41
cd00379	155	cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f	6e-26
PTZ00135	310	PTZ00135, PTZ00135, 60S acidic ribosomal protein P	3e-21
COG0244	175	COG0244, RplJ, Ribosomal protein L10 [Translation,	6e-21
cd05796	163	cd05796, Ribosomal_P0_like, Ribosomal protein L10	5e-20
pfam00466	100	pfam00466, Ribosomal_L10, Ribosomal protein L10	5e-17
pfam00428	88	pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro	1e-15
cd05795	175	cd05795, Ribosomal_P0_L10e, Ribosomal protein L10	3e-08
PRK04019	330	PRK04019, rplP0, acidic ribosomal protein P0; Vali	2e-06
PTZ00240	323	PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov	8e-06

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score =  359 bits (924), Expect = e-124
 Identities = 149/275 (54%), Positives = 194/275 (70%), Gaps = 2/275 (0%)

Query: 2   LVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLL 61
           L+++Y K  +V  DNVGS+Q Q+IR+SL G   +LMGKNT++RKA++  LE  P LE+LL
Sbjct: 20  LLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLL 79

Query: 62  PHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQ 121
           PH+KGNVGFVFT+ DL EV+  +LENKV APAR G IAP  V IPA  TG+ P +TSFFQ
Sbjct: 80  PHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQ 139

Query: 122 ALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTIF 179
           AL I TKI KG IEI N+VH++KEG    + +A LL  LNI PFSYGL +  +YD+G+I+
Sbjct: 140 ALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIY 199

Query: 180 APQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDF 239
             ++LDI  ED+  KF EGV  +A++ L+ GYPT AS PHSI+N FKN+ A+   +   F
Sbjct: 200 DAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHSILNAFKNLAAIGLESGFTF 259

Query: 240 EQAKTVKEFLKDPSKFLAAAAPAAAAPAASNRSEE 274
             A+ +KE L +PS   AAAA AAAA AA+  +  
Sbjct: 260 PLAEKIKEALANPSAAAAAAAAAAAAAAAAAAAPA 294

Length = 310

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score =  254 bits (650), Expect = 6e-85
 Identities = 98/164 (59%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           +L+  YPK  +V ADNVGS+Q Q IR+SL G   +LMGKNT++R+A+R   + NP LE+L
Sbjct: 12  ELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKL 71

Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LP++KGNVGF+FT GD  E+R+ L ENKV APA+ GAIAPC V +PA  TG+ P  TSFF
Sbjct: 72  LPYLKGNVGFIFTNGDPFEIRKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFF 131

Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISP 162
           QAL IPTKI KG IEII+DV ++K+G+   + EATLLN LNI P
Sbjct: 132 QALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLNIKP 175

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score =  206 bits (526), Expect = 2e-64
 Identities = 109/293 (37%), Positives = 168/293 (57%), Gaps = 25/293 (8%)

Query: 5   EYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLE-----------H 53
           +Y     VG DNV S+Q  ++R++L G    +MGK T+  K +    +           +
Sbjct: 21  KYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFN 80

Query: 54  NPGLERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLG 113
           +   E+ L  + GN G +FT  ++ E+   L  ++V+APAR GAIAPC V +PA +TG+ 
Sbjct: 81  DQCEEKNL--LSGNTGLIFTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGME 138

Query: 114 PEKTSFFQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKM 171
           P +TSFFQAL+I TKI+KG +EI+ +  +L  GD   +  ATLL  LNISPF Y + +  
Sbjct: 139 PTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLS 198

Query: 172 VYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAV 231
           V+D G +F  + L +  + +    +EG++ +A++ L  G PT A++   +V+ FKN+LAV
Sbjct: 199 VWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAATIGPMLVDAFKNLLAV 258

Query: 232 AAATEVDFEQ--AKTVKEFLKD--------PSKFLAAAAPAAAAPAASNRSEE 274
           + AT  +FE+   K ++E   +         +   AAAAPAAA+ AA    EE
Sbjct: 259 SVATSYEFEEHNGKELREAALEGLLGGGGSAAAEAAAAAPAAASAAAKEEEEE 311

Length = 323

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score =  146 bits (371), Expect = 3e-41
 Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 17/281 (6%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIR--GHLEHNPGLE 58
           +L+  YP   +V  + + +RQ Q IR+ L G   + + KNT++++A+   G       LE
Sbjct: 17  ELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAG----EEDLE 72

Query: 59  RLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGL--GPEK 116
           +L  +++G V  +FT  +  ++ + L ++K  APA+ G IAP  + +PA  TG   GP  
Sbjct: 73  KLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGP-I 131

Query: 117 TSFFQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYD 174
            S  Q L IP +I KG I I  D  + K G+  S   A +L  L I P   GL +K  Y+
Sbjct: 132 LSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQKLGIKPIEVGLDLKAAYE 191

Query: 175 SGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAA 234
            G I+ P++L I  E  R    E      ++ ++  YPT  ++   I   F+   A+A  
Sbjct: 192 DGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAV- 250

Query: 235 TEVDFEQAKTVKEFLKDPSKFLAAA-APAAAAPAASNRSEE 274
            E      +T  + L   SK +A A A AAA        EE
Sbjct: 251 -EAGIVTPETADDIL---SKAVAQALALAAALADKDALDEE 287

Length = 330

>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

 Score =  101 bits (253), Expect = 6e-26
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 13/149 (8%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVL-MGKNTMMRKAIRGHLEHNPGLER 59
           +L+ +Y    VV    +   Q   +R+ L   G  L +GKNT+MR+A++G          
Sbjct: 12  ELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGTGFEE----- 66

Query: 60  LLPHIKGNVGFVFTRGDLNEVREKLLENKV---QAPARNGAIAPCPVTIPAQNTGLGPEK 116
           L P +KG     FT  D  EV + L +      +  A+ G +A   V  PA  T L    
Sbjct: 67  LKPLLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLP 125

Query: 117 TSFFQALSIPTKISKGTIEIINDVHILKE 145
           +   +   +   I      I     +L  
Sbjct: 126 S---REELLAMLIGLLKAPIAKLARLLNA 151

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 155

>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional

 Score = 92.0 bits (229), Expect = 3e-21
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 285 NDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKF 344
           N+VH++KEG KVG S+A LL  LNI PFSYGL +  +YD+G+I+  ++LDI  ED+  KF
Sbjct: 156 NEVHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKF 215

Query: 345 LE 346
            E
Sbjct: 216 QE 217

Length = 310

>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

 Score = 88.1 bits (219), Expect = 6e-21
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 23/180 (12%)

Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVL-MGKNTMMRKAIRGHLEHNPGLER 59
           +L+ E P   +V    +   Q   +R+ L   G  L + KNT++R+A+        GLE 
Sbjct: 17  ELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEE-----AGLEG 71

Query: 60  LLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSF 119
           L   +KG     F+  D     + L +         G  AP    +P             
Sbjct: 72  LDDLLKGPTAIAFSNEDPVAAAKLLKDFAK----EAGDKAPIKGGVPEGK---------- 117

Query: 120 FQALSIPTKISKGTIEIINDVHILKEGD-SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
              L     I+   +    ++ ++  G   +    LL  L   P   GL +   Y+ G +
Sbjct: 118 --VLGAAEVIALAKLPSKEELVVMLLGVLQAPATKLLRALKAVPDKVGLKLLAAYEKGVV 175

Length = 175

>gnl|CDD|240222 cd05796, Ribosomal_P0_like, Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

 Score = 85.3 bits (212), Expect = 5e-20
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 20/156 (12%)

Query: 3   VDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHL---EHNPGLER 59
           VD+Y   +V   DN+ + + ++IRQ  +       GKN +M+ A+ G     E+ P L +
Sbjct: 14  VDKYKYIYVFSVDNMRNNKLKDIRQEWKD-SRFFFGKNKVMQVAL-GRTPEDEYKPNLHK 71

Query: 60  LLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGP----- 114
           L  ++KG VG +FT     EV E          AR G+IA   VT+P      GP     
Sbjct: 72  LSKYLKGQVGLLFTNEPPEEVIEYFDSYSEPDFARAGSIATETVTLPE-----GPLEQFP 126

Query: 115 ---EKTSFFQALSIPTKISKGTIEIINDVHILKEGD 147
              E     + L +PTK+ KG I +  D  + +EG 
Sbjct: 127 HSMEPQ--LRKLGLPTKLKKGVITLEADYVVCEEGK 160

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 163

>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 1  QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGV-VLMGKNTMMRKAIRGHLEHNPGLER 59
          +L+ EY    VV    +   Q   +R+ L   G  + +GKNT+MR+A+ G  E     E 
Sbjct: 15 ELLKEYKSVVVVDYRGLTVAQLTELRKKLREAGAELKVGKNTLMRRALEGTGEE----EA 70

Query: 60 LLPHIKGNVGFVFTRGDLNEVREKLLEN 87
          L   +KG    +FT  D   V + L + 
Sbjct: 71 LSELLKGPTALIFTNEDPVAVAKVLKKF 98

Length = 100

>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 211 YPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKFLAAAAPAAAAPAA 268
            PT A + H +    K V A      V F + K +KE + + S  L+AAA AAAA AA
Sbjct: 1   EPTAADIKHVLKAAGKEVEAERLELLVKFLEGKNIKELIANGSAKLSAAAAAAAAAAA 58

This family includes archaebacterial L12, eukaryotic P0, P1 and P2. Length = 88

>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 18/28 (64%), Positives = 24/28 (85%)

Query: 284 LNDVHILKEGDKVGPSEATLLNMLNISP 311
           ++DV ++K+G+KVG SEATLLN LNI P
Sbjct: 148 ISDVVVVKKGEKVGASEATLLNKLNIKP 175

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2. Length = 175

>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 286 DVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLR 341
           D  + K G+ + P  A +L  L I P   GL +K  Y+ G I+ P++L I  E  R
Sbjct: 154 DTVVAKAGEVISPELANVLQKLGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYR 209

Length = 330

>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 284 LNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVK 343
           + +  +L  GDKV  S ATLL  LNISPF Y + +  V+D G +F  + L +  ED+  K
Sbjct: 162 VTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSM-TEDVVEK 220

Query: 344 FL 345
            L
Sbjct: 221 ML 222

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
PTZ00240	323	60S ribosomal protein P0; Provisional	100.0
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	100.0
KOG0815|consensus	245		100.0
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	100.0
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	100.0
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	100.0
KOG0816|consensus	223		100.0
KOG0815|consensus	245		99.95
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	99.92
PTZ00135	310	60S acidic ribosomal protein P0; Provisional	99.84
PTZ00240	323	60S ribosomal protein P0; Provisional	99.84
cd00379	155	Ribosomal_L10_P0 Ribosomal protein L10 family; com	99.79
PRK04019	330	rplP0 acidic ribosomal protein P0; Validated	99.77
PF00466	100	Ribosomal_L10: Ribosomal protein L10; InterPro: IP	99.72
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	99.66
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	99.66
cd05795	175	Ribosomal_P0_L10e Ribosomal protein L10 family, P0	98.88
cd05796	163	Ribosomal_P0_like Ribosomal protein L10 family, P0	97.12
KOG0816|consensus	223		96.84
PF00428	88	Ribosomal_60s: 60s Acidic ribosomal protein; Inter	96.76
COG0244	175	RplJ Ribosomal protein L10 [Translation, ribosomal	95.0
KOG4241|consensus	245		93.69

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=100.00  E-value=3.4e-82  Score=610.06  Aligned_cols=256  Identities=37%  Similarity=0.625  Sum_probs=249.0

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCC--CCcccc-------cCcccCCeEEE
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHN--PGLERL-------LPHIKGNVGFV   71 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~--~~l~~L-------~~~l~G~~gli   71 (346)
                      +++++|++||||+++||||+|||+||+.||++++|+||||||||+||++..++.  +++++|       .+|++||+||+
T Consensus        17 ~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~~~~l~Gnvgli   96 (323)
T PTZ00240         17 DCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEEKNLLSGNTGLI   96 (323)
T ss_pred             HHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHhhccccccchhHHHHhhhhccccccccCCEEEE
Confidence            478999999999999999999999999999999999999999999999986643  336666       49999999999


Q ss_pred             EecCCHHHHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--h
Q psy17475         72 FTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--S  149 (346)
Q Consensus        72 FTn~dp~ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~  149 (346)
                      |||+||++++++|++|++++|||+|+|||+||+||+|+|+|+|++++|||+|||||||++|+|+|.+|++||++||+  +
T Consensus        97 FTn~~p~ev~~~l~~~k~~a~AraG~IAp~dVvvpaG~T~~~P~~~s~fq~LGIpTkI~kGkIeI~~d~~v~k~Ge~V~~  176 (323)
T PTZ00240         97 FTNNEVQEITSVLDSHRVKAPARVGAIAPCDVIVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDN  176 (323)
T ss_pred             EeCCCHHHHHHHHHHcCCcccccCCCCCCceEEECCCCCCCCCcchHHHHHcCCCeEecCcEEEEecCeEEecCCCCcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999  9


Q ss_pred             hHhHHHHHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHH
Q psy17475        150 REATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVL  229 (346)
Q Consensus       150 ~~A~LL~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~  229 (346)
                      +||.||++|||+|++||++++++||+|.+|++++|+||+|+|.++|++|++++++||++++|||++|+||+|.|||++++
T Consensus       177 ~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~~a~~~~~~lsl~~~~pt~~si~~~i~~a~~~~~  256 (323)
T PTZ00240        177 STATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLMEGLSNVAAMSLGAGIPTAATIGPMLVDAFKNLL  256 (323)
T ss_pred             HHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccchhhHHHHhcCchhHH
Q psy17475        230 AVAAATEVDFEQAKTVKEFLKDPSKFL  256 (346)
Q Consensus       230 ala~~~~~~~~~~e~ik~~l~~p~~~a  256 (346)
                      +||++++|+||+.++++.+++||++|+
T Consensus       257 alav~~~~~~~~~~~~~~~~A~~~~~~  283 (323)
T PTZ00240        257 AVSVATSYEFEEHNGKELREAALEGLL  283 (323)
T ss_pred             HHhhhcCcCChhhHHHHHhhhCHHhhh
Confidence            999999999999999999999999999

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=100.00  E-value=1.2e-80  Score=599.53  Aligned_cols=257  Identities=54%  Similarity=0.883  Sum_probs=253.2

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      +++++|++++|++++||+++|||+||+.||++++++||||||||+||++..++.|++++|.++|+||+||+|||+||+++
T Consensus        19 e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~gliFTn~dp~ev   98 (310)
T PTZ00135         19 ELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVGFVFTKDDLFEV   98 (310)
T ss_pred             HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCcccccChHHHHhhccCCEEEEEECCCHHHH
Confidence            46899999999999999999999999999998999999999999999998777788999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475         81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML  158 (346)
Q Consensus        81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L  158 (346)
                      +++|.+|++++|||+|.|||+||+||+|+|+|+|+++||||+|||||||++|+|+|.+|++||++||+  ++||+||++|
T Consensus        99 ~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~LgipTkI~kG~I~I~~d~~v~k~Ge~v~~~~A~LL~~L  178 (310)
T PTZ00135         99 KPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKL  178 (310)
T ss_pred             HHHHHHcCCccccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCceEecCCeEEEecCeEEecCCCCcCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475        159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD  238 (346)
Q Consensus       159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~  238 (346)
                      ||+|++||+++.++||+|.+|++++|+||+|+|.++|++|++++.+||+++||||++++||+|.|||+|+++++++++|+
T Consensus       179 ~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~p~~ia~a~k~~~a~a~~~~~~  258 (310)
T PTZ00135        179 NIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHSILNAFKNLAAIGLESGFT  258 (310)
T ss_pred             CCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHhcCchhHHh
Q psy17475        239 FEQAKTVKEFLKDPSKFLA  257 (346)
Q Consensus       239 ~~~~e~ik~~l~~p~~~a~  257 (346)
                      ||+++++|.+++||++|++
T Consensus       259 ~~~~~~~~~~~a~~~~~~~  277 (310)
T PTZ00135        259 FPLAEKIKEALANPSAAAA  277 (310)
T ss_pred             ChhhHHHHHhhcCchhhcc
Confidence            9999999999999999997

>KOG0815|consensus

Probab=100.00  E-value=6.5e-69  Score=482.51  Aligned_cols=225  Identities=72%  Similarity=1.160  Sum_probs=222.3

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      +++++|+.++++..||+.+.|||+||+.|||.++++||||||||+|++.+.+.+|.++++.++++||+||+||+.|..|+
T Consensus        19 ~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a~vlmgkntm~rrair~~~~~~~~~~~llp~~~g~vgfvftk~~L~ei   98 (245)
T KOG0815|consen   19 QLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDAVVLMGKNTMMRRAIRGHLENNPALEKLLPVVKGNVGFVFTKGDLKEI   98 (245)
T ss_pred             HHHHhcCceEEEeecchhhHHHHHHHHHhcCceeeeechhHHHHHHHHhccCCcHHHHhhccceeeceeEEEEeccHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475         81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML  158 (346)
Q Consensus        81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L  158 (346)
                      ++.+.++++.++||+|+|||+||+||+++||++|+++||||+|||||||.||+|||.+|++++|+|||  +|+|+||+||
T Consensus        99 ~~~i~~n~~~apar~GaiAp~dV~V~~~nTg~~P~ktsfFQaLgIpTKIsrGtiEIlsdV~lik~GDKVGaSEAtLLnmL  178 (245)
T KOG0815|consen   99 RKEIIENKVGAPARVGAIAPIDVTVPAQNTGLGPEKTSFFQALGIPTKISRGTIEILSDVQLIKTGDKVGASEATLLNML  178 (245)
T ss_pred             HHHHHhcccccccccCCcCCceEEeccccCCCCcchhhhhhhcCCceeeecceEEecccceeeccCCccChhHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHH
Q psy17475        159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGF  225 (346)
Q Consensus       159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~  225 (346)
                      ||+||+|||.++++||||++|+||+||||+|++.+.|.+|+++++++||.++|||.+|+||++.|+|
T Consensus       179 ~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~~vs~va~~sL~~~ypt~asv~h~~~n~~  245 (245)
T KOG0815|consen  179 NISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLSGVSNVASVSLAAGYPTLASVPHSFINAY  245 (245)
T ss_pred             CCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHHHHHHHHHHHHhcCCCcccccchhhhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999986

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=100.00  E-value=3.4e-64  Score=490.27  Aligned_cols=246  Identities=31%  Similarity=0.517  Sum_probs=234.9

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      +++++|++++|++++|++++|+|+||+.||+.++|+|||||||++||++..+  +++++|.++|+|++||+|||+||+++
T Consensus        17 ~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~--~~~~~L~~~l~G~~alift~~dp~~v   94 (330)
T PRK04019         17 ELIKSYPVVGIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRALEEAGE--EDLEKLEDYLEGQVALIFTNMNPFKL   94 (330)
T ss_pred             HHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcCCEEEEEehHHHHHHHHhcCc--ccHHHHHhhccCCEEEEEECCCHHHH
Confidence            3688999999999999999999999999998899999999999999999854  56999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHH
Q psy17475         81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNM  157 (346)
Q Consensus        81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~  157 (346)
                      +++|.+|++++|||+|+|||+||+||+|+|++.|++ .++||+|||||+|++|+|+|.+|++||++|++  +++|.+|++
T Consensus        95 ~k~l~~~~~~~~ak~G~iA~~divip~G~t~~~P~~~~~~l~~lgipt~i~~G~I~i~~~~~v~~~G~~v~~~~a~lL~~  174 (330)
T PRK04019         95 YKLLEKSKTPAPAKPGDIAPEDIVVPAGPTGFPPGPILSELQKLGIPARIQKGKIVIKKDTVVAKAGEVISPELANVLQK  174 (330)
T ss_pred             HHHHHHcCCcccCCCCCCCCCeEEEcCCCCCCCCcccHHHHHHcCCCeEecCCEEEEecCeEEecCCCCcCHHHHHHHHH
Confidence            999999999999999999999999999999999987 69999999999999999999999999999999  999999999


Q ss_pred             cCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhccc
Q psy17475        158 LNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEV  237 (346)
Q Consensus       158 L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~  237 (346)
                      |||+|++|++++.++|++|.+|++++|+||++++..+|.+|++++++||++++|||++++||+|.+||+++++|+++++|
T Consensus       175 LgI~p~~~~~~i~a~~~~G~~~~~~~l~i~~e~~~~~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~  254 (330)
T PRK04019        175 LGIKPIEVGLDLKAAYEDGVIYTPEVLAIDEEKYRSDIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGI  254 (330)
T ss_pred             cCCCHHHhhhHHHHHHhcCCccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHhc
Q psy17475        238 DFEQAKTVKEFLK  250 (346)
Q Consensus       238 ~~~~~e~ik~~l~  250 (346)
                      .+  .+.++..|.
T Consensus       255 ~t--~e~~~~il~  265 (330)
T PRK04019        255 VT--PETADDILS  265 (330)
T ss_pred             CC--hhhHHHHHH
Confidence            65  445554443

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=100.00  E-value=1.6e-51  Score=368.49  Aligned_cols=162  Identities=60%  Similarity=0.962  Sum_probs=157.9

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      +++++|++++|++++|++++|+++||+.||++++|+|||||||++||++..++.+++++|.++|+|++||+|||+||+++
T Consensus        12 e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~liFt~~dp~~v   91 (175)
T cd05795          12 ELLKSYPKVLIVDADNVGSKQLQKIRRSLRGKAEILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVGFIFTNGDPFEI   91 (175)
T ss_pred             HHHHhCCEEEEEEecCCChHHHHHHHHHhhCCCEEEEechHHHHHHHHhcccccccHHHHHHHhcCCEEEEEECCCHHHH
Confidence            46899999999999999999999999999988999999999999999998777778999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475         81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML  158 (346)
Q Consensus        81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L  158 (346)
                      +++|++|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|++||++||+  ++||.||++|
T Consensus        92 ~k~l~~~~~~~~ar~G~iA~~dvvi~~G~t~~~p~~~~~~~~lgiptki~~G~i~i~~d~~v~k~G~~v~~~~A~lL~~l  171 (175)
T cd05795          92 RKILEENKVPAPAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKL  171 (175)
T ss_pred             HHHHHHcCCcccccCCCccCceEEEcCCCcCCCCCchHHHHHcCCceEEecCEEEEecCeEEecCCCCcCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             CCCc
Q psy17475        159 NISP  162 (346)
Q Consensus       159 ~I~p  162 (346)
                      ||+|
T Consensus       172 ~i~P  175 (175)
T cd05795         172 NIKP  175 (175)
T ss_pred             CCCC
Confidence            9998

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=100.00  E-value=1.9e-45  Score=325.77  Aligned_cols=147  Identities=31%  Similarity=0.458  Sum_probs=140.4

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDLN   78 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp~   78 (346)
                      ++|++|++++|++++|++++|+|+||+.||+. +|+|||||||++||++..+  ..+++++|.++|+|++||+|||+||+
T Consensus        12 e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~-~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~lift~~dp~   90 (163)
T cd05796          12 EAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS-RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGLLFTNEPPE   90 (163)
T ss_pred             HHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC-EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEEEEECCCHH
Confidence            46899999999999999999999999999997 9999999999999998764  46789999999999999999999999


Q ss_pred             HHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCC-chhhhhhcCCceEEecceEEEeeceeEeecCCc
Q psy17475         79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPE-KTSFFQALSIPTKISKGTIEIINDVHILKEGDS  148 (346)
Q Consensus        79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~-~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~  148 (346)
                      +++++|.+|++++|||+|+|||+||+||+|+|++.|+ +.++||+|||||+|++|+|+|.+|++||++||+
T Consensus        91 ~v~k~l~~~~~~~~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki~~G~I~i~~d~~v~k~G~~  161 (163)
T cd05796          91 EVIEYFDSYSEPDFARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKLKKGVITLEADYVVCEEGKV  161 (163)
T ss_pred             HHHHHHHHcCCcccccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEEeCCEEEEecCcEEECCCCC
Confidence            9999999999999999999999999999999998875 589999999999999999999999999999997

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>KOG0816|consensus

Probab=100.00  E-value=4e-42  Score=305.83  Aligned_cols=177  Identities=29%  Similarity=0.456  Sum_probs=168.1

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDLN   78 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp~   78 (346)
                      +++++|+++||+++.|||+..+++||..|+ +++|+||||++|.+||+...+  ..+++++++..++|.+||+|||+++.
T Consensus        32 ~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k-~sr~f~GknKVm~vaLG~~~~dE~~~~l~klskll~G~~GLlFTd~~ke  110 (223)
T KOG0816|consen   32 EAVDKYPYVFVFEVPNMRNTTLKEIRQDFK-NSRFFFGKNKVMQVALGRSREDEYKENLYKLSKLLKGSVGLLFTDMSKE  110 (223)
T ss_pred             HHHhhCCeEEEEEcCCcchHHHHHHHHHhh-ccceecchhhHHHHHhcCCchhhHHHHHHHhhhhccCceEEEecCCCHH
Confidence            367899999999999999999999999999 689999999999999999864  36789999999999999999999999


Q ss_pred             HHHHHHHhccccccccCCCCCCCcEEEcCCCCC-CCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHH
Q psy17475         79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTG-LGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLL  155 (346)
Q Consensus        79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~-~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL  155 (346)
                      ++.++|.+|...+|||+|++||.+|+||+|+.. +.+++.+.+|+|||||++.+|+|++.+|++||++||+  +.||.||
T Consensus       111 eV~e~f~sy~~~DyaR~g~vA~~Tv~ip~Gpl~~f~hsmEP~lRklglPt~lk~G~vtL~sdy~VCeEG~~Ld~rqA~IL  190 (223)
T KOG0816|consen  111 EVIEWFRSYVEEDYARAGDVAPETVTIPEGPLEQFAHSMEPQLRKLGLPTKLKKGVVTLLSDYTVCEEGDVLDPRQAKIL  190 (223)
T ss_pred             HHHHHHHHHHHHhhhccCCcCcceEeecCcchhhcccccchhhHhhcCceeecCCeEEEecCceeecCCcccCHHHHHHH
Confidence            999999999999999999999999999999964 7889999999999999999999999999999999999  9999999


Q ss_pred             HHcCCCcceeeeeeeEEecCCcc
Q psy17475        156 NMLNISPFSYGLIIKMVYDSGTI  178 (346)
Q Consensus       156 ~~L~I~p~~~~l~i~~~~~~g~~  178 (346)
                      ++||+++.+|++.+.++|+..+.
T Consensus       191 Klfg~kma~Fkl~~~~~w~~s~~  213 (223)
T KOG0816|consen  191 KLFGKKMAKFKLAVKAYWSKSSG  213 (223)
T ss_pred             HHHhHhhHhheEEEEEEEcCccc
Confidence            99999999999999999997543

>KOG0815|consensus

Probab=99.95  E-value=1.3e-29  Score=228.54  Aligned_cols=78  Identities=56%  Similarity=0.900  Sum_probs=75.4

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE  346 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~  346 (346)
                      +.+||+||+||+|||++|++|+|+|||||+|||+||+||||+||+|||.+++|||||+||+||+||||||+++++|.+
T Consensus       140 aLgIpTKIsrGtiEIlsdV~lik~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDiteE~l~~~f~~  217 (245)
T KOG0815|consen  140 ALGIPTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDITEEDLFSKFLS  217 (245)
T ss_pred             hcCCceeeecceEEecccceeeccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCCcHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999999999999999999999999999999999999863

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.5e-26  Score=207.11  Aligned_cols=155  Identities=24%  Similarity=0.354  Sum_probs=145.5

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNE   79 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~e   79 (346)
                      +++++|++++|+||+|+++.|+++||++||+. ++++|+||||+++|+++.     +.+.|.++++|+++++||++||++
T Consensus        17 e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~lkV~KNtL~~rAl~~~-----~~e~l~~~l~Gp~ai~fs~~dp~~   91 (175)
T COG0244          17 ELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAKLKVVKNTLLRRALEEA-----GLEGLDDLLKGPTAIAFSNEDPVA   91 (175)
T ss_pred             HHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcEEEEEhhHHHHHHHHhc-----chhhHHHhccCCeEEEEecCCHHH
Confidence            46889999999999999999999999999975 899999999999999998     566699999999999999999999


Q ss_pred             HHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHH
Q psy17475         80 VREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNM  157 (346)
Q Consensus        80 v~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~  157 (346)
                      ++++|.+|..+.    |++++.++.+++|.            .|++++.+..|+|.+.+|..+...|..  |.. .++..
T Consensus        92 ~~K~~~~f~k~~----~~~~~~~~~~~eg~------------~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~-~~~~~  154 (175)
T COG0244          92 AAKLLKDFAKEA----GDKAPIKGGVPEGK------------VLGAAEVIALAKLPSKEELVVMLLGVLQAPAT-KLLRA  154 (175)
T ss_pred             HHHHHHHHhhhh----cccceEEEEEecCc------------ccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHH-HHHHH
Confidence            999999988766    99999999999998            499999999999999999999999999  555 99999


Q ss_pred             cCCCcceeeeeeeEEecCCc
Q psy17475        158 LNISPFSYGLIIKMVYDSGT  177 (346)
Q Consensus       158 L~I~p~~~~l~i~~~~~~g~  177 (346)
                      |++.|.++++++.++|++|.
T Consensus       155 L~a~~~~~~~~~~a~~~~g~  174 (175)
T COG0244         155 LKAVPDKVGLKLLAAYEKGV  174 (175)
T ss_pred             HhccHHHHhhHHHHhhccCC
Confidence            99999999999999999885

>PTZ00135 60S acidic ribosomal protein P0; Provisional

Probab=99.84  E-value=4.7e-22  Score=192.44  Aligned_cols=76  Identities=43%  Similarity=0.731  Sum_probs=74.7

Q ss_pred             CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475        270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL  345 (346)
Q Consensus       270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~  345 (346)
                      .|+|++|.+|+|+|.+|++|+|+||+||+|+|.||++|||+||+|||.++++||+|.+|+|++||||+|++.++|+
T Consensus       141 LgipTkI~kG~I~I~~d~~v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~  216 (310)
T PTZ00135        141 LGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQ  216 (310)
T ss_pred             cCCceEecCCeEEEecCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHH
Confidence            4999999999999999999999999999999999999999999999999999999999999999999999999986

>PTZ00240 60S ribosomal protein P0; Provisional

Probab=99.84  E-value=9.2e-22  Score=190.57  Aligned_cols=76  Identities=29%  Similarity=0.464  Sum_probs=74.7

Q ss_pred             CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475        270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL  345 (346)
Q Consensus       270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~  345 (346)
                      .|+|++|++|+|||.+|++|+|+||+|++|+|.||++|||+||+|||.++++||+|.+|+|++||||+|+|+++|+
T Consensus       148 LGIpTkI~kGkIeI~~d~~v~k~Ge~V~~~~A~LL~~L~IkP~~~gl~l~~vyd~g~i~~~~vL~i~~e~~~~~~~  223 (323)
T PTZ00240        148 LNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVEVLSVWDRGVLFTREDLSMTEDVVEKMLM  223 (323)
T ss_pred             cCCCeEecCcEEEEecCeEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEeCCeecCHHHcCCCHHHHHHHHH
Confidence            4999999999999999999999999999999999999999999999999999999999999999999999999986

>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins

Probab=99.79  E-value=7e-20  Score=159.85  Aligned_cols=109  Identities=32%  Similarity=0.458  Sum_probs=102.2

Q ss_pred             ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      ++++|+.+++++++|+++++++++|+.||+. ++++|+|||||++||+++     +++.+.++++|+++++||++||.++
T Consensus        13 ~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KNtl~~~Al~~t-----~~~~~~~~l~G~~~~~f~~~~~~~~   87 (155)
T cd00379          13 LLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKLKVGKNTLMRRALKGT-----GFEELKPLLKGPTALAFTNEDPVEV   87 (155)
T ss_pred             HHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEEehHHHHHHHcCC-----CccchhhhCcCCEEEEEeCCChHHH
Confidence            5789999999999999999999999999987 899999999999999998     4678888999999999999999999


Q ss_pred             HHHHHhcccc---ccccCCCCCCCcEEEcCCCCCCCCCc
Q psy17475         81 REKLLENKVQ---APARNGAIAPCPVTIPAQNTGLGPEK  116 (346)
Q Consensus        81 ~k~l~~~k~~---~~Ar~G~iA~~dVvip~G~t~~~P~~  116 (346)
                      .++|.+++..   .++|+|.++ .+|+.|.+.+.+++.+
T Consensus        88 ~k~~~~~~k~~~~~~~k~g~~~-~~v~~~~~~~~l~~lp  125 (155)
T cd00379          88 AKVLKDFAKENKKLFAKGGVVA-GKVLDPAGVTALAKLP  125 (155)
T ss_pred             HHHHHHHHHhCCCceEEEEEEc-CEecCHHHHHHHhcCC
Confidence            9999999888   899999999 9999999998877665

In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho

>PRK04019 rplP0 acidic ribosomal protein P0; Validated

Probab=99.77  E-value=3.3e-19  Score=174.39  Aligned_cols=209  Identities=18%  Similarity=0.189  Sum_probs=170.6

Q ss_pred             HHHHHHHHhhCCcEEEEEehH--HHHHHHhccccC---CCC----cccccCcccCCeEEEEecCCHHHHHHHHHhccccc
Q psy17475         21 QFQNIRQSLEGLGVVLMGKNT--MMRKAIRGHLEH---NPG----LERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQA   91 (346)
Q Consensus        21 qlq~iR~~LR~~~~~~vgKNt--Lmr~AL~~~~~~---~~~----l~~L~~~l~G~~gliFTn~dp~ev~k~l~~~k~~~   91 (346)
                      .+.++-..|+|..-+.+.+..  -+.+.+.+....   ++|    .+-..+  .|+|     +.+|+.+...|.+.+.|+
T Consensus        70 ~~~~L~~~l~G~~alift~~dp~~v~k~l~~~~~~~~ak~G~iA~~divip--~G~t-----~~~P~~~~~~l~~lgipt  142 (330)
T PRK04019         70 DLEKLEDYLEGQVALIFTNMNPFKLYKLLEKSKTPAPAKPGDIAPEDIVVP--AGPT-----GFPPGPILSELQKLGIPA  142 (330)
T ss_pred             cHHHHHhhccCCEEEEEECCCHHHHHHHHHHcCCcccCCCCCCCCCeEEEc--CCCC-----CCCCcccHHHHHHcCCCe
Confidence            378888999998777776543  344455554221   111    122222  4544     789999999999999999


Q ss_pred             cccCCC--CCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHcCCCcceeee
Q psy17475         92 PARNGA--IAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNMLNISPFSYGL  167 (346)
Q Consensus        92 ~Ar~G~--iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L~I~p~~~~l  167 (346)
                      +++.|.  |+++++++++|+| ++|++.+.||+|||++...++++     ..+.+.|..  ++.      |+|.|.+|+.
T Consensus       143 ~i~~G~I~i~~~~~v~~~G~~-v~~~~a~lL~~LgI~p~~~~~~i-----~a~~~~G~~~~~~~------l~i~~e~~~~  210 (330)
T PRK04019        143 RIQKGKIVIKKDTVVAKAGEV-ISPELANVLQKLGIKPIEVGLDL-----KAAYEDGVIYTPEV------LAIDEEKYRS  210 (330)
T ss_pred             EecCCEEEEecCeEEecCCCC-cCHHHHHHHHHcCCCHHHhhhHH-----HHHHhcCCccCHHH------ccCCHHHHHH
Confidence            999999  9999999999999 99999999999999999999998     445556665  333      4999999999


Q ss_pred             eeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhccccccchhhHHH
Q psy17475        168 IIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKE  247 (346)
Q Consensus       168 ~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~e~ik~  247 (346)
                      .+..+|.++..++.+.-.+|++.+...+.+|+++|.+||++++|||+++++++|.+|+++++||+.+++=.-..-+.++.
T Consensus       211 ~i~~A~~~a~~Ls~~~~~pt~~tl~~~i~kA~~~a~aLa~~~~~~t~e~~~~il~kA~~~~~ala~~~~~~~~~~~~~~~  290 (330)
T PRK04019        211 DIQEAAQNAFNLAVNAAYPTPETLETLIQKAFREAKALAVEAGIVTPETADDILSKAVAQALALAAALADKDALDEELKE  290 (330)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998643234444544


Q ss_pred             H
Q psy17475        248 F  248 (346)
Q Consensus       248 ~  248 (346)
                      .
T Consensus       291 ~  291 (330)
T PRK04019        291 V  291 (330)
T ss_pred             h
Confidence            4

>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.72  E-value=8.2e-18  Score=136.88  Aligned_cols=83  Identities=27%  Similarity=0.381  Sum_probs=76.4

Q ss_pred             ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      ++++|+.+++++++|++++|++++|++||+. ++++|+|||||++||+++..+.    .|.++++|++|++||++||.++
T Consensus        16 ~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~KN~l~~~Al~~~~~~~----~l~~~l~G~~~~if~~~d~~~~   91 (100)
T PF00466_consen   16 LLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVVKNTLMKKALKNTGFEE----ALSPLLKGPTALIFSNEDPFEI   91 (100)
T ss_dssp             HHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEECSHHHHHHHHHHHHTSS----SSSCCTSSSEEEEEESSSHHHH
T ss_pred             HHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEecHHHHHHHHhcCcccc----CccccccCCEEEEEECCCHHHH
Confidence            5789999999999999999999999999986 8999999999999999984321    5889999999999999999999


Q ss_pred             HHHHHhcc
Q psy17475         81 REKLLENK   88 (346)
Q Consensus        81 ~k~l~~~k   88 (346)
                      .+++.+|.
T Consensus        92 ~k~l~~~~   99 (100)
T PF00466_consen   92 AKILKKFA   99 (100)
T ss_dssp             HHHHHHST
T ss_pred             HHHHHHhc
Confidence            99999874

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=99.66  E-value=1.7e-16  Score=141.58  Aligned_cols=84  Identities=21%  Similarity=0.263  Sum_probs=78.6

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNE   79 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~e   79 (346)
                      +++++|+.+++++++|++++|++++|+.||+. ++++|+|||||++|+++.     +++.|.++++|++|++||++||.+
T Consensus        15 ~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~~-----~~~~l~~~l~G~~al~fs~~d~~~   89 (172)
T PRK00099         15 EKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARRALEGT-----GFEGLDDLLKGPTAIAFSYEDPVA   89 (172)
T ss_pred             HHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcC-----CchhhhhhCcCCeEEEEeCCChHH
Confidence            36789999999999999999999999999975 799999999999999988     588999999999999999999999


Q ss_pred             HHHHHHhccc
Q psy17475         80 VREKLLENKV   89 (346)
Q Consensus        80 v~k~l~~~k~   89 (346)
                      +.+++.+|..
T Consensus        90 ~~k~l~~f~K   99 (172)
T PRK00099         90 AAKVLKDFAK   99 (172)
T ss_pred             HHHHHHHHHh
Confidence            9999998854

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=99.66  E-value=1.9e-16  Score=139.12  Aligned_cols=85  Identities=21%  Similarity=0.290  Sum_probs=79.1

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNE   79 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~e   79 (346)
                      +++++|+.+++++++|++++|++++|+.||+. ++++|+|||||++|++++     +++.+.++++|+++++||++||.+
T Consensus        14 ~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~~~V~KNtL~~~Al~~t-----~~~~l~~~l~G~~al~f~~~d~~~   88 (157)
T cd05797          14 EKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLAKRALEGT-----GFEDLDDLLKGPTAIAFSEEDPVA   88 (157)
T ss_pred             HHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCEEEEehhHHHHHHHhcC-----CchhhHhhCcCCEEEEEeCCChHH
Confidence            35789999999999999999999999999976 799999999999999988     578899999999999999999999


Q ss_pred             HHHHHHhcccc
Q psy17475         80 VREKLLENKVQ   90 (346)
Q Consensus        80 v~k~l~~~k~~   90 (346)
                      +.+++.+|...
T Consensus        89 ~~k~l~~f~k~   99 (157)
T cd05797          89 AAKVLKDFAKE   99 (157)
T ss_pred             HHHHHHHHHHh
Confidence            99999998663

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e

Probab=98.88  E-value=5.9e-10  Score=100.06  Aligned_cols=42  Identities=43%  Similarity=0.604  Sum_probs=41.2

Q ss_pred             CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcc
Q psy17475        270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISP  311 (346)
Q Consensus       270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P  311 (346)
                      .|+|++|++|+|+|.+|++|+++||+|++++|.||++|||+|
T Consensus       134 lgiptki~~G~i~i~~d~~v~k~G~~v~~~~A~lL~~l~i~P  175 (175)
T cd05795         134 LGIPTKIEKGKIEIISDVVVVKKGEKVGASEATLLNKLNIKP  175 (175)
T ss_pred             cCCceEEecCEEEEecCeEEecCCCCcCHHHHHHHHHcCCCC
Confidence            499999999999999999999999999999999999999998

P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.

>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4)

Probab=97.12  E-value=0.00015  Score=64.36  Aligned_cols=29  Identities=14%  Similarity=0.097  Sum_probs=27.1

Q ss_pred             CCcchhhhccccccccccceeeccCCccC
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVG  297 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~  297 (346)
                      +.|+|++|++|+|+|.+|++|+++||+|+
T Consensus       135 ~lgiptki~~G~I~i~~d~~v~k~G~~v~  163 (163)
T cd05796         135 KLGLPTKLKKGVITLEADYVVCEEGKVLT  163 (163)
T ss_pred             HcCCCeEEeCCEEEEecCcEEECCCCCCc
Confidence            45999999999999999999999999985

MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS

>KOG0816|consensus

Probab=96.84  E-value=0.00065  Score=61.87  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCccc
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIF  328 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~  328 (346)
                      +.+.|+++.+|.|.+.+|..|+++||++.+.+|.+|..+|++--++.|.+...|+..+-+
T Consensus       155 klglPt~lk~G~vtL~sdy~VCeEG~~Ld~rqA~ILKlfg~kma~Fkl~~~~~w~~s~~~  214 (223)
T KOG0816|consen  155 KLGLPTKLKKGVVTLLSDYTVCEEGDVLDPRQAKILKLFGKKMAKFKLAVKAYWSKSSGQ  214 (223)
T ss_pred             hhcCceeecCCeEEEecCceeecCCcccCHHHHHHHHHHhHhhHhheEEEEEEEcCccce
Confidence            348999999999999999999999999999999999999999999999999999875443

>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.76  E-value=0.00024  Score=56.77  Aligned_cols=45  Identities=18%  Similarity=0.108  Sum_probs=43.0

Q ss_pred             CCCccchhhHHHHHHHHHHHHHhhccccccchhhHHHHhcCchhH
Q psy17475        211 YPTVASVPHSIVNGFKNVLAVAAATEVDFEQAKTVKEFLKDPSKF  255 (346)
Q Consensus       211 ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~e~ik~~l~~p~~~  255 (346)
                      |||.++++|+|.+++.++.+..+.+.+.+.+...++++|.+++++
T Consensus         1 ~pT~~~i~~vl~aag~~v~~~~~~~~~~~l~~~~i~~li~~~~~~   45 (88)
T PF00428_consen    1 EPTAENIKKVLKAAGVEVEAIWLELFAKALEGKDIKELIANGSAG   45 (88)
T ss_dssp             S-SCCCHHHHHHHHTHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCchhHHHHHHHHHHHcCCcHHHHHhccccc
Confidence            899999999999999999999999999999999999999999988

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The 60S acidic ribosomal protein plays an important role in the elongation step of protein synthesis. This family includes archaebacterial L12, eukaryotic P0, P1 and P2 []. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 6, Alt a 12, Cla h 3, Cla h 4 and Cla h 12.; GO: 0003735 structural constituent of ribosome, 0006414 translational elongation, 0005622 intracellular, 0005840 ribosome; PDB: 3A1Y_C 3N2D_B 2LBF_A 3IZS_t 3IZR_t 1S4J_A 2JDL_C 2W1O_B 1S4H_A 2ZKR_g.

>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]

Probab=95.00  E-value=0.0021  Score=57.83  Aligned_cols=57  Identities=19%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCc
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGT  326 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~  326 (346)
                      ..++|+.+..|+|.+.++......|+.++|+. .++..|++.|..+|+.+.++||+|.
T Consensus       118 ~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~-~~~~~L~a~~~~~~~~~~a~~~~g~  174 (175)
T COG0244         118 VLGAAEVIALAKLPSKEELVVMLLGVLQAPAT-KLLRALKAVPDKVGLKLLAAYEKGV  174 (175)
T ss_pred             ccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHH-HHHHHHhccHHHHhhHHHHhhccCC
Confidence            66889999999999999999999999999999 9999999999999999999999986

>KOG4241|consensus

Probab=93.69  E-value=0.14  Score=47.23  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             cCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHHH
Q psy17475          3 VDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVR   81 (346)
Q Consensus         3 l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev~   81 (346)
                      ++++..+.++.+--+++..+=-.|..||.+ .+|+..-|++++.+++++     .++.|.+.+.||.+++|.. |+.+++
T Consensus        86 ~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~~ksygnkIlk~~~~~t-----~y~~l~plfvgnh~ill~~-d~~kik  159 (245)
T KOG4241|consen   86 REEFRVMAVCQFLPVPARDLWFARNQLRKKNIEFKSYGNKILKKIFDKT-----PYSSLNPLFVGNHAILLAK-DISKIK  159 (245)
T ss_pred             HhhhhheeeeecccCcHHHHHHHHHHHHhccchhhhchHHHHHHHHhcC-----chhhhhhheeccceEEEcC-ChHHHH
Confidence            467888999999999999999999999964 789999999999999987     5888999999999999975 677888


Q ss_pred             HHHHhcc
Q psy17475         82 EKLLENK   88 (346)
Q Consensus        82 k~l~~~k   88 (346)
                      +++...+
T Consensus       160 ~~lri~r  166 (245)
T KOG4241|consen  160 SILRITR  166 (245)
T ss_pred             HHHHHHh
Confidence            8877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
2zkr_g	317	Structure Of A Mammalian Ribosomal 60s Subunit With		1e-100
2zkr_g	317	Structure Of A Mammalian Ribosomal 60s Subunit With		1e-18
3izr_s	319	Localization Of The Large Subunit Ribosomal Protein		3e-74
3izr_s	319	Localization Of The Large Subunit Ribosomal Protein		6e-14
3izs_s	312	Localization Of The Large Subunit Ribosomal Protein		2e-64
3izs_s	312	Localization Of The Large Subunit Ribosomal Protein		2e-12
3o5h_M	312	Yeast 80s Ribosome. This Entry Consists Of The 60s		2e-63
3o5h_M	312	Yeast 80s Ribosome. This Entry Consists Of The 60s		2e-12
3u5i_q	312	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-56
3u5i_q	312	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-09
3cc2_G	348	The Refined Crystal Structure Of The Haloarcula Mar		6e-22
3j21_k	339	Promiscuous Behavior Of Proteins In Archaeal Riboso		8e-22
3j21_k	339	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-05
1jj2_G	348	Fully Refined Crystal Structure Of The Haloarcula M		8e-22
3a1y_G	284	The Structure Of Protein Complex Length = 284		2e-21
3a1y_G	284	The Structure Of Protein Complex Length = 284		6e-05
3jyw_8	118	Structure Of The 60s Proteins For Eukaryotic Riboso		4e-20
3jsy_A	213	N-Terminal Fragment Of Ribosomal Protein L10 From M		3e-16

>pdb|2ZKR|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/257 (69%), Positives = 213/257 (82%), Gaps = 2/257 (0%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           QL+D+YPKCF+VGADNVGS+Q Q IR SL G  VVLMGKNTMMRKAIRGHLE+NP LE+L
Sbjct: 19  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 78
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LPHI+GNVGFVFT+ DL E+R+ LL NKV A AR GAIAPC VT+PAQNTGLGPEKTSFF
Sbjct: 79  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 138
Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL I TKIS+GTIEI++DV ++K GD   + EATLLNMLNISPFS+GL+I+ V+D+G+I
Sbjct: 139 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSI 198
Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           + P++LDI  E L  +FLEGV  +ASVCL IGYPTVASVPHSI+NG+K VLA++  T+  
Sbjct: 199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258
Query: 239 FEQAKTVKEFLKDPSKF 255
           F  A+ VK FL DPS F
Sbjct: 259 FPLAEKVKAFLADPSAF 275

>pdb|2ZKR|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 275 RFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILD 334
           + SR     L+DV ++K GDKVG SEATLLNMLNISPFS+GL+I+ V+D+G+I+ P++LD
Sbjct: 146 KISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLD 205
Query: 335 IRPEDLRVKFLE 346
           I  E L  +FLE
Sbjct: 206 ITEETLHSRFLE 217

>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 141/259 (54%), Positives = 186/259 (71%), Gaps = 4/259 (1%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLE-- 58
           QL+DEY K  +  ADNVGS Q Q IR+ L G  +VLMGKNT++R+ I+ H ++    E  
Sbjct: 20  QLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFL 79
Query: 59  RLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTS 118
            L+P + GNVG +FT+GDL EVRE++ + KV APAR G +AP  V +P  NTGL P +TS
Sbjct: 80  ELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTS 139
Query: 119 FFQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSG 176
           FFQ L+IPTKI+KGT+EII  V ++K+GD   S E+ LL  L I PFSYGL+I  VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 177 TIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATE 236
           ++F+P++LD+  +DL  KF  GV+ +ASV L+I YPT+A+ PH  +NG+KNVLAVA  TE
Sbjct: 200 SVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETE 259
Query: 237 VDFEQAKTVKEFLKDPSKF 255
             +  A  +KE+LKDPSKF
Sbjct: 260 YSYPHADKIKEYLKDPSKF 278

>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 45/58 (77%)
Query: 287 VHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKF 344
           V ++K+GDKVG SE+ LL  L I PFSYGL+I  VYDSG++F+P++LD+  +DL  KF
Sbjct: 161 VELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKF 218

>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 312

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/257 (49%), Positives = 183/257 (71%), Gaps = 2/257 (0%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           + ++EY   FVVG DNV S+Q   +R+ L G  VVLMGKNTM+R+AIRG L   P  E+L
Sbjct: 17  EYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKL 76
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LP +KGNVGFVFT   L E++  ++ N+V APAR GA+AP  + + A NTG+ P KTSFF
Sbjct: 77  LPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFF 136
Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL +PTKI++GTIEI++DV ++  G+     EA+LLN+LNISPF++GL +  VYD+G +
Sbjct: 137 QALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQV 196
Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F   ILDI  E+L   F+  V+T+AS+ L+IGYPT+ SV H+++N +K++LAVA A    
Sbjct: 197 FPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYH 256
Query: 239 FEQAKTVKEFLKDPSKF 255
           + + + + + +++P K+
Sbjct: 257 YPEIEDLVDRIENPEKY 273

>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 275 RFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILD 334
           + +R     ++DV ++  G+KVG SEA+LLN+LNISPF++GL +  VYD+G +F   ILD
Sbjct: 144 KIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILD 203
Query: 335 IRPEDLRVKFL 345
           I  E+L   F+
Sbjct: 204 ITDEELVSHFV 214

>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit Length = 312

Iteration: 1
 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/257 (49%), Positives = 182/257 (70%), Gaps = 2/257 (0%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           + ++EY   FVVG DNV S+Q   +R+ L G  VVLMGKNTM+R+AIRG L   P  E+L
Sbjct: 17  EYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKL 76
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LP +KG VGFVFT   L E++  ++ N+V APAR GA+AP  + + A NTG+ P KTSFF
Sbjct: 77  LPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFF 136
Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL +PTKI++GTIEI++DV ++  G+     EA+LLN+LNISPF++GL +  VYD+G +
Sbjct: 137 QALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQV 196
Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F   ILDI  E+L   F+  V+T+AS+ L+IGYPT+ SV H+++N +K++LAVA A    
Sbjct: 197 FPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYH 256
Query: 239 FEQAKTVKEFLKDPSKF 255
           + + + + + +++P K+
Sbjct: 257 YPEIEDLVDRIENPEKY 273

>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit Length = 312

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 275 RFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILD 334
           + +R     ++DV ++  G+KVG SEA+LLN+LNISPF++GL +  VYD+G +F   ILD
Sbjct: 144 KIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILD 203
Query: 335 IRPEDLRVKFL 345
           I  E+L   F+
Sbjct: 204 ITDEELVSHFV 214

>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome B Length = 312

Iteration: 1
 Score =  214 bits (546), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/257 (45%), Positives = 169/257 (65%), Gaps = 2/257 (0%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           + ++EY   FVVG DNV S+Q   +R+ L G  VVLMGKNTM+R+AIRG L   P  E+L
Sbjct: 17  EYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKL 76
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFF 120
           LP +KGNVGFVFT   L E++  ++ N+V APAR GA+AP  + + A NTG+ P KTSFF
Sbjct: 77  LPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFF 136
Query: 121 QALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGTI 178
           QAL +PTKI++GTIEI++DV ++  G+     EA+LLN+LNISPF++GL +  VYD+G +
Sbjct: 137 QALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQV 196
Query: 179 FAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD 238
           F                        S+ L+IGYPT+ SV H+++N +K++LAVA A    
Sbjct: 197 FPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYH 256
Query: 239 FEQAKTVKEFLKDPSKF 255
           + + + + + +++P K+
Sbjct: 257 YPEIEDLVDRIENPEKY 273

>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome B Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 275 RFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIF 328
           + +R     ++DV ++  G+KVG SEA+LLN+LNISPF++GL +  VYD+G +F
Sbjct: 144 KIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVF 197

>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 348

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           ++++ Y    VV    + SRQ Q++R+ L G   + + +NT++ +A+    + + GLE L
Sbjct: 25  EMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALD---DVDDGLEDL 81
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSF 119
             +I G VG + T  +   + ++L  +K  AP   G +AP  + IP  +TG+ P      
Sbjct: 82  NGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGE 141
Query: 120 FQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGT 177
            Q++    +I +G+I++++D  +L  G+  S   + +LN L I P   GL ++ V+  G 
Sbjct: 142 LQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGV 201
Query: 178 IFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNV--LAVAAAT 235
           +F P+ L++  ++ R           ++ ++  YPT  + P  + +   N   LA+ AA 
Sbjct: 202 LFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAI 261
Query: 236 E 236
           E
Sbjct: 262 E 262

>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 10/293 (3%)
Query: 2   LVDEYPKCFVVGADNVGSRQFQNIRQSL-EGLGVVLMGKNTMMRKAIRGHLEH--NPGLE 58
           L+  YP   +V   ++ +     +R+ + E  G++ + +NT++  AI+   +    P LE
Sbjct: 18  LIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELE 77
Query: 59  RLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-T 117
           +L+ +I+G  G + T  +  ++ + L +N+  APA+ GA  P  V IPA  T L P    
Sbjct: 78  KLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIV 137
Query: 118 SFFQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDS 175
              QA+ IP +I +G + I  D  +LK G+  +   A +LN L I P   GL +  VY+ 
Sbjct: 138 GQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYED 197
Query: 176 GTIFAPQILDIRPEDLRVKFLEGVATLA-SVCLSIGYPTVASVPHSIVNGFKNVLAVAAA 234
           G I+ P +L I  E   +  L+     A ++ ++I YPT  ++   I   F N  A A A
Sbjct: 198 GIIYTPDVLAID-ESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLN--AKAVA 254
Query: 235 TEVDFEQAKTVKEFLKDPSKFLXXXXXXXXXXXXSNRSEERFSRNAETDLNDV 287
            E  +   +T+ + +    + +              +++E  S  A+  +  V
Sbjct: 255 VEAGYITKETISDIIGRAIRAMLLLAQQLPEDVLDEKTKELLSAQAQVSVAQV 307

>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 275 RFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILD 334
           R  R   T   D  +LK G+++ P  A +LN L I P   GL +  VY+ G I+ P +L 
Sbjct: 148 RIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLA 207
Query: 335 I 335
           I
Sbjct: 208 I 208

>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 348

Iteration: 1
 Score =  100 bits (250), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 123/241 (51%), Gaps = 8/241 (3%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           ++++ Y    VV    + SRQ Q++R+ L G   + + +NT++ +A+    + + GLE L
Sbjct: 25  EMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALD---DVDDGLEDL 81
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSF 119
             +I G VG + T  +   + ++L  +K  AP   G +AP  + IP  +TG+ P      
Sbjct: 82  NGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGE 141
Query: 120 FQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYDSGT 177
            Q++    +I +G+I++++D  +L  G+  S   + +LN L I P   GL ++ V+  G 
Sbjct: 142 LQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGV 201
Query: 178 IFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNV--LAVAAAT 235
           +F P+ L++  ++ R           ++ ++  YPT  + P  + +   N   LA+ AA 
Sbjct: 202 LFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAI 261
Query: 236 E 236
           E
Sbjct: 262 E 262

>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 12/257 (4%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSL-EGLGVVLMGKNTMMRKAIRGHLEH--NPGL 57
           +L+  YP   +V   ++ +     +R+ + E  G++ + +NT++  AI+   +    P L
Sbjct: 17  KLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPEL 76
Query: 58  ERLLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK- 116
           E+L+ +I    G + T  +  ++ + L +N+  APA+ GA+ P  V +PA  T L P   
Sbjct: 77  EKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPI 136
Query: 117 TSFFQALSIPTKISKGTIEIINDVHILKEGD--SSREATLLNMLNISPFSYGLIIKMVYD 174
               QAL IP +I KG + I  D  +LK G+  +   A +LN L I P   GL +  VY+
Sbjct: 137 VGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYE 196
Query: 175 SGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAA 234
            G ++ P +L I  ++      +      ++ ++I YPT  ++   I   F N      A
Sbjct: 197 DGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLN------A 250
Query: 235 TEVDFEQAKTVKEFLKD 251
             V  E     KE ++D
Sbjct: 251 KTVAIEAGYITKETIQD 267

>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 275 RFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILD 334
           R  +   T   D  +LK G+ + P  A +LN L I P   GL +  VY+ G ++ P +L 
Sbjct: 148 RIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLA 207
Query: 335 I 335
           I
Sbjct: 208 I 208

>pdb|3JYW|8 Chain 8, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 118

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 1   QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERL 60
           + ++EY   FVVG DNV S+Q   +R+ L G  VVLMGKNTM+R+AIRG L   P  E+L
Sbjct: 15  EYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKL 74
Query: 61  LPHIKGNVGFVFTRGDLNEVREKLLEN 87
           LP +KG VGFVFT   L E++  ++ N
Sbjct: 75  LPFVKGYVGFVFTNEPLTEIKNVIVSN 101

>pdb|3JSY|A Chain A, N-Terminal Fragment Of Ribosomal Protein L10 From Methanococ Jannaschii Length = 213

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 5/195 (2%)
Query: 2   LVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLE--HNPGLER 59
           L+   P   +V   +V + Q Q IR  +     + M +NT++ +A++   E  +NP L  
Sbjct: 15  LIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAE 74
Query: 60  LLPHIKGNVGFVFTRGDLNEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TS 118
           L  +++     + T  +  ++ + L ENK  AP R G IAPC + +   +TG+ P     
Sbjct: 75  LANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLG 134
Query: 119 FFQALSIPTKISKGTIEIIND--VHILKEGDSSREATLLNMLNISPFSYGLIIKMVYDSG 176
             +++ IP  I KG I I  D  V    E  S + A +L+ L I P   GL I  VY+ G
Sbjct: 135 ELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDG 194
Query: 177 TIFAPQILDIRPEDL 191
            I+ P +L +  E L
Sbjct: 195 IIYTPDVLKVDEEKL 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	100.0
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	100.0
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	100.0
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	100.0
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	100.0
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	100.0
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	100.0
3jsy_A	213	Acidic ribosomal protein P0 homolog; ribonucleopro	99.84
3u5i_q	312	A0, L10E, 60S acidic ribosomal protein P0; transla	99.83
3iz5_s	319	60S acidic ribosomal protein P0 (L10P); eukaryotic	99.83
3j21_k	339	Acidic ribosomal protein P0 homolog; archaea, arch	99.82
2zkr_g	317	60S acidic ribosomal protein P0; protein-RNA compl	99.81
1vq8_G	348	Acidic ribosomal protein P0 homolog; ribosome 50S,	99.79
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	99.69
1zav_A	180	50S ribosomal protein L10; ribosome structure and	99.69
3a1y_G	284	Acidic ribosomal protein P0; stalk, helix SPIN, ri	99.65
3sgf_H	165	50S ribosomal protein L10; typeii release factor b	99.55

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=100.00  E-value=4.1e-83  Score=616.03  Aligned_cols=264  Identities=46%  Similarity=0.798  Sum_probs=125.4

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      +++++|+++||++++|++++|+|+||+.||+.++++||||||||+|++++.++++++++|.++|+||+||+|||+||.++
T Consensus        17 e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v   96 (312)
T 3u5i_q           17 EYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEI   96 (312)
T ss_dssp             HHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHH
T ss_pred             HHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHH
Confidence            36789999999999999999999999999998999999999999999998777789999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475         81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML  158 (346)
Q Consensus        81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L  158 (346)
                      +++|.+|++++|||+|++||+||+||+|+|||+|+++||||+|||||||++|+|+|.+|++|||+||+  ++||+||++|
T Consensus        97 ~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~v~~~~A~lL~~l  176 (312)
T 3u5i_q           97 KNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLL  176 (312)
T ss_dssp             HHHHHTSSCCC---------------------------------------------------------------------
T ss_pred             HHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEEEeCCCCcCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475        159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD  238 (346)
Q Consensus       159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~  238 (346)
                      ||+|++|++++.++||+|.+|+|++|+||+|+|+++|++|++++++||+++||||++|+||+|.|||+|++||+++++|+
T Consensus       177 ~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~~~  256 (312)
T 3u5i_q          177 NISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYH  256 (312)
T ss_dssp             -------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC-----------------------------------
T ss_pred             CcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHhcCchhHHhhcCCCcC
Q psy17475        239 FEQAKTVKEFLKDPSKFLAAAAPAAA  264 (346)
Q Consensus       239 ~~~~e~ik~~l~~p~~~a~a~~~a~~  264 (346)
                      ||+++++|++|+||++|++|++++++
T Consensus       257 ~~~~~~ik~~la~p~a~a~aa~~a~~  282 (312)
T 3u5i_q          257 YPEIEDLVDRIENPEKYAAAAPAATS  282 (312)
T ss_dssp             --------------------------
T ss_pred             CccchhHHHHHhChhhhhcccccccc
Confidence            99999999999999999998775543

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=6.1e-81  Score=602.10  Aligned_cols=258  Identities=70%  Similarity=1.139  Sum_probs=17.1

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      +++++|+++||++++||+++|+++||+.||+.++++||||||||+||+++.+++|++++|.++|+|++||+|||+||.++
T Consensus        19 e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~~al~Ft~~Dp~~v   98 (317)
T 2zkr_g           19 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEI   98 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCcccccchhhhhhccCCCEEEEEECCCHHHH
Confidence            47899999999999999999999999999988999999999999999998777889999999999999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCchhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475         81 REKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML  158 (346)
Q Consensus        81 ~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L  158 (346)
                      +++|.+|++++|||+|++||+||+||+|+|+|+|+++||||+|||||||++|+|+|.+|++|||+||+  ++||+||++|
T Consensus        99 aK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d~~v~k~G~~v~~~~A~lL~~l  178 (317)
T 2zkr_g           99 RDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNML  178 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecceEEecCCCCcCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475        159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD  238 (346)
Q Consensus       159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~  238 (346)
                      ||+|++|+++++++||+|.+|+|++|+||+|+|+++|++|++++++||++++|||++|+||+|.|||+|+++|+++++|+
T Consensus       179 ~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~  258 (317)
T 2zkr_g          179 NISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT  258 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHhcCchhHHhh
Q psy17475        239 FEQAKTVKEFLKDPSKFLAA  258 (346)
Q Consensus       239 ~~~~e~ik~~l~~p~~~a~a  258 (346)
                      ||+++++|++|+||++|+++
T Consensus       259 ~~ea~~vk~~l~~~~~~~~a  278 (317)
T 2zkr_g          259 FPLAEKVKAFLADPSAFVAA  278 (317)
T ss_dssp             --CHHHHHTTTHHHHHHHHH
T ss_pred             hhhhhhHHHHHhccCccccc
Confidence            99999999999999999876

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.9e-73  Score=552.90  Aligned_cols=241  Identities=29%  Similarity=0.482  Sum_probs=189.9

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDL   77 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp   77 (346)
                      +++++|+++||++++|++++|+|+||+.||+. ++|+||||||||+|++++.+  ++|++++|.++|+||+||+|||+||
T Consensus        17 e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp   96 (339)
T 3j21_k           17 NLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNP   96 (339)
T ss_dssp             HHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCH
T ss_pred             HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCH
Confidence            36789999999999999999999999999987 89999999999999999853  5789999999999999999999999


Q ss_pred             HHHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHH
Q psy17475         78 NEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATL  154 (346)
Q Consensus        78 ~ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~L  154 (346)
                      .+++++|.+|++++|||+|++||+||+||+|+|+++|++ +||||+|||||||++|+|+|.+|++|||+||+  ++||+|
T Consensus        97 ~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~l  176 (339)
T 3j21_k           97 FKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANI  176 (339)
T ss_dssp             HHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSBCCHHHHHH
T ss_pred             HHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCCcCHHHHHH
Confidence            999999999999999999999999999999999999998 69999999999999999999999999999999  999999


Q ss_pred             HHHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhh
Q psy17475        155 LNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAA  234 (346)
Q Consensus       155 L~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~  234 (346)
                      |++|||+|++|++++.++||+|.+|+|++|+||+|+|++.|++|++++++||+++||||++|+||+|.|||+++++||++
T Consensus       177 L~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~  256 (339)
T 3j21_k          177 LNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE  256 (339)
T ss_dssp             HHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC---------------------------------------
T ss_pred             HHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc
Q psy17475        235 TEVDFEQ  241 (346)
Q Consensus       235 ~~~~~~~  241 (346)
                      ++|+||+
T Consensus       257 ~~~~~~e  263 (339)
T 3j21_k          257 AGYITKE  263 (339)
T ss_dssp             -------
T ss_pred             cCCCChh
Confidence            9999877

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=100.00  E-value=2e-69  Score=526.69  Aligned_cols=244  Identities=25%  Similarity=0.470  Sum_probs=14.0

Q ss_pred             ccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHHH
Q psy17475          2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEVR   81 (346)
Q Consensus         2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev~   81 (346)
                      ++++|+.+||++|+|++++|+++||+.||+.++|+||||||||+||+++..   ++++|.++|+|++||+||++||.+++
T Consensus        26 ~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~---~le~L~~~LkG~tal~Ft~~Dp~~va  102 (348)
T 1vq8_G           26 MIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD---GLEDLNGYITGQVGLIGTDDNPFSLF  102 (348)
T ss_dssp             HHHC---------------------------------CHHHHHHHHTC--------------------------------
T ss_pred             HHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc---chHHHHHhccCCEEEEEeCCCHHHHH
Confidence            578999999999999999999999999998899999999999999998732   48999999999999999999999999


Q ss_pred             HHHHhccccccccCCCCCCCcEEEcCCCCCCCCCch-hhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHHHHc
Q psy17475         82 EKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEKT-SFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLLNML  158 (346)
Q Consensus        82 k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~~-s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL~~L  158 (346)
                      ++|.+|++++|||+|++||+||+||+|+|+++|+++ ||||+|||||||++|+|+|.+|++|||+||+  ++||+||++|
T Consensus       103 K~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~v~~~~A~LL~~L  182 (348)
T 1vq8_G          103 QELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNEL  182 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCCcCHHHHHHHHHc
Confidence            999999999999999999999999999999999985 9999999999999999999999999999999  9999999999


Q ss_pred             CCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhhcccc
Q psy17475        159 NISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAATEVD  238 (346)
Q Consensus       159 ~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~  238 (346)
                      ||+|++|+++++++|++|.+|+|++|+||+|+|+++|++|++++++||++++|||++|+||+|.|||+|+++||++++|.
T Consensus       183 gI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~  262 (348)
T 1vq8_G          183 GIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIE  262 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHhc
Q psy17475        239 FEQAKTVKEFLK  250 (346)
Q Consensus       239 ~~~~e~ik~~l~  250 (346)
                      ||+  .+..+|+
T Consensus       263 ~~~--~~~~il~  272 (348)
T 1vq8_G          263 DPE--VVPDLVS  272 (348)
T ss_dssp             ------------
T ss_pred             Chh--hHHHHHH
Confidence            888  4444443

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=100.00  E-value=2e-66  Score=495.39  Aligned_cols=248  Identities=27%  Similarity=0.477  Sum_probs=169.1

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhcccc--CCCCcccccCcccCCeEEEEecCCH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLE--HNPGLERLLPHIKGNVGFVFTRGDL   77 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~--~~~~l~~L~~~l~G~~gliFTn~dp   77 (346)
                      +++++|+.+++++++|++++|+++||+.||+. ++++||||||||+|++++.+  .+|++++|.++|+|++|++||++||
T Consensus        17 ~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp   96 (284)
T 3a1y_G           17 KLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNP   96 (284)
T ss_dssp             HHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCH
T ss_pred             HHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCH
Confidence            36899999999999999999999999999976 89999999999999999864  4788999999999999999999999


Q ss_pred             HHHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHH
Q psy17475         78 NEVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATL  154 (346)
Q Consensus        78 ~ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~L  154 (346)
                      .+++++|.+|+.++|+|.|.+|++||++|+|+|++.|++ .++||+|||||+|++|+|+|.+|++||++||+  ++||+|
T Consensus        97 ~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~l~~~~a~l  176 (284)
T 3a1y_G           97 FKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANI  176 (284)
T ss_dssp             HHHHHHHHHCCCC-------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCCcCHHHHHH
Confidence            999999999999999999999999999999999998877 59999999999999999999999999999999  999999


Q ss_pred             HHHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHHHHHHHHHHHHhHHhhcCCCccchhhHHHHHHHHHHHHHhh
Q psy17475        155 LNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLEGVATLASVCLSIGYPTVASVPHSIVNGFKNVLAVAAA  234 (346)
Q Consensus       155 L~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~~~~a~~~~~~ls~~~~ypt~~s~~~~i~~a~~~~~ala~~  234 (346)
                      |++|||+|++|++++.++|++|.+|++++|+||+|++...|.+|+++|++||+++||||++|+||+|.|||++++|||++
T Consensus       177 L~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~  256 (284)
T 3a1y_G          177 LNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIE  256 (284)
T ss_dssp             ------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhhHHHHhc
Q psy17475        235 TEVDFEQAKTVKEFLK  250 (346)
Q Consensus       235 ~~~~~~~~e~ik~~l~  250 (346)
                      ++|.||+  .++.+|+
T Consensus       257 ~~~~~~~--~~~~~~~  270 (284)
T 3a1y_G          257 AGYITKE--TIQDIIG  270 (284)
T ss_dssp             TTCCCTT--THHHHHH
T ss_pred             cCCCChh--hHHHHHH
Confidence            9999888  4544543

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.9e-61  Score=441.38  Aligned_cols=194  Identities=30%  Similarity=0.501  Sum_probs=187.3

Q ss_pred             CccCCCCeEEEEEecCCCcHHHHHHHHHhhCCcEEEEEehHHHHHHHhccc--cCCCCcccccCcccCCeEEEEecCCHH
Q psy17475          1 QLVDEYPKCFVVGADNVGSRQFQNIRQSLEGLGVVLMGKNTMMRKAIRGHL--EHNPGLERLLPHIKGNVGFVFTRGDLN   78 (346)
Q Consensus         1 ~~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~~~~~vgKNtLmr~AL~~~~--~~~~~l~~L~~~l~G~~gliFTn~dp~   78 (346)
                      +++++|+++||++++|++++|+|+||+.||++++++||||||||+|++++.  +++|++++|.++|+|++||+|||+||.
T Consensus        14 e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~   93 (213)
T 3jsy_A           14 GLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPF   93 (213)
T ss_dssp             HHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHH
T ss_pred             HHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHH
Confidence            367899999999999999999999999999888999999999999999883  467899999999999999999999999


Q ss_pred             HHHHHHHhccccccccCCCCCCCcEEEcCCCCCCCCCc-hhhhhhcCCceEEecceEEEeeceeEeecCCc--hhHhHHH
Q psy17475         79 EVREKLLENKVQAPARNGAIAPCPVTIPAQNTGLGPEK-TSFFQALSIPTKISKGTIEIINDVHILKEGDS--SREATLL  155 (346)
Q Consensus        79 ev~k~l~~~k~~~~Ar~G~iA~~dVvip~G~t~~~P~~-~s~fq~LgIptki~kG~I~I~~d~~v~k~Ge~--~~~A~LL  155 (346)
                      +++++|.+|++++|||+|++||+||+||+|+|+++|++ +||||+|||||||++|+|+|.+|++|||+||+  ++||+||
T Consensus        94 ~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL  173 (213)
T 3jsy_A           94 KLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVL  173 (213)
T ss_dssp             HHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHH
T ss_pred             HHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCCcCHHHHHHH
Confidence            99999999999999999999999999999999999998 79999999999999999999999999999999  9999999


Q ss_pred             HHcCCCcceeeeeeeEEecCCccccCcccccChhHHHHH
Q psy17475        156 NMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVK  194 (346)
Q Consensus       156 ~~L~I~p~~~~l~i~~~~~~g~~~~~~~L~i~~e~~~~~  194 (346)
                      ++|||+|++|++.+.++||+|.+|+|++|+||+|+|+++
T Consensus       174 ~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~  212 (213)
T 3jsy_A          174 DRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLAD  212 (213)
T ss_dssp             HHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSC
T ss_pred             HHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhh
Confidence            999999999999999999999999999999999998653

>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=1.2e-22  Score=185.93  Aligned_cols=76  Identities=29%  Similarity=0.483  Sum_probs=73.7

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhh
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKF  344 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~  344 (346)
                      +.|+|++|++|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|++|+|++||||+|+|+++|
T Consensus       138 ~lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~  213 (213)
T 3jsy_A          138 SVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADI  213 (213)
T ss_dssp             HTTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTSCC
T ss_pred             HcCCceEeecCeEEEccceEEEecCCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhhhC
Confidence            4599999999999999999999999999999999999999999999999999999999999999999999998864

>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8

Probab=99.83  E-value=3.7e-22  Score=191.99  Aligned_cols=77  Identities=34%  Similarity=0.611  Sum_probs=30.3

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL  345 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~  345 (346)
                      +.|+|++|++|+|||.+|++|+|+||+||+++|.||++|||+||+|||.++++||+|++|+|++||||+|+|+++|+
T Consensus       138 ~Lgiptki~kG~I~I~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~  214 (312)
T 3u5i_q          138 ALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXX  214 (312)
T ss_dssp             ----------------------------------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHH
T ss_pred             HcCCCeEeeCCEEEEccceEEEeCCCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccc
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999986

>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.82  E-value=1.4e-21  Score=190.02  Aligned_cols=77  Identities=30%  Similarity=0.501  Sum_probs=73.9

Q ss_pred             CcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475        270 NRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE  346 (346)
Q Consensus       270 ~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~  346 (346)
                      .|+|++|++|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|.+|+|++||||+|+|+++|++
T Consensus       143 lgiptki~~G~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~  219 (339)
T 3j21_k          143 MGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQK  219 (339)
T ss_dssp             HTCCEEEETTEEEECSCEEEECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC--
T ss_pred             cCCCeEeccCeEEEccceEEEecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHH
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999863

>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.81  E-value=1.1e-21  Score=189.08  Aligned_cols=78  Identities=54%  Similarity=0.891  Sum_probs=0.0

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE  346 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~  346 (346)
                      +.|+|++|++|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|++|+|++||||+|+|+++|++
T Consensus       140 ~LgipTkI~kG~I~i~~d~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~  217 (317)
T 2zkr_g          140 ALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLE  217 (317)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HcCCCeEeeCCeEEEecceEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHH
Confidence            459999999999999999999999999999999999999999999999999999999999999999999999999864

>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...

Probab=99.79  E-value=4.7e-21  Score=186.55  Aligned_cols=78  Identities=26%  Similarity=0.481  Sum_probs=0.0

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhhC
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFLE  346 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~~  346 (346)
                      +.|+|++|.+|+|+|.+|++|+|+||+|++++|.||++|||+||+|||.++++||+|++|+|++|+||+|+|+++|++
T Consensus       144 ~LgIPTkI~kG~I~I~~d~~v~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~  221 (348)
T 1vq8_G          144 SVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQA  221 (348)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HcCCCEEeccCceEecCceEEeeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHH
Confidence            349999999999999999999999999999999999999999999999999999999999999999999999999863

>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A

Probab=99.69  E-value=3e-17  Score=146.39  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=78.4

Q ss_pred             ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC----cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEec-CC
Q psy17475          2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL----GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTR-GD   76 (346)
Q Consensus         2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~----~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn-~d   76 (346)
                      ++++|+.+++++|+|++++|++++|++||+.    ++++|+|||||++|+++.     +++.|.++|+|+++++||+ +|
T Consensus        18 ~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~-----~~~~L~~~l~G~~a~~fs~~~d   92 (180)
T 1zav_A           18 IFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNA-----EYEGYEEFLKGPTAVLYVTEGD   92 (180)
T ss_dssp             HHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHT-----TCCSCGGGCSSSEEEEEESSSC
T ss_pred             HHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccC-----ChhhHHHhCcCCEEEEEecCCC
Confidence            5789999999999999999999999999965    899999999999999987     6899999999999999999 99


Q ss_pred             HHHHHHHHHhccc
Q psy17475         77 LNEVREKLLENKV   89 (346)
Q Consensus        77 p~ev~k~l~~~k~   89 (346)
                      |.+++++|.+|..
T Consensus        93 p~~~ak~l~~f~k  105 (180)
T 1zav_A           93 PVEAVKIIYNFYK  105 (180)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998854

>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}

Probab=99.65  E-value=1.4e-17  Score=158.45  Aligned_cols=77  Identities=27%  Similarity=0.484  Sum_probs=35.1

Q ss_pred             CCcchhhhccccccccccceeeccCCccCccHHHHHhhcCCcceeeceeEEEEecCCcccCCCCcCCChHHHHHhhh
Q psy17475        269 SNRSEERFSRNAETDLNDVHILKEGDKVGPSEATLLNMLNISPFSYGLIIKMVYDSGTIFAPQILDIRPEDLRVKFL  345 (346)
Q Consensus       269 ~~~~~~~i~~g~i~I~~d~~~ik~G~~v~~s~a~lL~~L~I~P~~~gl~~~~vy~~g~i~~~~~L~i~~e~~~~~~~  345 (346)
                      +.|+|++|.+|+|+|.+|++|+++||+|++++|.||++|||+|++||+.++++|++|.+|+|++|+||+|++.++|+
T Consensus       142 ~LgIptki~~g~I~i~~d~~v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~  218 (284)
T 3a1y_G          142 ALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQ  218 (284)
T ss_dssp             -----------------------------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHH
T ss_pred             HCCCCeEEecCeeEeecceEEEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHH
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999885

>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*

Probab=99.55  E-value=5.9e-17  Score=142.71  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=77.2

Q ss_pred             ccCCCCeEEEEEecCCCcHHHHHHHHHhhCC-cEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEecCCHHHH
Q psy17475          2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEGL-GVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFTRGDLNEV   80 (346)
Q Consensus         2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~~-~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFTn~dp~ev   80 (346)
                      .+++|+.++++||+|++++|++++|+.||+. ++++|+|||||++|+++.     +++.|.++|+|+++++||++||.++
T Consensus        18 ~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~-----~~~~L~~~l~G~tai~fs~~dp~~~   92 (165)
T 3sgf_H           18 VAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGT-----PFECLKDAFVGPTLIAYSMEHPGAA   92 (165)
T ss_dssp             HHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTC-----TTTCTTCSTTCCSCCCEEEECSSCS
T ss_pred             HHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcC-----CcchhHHhCcCCEEEEEeCCCHHHH
Confidence            5789999999999999999999999999984 899999999999999985     7899999999999999999999999


Q ss_pred             HHHHHhccc
Q psy17475         81 REKLLENKV   89 (346)
Q Consensus        81 ~k~l~~~k~   89 (346)
                      .+++.+|..
T Consensus        93 aK~l~~f~K  101 (165)
T 3sgf_H           93 ARLFKEFAK  101 (165)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1zava1	177	Ribosomal protein L10 {Thermotoga maritima [TaxId:	99.28

>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=2.6e-12  Score=111.89  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=75.4

Q ss_pred             ccCCCCeEEEEEecCCCcHHHHHHHHHhhC----CcEEEEEehHHHHHHHhccccCCCCcccccCcccCCeEEEEe-cCC
Q psy17475          2 LVDEYPKCFVVGADNVGSRQFQNIRQSLEG----LGVVLMGKNTMMRKAIRGHLEHNPGLERLLPHIKGNVGFVFT-RGD   76 (346)
Q Consensus         2 ~l~~y~~v~iv~~~nv~s~qlq~iR~~LR~----~~~~~vgKNtLmr~AL~~~~~~~~~l~~L~~~l~G~~gliFT-n~d   76 (346)
                      .+++++.+++++|.|+++++++++|++||.    .++++|.||||||+|++++     +++.+.+++.|+++++|+ .+|
T Consensus        17 ~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t-----~~~~l~~~l~g~~a~~~~~~~d   91 (177)
T d1zava1          17 IFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNA-----EYEGYEEFLKGPTAVLYVTEGD   91 (177)
T ss_dssp             HHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHT-----TCCSCGGGCSSSEEEEEESSSC
T ss_pred             HHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcC-----CcchhhHHHhhccceeeeecCC
Confidence            578999999999999999999999999994    4799999999999999987     578899999999999996 579


Q ss_pred             HHHHHHHHHhccc
Q psy17475         77 LNEVREKLLENKV   89 (346)
Q Consensus        77 p~ev~k~l~~~k~   89 (346)
                      |....+++.+|..
T Consensus        92 ~~~~aK~l~~f~k  104 (177)
T d1zava1          92 PVEAVKIIYNFYK  104 (177)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             chhhhhHHHHHhh
Confidence            9999999988744