Psyllid ID: psy17503

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEEDEEPLEEN
cccEEEEEccccccccccHHHHHHHccccccccccccccccccccccEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEEccccccccEEcccccHHHHHHHHHHccEEcHHHHHHHHHHHHHHcccccccccHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccc
ccEEEEEEEccccHHHcHHHHHHHHHHccccccccccccccccccHEEEEEEcccccccEccEEEEEEcccccHHHcccccccccccccHcEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccEEEEEEHHHccEEEEcHHHHHHHHHHHHHcccccHccHcHHHEEcccccccHHHHHHHHHHHHHHHHHHHccEEEEcccccccccHHHHccc
MREIVHVQAGQCGNQIGAKFWEIISaehgidptgayhgdkdnqLERINVYYNeaqgrnvyvprailvdlepgtmdatrsgpygqifrpdnfvfgqsgagnnwakghytegaeLVDSVLDVVRKEAencdclqgfqlthslgggtgsgmGTLLISKIREefpdrimntysvvpspkvsdtvvepynATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWytgegmdemeFTEAESNMIDLVSEYQQYQEAtveedgefeedeepleen
mreivhvqagqcgnqiGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNeaqgrnvyVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFqlthslgggtgSGMGTLLISKIREEFPDRIMNTysvvpspkvsDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDgefeedeepleen
MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQlthslgggtgsgmgtllisKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQeatveedgefeedeepleeN
***IVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEF******MIDLV***************************
MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQE*******************
MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQY*********************
MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEEDEE*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLMSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEMExxxxxxxxxxxxxxxxxxxxxTVEEDGEFEEDEEPLEEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query277 2.2.26 [Sep-21-2011]
O17449 447 Tubulin beta-1 chain OS=M N/A N/A 0.707 0.438 0.918 3e-96
P02554 445 Tubulin beta chain OS=Sus yes N/A 0.707 0.440 0.903 1e-95
Q9D6F9 444 Tubulin beta-4A chain OS= yes N/A 0.707 0.441 0.903 2e-95
Q4R4X8 444 Tubulin beta-4A chain OS= N/A N/A 0.707 0.441 0.903 2e-95
P04350 444 Tubulin beta-4A chain OS= yes N/A 0.707 0.441 0.903 2e-95
Q3ZBU7 444 Tubulin beta-4A chain OS= no N/A 0.707 0.441 0.903 2e-95
P85108 445 Tubulin beta-2A chain OS= yes N/A 0.707 0.440 0.898 2e-95
Q7TMM9 445 Tubulin beta-2A chain OS= yes N/A 0.707 0.440 0.898 2e-95
Q4R5B3 445 Tubulin beta-2A chain OS= N/A N/A 0.707 0.440 0.898 2e-95
Q13885 445 Tubulin beta-2A chain OS= yes N/A 0.707 0.440 0.898 2e-95
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain OS=Manduca sexta PE=2 SV=1 Back     alignment and function desciption
 Score =  351 bits (901), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 181/197 (91%), Positives = 187/197 (94%), Gaps = 1/197 (0%)

Query: 1   MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
           MREIVH+QAGQCGNQIGAKFWEIIS EHGIDPTGAYHGD D QLERINVYYNEA G   Y
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGK-Y 59

Query: 61  VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60  VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
           VRKEAE+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIMNTYSVVPSPKVSDTV
Sbjct: 120 VRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTV 179

Query: 181 VEPYNATLSVHQLMSAT 197
           VEPYNATLSVHQL+  T
Sbjct: 180 VEPYNATLSVHQLVENT 196
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Manduca sexta (taxid: 7130)
>sp|P02554|TBB_PIG Tubulin beta chain OS=Sus scrofa PE=1 SV=1 Back     alignment and function description
>sp|Q9D6F9|TBB4A_MOUSE Tubulin beta-4A chain OS=Mus musculus GN=Tubb4a PE=1 SV=3 Back     alignment and function description
>sp|Q4R4X8|TBB4A_MACFA Tubulin beta-4A chain OS=Macaca fascicularis GN=TUBB4A PE=2 SV=1 Back     alignment and function description
>sp|P04350|TBB4A_HUMAN Tubulin beta-4A chain OS=Homo sapiens GN=TUBB4A PE=1 SV=2 Back     alignment and function description
>sp|Q3ZBU7|TBB4A_BOVIN Tubulin beta-4A chain OS=Bos taurus GN=TUBB4A PE=2 SV=1 Back     alignment and function description
>sp|P85108|TBB2A_RAT Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1 Back     alignment and function description
>sp|Q7TMM9|TBB2A_MOUSE Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1 Back     alignment and function description
>sp|Q4R5B3|TBB2A_MACFA Tubulin beta-2A chain OS=Macaca fascicularis GN=TUBB2A PE=2 SV=1 Back     alignment and function description
>sp|Q13885|TBB2A_HUMAN Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query277
221220532278 Tubulin beta-2C chain [Salmo salar] gi|2 0.935 0.931 0.882 1e-125
221220220287 Tubulin beta-2C chain [Salmo salar] gi|2 0.935 0.902 0.852 1e-124
351713115312 Tubulin beta-7 chain [Heterocephalus gla 0.935 0.830 0.771 1e-119
432101990336 Tubulin beta-4 chain [Myotis davidii] 0.859 0.708 0.725 1e-106
431922369264 Tubulin beta-4 chain [Pteropus alecto] 0.870 0.912 0.768 1e-104
109939814330 TUBB2A protein [Bos taurus] 0.916 0.769 0.65 2e-98
156389348 442 predicted protein [Nematostella vectensi 0.693 0.434 0.868 2e-96
301786965330 PREDICTED: tubulin beta chain-like [Ailu 0.916 0.769 0.641 2e-96
134142235267 beta tubulin [Rhodomonas salina] 0.787 0.816 0.686 4e-96
357628959 447 beta-tubulin [Danaus plexippus] 0.707 0.438 0.918 6e-95
>gi|221220532|gb|ACM08927.1| Tubulin beta-2C chain [Salmo salar] gi|221222332|gb|ACM09827.1| Tubulin beta-2C chain [Salmo salar] Back     alignment and taxonomy information
 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/263 (88%), Positives = 245/263 (93%), Gaps = 4/263 (1%)

Query: 1   MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
           MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG YHGD D QL+RINVYYNEA G   Y
Sbjct: 1   MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGK-Y 59

Query: 61  VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRA+LVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60  VPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
           VRK AE+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKGAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179

Query: 181 VEPYNATLSVHQLM---SATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYTGEGMDEM 237
           VEPYNATLSVHQL+     TFIGNST IQ+LFKRIS+QF AMFRRKAFLHWYTGEGMDEM
Sbjct: 180 VEPYNATLSVHQLVENTDETFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEM 239

Query: 238 EFTEAESNMIDLVSEYQQYQEAT 260
           EFTEAESNM DLVSEYQQYQ+AT
Sbjct: 240 EFTEAESNMNDLVSEYQQYQDAT 262

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota
>gi|221220220|gb|ACM08771.1| Tubulin beta-2C chain [Salmo salar] gi|221222310|gb|ACM09816.1| Tubulin beta-2C chain [Salmo salar] Back     alignment and taxonomy information
>gi|351713115|gb|EHB16034.1| Tubulin beta-7 chain [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|432101990|gb|ELK29810.1| Tubulin beta-4 chain [Myotis davidii] Back     alignment and taxonomy information
>gi|431922369|gb|ELK19460.1| Tubulin beta-4 chain [Pteropus alecto] Back     alignment and taxonomy information
>gi|109939814|gb|AAI18414.1| TUBB2A protein [Bos taurus] Back     alignment and taxonomy information
>gi|156389348|ref|XP_001634953.1| predicted protein [Nematostella vectensis] gi|156222042|gb|EDO42890.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|301786965|ref|XP_002928912.1| PREDICTED: tubulin beta chain-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|134142235|gb|ABO61461.1| beta tubulin [Rhodomonas salina] Back     alignment and taxonomy information
>gi|357628959|gb|EHJ78037.1| beta-tubulin [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query277
UNIPROTKB|P02554 445 P02554 "Tubulin beta chain" [S 0.736 0.458 0.777 5.4e-115
UNIPROTKB|E1C520 445 TUBB2B "Uncharacterized protei 0.736 0.458 0.772 1.1e-114
UNIPROTKB|G1K338 445 LOC768337 "Uncharacterized pro 0.736 0.458 0.772 1.1e-114
UNIPROTKB|P32882 445 P32882 "Tubulin beta-2 chain" 0.736 0.458 0.772 1.1e-114
UNIPROTKB|Q6B856 445 TUBB2B "Tubulin beta-2B chain" 0.736 0.458 0.772 1.1e-114
UNIPROTKB|E2RFJ7 445 TUBB2B "Uncharacterized protei 0.736 0.458 0.772 1.1e-114
UNIPROTKB|Q9BVA1 445 TUBB2B "Tubulin beta-2B chain" 0.736 0.458 0.772 1.1e-114
UNIPROTKB|F2Z5B2 445 TUBB2B "Uncharacterized protei 0.736 0.458 0.772 1.1e-114
MGI|MGI:1920960 445 Tubb2b "tubulin, beta 2B class 0.736 0.458 0.772 1.1e-114
RGD|1309427 445 Tubb2b "tubulin, beta 2B class 0.736 0.458 0.772 1.1e-114
UNIPROTKB|P02554 P02554 "Tubulin beta chain" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 846 (302.9 bits), Expect = 5.4e-115, Sum P(2) = 5.4e-115
 Identities = 161/207 (77%), Positives = 173/207 (83%)

Query:     1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
             MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct:     1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAG-NKY 59

Query:    61 VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
             VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct:    60 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119

Query:   121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
             VRKE+E+CDCLQGFQ                   KIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct:   120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179

Query:   181 VEPYNATLSVHQLMSATFIGNSTCIQD 207
             VEPYNATLSVHQL+  T    + CI +
Sbjct:   180 VEPYNATLSVHQLVENT--DETYCIDN 204
GO:0005515 "protein binding" evidence=IPI
GO:0005874 "microtubule" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
UNIPROTKB|E1C520 TUBB2B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|G1K338 LOC768337 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P32882 P32882 "Tubulin beta-2 chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6B856 TUBB2B "Tubulin beta-2B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFJ7 TUBB2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BVA1 TUBB2B "Tubulin beta-2B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5B2 TUBB2B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1920960 Tubb2b "tubulin, beta 2B class IIB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309427 Tubb2b "tubulin, beta 2B class IIb" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P85108TBB2A_RATNo assigned EC number0.89840.70750.4404yesN/A
Q13885TBB2A_HUMANNo assigned EC number0.89840.70750.4404yesN/A
Q6P9T8TBB4B_RATNo assigned EC number0.89840.70750.4404yesN/A
P68372TBB4B_MOUSENo assigned EC number0.89840.70750.4404yesN/A
P32882TBB2_CHICKNo assigned EC number0.89840.70750.4404yesN/A
P04350TBB4A_HUMANNo assigned EC number0.90350.70750.4414yesN/A
Q2KJD0TBB5_BOVINNo assigned EC number0.89340.70750.4414yesN/A
P99024TBB5_MOUSENo assigned EC number0.89340.70750.4414yesN/A
Q24560TBB1_DROMENo assigned EC number0.90860.70750.4384yesN/A
P02554TBB_PIGNo assigned EC number0.90350.70750.4404yesN/A
Q7JJU6TBB5_PANTRNo assigned EC number0.89340.70750.4414yesN/A
Q3KRE8TBB2B_RATNo assigned EC number0.89840.70750.4404yesN/A
P69897TBB5_RATNo assigned EC number0.89340.70750.4414yesN/A
Q27U48TBB1_GLOMMNo assigned EC number0.90860.70750.4384N/AN/A
P41937TBB4_CAEELNo assigned EC number0.87300.70750.4414yesN/A
P09206TBB3_CHICKNo assigned EC number0.89340.70750.4404yesN/A
P69893TBB5_CRIGRNo assigned EC number0.89340.70750.4414yesN/A
P09203TBB1_CHICKNo assigned EC number0.89340.70750.4404yesN/A
P69895TBB5_MACMUNo assigned EC number0.89340.70750.4414yesN/A
P68371TBB4B_HUMANNo assigned EC number0.89840.70750.4404yesN/A
Q9BVA1TBB2B_HUMANNo assigned EC number0.89840.70750.4404yesN/A
Q4R4X8TBB4A_MACFANo assigned EC number0.90350.70750.4414N/AN/A
O17449TBB1_MANSENo assigned EC number0.91870.70750.4384N/AN/A
Q767L7TBB5_PIGNo assigned EC number0.89340.70750.4414yesN/A
Q6GLE7TBB5_XENTRNo assigned EC number0.89340.70750.4414yesN/A
P09244TBB7_CHICKNo assigned EC number0.89340.70750.4414yesN/A
Q3ZBU7TBB4A_BOVINNo assigned EC number0.90350.70750.4414noN/A
Q9CWF2TBB2B_MOUSENo assigned EC number0.89840.70750.4404yesN/A
P07437TBB5_HUMANNo assigned EC number0.89340.70750.4414yesN/A
Q9D6F9TBB4A_MOUSENo assigned EC number0.90350.70750.4414yesN/A
P30883TBB4_XENLANo assigned EC number0.90350.70750.4404N/AN/A
Q7TMM9TBB2A_MOUSENo assigned EC number0.89840.70750.4404yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-153
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-146
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-142
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-118
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-70
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 5e-69
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 2e-66
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 3e-65
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 5e-64
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 2e-62
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 3e-61
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 6e-58
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 6e-56
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 9e-53
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 1e-49
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 3e-49
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 3e-48
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-47
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 2e-44
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 3e-33
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 6e-24
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 1e-16
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 4e-16
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 2e-14
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 6e-12
cd06060 493 cd06060, misato, Human Misato shows similarity wit 5e-09
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-08
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 5e-07
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 2e-06
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 4e-05
pfam10644103 pfam10644, Misat_Myo_SegII, Misato Segment II myos 5e-04
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 7e-04
cd02202 349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 0.002
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  432 bits (1114), Expect = e-153
 Identities = 173/204 (84%), Positives = 185/204 (90%), Gaps = 5/204 (2%)

Query: 2   REIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYV 61
           REIVH+QAGQCGNQIGAKFWE+IS EHG+DPTG Y GD D QLERINVY+NEA G   YV
Sbjct: 1   REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGK-YV 59

Query: 62  PRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 121
           PRAILVDLEPGTMD+ RSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 60  PRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 119

Query: 122 RKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTVV 181
           RKEAE+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIM T+SV PSPKVSDTVV
Sbjct: 120 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPSPKVSDTVV 179

Query: 182 EPYNATLSVHQLMS---ATF-IGN 201
           EPYNATLSVHQL+     TF I N
Sbjct: 180 EPYNATLSVHQLVENSDETFCIDN 203

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|220832 pfam10644, Misat_Myo_SegII, Misato Segment II myosin-like domain Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 277
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
KOG1374|consensus448 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1376|consensus407 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1375|consensus369 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06060 493 misato Human Misato shows similarity with Tubulin/ 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
KOG2530|consensus 483 99.96
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.93
cd02202 349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.83
PF14881180 Tubulin_3: Tubulin domain 99.65
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.61
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.53
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.42
TIGR00065 349 ftsZ cell division protein FtsZ. This family consi 99.4
PRK09330 384 cell division protein FtsZ; Validated 99.15
PRK13018 378 cell division protein FtsZ; Provisional 99.08
PF13809345 Tubulin_2: Tubulin like 96.8
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 96.8
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 82.87
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8e-99  Score=670.72  Aligned_cols=270  Identities=55%  Similarity=1.054  Sum_probs=261.0

Q ss_pred             CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503          1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG   80 (277)
Q Consensus         1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~   80 (277)
                      ||||||||+||||||||++||+++|.||||.++|.+++.++.++++.++||+|+.. +|||||||+|||||++|+.++++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~-~k~vPRaI~vDLEP~vid~v~~g   79 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASD-GKFVPRAILVDLEPGVIDQVRNG   79 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCC-CccccceEEEecCcchHhhhccC
Confidence            99999999999999999999999999999999999988888888999999999998 99999999999999999999999


Q ss_pred             CCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhc
Q psy17503         81 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEF  160 (277)
Q Consensus        81 ~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey  160 (277)
                      ++++||+|+|++++++|||||||+|||++|+++.+.++|+|||++|.||.||||+++||++|||||||||+||++|++||
T Consensus        80 ~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~ey  159 (443)
T COG5023          80 PYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEY  159 (443)
T ss_pred             ccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEeeCCCCCCCceeeecccchhhhhh-----------------------------------------------
Q psy17503        161 PDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL-----------------------------------------------  193 (277)
Q Consensus       161 ~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l-----------------------------------------------  193 (277)
                      |||.+.+|+|+|+|+.++++|||||++|++|.|                                               
T Consensus       160 pkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTts  239 (443)
T COG5023         160 PKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTS  239 (443)
T ss_pred             chhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhe
Confidence            999999999999999999999999999999998                                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy17503        194 --------------------------------------------------------------------------------  193 (277)
Q Consensus       194 --------------------------------------------------------------------------------  193 (277)
                                                                                                      
T Consensus       240 lRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG  319 (443)
T COG5023         240 LRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRG  319 (443)
T ss_pred             eecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------cccccccchHHHHHHHhhhhhhhhhhcccccccc
Q psy17503        194 ----------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLH  227 (277)
Q Consensus       194 ----------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh  227 (277)
                                                                    +++++|+|+|+|.++|+++.+||++||+||||||
T Consensus       320 ~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlh  399 (443)
T COG5023         320 DVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLH  399 (443)
T ss_pred             CCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHH
Confidence                                                          6789999999999999999999999999999999


Q ss_pred             cccCCCCCccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q psy17503        228 WYTGEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEEDEE  272 (277)
Q Consensus       228 ~y~~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~  272 (277)
                      ||++|||+++||+|||+++++|++||+++++++.+++++ +||||
T Consensus       400 wY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~-~~~~~  443 (443)
T COG5023         400 WYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE-DEEEM  443 (443)
T ss_pred             HHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh-hhccC
Confidence            999999999999999999999999999999998775444 55543

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-92
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-29
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-92
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-29
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-92
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-29
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-92
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-29
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 3e-92
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-29
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 3e-92
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 5e-29
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 3e-92
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-29
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 4e-92
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-29
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 4e-92
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 2e-29
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 4e-72
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 2e-26
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 4e-37
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 4e-10
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 5e-37
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 8e-10
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 5e-37
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 8e-10
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 5e-37
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 8e-10
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 5e-37
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 8e-10
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 5e-37
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-09
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 6e-37
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 8e-10
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 7e-37
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 8e-10
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 7e-37
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 8e-10
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 7e-37
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 8e-10
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 7e-37
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 8e-10
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 7e-37
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 8e-10
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 7e-34
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-33
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 2e-33
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 1e-23
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 2e-05
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/197 (80%), Positives = 169/197 (85%), Gaps = 1/197 (0%)
Query: 1   MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
           MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G N Y
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKY 59
Query: 61  VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60  VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119
Query: 121 VRKEAENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEFPDRIMNTYSVVPSPKVSDTV 180
           VRKE+E+CDCLQGFQ                   KIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179
Query: 181 VEPYNATLSVHQLMSAT 197
           VEPYNATLSVHQL+  T
Sbjct: 180 VEPYNATLSVHQLVENT 196
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query277
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-125
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 3e-33
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-124
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 6e-41
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-122
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 5e-31
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-120
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-33
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-119
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 1e-35
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  362 bits (931), Expect = e-125
 Identities = 84/196 (42%), Positives = 120/196 (61%), Gaps = 3/196 (1%)

Query: 1   MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQ--LERINVYYNEAQGRN 58
           MRE + +  GQ G QIG   WE+   EHGI P G    DK      +  N +++E     
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 59  VYVPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 118
            +VPRA+ VDLEP  +D  R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D VL
Sbjct: 61  -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVL 119

Query: 119 DVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSD 178
           D +RK A+ C  LQGF + HS GGGTGSG  +LL+ ++  ++  +    +S+ P+P+VS 
Sbjct: 120 DRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179

Query: 179 TVVEPYNATLSVHQLM 194
            VVEPYN+ L+ H  +
Sbjct: 180 AVVEPYNSILTTHTTL 195
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query277
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
3m89_A 427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.87
1w5f_A 353 Cell division protein FTSZ; complete proteome, GTP 99.87
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.85
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 99.85
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 99.85
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.85
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.83
2r75_1 338 Cell division protein FTSZ; GTPase, tubulin-like, 99.83
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.79
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.59
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 98.28
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 98.06
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 97.44
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=6e-90  Score=647.45  Aligned_cols=273  Identities=89%  Similarity=1.397  Sum_probs=255.5

Q ss_pred             CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCcccccccccccccccCCCccccceeeecCCCCcccccccC
Q psy17503          1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATRSG   80 (277)
Q Consensus         1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~~~   80 (277)
                      |||||+||+||||||||++||+++|.||+|+++|.++++++.+.+++++||+|+.. ++|+||||||||||++|++++++
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~fF~e~~~-~~~vpRavlvDlEp~vid~i~~g   79 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATG-NKYVPRAILVDLEPGTMDSVRSG   79 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCSCTHHHHTGGGTEEECST-TBEEECEEEEESSSHHHHHHHTS
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCCccccccchhhccccCCC-CccccceeEecCCchhhhhhhcc
Confidence            99999999999999999999999999999999999988888778889999999988 99999999999999999999999


Q ss_pred             CCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHhhc
Q psy17503         81 PYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEF  160 (277)
Q Consensus        81 ~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~dey  160 (277)
                      +++++|+|++++++++|||||||+|||+.|+++.+.++|+||+++|.||+||||+++||++||||||+|++|+++|+++|
T Consensus        80 ~~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~ey  159 (445)
T 3ryc_B           80 PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEY  159 (445)
T ss_dssp             TTGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHHC
T ss_pred             cccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEeeCCCCCCCceeeecccchhhhhh-----------------------------------------------
Q psy17503        161 PDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL-----------------------------------------------  193 (277)
Q Consensus       161 ~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l-----------------------------------------------  193 (277)
                      |||.+.+++|+|+|+.++++++|||++|++++|                                               
T Consensus       160 ~kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~s  239 (445)
T 3ryc_B          160 PDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTC  239 (445)
T ss_dssp             TTSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhccc
Confidence            999999999999998889999999999999988                                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy17503        194 --------------------------------------------------------------------------------  193 (277)
Q Consensus       194 --------------------------------------------------------------------------------  193 (277)
                                                                                                      
T Consensus       240 lRf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~RG  319 (445)
T 3ryc_B          240 LRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRG  319 (445)
T ss_dssp             HHSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCGGGSCEEEEEEEEEE
T ss_pred             cccCcccccCHHHHhhcccCCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCCCCCcceeeeeeeec
Confidence                                                                                            


Q ss_pred             -------------------------------------------cccccccchHHHHHHHhhhhhhhhhhccccccccccc
Q psy17503        194 -------------------------------------------MSATFIGNSTCIQDLFKRISDQFNAMFRRKAFLHWYT  230 (277)
Q Consensus       194 -------------------------------------------~s~~~l~NstsI~~~~~~i~~~f~~m~~~~aflh~y~  230 (277)
                                                                 +++++|+|+|+|.++|+++.+||++||+||||||||+
T Consensus       320 ~v~~kdv~~~i~~ik~k~~~~Fv~W~p~~~k~~i~~~pp~~~~~s~~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~  399 (445)
T 3ryc_B          320 RMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT  399 (445)
T ss_dssp             SCCHHHHHHHHHHHHHHTGGGBCTTSTTCEEEEEESSCCTTCSEEEEEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHH
T ss_pred             CCChHHHHHHHHHHHhhCcccCcccCCCceeeeeeccCCcccceeeeeecCcHHHHHHHHHHHHHHHhhhhcccchhhhh
Confidence                                                       5678999999999999999999999999999999999


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCc
Q psy17503        231 GEGMDEMEFTEAESNMIDLVSEYQQYQEATVEEDGEFEEDEEPL  274 (277)
Q Consensus       231 ~egm~~~~f~ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~~~~~  274 (277)
                      +|||||+||+||+++|++|+++|+++++++.+++++.+||++++
T Consensus       400 ~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~~~~~~~  443 (445)
T 3ryc_B          400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGED  443 (445)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC-----------
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhhhh
Confidence            99999999999999999999999999999887766665555543
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 277
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-102
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 5e-93
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 4e-84
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 2e-33
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 6e-33
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 2e-31
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  296 bits (760), Expect = e-102
 Identities = 179/217 (82%), Positives = 194/217 (89%), Gaps = 4/217 (1%)

Query: 1   MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKDNQLERINVYYNEAQGRNVY 60
           MREIVH+QAGQCGNQIGAKFWE+IS EHGIDPTG+YHGD D QLERINVYYNEA G   Y
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNK-Y 59

Query: 61  VPRAILVDLEPGTMDATRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 120
           VPRAILVDLEPGTMD+ RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV
Sbjct: 60  VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 119

Query: 121 VRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTYSVVPSPKVSDTV 180
           VRKE+E+CDCLQGFQLTHSLGGGTGSGMGTLLISKIREE+PDRIMNT+SVVPSPKVSDTV
Sbjct: 120 VRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTV 179

Query: 181 VEPYNATLSVHQLMS---ATFIGNSTCIQDLFKRISD 214
           VEPYNATLSVHQL+     T+  ++  + D+  R   
Sbjct: 180 VEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLK 216
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query277
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.83
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.82
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.81
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 97.74
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 97.45
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 96.85
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 96.35
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.3e-67  Score=458.03  Aligned_cols=210  Identities=42%  Similarity=0.803  Sum_probs=196.7

Q ss_pred             CeeEEEEecCCchhHHHHHHHHHHHHhhCCCCCCCccCCCc--ccccccccccccccCCCccccceeeecCCCCcccccc
Q psy17503          1 MREIVHVQAGQCGNQIGAKFWEIISAEHGIDPTGAYHGDKD--NQLERINVYYNEAQGRNVYVPRAILVDLEPGTMDATR   78 (277)
Q Consensus         1 M~EiItiq~Gq~GnqiG~~~W~~~~~e~~~~~~g~~~~~~~--~~~~~~~~~F~e~~~~~~~~pRavlvDle~~~i~~i~   78 (277)
                      ||||||||+||||||||.+||++++.||+++++|....+..  .....+++||++... ++|+||||+||+||++|++++
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~-~~~~pRavlvD~E~~vI~~i~   79 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA-GKHVPRAVFVDLEPTVIDEVR   79 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSC-TTTSCSCCEEESSHHHHHHHS
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccC-CccccceeEecCCcceeeeec
Confidence            99999999999999999999999999999999998766543  345678999999988 999999999999999999999


Q ss_pred             cCCCCCCCCCCCcccccCCCccccCccccCcCcchhhhhHHHHHhhhhccCCCCCeeEEeeCCCCcCCcchhHHHHHHHh
Q psy17503         79 SGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAENCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE  158 (277)
Q Consensus        79 ~~~~~~lf~~~~~i~~~~~~~nnwa~G~~~~g~e~~~~~~d~iR~~~E~cD~lqgf~~~~s~~GGtGSGlgs~lle~l~d  158 (277)
                      +++++++|+|++++++++|+|||||+|||..|+++.+.++|.|||++|+||+||||+++||++||||||+||+++++|+|
T Consensus        80 ~~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d  159 (245)
T d1tuba1          80 TGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV  159 (245)
T ss_dssp             GGGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHH
T ss_pred             cCcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccccceEEeeCCCCCCCceeeecccchhhhhh---cccccccchHHHHHHHhh
Q psy17503        159 EFPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQL---MSATFIGNSTCIQDLFKR  211 (277)
Q Consensus       159 ey~~~~~~~~~v~p~~~~~~~~v~~yN~~ls~~~l---~s~~~l~NstsI~~~~~~  211 (277)
                      +||++.+++++|+|++..++++|+|||++||+++|   .+++++-.|.++.+++.+
T Consensus       160 ~yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~  215 (245)
T d1tuba1         160 DYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR  215 (245)
T ss_dssp             HTTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHH
T ss_pred             hcccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHH
Confidence            99999999999999987789999999999999999   456666677888877665
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure