Psyllid ID: psy17511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460------
Protein Sequence
MGLKKEKCFIEQPSLTVGVTRRTFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHccccccccccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEcccEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHcHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHcHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mglkkekcfieqpsltvgvtrrtftnqkrfqppsimangahvKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKihqdinipvpepitlnshsdgpvtkkakreldndvsgtpvllltngpvpsneKLKLMISVVKPHIKQLVEHSNVLKMWITFMipkiedgnnfgvSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKihqdinipipepitlnshsdgpvtkkakreldndvsgtpvllltngpvpsneKLKLMISVVKPHIKQLVEHSNVLKMWITFMipkiedgnnfgvSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Flexible Loop (DISEMBL)
mglkkekcfieqpsltvgvtrrtftnqkrfqppsimangahVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQdinipvpepitlnshsdGPVTKKAKreldndvsgtpvllltngpvpsnEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIhqdinipipepitlnshsDGPVTKKAKreldndvsgtpvllltngpvpsnEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Low Complexity Region (SEG)
MGLKKEKCFIEQPSLTVGVTRRTFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Disordered region (IsUnstruct)
*******CFIEQPSLTVGVTRRTFTNQ**F***SIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVP****************************PVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPI*************************PVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFM**
Disordered Region (DISOPRED)
******KCFIEQPSLTVGVTRRT**********************EYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI****************************************VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI***************************************PVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Disordered Region (DISEMBL)
MGLKKEKCFIEQPSLTVGVTRRTFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Disordered Region (DISPRO)
**LKKEKCFIEQPSLTVGVTRRTFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEP***************************VLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEP***************************VLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLKKEKCFIEQPSLTVGVTRRTFTNQKRFQPPSIMANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSDGPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	466	2.2.26 [Sep-21-2011]
P61291	254	Proteasome activator comp	yes	N/A	0.465	0.854	0.475	1e-57
P61290	254	Proteasome activator comp	yes	N/A	0.465	0.854	0.475	1e-57
Q4R4V3	254	Proteasome activator comp	N/A	N/A	0.465	0.854	0.475	1e-57
P61289	254	Proteasome activator comp	yes	N/A	0.465	0.854	0.475	1e-57
Q5RFD3	254	Proteasome activator comp	yes	N/A	0.461	0.846	0.479	2e-57
Q5F3J5	254	Proteasome activator comp	yes	N/A	0.465	0.854	0.479	2e-57
P58238	249	Proteasome activator comp	N/A	N/A	0.459	0.859	0.322	9e-32
Q4U5R3	249	Proteasome activator comp	no	N/A	0.446	0.835	0.331	9e-32
Q06323	249	Proteasome activator comp	no	N/A	0.459	0.859	0.322	1e-31
P97371	249	Proteasome activator comp	no	N/A	0.459	0.859	0.322	2e-31

>sp|P61291|PSME3_PIG Proteasome activator complex subunit 3 OS=Sus scrofa GN=PSME3 PE=2 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 161/221 (72%), Gaps = 4/221 (1%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
           V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct: 15  VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query: 304 SHS--DGPVTKKAK-RELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
           SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct: 75  SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query: 361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
            +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct: 135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query: 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct: 195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

Subunit of the 11S REG-gamma (also called PA28-gamma) proteasome regulator, a doughnut-shaped homoheptamer which associates with the proteasome. 11S REG-gamma activates the trypsin-like catalytic subunit of the proteasome but inhibits the chymotrypsin-like and postglutamyl-preferring (PGPH) subunits. Facilitates the MDM2-p53/TP53 interaction which promotes ubiquitination- and MDM2-dependent proteasomal degradation of p53/TP53, limiting its accumulation and resulting in inhibited apoptosis after DNA damage. May also be involved in cell cycle regulation.
Sus scrofa (taxid: 9823)

>sp|P61290|PSME3_MOUSE Proteasome activator complex subunit 3 OS=Mus musculus GN=Psme3 PE=1 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 161/221 (72%), Gaps = 4/221 (1%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
           V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct: 15  VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query: 304 SHS--DGPVTKKAK-RELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
           SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct: 75  SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query: 361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
            +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct: 135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query: 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct: 195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

Subunit of the 11S REG-gamma (also called PA28-gamma) proteasome regulator, a doughnut-shaped homoheptamer which associates with the proteasome. 11S REG-gamma activates the trypsin-like catalytic subunit of the proteasome but inhibits the chymotrypsin-like and postglutamyl-preferring (PGPH) subunits. Facilitates the MDM2-p53/TP53 interaction which promotes ubiquitination- and MDM2-dependent proteasomal degradation of p53/TP53, limiting its accumulation and resulting in inhibited apoptosis after DNA damage. May also be involved in cell cycle regulation.

Mus musculus (taxid: 10090)

>sp|Q4R4V3|PSME3_MACFA Proteasome activator complex subunit 3 OS=Macaca fascicularis GN=PSME3 PE=2 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 161/221 (72%), Gaps = 4/221 (1%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
           V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct: 15  VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query: 304 SHS--DGPVTKKAK-RELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
           SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct: 75  SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query: 361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
            +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct: 135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query: 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct: 195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

Subunit of the 11S REG-gamma (also called PA28-gamma) proteasome regulator, a doughnut-shaped homoheptamer which associates with the proteasome. 11S REG-gamma activates the trypsin-like catalytic subunit of the proteasome but inhibits the chymotrypsin-like and postglutamyl-preferring (PGPH) subunits. Facilitates the MDM2-p53/TP53 interaction which promotes ubiquitination- and MDM2-dependent proteasomal degradation of p53/TP53, limiting its accumulation and resulting in inhibited apoptosis after DNA damage. May also be involved in cell cycle regulation.

Macaca fascicularis (taxid: 9541)

>sp|P61289|PSME3_HUMAN Proteasome activator complex subunit 3 OS=Homo sapiens GN=PSME3 PE=1 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 161/221 (72%), Gaps = 4/221 (1%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
           V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct: 15  VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query: 304 SHS--DGPVTKKAK-RELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
           SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct: 75  SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query: 361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
            +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct: 135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query: 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct: 195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

Subunit of the 11S REG-gamma (also called PA28-gamma) proteasome regulator, a doughnut-shaped homoheptamer which associates with the proteasome. 11S REG-gamma activates the trypsin-like catalytic subunit of the proteasome but inhibits the chymotrypsin-like and postglutamyl-preferring (PGPH) subunits. Facilitates the MDM2-p53/TP53 interaction which promotes ubiquitination- and MDM2-dependent proteasomal degradation of p53/TP53, limiting its accumulation and resulting in inhibited apoptosis after DNA damage. May also be involved in cell cycle regulation.

Homo sapiens (taxid: 9606)

>sp|Q5RFD3|PSME3_PONAB Proteasome activator complex subunit 3 OS=Pongo abelii GN=PSME3 PE=2 SV=1

 Score =  223 bits (569), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/223 (47%), Positives = 162/223 (72%), Gaps = 8/223 (3%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
           V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct: 15  VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query: 304 SHS--DGPVTKKAKRELDN---DVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEH 358
           SH   DGP  KK  R LD+      GT V ++ NG + SN++L  +I  VKP I+ L+E 
Sbjct: 75  SHDGLDGPTYKK--RRLDDCEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEK 132

Query: 359 SNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISK 418
            N +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK
Sbjct: 133 CNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSK 192

Query: 419 VAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           +AKYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct: 193 IAKYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

Subunit of the 11S REG-gamma (also called PA28-gamma) proteasome regulator, a doughnut-shaped homoheptamer which associates with the proteasome. 11S REG-gamma activates the trypsin-like catalytic subunit of the proteasome but inhibits the chymotrypsin-like and postglutamyl-preferring (PGPH) subunits. Facilitates the MDM2-p53/TP53 interaction which promotes ubiquitination- and MDM2-dependent proteasomal degradation of p53/TP53, limiting its accumulation and resulting in inhibited apoptosis after DNA damage. May also be involved in cell cycle regulation.

Pongo abelii (taxid: 9601)

>sp|Q5F3J5|PSME3_CHICK Proteasome activator complex subunit 3 OS=Gallus gallus GN=PSME3 PE=1 SV=1

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/221 (47%), Positives = 161/221 (72%), Gaps = 4/221 (1%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
           V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct: 15  VDSFRERITSEAEDLVANFFPKKLLELDGFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query: 304 SHS--DGPVTKKAKRE-LDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
           SH   DGP  KK K E  +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct: 75  SHDGLDGPNMKKRKLEDREETFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query: 361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
            +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct: 135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query: 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct: 195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome.

Gallus gallus (taxid: 9031)

>sp|P58238|PSME1_MACFA Proteasome activator complex subunit 1 OS=Macaca fascicularis GN=PSME1 PE=2 SV=1

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 120/214 (56%)

Query: 248 YVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSD 307
           + + + ++ E L+   FP+KI  L+  L        +++ +   ++IP+P+P+      +
Sbjct: 17  FREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDIPVPDPVKEKEKGE 76

Query: 308 GPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWIT 367
               ++ + + +             GPV  NEK+ +++  +KP IK ++E  N++  W+ 
Sbjct: 77  RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKILVLLQRLKPEIKDVIEQLNLVTTWLQ 136

Query: 368 FMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIAD 427
             IP+IEDGNNFGV++QE +   + S+ ++   F+ Q+S+YF  R   ++K AK PH+ D
Sbjct: 137 LQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGD 196

Query: 428 YRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           YRQ V ELDE EY  + L++ EIRN Y  L  I+
Sbjct: 197 YRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDII 230

Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome.

Macaca fascicularis (taxid: 9541)

>sp|Q4U5R3|PSME1_BOVIN Proteasome activator complex subunit 1 OS=Bos taurus GN=PSME1 PE=1 SV=1

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 117/208 (56%)

Query: 254 SQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSDGPVTKK 313
           ++ E L+   FP+KI  L+  L        +++ +   ++IP+P+P+      +    ++
Sbjct: 23  TKTENLLGSYFPKKISELDAFLKEPDLNEANLSNLKAPLDIPVPDPVKEKEKEERRKQQE 82

Query: 314 AKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKI 373
            + + +             GPV  NEK+ +++  VKP IK ++E  N++  W+   IP+I
Sbjct: 83  KEDKDEKKKGEDEDKGPPCGPVGCNEKIVVLLQRVKPEIKDVIEKLNLVTTWLQLQIPRI 142

Query: 374 EDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVK 433
           EDGNNFGV++QE +   + ++ ++   F+ Q+S+YF  R   ++K AK PH+ DYRQ V 
Sbjct: 143 EDGNNFGVAVQEKVFELMTALHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVH 202

Query: 434 ELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           ELDE EY  + L++ EIRN Y  L  I+
Sbjct: 203 ELDEAEYRDIRLMVMEIRNAYAVLYDII 230

Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome.

Bos taurus (taxid: 9913)

>sp|Q06323|PSME1_HUMAN Proteasome activator complex subunit 1 OS=Homo sapiens GN=PSME1 PE=1 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 120/214 (56%)

Query: 248 YVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSD 307
           + + + ++ E L+   FP+KI  L+  L        +++ +   ++IP+P+P+      +
Sbjct: 17  FREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDIPVPDPVKEKEKEE 76

Query: 308 GPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWIT 367
               ++ + + +             GPV  NEK+ +++  +KP IK ++E  N++  W+ 
Sbjct: 77  RKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQ 136

Query: 368 FMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIAD 427
             IP+IEDGNNFGV++QE +   + S+ ++   F+ Q+S+YF  R   ++K AK PH+ D
Sbjct: 137 LQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGD 196

Query: 428 YRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           YRQ V ELDE EY  + L++ EIRN Y  L  I+
Sbjct: 197 YRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDII 230

Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome.

Homo sapiens (taxid: 9606)

>sp|P97371|PSME1_MOUSE Proteasome activator complex subunit 1 OS=Mus musculus GN=Psme1 PE=2 SV=2

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 119/214 (55%)

Query: 248 YVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHSD 307
           + + + S+ E L+   FP+KI  L+  L        +++ +   ++IP+P+P+      +
Sbjct: 17  FREDLCSKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDIPVPDPVKEKEKEE 76

Query: 308 GPVTKKAKRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWIT 367
               ++ + + +             GPV  NEK+ +++  +KP IK + E  N++  W+ 
Sbjct: 77  RKKQQEKEEKEEKKKGDEDDKGPPCGPVNCNEKIVVLLQRLKPEIKDVTEQLNLVTTWLQ 136

Query: 368 FMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIAD 427
             IP+IEDGNNFGV++QE +   + ++ ++   F+ Q+S+YF  R   ++K AK PH+ D
Sbjct: 137 LQIPRIEDGNNFGVAVQEKVFELMTNLHTKLEGFHTQISKYFSERGDAVAKAAKQPHVGD 196

Query: 428 YRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           YRQ V ELDE EY  + L++ EIRN Y  L  I+
Sbjct: 197 YRQLVHELDEAEYQEIRLMVMEIRNAYAVLYDII 230

Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
307189304	279	Proteasome activator complex subunit 3 [	0.463	0.774	0.656	7e-81
307208984	266	Proteasome activator complex subunit 3 [	0.465	0.815	0.665	1e-80
350426714	249	PREDICTED: proteasome activator complex	0.461	0.863	0.663	2e-80
91091320	257	PREDICTED: similar to proteasome subunit	0.461	0.836	0.680	2e-80
340723580	249	PREDICTED: proteasome activator complex	0.461	0.863	0.659	5e-80
328776555	249	PREDICTED: proteasome activator complex	0.461	0.863	0.654	3e-79
383857611	275	PREDICTED: proteasome activator complex	0.465	0.789	0.651	3e-79
156550873	246	PREDICTED: proteasome activator complex	0.465	0.882	0.643	2e-78
332018793	248	Proteasome activator complex subunit 3 [	0.480	0.903	0.633	3e-78
357603055	247	hypothetical protein KGM_19897 [Danaus p	0.463	0.874	0.644	6e-77

>gi|307189304|gb|EFN73735.1| Proteasome activator complex subunit 3 [Camponotus floridanus]

 Score =  307 bits (787), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 145/221 (65%), Positives = 184/221 (83%), Gaps = 5/221 (2%)

Query: 244 LVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLN 303
           LV+EY D++K++AEEL++KGFPEKIV LN+LL T  F    ++ +HQD+N+PIP+PI LN
Sbjct: 42  LVQEYKDSLKTKAEELLIKGFPEKIVKLNELLETPGFSNRKLSDVHQDLNVPIPDPIVLN 101

Query: 304 SHSDGPVTKKAKRELDNDV---SGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
              D P +KK K  LDN+    SGT V++L NGPVP N+KL  +I +VKP+I+QL+E SN
Sbjct: 102 HSEDAPASKKLK--LDNNAEETSGTKVMVLPNGPVPCNKKLCDLILIVKPYIRQLLEDSN 159

Query: 361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
           +LKMWI+F+IPKIEDGNNFGVSIQED L+EIQSVESEAAAF+DQ+SRYF+SR K+ISKVA
Sbjct: 160 LLKMWISFLIPKIEDGNNFGVSIQEDTLSEIQSVESEAAAFFDQISRYFISRGKIISKVA 219

Query: 421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           KYPHI DYR+A++ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 220 KYPHIIDYRRAIQELDEKEYVSLWLVMCEVRNRYCSLHDLV 260

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208984|gb|EFN86184.1| Proteasome activator complex subunit 3 [Harpegnathos saltator]

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/218 (66%), Positives = 182/218 (83%), Gaps = 1/218 (0%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V+EY D++KS+AE+L++KGFPEKIV LN+LL T  F    ++ +HQD+N+PIP+PI LN 
Sbjct: 30  VQEYKDSLKSKAEQLLIKGFPEKIVKLNELLETPGFCNRKLSDVHQDLNVPIPDPIILNH 89

Query: 305 HSDGPVTKKAKRELD-NDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLK 363
             DGP +KK K E +  D SGT VL+L NGPVP N+ L  +I +VKP+I+QL+E SN+LK
Sbjct: 90  SEDGPASKKIKLENNVEDTSGTKVLVLPNGPVPCNKPLCDLIHIVKPYIRQLLEDSNLLK 149

Query: 364 MWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYP 423
           MWI+F+IPKIEDGNNFGVSIQED LAEIQSVESEAAAF+DQ+SRYF+SR K++SKVAKYP
Sbjct: 150 MWISFLIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRGKIVSKVAKYP 209

Query: 424 HIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           HI DYR+AV+ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 210 HIIDYRRAVQELDEKEYVSLWLVICEVRNRYCSLHDLV 247

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426714|ref|XP_003494521.1| PREDICTED: proteasome activator complex subunit 3-like [Bombus impatiens]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/220 (66%), Positives = 186/220 (84%), Gaps = 5/220 (2%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V+EY D++K++AE+L+LKGFPEKIV LN+LL T  F+   ++ +HQD+N+PIP+PI LN 
Sbjct: 13  VQEYKDSLKTKAEQLLLKGFPEKIVKLNELLETPGFRNRKLSNVHQDLNVPIPDPIILN- 71

Query: 305 HSDGPVTKKAKRELDN---DVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNV 361
           HS+   T K KR+LDN   D SGT V++L NGPVP N+ L  +I +VKP+I+QL+E SN+
Sbjct: 72  HSENESTAK-KRKLDNSIDDTSGTKVMVLPNGPVPCNKPLCDLIHIVKPYIRQLLEDSNL 130

Query: 362 LKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAK 421
           LKMWI+F+IPKIEDGNNFGVSIQED LAEIQSVESEAAAF+DQ+SRYF+SR K++SKVAK
Sbjct: 131 LKMWISFLIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRGKIVSKVAK 190

Query: 422 YPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           YPHI+DYR+AV+ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 191 YPHISDYRRAVQELDEKEYVSLWLVMCEVRNRYCSLHDLV 230

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091320|ref|XP_971490.1| PREDICTED: similar to proteasome subunit [Tribolium castaneum] gi|270013076|gb|EFA09524.1| hypothetical protein TcasGA2_TC011626 [Tribolium castaneum]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/219 (68%), Positives = 178/219 (81%), Gaps = 4/219 (1%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V EY D++K +AEEL+LKGFP  IV LN LL T QF+    T +HQ++NIP+P+PI LNS
Sbjct: 21  VLEYKDSLKKEAEELLLKGFPATIVKLNALLETPQFKNRKFTDVHQELNIPVPDPILLNS 80

Query: 305 HSDGPVTKKAKRELDNDVS--GTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVL 362
           H+D P  KKAK   DN +S  GT V++L  G VP+N+ L  ++  VKPHI++LVE SN +
Sbjct: 81  HTDLPPAKKAK--YDNSISQDGTKVMILPTGAVPTNKHLVELVEAVKPHIRKLVEDSNTM 138

Query: 363 KMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKY 422
           KMWI+FMIPKIEDGNNFGVSIQED LAE+QSVESEAAAF+DQ+SRYF+SRAKVISKVAKY
Sbjct: 139 KMWISFMIPKIEDGNNFGVSIQEDTLAEVQSVESEAAAFFDQISRYFISRAKVISKVAKY 198

Query: 423 PHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           PHI DYR+AV+ELDEKEYLSLWLV+CEIRNRY  L  IV
Sbjct: 199 PHIEDYRRAVQELDEKEYLSLWLVMCEIRNRYCALHDIV 237

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723580|ref|XP_003400167.1| PREDICTED: proteasome activator complex subunit 3-like [Bombus terrestris]

 Score =  304 bits (779), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 145/220 (65%), Positives = 186/220 (84%), Gaps = 5/220 (2%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V+EY D++K++AE+L+LKGFPEKIV LN+LL T  F+   ++ +HQD+N+PIP+PI LN 
Sbjct: 13  VQEYKDSLKTKAEQLLLKGFPEKIVKLNELLETPGFRNRKLSNVHQDLNVPIPDPIILN- 71

Query: 305 HSDGPVTKKAKRELDN---DVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNV 361
           HS+   T K KR++DN   D SGT V++L NGPVP N+ L  +I +VKP+I+QL+E SN+
Sbjct: 72  HSENESTTK-KRKIDNSIDDTSGTKVMVLPNGPVPCNKPLCDLIHIVKPYIRQLLEDSNL 130

Query: 362 LKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAK 421
           LKMWI+F+IPKIEDGNNFGVSIQED LAEIQSVESEAAAF+DQ+SRYF+SR K++SKVAK
Sbjct: 131 LKMWISFLIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRGKIVSKVAK 190

Query: 422 YPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           YPHI+DYR+AV+ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 191 YPHISDYRRAVQELDEKEYVSLWLVMCEVRNRYCSLHDLV 230

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776555|ref|XP_393883.3| PREDICTED: proteasome activator complex subunit 3-like [Apis mellifera] gi|380022641|ref|XP_003695148.1| PREDICTED: proteasome activator complex subunit 3-like [Apis florea]

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 185/220 (84%), Gaps = 5/220 (2%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V+EY D++K++AE+L+LKGFPEKIV LN+LL T  F    ++ +HQD+N+PIP+PI LN 
Sbjct: 13  VQEYKDSLKTKAEQLLLKGFPEKIVKLNELLETPGFCNRKLSDVHQDLNVPIPDPIILN- 71

Query: 305 HSDGPVTKKAKRELDN---DVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNV 361
           HS+   T K KR++DN   D SGT V++L NGPVP N+ L  +I +VKP+I+QL+E SN+
Sbjct: 72  HSENDSTTK-KRKVDNSIDDTSGTKVMVLPNGPVPCNKPLCDLIHIVKPYIRQLLEDSNL 130

Query: 362 LKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAK 421
           LKMWI+F+IPKIEDGNNFGVS+QED LAEIQSVESEAAAF+DQ+SRYF+SR K++SKVAK
Sbjct: 131 LKMWISFLIPKIEDGNNFGVSVQEDTLAEIQSVESEAAAFFDQISRYFISRGKIVSKVAK 190

Query: 422 YPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           YPHI+DYR+AV+ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 191 YPHISDYRRAVQELDEKEYVSLWLVMCEVRNRYCSLHDLV 230

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857611|ref|XP_003704298.1| PREDICTED: proteasome activator complex subunit 3-like [Megachile rotundata]

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/218 (65%), Positives = 181/218 (83%), Gaps = 1/218 (0%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V++Y D++K++AE+L+LKGFPEKIV LN+LL T  F    ++ +HQD+N+PIP+PI LN 
Sbjct: 39  VQDYKDSLKTKAEQLLLKGFPEKIVKLNELLETPGFCNRKLSDVHQDLNVPIPDPILLNH 98

Query: 305 HSDGPVTKKAKRELD-NDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLK 363
             D   TKK K +   ND SGT V++L NGPVP N+ L  +I +VKP+I+QL+E SN+LK
Sbjct: 99  SDDESATKKRKTDNKINDTSGTKVMVLPNGPVPCNKPLCDLIRIVKPYIRQLLEDSNLLK 158

Query: 364 MWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYP 423
           MWI+F+IPKIEDGNNFGVSIQED LAEIQSVESEAAAF+DQ+SRYF+SR K++SKVAKYP
Sbjct: 159 MWISFLIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRGKIVSKVAKYP 218

Query: 424 HIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           HI+DYR+AV+ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 219 HISDYRRAVQELDEKEYVSLWLVMCEVRNRYCSLHDLV 256

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550873|ref|XP_001604188.1| PREDICTED: proteasome activator complex subunit 3-like [Nasonia vitripennis]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 182/219 (83%), Gaps = 2/219 (0%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V+EY D++K++AE+LI+KGFPEKIV LN++L T  F   D+ ++HQD+N+PIP+PI LN 
Sbjct: 9   VQEYKDSLKTKAEQLIIKGFPEKIVKLNEILETPGFCNRDLKEVHQDLNVPIPDPIVLNH 68

Query: 305 HSDGPVTKKAKRE--LDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVL 362
             DGP  K+ K E  +D   SGT V++L NG VP N+ L  ++ +VKP+I+QL+E SN+L
Sbjct: 69  SEDGPNPKRQKLENSVDQLPSGTKVMVLPNGSVPCNKHLCDLLHIVKPYIRQLLEDSNLL 128

Query: 363 KMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKY 422
           KMWI+FMIPKIEDGNNFGVSIQED LAE+Q+VESEAAA++DQ+SRYF+SRAK++SKVAKY
Sbjct: 129 KMWISFMIPKIEDGNNFGVSIQEDTLAEVQAVESEAAAYFDQISRYFISRAKMVSKVAKY 188

Query: 423 PHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           PHI DYR+AV+ELDEKEY+SLWLV+CEIRNRY  L  +V
Sbjct: 189 PHIDDYRRAVQELDEKEYVSLWLVMCEIRNRYCSLHDLV 227

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018793|gb|EGI59354.1| Proteasome activator complex subunit 3 [Acromyrmex echinatior]

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/229 (63%), Positives = 185/229 (80%), Gaps = 5/229 (2%)

Query: 236 EKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIP 295
           EKE  +   V+EY +++ ++AEEL++KGFPEKIV LN+LL T  F    ++ +HQD+N+P
Sbjct: 3   EKENATTEKVQEYKESLITKAEELLVKGFPEKIVKLNELLETPGFCNRKLSDVHQDLNVP 62

Query: 296 IPEPITLNSHSDGPVTKKAKRELDND---VSGTPVLLLTNGPVPSNEKLKLMISVVKPHI 352
           IP+PI LN   + P TKK K  LDN+    SGT VL+L NG VP N+KL  +I +VKP+I
Sbjct: 63  IPDPIILNHSEEAPATKKLK--LDNNGEETSGTKVLILPNGSVPCNKKLCDLIHIVKPYI 120

Query: 353 KQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSR 412
           +QL+E SN+LKMWI+F+IPKIEDGNNFGVSIQED L+EIQSVESEAAAF+DQ+SRYF+SR
Sbjct: 121 RQLLEDSNLLKMWISFLIPKIEDGNNFGVSIQEDTLSEIQSVESEAAAFFDQISRYFISR 180

Query: 413 AKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
            K+ISKVAKYPHI DYR+A++ELDEKEY+SLWLV+CE+RNRY  L  +V
Sbjct: 181 GKIISKVAKYPHIIDYRRAIQELDEKEYVSLWLVMCEVRNRYCSLHDLV 229

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603055|gb|EHJ63616.1| hypothetical protein KGM_19897 [Danaus plexippus]

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 175/222 (78%), Gaps = 6/222 (2%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
           V++Y D++K +AE LI+KGFPEKIV LN+LL T  FQ  D++ +HQ++NIP+P P+  NS
Sbjct: 8   VQDYKDSLKQKAEHLIIKGFPEKIVKLNELLETSHFQNRDLSDVHQELNIPVPPPLNTNS 67

Query: 305 HSDGPVTKKAKRELDN-----DVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHS 359
             D P  K+ + +         V GT V  L NG VP N+ L  +I +VKPHI++LVE S
Sbjct: 68  Q-DEPSAKRQRLDTSEVSSVMTVEGTMVYALPNGTVPCNKPLSDLIHLVKPHIRELVEDS 126

Query: 360 NVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKV 419
           N+LKMWI+FMIPKIEDGNNFGVSIQED LAEIQSVESEAAAF+DQ+SRYF+SRAK++SKV
Sbjct: 127 NLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRAKIVSKV 186

Query: 420 AKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           AKYPHI DYR+AV+ELDEKEYLSLWLV+CEIRNRY  L  IV
Sbjct: 187 AKYPHIEDYRRAVQELDEKEYLSLWLVMCEIRNRYCSLHDIV 228

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	466
FB|FBgn0029133	245	REG "REG" [Drosophila melanoga	0.465	0.885	0.637	1.3e-66
UNIPROTKB|Q5F3J5	254	PSME3 "Proteasome activator co	0.465	0.854	0.479	2.9e-55
UNIPROTKB|E1BM26	254	PSME3 "Uncharacterized protein	0.465	0.854	0.475	2.9e-55
UNIPROTKB|P61289	254	PSME3 "Proteasome activator co	0.465	0.854	0.475	2.9e-55
UNIPROTKB|P61291	254	PSME3 "Proteasome activator co	0.465	0.854	0.475	2.9e-55
UNIPROTKB|Q4R4V3	254	PSME3 "Proteasome activator co	0.465	0.854	0.475	2.9e-55
MGI|MGI:1096366	254	Psme3 "proteaseome (prosome, m	0.465	0.854	0.475	2.9e-55
UNIPROTKB|Q5FVM2	254	Psme3 "Proteaseome (Prosome, m	0.465	0.854	0.475	2.9e-55
UNIPROTKB|Q5RFD3	254	PSME3 "Proteasome activator co	0.465	0.854	0.470	6.1e-55
ZFIN|ZDB-GENE-991110-19	256	psme3 "proteasome activator su	0.465	0.847	0.439	1.3e-50

FB|FBgn0029133 REG "REG" [Drosophila melanogaster (taxid:7227)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 139/218 (63%), Positives = 170/218 (77%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
             V+EY D++  +AE LI KGFPE IV LN+LLAT  F   +  ++HQD+NIP+  P+ + +
Sbjct:     9 VQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFEEVHQDLNIPVLPPLLVKN 68

Query:   305 HSDGPVTKKAKRE-LDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLK 363
               +   +   KR+ +D  VSG PV+ L  G VP N+ L  MI VVKP I++LVE SN+LK
Sbjct:    69 ELEDRDSLPTKRQRVDVIVSGQPVMGLPAGTVPCNKPLCEMIKVVKPIIRKLVEDSNLLK 128

Query:   364 MWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYP 423
             MWI+FMIPKIEDGNNFGVSIQED LAEIQ+VESEAAAF+DQ+SRYF+SRAKV+SKVAKYP
Sbjct:   129 MWISFMIPKIEDGNNFGVSIQEDTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYP 188

Query:   424 HIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             HI DYR+AV ELDEKEYLSLWLV+CE+RNRY  L  IV
Sbjct:   189 HIDDYRRAVVELDEKEYLSLWLVVCEVRNRYSSLHDIV 226

GO:0061133 "endopeptidase activator activity" evidence=IDA

GO:0004866 "endopeptidase inhibitor activity" evidence=IDA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:2000045 "regulation of G1/S transition of mitotic cell cycle" evidence=IMP

GO:0008537 "proteasome activator complex" evidence=IEA

GO:0005703 "polytene chromosome puff" evidence=IDA

GO:0005705 "polytene chromosome interband" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

UNIPROTKB|Q5F3J5 PSME3 "Proteasome activator complex subunit 3" [Gallus gallus (taxid:9031)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 106/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDGFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKRE-LDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK K E  +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPNMKKRKLEDREETFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0008537 "proteasome activator complex" evidence=IEA

UNIPROTKB|E1BM26 PSME3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKR-ELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0097371 "MDM2/MDM4 family protein binding" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0008537 "proteasome activator complex" evidence=IEA

UNIPROTKB|P61289 PSME3 "Proteasome activator complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKR-ELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0008537 "proteasome activator complex" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IDA;TAS

GO:0002039 "p53 binding" evidence=IDA

GO:0097371 "MDM2/MDM4 family protein binding" evidence=IDA

GO:0061133 "endopeptidase activator activity" evidence=IDA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010950 "positive regulation of endopeptidase activity" evidence=IDA

UNIPROTKB|P61291 PSME3 "Proteasome activator complex subunit 3" [Sus scrofa (taxid:9823)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKR-ELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0097371 "MDM2/MDM4 family protein binding" evidence=ISS

GO:0002039 "p53 binding" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=IEA

GO:0061133 "endopeptidase activator activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008537 "proteasome activator complex" evidence=IEA

UNIPROTKB|Q4R4V3 PSME3 "Proteasome activator complex subunit 3" [Macaca fascicularis (taxid:9541)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKR-ELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0002039 "p53 binding" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=ISS

GO:0097371 "MDM2/MDM4 family protein binding" evidence=ISS

MGI|MGI:1096366 Psme3 "proteaseome (prosome, macropain) 28 subunit, 3" [Mus musculus (taxid:10090)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKR-ELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0000502 "proteasome complex" evidence=IEA

GO:0002039 "p53 binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008537 "proteasome activator complex" evidence=IEA

GO:0010950 "positive regulation of endopeptidase activity" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=ISO

GO:0061133 "endopeptidase activator activity" evidence=ISO

GO:0061136 "regulation of proteasomal protein catabolic process" evidence=ISO

GO:0097371 "MDM2/MDM4 family protein binding" evidence=ISO

UNIPROTKB|Q5FVM2 Psme3 "Proteaseome (Prosome, macropain) 28 subunit, 3" [Rattus norvegicus (taxid:10116)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKR-ELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK +  E +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDECEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008537 "proteasome activator complex" evidence=IEA

UNIPROTKB|Q5RFD3 PSME3 "Proteasome activator complex subunit 3" [Pongo abelii (taxid:9601)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 104/221 (47%), Positives = 161/221 (72%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITL-N 303
             V  + + + S+AE+L+   FP+K++ L+  L      + D+T+IH D+N+P+P+PI L N
Sbjct:    15 VDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTN 74

Query:   304 SHS--DGPVTKKAKRE-LDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSN 360
             SH   DGP  KK + +  +    GT V ++ NG + SN++L  +I  VKP I+ L+E  N
Sbjct:    75 SHDGLDGPTYKKRRLDDCEEAFQGTKVFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCN 134

Query:   361 VLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISKVA 420
              +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VESEAA++ DQ+SRY+++RAK++SK+A
Sbjct:   135 TVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIA 194

Query:   421 KYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             KYPH+ DYR+ V E+DEKEY+SL L++ E+RN+Y+ L  ++
Sbjct:   195 KYPHVEDYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMI 235

GO:0002039 "p53 binding" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=ISS

GO:0097371 "MDM2/MDM4 family protein binding" evidence=ISS

ZFIN|ZDB-GENE-991110-19 psme3 "proteasome activator subunit 3" [Danio rerio (taxid:7955)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 98/223 (43%), Positives = 154/223 (69%)

Query:   245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNS 304
             V  + + + S+AE+L+   FP+K++ L+  L      + ++ +IH +IN+ +P+PI L  
Sbjct:    15 VDAFRERITSEAEDLVANFFPKKLLELDQFLKDPTINITELQEIHSEINLTVPDPILLTD 74

Query:   305 HSDGPVTKKAKREL------DNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEH 358
               DG   + AK+        D+ V GT V ++  G + SN KL  +I  VKP I+ L+E 
Sbjct:    75 IHDGIEGQNAKKRKFEDGAGDDKVGGTKVFVMPGGMMKSNGKLVELIEKVKPEIRTLMEK 134

Query:   359 SNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRAKVISK 418
              N +KMW+  +IP+IEDGNNFGVSIQE+ +AE+++VE EAA+F DQ+SRY+++RAK++SK
Sbjct:   135 CNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVEGEAASFLDQISRYYITRAKLVSK 194

Query:   419 VAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
             +AKYPH+ DYR+ V E+DEKEY+SL +++ E+RN+Y+ L  ++
Sbjct:   195 IAKYPHVEDYRRTVTEIDEKEYISLKIIVSELRNQYVTLHDMI 237

GO:0008537 "proteasome activator complex" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	466
pfam02252	150	pfam02252, PA28_beta, Proteasome activator pa28 be	1e-61
pfam02252	150	pfam02252, PA28_beta, Proteasome activator pa28 be	6e-56
pfam02251	64	pfam02251, PA28_alpha, Proteasome activator pa28 a	5e-14
pfam02251	64	pfam02251, PA28_alpha, Proteasome activator pa28 a	9e-13

>gnl|CDD|145416 pfam02252, PA28_beta, Proteasome activator pa28 beta subunit

 Score =  197 bits (502), Expect = 1e-61
 Identities = 70/130 (53%), Positives = 97/130 (74%)

Query: 332 NGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEI 391
            G VPSNEK+  ++  VKP I++L+E  N++K+WI   IP+IEDGNNFGVSIQE++L E+
Sbjct: 2   CGFVPSNEKIVALLEKVKPEIRELIEKCNLVKLWIQLQIPRIEDGNNFGVSIQEEVLEEL 61

Query: 392 QSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIR 451
             VE++A  F DQ+S+Y+  R  +++K AKYPH+ DYR+AV ELDEKEY+ L L++ EIR
Sbjct: 62  TRVETKAETFQDQISKYYSERGDLVAKAAKYPHVEDYREAVHELDEKEYIELRLIVLEIR 121

Query: 452 NRYLCLKTIV 461
           N Y  L  I+
Sbjct: 122 NNYAVLHDII 131

PA28 activator complex (also known as 11s regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha and beta subunits. This family represents the beta subunit. The activator complex binds to the 20S proteasome ana simulates peptidase activity in and ATP-independent manner. Length = 150

>gnl|CDD|145416 pfam02252, PA28_beta, Proteasome activator pa28 beta subunit

 Score =  182 bits (464), Expect = 6e-56
 Identities = 63/115 (54%), Positives = 88/115 (76%)

Query: 131 NGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEI 190
            G VPSNEK+  ++  VKP I++L+E  N++K+WI   IP+IEDGNNFGVSIQE++L E+
Sbjct: 2   CGFVPSNEKIVALLEKVKPEIRELIEKCNLVKLWIQLQIPRIEDGNNFGVSIQEEVLEEL 61

Query: 191 QSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLV 245
             VE++A  F DQ+S+Y+  R  +++K AKYPH+ DYR+AV ELDEKEY+ L L+
Sbjct: 62  TRVETKAETFQDQISKYYSERGDLVAKAAKYPHVEDYREAVHELDEKEYIELRLI 116

PA28 activator complex (also known as 11s regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha and beta subunits. This family represents the beta subunit. The activator complex binds to the 20S proteasome ana simulates peptidase activity in and ATP-independent manner. Length = 150

>gnl|CDD|145415 pfam02251, PA28_alpha, Proteasome activator pa28 alpha subunit

 Score = 66.1 bits (162), Expect = 5e-14
 Identities = 20/64 (31%), Positives = 37/64 (57%)

Query: 36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPV 95
          ++     KV  +  ++  +AE L+   FPEKI+ L+ LL      + D++++H  +NIP+
Sbjct: 1  VSPENKKKVDAFRQSLTKEAERLVSNFFPEKILELDALLKEPILNIHDLSQLHAPLNIPI 60

Query: 96 PEPI 99
          P+P 
Sbjct: 61 PDPP 64

PA28 activator complex (also known as 11s regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha and beta subunits. This family represents the alpha subunit. The activator complex binds to the 20S proteasome ana simulates peptidase activity in and ATP-independent manner. Length = 64

>gnl|CDD|145415 pfam02251, PA28_alpha, Proteasome activator pa28 alpha subunit

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPI 300
           V  +  ++  +AE L+   FPEKI+ L+ LL      + D++++H  +NIPIP+P 
Sbjct: 9   VDAFRQSLTKEAERLVSNFFPEKILELDALLKEPILNIHDLSQLHAPLNIPIPDPP 64

PA28 activator complex (also known as 11s regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha and beta subunits. This family represents the alpha subunit. The activator complex binds to the 20S proteasome ana simulates peptidase activity in and ATP-independent manner. Length = 64

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	466
KOG4470|consensus	246		100.0
KOG4470|consensus	246		100.0
PF02252	150	PA28_beta: Proteasome activator pa28 beta subunit;	100.0
PF02252	150	PA28_beta: Proteasome activator pa28 beta subunit;	100.0
PF02251	64	PA28_alpha: Proteasome activator pa28 alpha subuni	99.79
PF02251	64	PA28_alpha: Proteasome activator pa28 alpha subuni	99.67
PF08429	335	PLU-1: PLU-1-like protein; InterPro: IPR013637 Thi	80.88

>KOG4470|consensus

Probab=100.00  E-value=1.4e-73  Score=539.31  Aligned_cols=220  Identities=45%  Similarity=0.778  Sum_probs=209.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCCcccchhhccccCCCCCCCccCCCCC--CCCcccccccccCCC
Q psy17511        244 LVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPITLNSHS--DGPVTKKAKRELDND  321 (466)
Q Consensus       244 lVv~Fre~l~~eAE~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~~ipip~p~~~~~~~--d~~~~Kk~k~~~~~~  321 (466)
                      .|+.||++++.+||.++.++||+||+|||+||+++.+|.++++++|+++|||+|||....+..  +++..|+++-+  ..
T Consensus        10 kv~vfk~~l~~~ae~l~~~~fPkkvield~~Lkep~ln~~~l~~~~adl~ipvpdp~~~~~~~d~~~~~~~~~~~d--~~   87 (246)
T KOG4470|consen   10 KVVVFKEILFAKAERLLGKGFPKKVIELDALLKEPILNEANLTEKHADLNIPVPDPELLKNELDSDDQAVKKQRVD--EK   87 (246)
T ss_pred             hHHHHHHHHHHHHHHHHHccCChhHHHHHHHhcCcccchhhHhhhccccCCCCCCchhhcccCccccchhhhhhhh--hh
Confidence            589999999999999999999999999999999999999999999999999999999887763  44666665533  35


Q ss_pred             CCCCcccccCCCccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q psy17511        322 VSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAF  401 (466)
Q Consensus       322 ~~~~~~~~~p~g~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~  401 (466)
                      .+|.++.++|||.|+||++++.|++.|||+++.|+|+||+|+|||||+||||||||||||+|||+||++++++++++++|
T Consensus        88 ~~g~~~~~~p~g~v~cNekl~~l~~lvkP~i~~lvEk~nlv~tWIq~lIPkIEDGNnFGVaIQEkvle~v~aV~tk~eaF  167 (246)
T KOG4470|consen   88 KKGAPVFGLPSGTVPCNEKLAYLIQLVKPEIRKLVEKCNLVKTWIQLLIPKIEDGNNFGVAIQEKVLERVNAVKTKVEAF  167 (246)
T ss_pred             ccCCcccCCCCCCccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccCCccceeehHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhcC
Q psy17511        402 YDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFMT  465 (466)
Q Consensus       402 ~~~i~kY~~~Ra~~vsK~~KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI~k~~  465 (466)
                      +||||+||++||++|+|++|||||+|||++|+|+||++|.++|.+++|+||+|++|||||.||+
T Consensus       168 ~tqISrYf~~RgklV~K~aK~pHV~DYR~~v~e~DE~ey~~lrl~v~e~Rn~ya~L~dii~kN~  231 (246)
T KOG4470|consen  168 QTQISRYFSERGKLVTKAAKYPHVDDYRRLVHELDEKEYISLRLMVLELRNFYATLHDIILKNL  231 (246)
T ss_pred             HHHHHHHHHHHhHHHHHHhcCccHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>KOG4470|consensus

Probab=100.00  E-value=7e-70  Score=514.22  Aligned_cols=226  Identities=44%  Similarity=0.753  Sum_probs=210.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcccCCCCccchhhccccCCCCCCCccCCCCC--CCCccccc
Q psy17511         36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPITLNSHS--DGPVTKKA  113 (466)
Q Consensus        36 m~~~~~~kv~~fk~~l~~~Ae~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~nip~p~p~~~~~~~--d~~~~Kk~  113 (466)
                      |+.++.++|+.||++++.+||.++.++||+||+|||+||++|.||.++++++|+++|||+|||....+..  +.+..||+
T Consensus         3 ~~~e~~~kv~vfk~~l~~~ae~l~~~~fPkkvield~~Lkep~ln~~~l~~~~adl~ipvpdp~~~~~~~d~~~~~~~~~   82 (246)
T KOG4470|consen    3 LPIEAPKKVVVFKEILFAKAERLLGKGFPKKVIELDALLKEPILNEANLTEKHADLNIPVPDPELLKNELDSDDQAVKKQ   82 (246)
T ss_pred             CCcccchhHHHHHHHHHHHHHHHHHccCChhHHHHHHHhcCcccchhhHhhhccccCCCCCCchhhcccCccccchhhhh
Confidence            5678899999999999999999999999999999999999999999999999999999999998877764  34445555


Q ss_pred             cccccCCCCCCcccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHH
Q psy17511        114 KRELDNDVSGTPVLLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV  193 (466)
Q Consensus       114 k~~~~~~~~g~~v~~~~~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~v  193 (466)
                      +  .+...+|.|++++|||+|+||++|+.|++.|||+++.|+|+||+|+|||||+||||||||||||+|||+|++++++|
T Consensus        83 ~--~d~~~~g~~~~~~p~g~v~cNekl~~l~~lvkP~i~~lvEk~nlv~tWIq~lIPkIEDGNnFGVaIQEkvle~v~aV  160 (246)
T KOG4470|consen   83 R--VDEKKKGAPVFGLPSGTVPCNEKLAYLIQLVKPEIRKLVEKCNLVKTWIQLLIPKIEDGNNFGVAIQEKVLERVNAV  160 (246)
T ss_pred             h--hhhhccCCcccCCCCCCccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccCCccceeehHHHHHHHHHH
Confidence            5  33456899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q psy17511        194 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKG  263 (466)
Q Consensus       194 e~~a~~~~d~i~kY~~~Rak~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~  263 (466)
                      +++|++|+||||+||++||++|+|++|||||+|||++|+|+||++|+++|+|+...++.+..--+++.+.
T Consensus       161 ~tk~eaF~tqISrYf~~RgklV~K~aK~pHV~DYR~~v~e~DE~ey~~lrl~v~e~Rn~ya~L~dii~kN  230 (246)
T KOG4470|consen  161 KTKVEAFQTQISRYFSERGKLVTKAAKYPHVDDYRRLVHELDEKEYISLRLMVLELRNFYATLHDIILKN  230 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhcCccHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999988766666443

>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits

Probab=100.00  E-value=5.3e-54  Score=392.68  Aligned_cols=134  Identities=57%  Similarity=0.947  Sum_probs=118.7

Q ss_pred             CCCccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511        331 TNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFV  410 (466)
Q Consensus       331 p~g~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~  410 (466)
                      |||+|++|++|++|++.|||||++|+|.|++|+|||+|+||||||||||||+|||+++++|++++++|++|+|++++||+
T Consensus         1 ~~g~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~   80 (150)
T PF02252_consen    1 PCGFVPSNEKIVELLQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFS   80 (150)
T ss_dssp             ----B---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q psy17511        411 SRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFM  464 (466)
Q Consensus       411 ~Ra~~vsK~~KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI~k~  464 (466)
                      +||++++|++|||||+||+++|+|+|+++|++||++++||||+|++|||+|+||
T Consensus        81 ~Ra~~v~k~~K~p~v~DY~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN  134 (150)
T PF02252_consen   81 ARAKAVSKAAKYPHVEDYRQAVHELDEKEYISLRLIVLELRNNYATLYDIISKN  134 (150)
T ss_dssp             HHHHHHHHHHH-TTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999998

The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.

>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits

Probab=100.00  E-value=1.3e-47  Score=350.62  Aligned_cols=135  Identities=55%  Similarity=0.893  Sum_probs=117.2

Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511        130 TNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFV  209 (466)
Q Consensus       130 ~~g~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~kY~~  209 (466)
                      |||+|++|++|++|++.|||||++|+|+|++|+|||||+||||||||||||+|||+++++|++++++|++|+|+|++||+
T Consensus         1 ~~g~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~   80 (150)
T PF02252_consen    1 PCGFVPSNEKIVELLQKVKPEIRELIEKCNTVKMWIQLLIPKIEDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFS   80 (150)
T ss_dssp             ----B---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q psy17511        210 SRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGF  264 (466)
Q Consensus       210 ~Rak~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~f  264 (466)
                      +||++|+|++|||||+|||++|+|+|+++|++||++..--++.+..--++|.+.|
T Consensus        81 ~Ra~~v~k~~K~p~v~DY~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN~  135 (150)
T PF02252_consen   81 ARAKAVSKAAKYPHVEDYRQAVHELDEKEYISLRLIVLELRNNYATLYDIISKNF  135 (150)
T ss_dssp             HHHHHHHHHHH-TTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999998888887765

The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.

>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits

Probab=99.79  E-value=6.2e-20  Score=145.99  Aligned_cols=64  Identities=36%  Similarity=0.687  Sum_probs=46.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcccCCCCccchhhccccCCCCCCCc
Q psy17511         36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPVPEPI   99 (466)
Q Consensus        36 m~~~~~~kv~~fk~~l~~~Ae~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~nip~p~p~   99 (466)
                      |+++++.||++||++|+++||++|+++||+||.|||+||++++||++||+++|+++|||+|||+
T Consensus         1 v~~e~~~kV~~fr~~l~~eAE~Lv~~~fP~KI~eLd~lLk~~~fn~~dls~i~~~lnIPiPdP~   64 (64)
T PF02251_consen    1 VSPENKKKVDEFRQSLTKEAENLVSNFFPQKIVELDELLKSPSFNLSDLSSIHAPLNIPIPDPP   64 (64)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGG--S-GGGS------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhcCcccccccHHhhcCcCCCCCCCCC
Confidence            6789999999999999999999999999999999999999999999999999999999999984

The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.

>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits

Probab=99.67  E-value=5.2e-17  Score=129.30  Aligned_cols=58  Identities=40%  Similarity=0.718  Sum_probs=41.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCCcccchhhccccCCCCCCCc
Q psy17511        243 WLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINIPIPEPI  300 (466)
Q Consensus       243 ~lVv~Fre~l~~eAE~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~~ipip~p~  300 (466)
                      ..|..||++|+++||++|.++||+||.|||+||++++||+++|+++|+++|||+|||+
T Consensus         7 ~kV~~fr~~l~~eAE~Lv~~~fP~KI~eLd~lLk~~~fn~~dls~i~~~lnIPiPdP~   64 (64)
T PF02251_consen    7 KKVDEFRQSLTKEAENLVSNFFPQKIVELDELLKSPSFNLSDLSSIHAPLNIPIPDPP   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGG--S-GGGS------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHhcCcccccccHHhhcCcCCCCCCCCC
Confidence            4699999999999999999999999999999999999999999999999999999984

The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.

>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []

Probab=80.88  E-value=58  Score=33.31  Aligned_cols=48  Identities=29%  Similarity=0.571  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---hc-----cc-------ccCCCCcchhHHH
Q psy17511        137 NEKLKLMISVVK------PHIKQLVEHSNVLKMWITF---MI-----PK-------IEDGNNFGVSIQE  184 (466)
Q Consensus       137 N~~I~~l~~~vK------pei~~LiE~~n~VkmWIqL---~I-----Pk-------IEDGNNFGVsIQe  184 (466)
                      =+.|..+++.+.      ||+..|.+.+..|.-|-.-   .+     +-       ++.|..|||.+-|
T Consensus        85 l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpe  153 (335)
T PF08429_consen   85 LEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPE  153 (335)
T ss_pred             HHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChh
Confidence            356777777765      8888888888888888642   22     22       7889999999865

The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	466
1avo_B	140	Proteasome Activator Reg(Alpha) Length = 140		1e-28

>pdb|1AVO|B Chain B, Proteasome Activator Reg(Alpha) Length = 140

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 83/127 (65%)
Query: 335 VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV 394
           V  NEK+ +++  +KP IK ++E  N++  W+   IP+IEDGNNFGV++QE +   + S+
Sbjct: 2   VNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 61
Query: 395 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRY 454
            ++   F+ Q+S+YF  R   ++K AK PH+ DYRQ V ELDE EY  + L++ EIRN Y
Sbjct: 62  HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 121
Query: 455 LCLKTIV 461
             L  I+
Sbjct: 122 AVLYDII 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	466
1avo_B	140	11S regulator; proteasome activator, cell adhesion	1e-54
1avo_B	140	11S regulator; proteasome activator, cell adhesion	3e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1yar_O	237	Proteasome activator protein PA26; proteasome 20S,	4e-11
1yar_O	237	Proteasome activator protein PA26; proteasome 20S,	1e-09
1avo_A	60	11S regulator; proteasome activator, cell adhesion	3e-08
1avo_A	60	11S regulator; proteasome activator, cell adhesion	3e-07

>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 Length = 140

 Score =  178 bits (452), Expect = 1e-54
 Identities = 55/128 (42%), Positives = 83/128 (64%)

Query: 335 VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV 394
           V  NEK+ +++  +KP IK ++E  N++  W+   IP+IEDGNNFGV++QE +   + S+
Sbjct: 2   VNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 61

Query: 395 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRY 454
            ++   F+ Q+S+YF  R   ++K AK PH+ DYRQ V ELDE EY  + L++ EIRN Y
Sbjct: 62  HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAY 121

Query: 455 LCLKTIVH 462
             L  I+ 
Sbjct: 122 AVLYDIIL 129

>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 Length = 140

 Score =  161 bits (409), Expect = 3e-48
 Identities = 48/112 (42%), Positives = 74/112 (66%)

Query: 134 VPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSV 193
           V  NEK+ +++  +KP IK ++E  N++  W+   IP+IEDGNNFGV++QE +   + S+
Sbjct: 2   VNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSL 61

Query: 194 ESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLSLWLV 245
            ++   F+ Q+S+YF  R   ++K AK PH+ DYRQ V ELDE EY  + L+
Sbjct: 62  HTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLM 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 9e-12
 Identities = 69/463 (14%), Positives = 127/463 (27%), Gaps = 135/463 (29%)

Query: 79  FQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKRELD-NDVSGTPVLLLTNGPV--- 134
           F+  +    ++DI + V E                    D  DV   P  +L+   +   
Sbjct: 9   FETGEHQYQYKDI-LSVFED-------------AFVDNFDCKDVQDMPKSILSKEEIDHI 54

Query: 135 ---PSN-EKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEI 190
                       +   +    +++V+          F+   +     F   +   I  E 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQK---------FVEEVLRINYKF---LMSPIKTEQ 102

Query: 191 QSVESEAAAFYDQMSR----------YFVSRAKVISKVAKYPHIADYRQAVKELDEKEYL 240
           +        + +Q  R          Y VSR +   K+         RQA+ EL   + +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAKNV 153

Query: 241 SL---------WLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQD 291
            +         W+    +D   S     +      KI  LN          E V ++ Q 
Sbjct: 154 LIDGVLGSGKTWVA---LDVCLSYK---VQCKMDFKIFWLN---LKNCNSPETVLEMLQK 204

Query: 292 INIPI-PEPITLNSHSDGP-----VTKKAKRE-------------LDNDVS--------- 323
           +   I P   + + HS          +   R              L  +V          
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFN 263

Query: 324 -GTPVLLLT-NGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKM---WI---TFMIPK-IE 374
               +LL T    V           +   H    +    V  +   ++      +P+ + 
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 375 DGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSR-AKVISKVAKYPHIADYRQAVK 433
             N   +SI   I   I+    +  A +D        +   +I         A+YR+   
Sbjct: 324 TTNPRRLSI---IAESIR----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 434 EL-----DEK---EYLS-LW---------LVLCEIRNRYLCLK 458
            L             LS +W         +V+ ++    L  K
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 76/291 (26%)

Query: 29  RFQPPSIMANGAHVKVKEYVDNVKSQAEELIL-KGFPEKIVILND--------------- 72
           +  P     +     +K  + +++++   L+  K +   +++L +               
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 73  -LLATEQFQVEDVTKIHQDINIPVPEPITLNSHSDGPVTKKAKREL-----DNDVSGTPV 126
            LL T   QV D       ++      I+L+ HS   +T    + L     D      P 
Sbjct: 268 ILLTTRFKQVTDF------LSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPR 320

Query: 127 LLLTNGPVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDI 186
            +LT  P          +S++   I+   +       W      K+        +I E  
Sbjct: 321 EVLTTNP--------RRLSIIAESIR---DGLATWDNWKHVNCDKLT-------TIIESS 362

Query: 187 LAEIQSVESEAAAFYDQMSRYFVSRAKVISKVAKYPHIADYRQAVKELDEKEYLS-LWLV 245
           L  ++  E      +D++S  F   A + + +                     LS +W  
Sbjct: 363 LNVLEPAEYRK--MFDRLS-VFPPSAHIPTIL---------------------LSLIWFD 398

Query: 246 KEYVDT----VKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDI 292
               D      K     L+ K   E  + +  +    + ++E+   +H+ I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O Length = 237

 Score = 61.9 bits (149), Expect = 4e-11
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 25/148 (16%)

Query: 339 EKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEA 398
           E+L  ++   +     +   +  ++  I   IP+ ++ +N GV++Q  +L  I  +E + 
Sbjct: 71  EQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKT 130

Query: 399 AAFYDQ--------------MSRYFVSRAKVISKVAKYPHIADYRQ-----------AVK 433
               ++              +  Y  +R+ V  K+         +             ++
Sbjct: 131 LGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELR 190

Query: 434 ELDEKEYLSLWLVLCEIRNRYLCLKTIV 461
           ++D    L + L    +      +    
Sbjct: 191 QIDADFMLKVELATTHLSTMVRAVINAY 218

>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O Length = 237

 Score = 57.6 bits (138), Expect = 1e-09
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 138 EKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEA 197
           E+L  ++   +     +   +  ++  I   IP+ ++ +N GV++Q  +L  I  +E + 
Sbjct: 71  EQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKT 130

Query: 198 AAFYDQ--------------MSRYFVSRAKVISKVAKYPHIADYRQ-----------AVK 232
               ++              +  Y  +R+ V  K+         +             ++
Sbjct: 131 LGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELR 190

Query: 233 ELDEKEYLSLWLVKEYVDTV 252
           ++D    L + L   ++ T+
Sbjct: 191 QIDADFMLKVELATTHLSTM 210

>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 Length = 60

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 40 AHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI 93
          A  KV  + +++ ++ E L+   FP+KI  L+  L        +++ +   ++I
Sbjct: 7  AQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 60

>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1 Length = 60

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 245 VKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI 294
           V  + + + ++ E L+   FP+KI  L+  L        +++ +   ++I
Sbjct: 11  VDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	466
1avo_B	140	11S regulator; proteasome activator, cell adhesion	100.0
1avo_B	140	11S regulator; proteasome activator, cell adhesion	100.0
1avo_A	60	11S regulator; proteasome activator, cell adhesion	99.59
1avo_A	60	11S regulator; proteasome activator, cell adhesion	99.38
1yar_O	237	Proteasome activator protein PA26; proteasome 20S,	96.89
1yar_O	237	Proteasome activator protein PA26; proteasome 20S,	96.01

>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1

Probab=100.00  E-value=1.2e-53  Score=385.05  Aligned_cols=131  Identities=42%  Similarity=0.755  Sum_probs=129.8

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511        334 PVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRA  413 (466)
Q Consensus       334 ~v~~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~~~~~i~kY~~~Ra  413 (466)
                      +++||++|++|++.|||||++|+|.|++|+|||+|+||||||||||||+|||+|+++|++++++|++|+|++++||++||
T Consensus         1 ~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra   80 (140)
T 1avo_B            1 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERG   80 (140)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q psy17511        414 KVISKVAKYPHIADYRQAVKELDEKEYLSLWLVLCEIRNRYLCLKTIVHFM  464 (466)
Q Consensus       414 ~~vsK~~KyP~V~Dy~~av~e~Dek~~~~lr~~l~eiRn~Ya~l~DiI~k~  464 (466)
                      ++|+|++|||||+||+++|+|+|+++|++||++++||||+|+++||+|.||
T Consensus        81 ~~v~K~~k~p~v~Dy~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN  131 (140)
T 1avo_B           81 DAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKN  131 (140)
T ss_dssp             HHHHHHHHCTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998

>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1

Probab=100.00  E-value=3.5e-47  Score=342.81  Aligned_cols=132  Identities=39%  Similarity=0.725  Sum_probs=128.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17511        133 PVPSNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFYDQMSRYFVSRA  212 (466)
Q Consensus       133 ~v~~N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~d~i~kY~~~Ra  212 (466)
                      +++||++|+++++.|||||++|+|.|++|+|||||+||||||||||||+|||+|+++|++++++|++|+|+|++||++||
T Consensus         1 ~v~~N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra   80 (140)
T 1avo_B            1 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERG   80 (140)
T ss_dssp             CBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q psy17511        213 KVISKVAKYPHIADYRQAVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGF  264 (466)
Q Consensus       213 k~vsK~~KyPhVeDYr~av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~f  264 (466)
                      ++|+|++|||||+||+++|+|+|+++|++||++..--++.+...-+++.+.|
T Consensus        81 ~~v~K~~k~p~v~Dy~~~v~e~Dek~~~~lr~~~~elRn~Y~~l~D~i~KN~  132 (140)
T 1avo_B           81 DAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNF  132 (140)
T ss_dssp             HHHHHHHHCTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999988888887665

>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1

Probab=99.59  E-value=7.3e-16  Score=120.20  Aligned_cols=58  Identities=21%  Similarity=0.408  Sum_probs=56.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhcccCCCCccchhhccccCC
Q psy17511         36 MANGAHVKVKEYVDNVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI   93 (466)
Q Consensus        36 m~~~~~~kv~~fk~~l~~~Ae~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~ni   93 (466)
                      |+++++.+|+.||++|+++||++|+++||+||+|||+||++|+||++||+++|+++||
T Consensus         3 ~~~~~~~kv~~fk~~l~~eAE~ll~~~fP~KI~eln~LL~~~~f~~~dls~l~~~l~I   60 (60)
T 1avo_A            3 VQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI   60 (60)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGGCCSCTTSSCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHcccccccccHHHhccccCC
Confidence            6778999999999999999999999999999999999999999999999999999986

>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1

Probab=99.38  E-value=4.4e-13  Score=104.49  Aligned_cols=52  Identities=19%  Similarity=0.362  Sum_probs=49.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhccCCCcccchhhccccCC
Q psy17511        243 WLVKEYVDTVKSQAEELILKGFPEKIVILNDLLATEQFQVEDVTKIHQDINI  294 (466)
Q Consensus       243 ~lVv~Fre~l~~eAE~ll~~~fP~KI~eL~~lL~~~~f~~~~ls~i~~~~~i  294 (466)
                      ..|..|+++|+++||++|.++||+||+|||+||++++||+++|+++|+++||
T Consensus         9 ~kv~~fk~~l~~eAE~ll~~~fP~KI~eln~LL~~~~f~~~dls~l~~~l~I   60 (60)
T 1avo_A            9 AKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI   60 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSGGGCCSCTTSSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHcccccccccHHHhccccCC
Confidence            4599999999999999999999999999999999999999999999999886

>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O

Probab=96.89  E-value=0.01  Score=55.37  Aligned_cols=122  Identities=19%  Similarity=0.299  Sum_probs=89.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHHH---------------H
Q psy17511        337 SNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAA---------------F  401 (466)
Q Consensus       337 ~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~~---------------~  401 (466)
                      ..+.++.++.....++..+--...++++-|...||....-+|.||+||.-||+.|.+++.+.-.               +
T Consensus        69 vP~~v~~~L~~~Q~~~h~iY~~AEtIRTVIa~RIPElK~EDNLGV~VQ~aVLK~id~le~K~LGs~~~~g~Gg~p~~aGm  148 (237)
T 1yar_O           69 SPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGM  148 (237)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHTTSCCSSBCCTTCBCSSSCT
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhhhheeeeecccccccccccHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhH
Confidence            3578899999999999999999999999999999999999999999999999999999876533               1


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHH-----------HHHHHHHhhHHHHHHH-------HHHHHHHHhhHHHHHH
Q psy17511        402 YDQMSRYFVSRAKVISKVAKYPHIAD-----------YRQAVKELDEKEYLSL-------WLVLCEIRNRYLCLKT  459 (466)
Q Consensus       402 ~~~i~kY~~~Ra~~vsK~~KyP~V~D-----------y~~av~e~Dek~~~~l-------r~~l~eiRn~Ya~l~D  459 (466)
                      + ....||.+|+.+=.|+.--|.-+|           -.--+++.|......+       --.+...-|.|++=.-
T Consensus       149 y-a~ReYl~ARgsVEdKvLGk~~dd~~ktKggS~sPSvLlELrQiDaDallkvELsa~qlsT~iRsfiNAYalNWK  223 (237)
T 1yar_O          149 Y-ALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWK  223 (237)
T ss_dssp             T-HHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHhhccchHHHhcCCCCcccccccCCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            1 347899999999999964333332           1223445554443332       2335556688886543

>1yar_O Proteasome activator protein PA26; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Trypanosoma brucei} SCOP: a.24.8.1 PDB: 1ya7_O 1yau_O 1fnt_c 3jse_O 3jrm_O 3jtl_O 1z7q_c 3ipm_O

Probab=96.01  E-value=0.016  Score=53.96  Aligned_cols=91  Identities=18%  Similarity=0.248  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHH--------------H
Q psy17511        137 NEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFY--------------D  202 (466)
Q Consensus       137 N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~--------------d  202 (466)
                      ...++.++.....+++.+--...+|+.-|...||..-.-+|.||+||.-||+-|..+|.+.-..-              =
T Consensus        70 P~~v~~~L~~~Q~~~h~iY~~AEtIRTVIa~RIPElK~EDNLGV~VQ~aVLK~id~le~K~LGs~~~~g~Gg~p~~aGmy  149 (237)
T 1yar_O           70 PEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMY  149 (237)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHTTSCCSSBCCTTCBCSSSCTT
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhhheeeeecccccccccccHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhHH
Confidence            46788999999999999999999999999999999999999999999999999988887632211              1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhHH
Q psy17511        203 QMSRYFVSRAKVISKVAKYPHIADY  227 (466)
Q Consensus       203 ~i~kY~~~Rak~vsK~~KyPhVeDY  227 (466)
                      ....||.+|+.+=.|+..-|.=+|-
T Consensus       150 a~ReYl~ARgsVEdKvLGk~~dd~~  174 (237)
T 1yar_O          150 ALREYLSARSTVEDKLLGSVDAESG  174 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHhhccchHHHhcCCCCcccc
Confidence            4677999999999999886655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	466
g1avo.1	200	a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {	1e-66
g1avo.1	200	a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {	2e-61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	466
g1avo.1	200	Proteasome activator reg(alpha) {Human (Homo sapie	100.0
g1avo.1	200	Proteasome activator reg(alpha) {Human (Homo sapie	100.0
d1yaro1	228	Proteasome activator protein PA26 {Trypanosoma bru	96.61
d1yaro1	228	Proteasome activator protein PA26 {Trypanosoma bru	95.78

>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26 {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Proteasome activator
family: Proteasome activator
domain: Proteasome activator protein PA26
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.61  E-value=0.021  Score=51.01  Aligned_cols=122  Identities=19%  Similarity=0.299  Sum_probs=88.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCccCCCCCchhhHHHHHHHHHHHHHHHHH---------------HH
Q psy17511        337 SNEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAA---------------AF  401 (466)
Q Consensus       337 ~N~~I~~l~~~vKpei~~LiE~~~~vk~WI~l~IPkIEDGNNFGVsVQeevl~el~~v~~~a~---------------~~  401 (466)
                      ....++.++.....+++..--...++++-|...||..-.-+|.||+||.-||+-|..++.+.-               .+
T Consensus        60 vP~~v~~~L~~~Q~~~h~iY~~AEtIRTVIa~RIPElK~EDNLGV~VQ~AVLKmid~le~K~LGsge~~~~ggap~~~Gm  139 (228)
T d1yaro1          60 SPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGM  139 (228)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHTTSCCSSBCCTTCBCSSSCT
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhhhhheeeeecccccccccccHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhH
Confidence            357889999999999999999999999999999999999999999999999999999887532               11


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHH-----------HHHHHHHhhHHHHHHH-------HHHHHHHHhhHHHHHH
Q psy17511        402 YDQMSRYFVSRAKVISKVAKYPHIAD-----------YRQAVKELDEKEYLSL-------WLVLCEIRNRYLCLKT  459 (466)
Q Consensus       402 ~~~i~kY~~~Ra~~vsK~~KyP~V~D-----------y~~av~e~Dek~~~~l-------r~~l~eiRn~Ya~l~D  459 (466)
                      + ....||.+|+.+=.|+.--|.-+|           -.--+++.|......+       --.+...-|.|++=.-
T Consensus       140 y-a~ReYl~ARgsVEdKvLG~~~~d~~ktKggS~sPSvLlEL~QiDaDallKvELsa~qlsT~iRsfiNAYalNWK  214 (228)
T d1yaro1         140 Y-ALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWK  214 (228)
T ss_dssp             T-HHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHhhcccHHHHhcCCCCcccccccCCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            1 346799999999999965444332           1223445554443322       2345556688886543

>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26 {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Proteasome activator
family: Proteasome activator
domain: Proteasome activator protein PA26
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.78  E-value=0.01  Score=52.98  Aligned_cols=133  Identities=15%  Similarity=0.238  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCcchhHHHHHHHHHHHHHHHHHHHH--------------H
Q psy17511        137 NEKLKLMISVVKPHIKQLVEHSNVLKMWITFMIPKIEDGNNFGVSIQEDILAEIQSVESEAAAFY--------------D  202 (466)
Q Consensus       137 N~~I~~l~~~vKpei~~LiE~~n~VkmWIqL~IPkIEDGNNFGVsIQeevl~el~~ve~~a~~~~--------------d  202 (466)
                      ...++.++.....+++.+--...+|+.-|...||..-.-+|.||+||.-||+-|..+|.+.-..=              =
T Consensus        61 P~~v~~~L~~~Q~~~h~iY~~AEtIRTVIa~RIPElK~EDNLGV~VQ~AVLKmid~le~K~LGsge~~~~ggap~~~Gmy  140 (228)
T d1yaro1          61 PEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMY  140 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHTTSCCSSBCCTTCBCSSSCTT
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhhheeeeecccccccccccHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhHH
Confidence            46788999999999999999999999999999999999999999999999999988876532111              1


Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHH-----------HHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q psy17511        203 QMSRYFVSRAKVISKVAKYPHIADYRQ-----------AVKELDEKEYLSLWLVKEYVDTVKSQAEELILKGFPEKIVIL  271 (466)
Q Consensus       203 ~i~kY~~~Rak~vsK~~KyPhVeDYr~-----------av~E~Dek~y~~l~lVv~Fre~l~~eAE~ll~~~fP~KI~eL  271 (466)
                      ....||.+|+.+=.|+..-|.=+|-..           -++++|-.-...+.+-       .-+-...++.|+-.-.+.-
T Consensus       141 a~ReYl~ARgsVEdKvLG~~~~d~~ktKggS~sPSvLlEL~QiDaDallKvELs-------a~qlsT~iRsfiNAYalNW  213 (228)
T d1yaro1         141 ALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELA-------TTHLSTMVRAVINAYLLNW  213 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccHHHHhcCCCCcccccccCCCCCcHHHHHHHhhcHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhH
Confidence            467799999999999988766555332           2334443332222111       1112334566666666666


Q ss_pred             HHhhh
Q psy17511        272 NDLLA  276 (466)
Q Consensus       272 ~~lL~  276 (466)
                      ..|++
T Consensus       214 KKLIq  218 (228)
T d1yaro1         214 KKLIQ  218 (228)
T ss_dssp             HHHHC
T ss_pred             HHHcC
Confidence            66665