Psyllid ID: psy17515

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060-

VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKALSIEAQPVPDDGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLIP

cHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEcccccccccHHHHHHHcccccccHHHHHHcccccccEEEEEEcccccEEEEccccccccccccccccccccccEEEEccccccEEEEEEEccccccccHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEEccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccEEEEEEEcEEEccccccccccccEEEEEEccHHHHHHHccccccccccEEEEEEccccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEEEcccEEEEEEEccEEEEEEcccccEEEEEEEcccccEEEEHHHHHHHHHHccccccccccEEcccccccccccccccccccHHHHHHHHHHHccccccccEEEEccccccccccccEEEEEEEEEEEccccccccEEEEEEEcHHHHHHHHHHHHcccccccccccccccccccEEEEccccEEEEcccccccccccccccHHHHHHHHHcccccEEEEEEEccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHEEccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc

cHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccHccccccccccccccEEEEccccccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccEEEccccccccccccccEEEEcccccEEEEEccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccEEEEccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHcccHHHccccccEEEEEEEEcccccccccHHHccccEEEEEEEEEEcccccccccEEEEEEEEccccHHHHHHHccccEccccEEEEEEccccEEEEccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEEEEEccccEEEEEEEcEEEEEEcccccEEEEEEEcccccEEEEEEcccEEEEEEEEcccccEEEEEcccccccccccHcccccHHccHHHHHHHHHHcccccccEEEEcccccccccccEEEEEEEEEEEEcccccccEEEEEEEEcHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccEEEEEccccccccEEccccHHHHHHHHHcccEEEEEEEEHHHHccccccccccccccccHHHHHHEEHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccHHHHHEEHHccccccccccHcccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHcccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccHHHccHHcccccccHHHHcccccHHHHHHccccccccccHHHHHHHHHHHHcc

VKNWALKFGIDLWEfgrhftnvNEIQRKYqdrdatvvRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSqksdsssnvkyldsrkllhipihekptsanEMYFQVNRHfdqcavntsyssvllpealakdpdeQILNAIKwsehldpvflnnyetdpslswqyfgstlgflrrypamkwpvdgvppqdlhdfrssawfveaatspKDIVILLDASSTLSTKHRNLARATINVILDtlgsndfvnIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYnrtnqgcqcnqaimlvssgppsafkevfkhynwphmpVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARplimyqtehplywssvypggktntllasdvkegkLMVSVstpvfdkrnytTRAANLLgvaavdvpiQQIQKlvpqyklgpngysfvvnnngriiyhpdfrplyverlkpnynnvdlseveivdsevyprdnnsLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSrrhryfyhpiegtpyslglalpdgyglYEVLKEEEIKLSAVNATRSGLIRwkehvgsvpgsgaefAEQNRRAMDAIWFKRAvdqhniepdsfvfsvphnsgprgekplvtashavfiedkghrapamVVGLQFQHSALASHFINItsactagpgckktcasddldcyvldnngfIILSEKYEqtglffgqadgtiMDSLVQdgiykrvpmydnqgvcedskandsdsaRLLKVRVYCEynyaddhnfqspeEQVLHFLARSIqpgwkwmslrprspqenssdksLVQSLVFDAMvteapvysdydqnydtdqsfpesdmdgdgdesMDLEAAMDETMSevtksqpidpppiadnetpppptitstspptkttktspprlhartcqkradlfilqpgrlnnsglfnppfsvqkiphsnlILLVVDtlcpcgskalsieaqpvpddgcklsethhmyrrkpnkcvnyhpeeieikqcgsgsrfhlsFPLLLAILYRTLIP

VKNWALKFGIDLWEFGRHFTNVNEIqrkyqdrdatvvrKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAAlsqksdsssnvkylDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDAsstlstkhrnLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALanvkgdnvANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVstpvfdkrnYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSeveivdsevyprDNNSLLLDLRHDMIDQkegetefkvklhydEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGvcedskandsdsaRLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSqpidpppiadnetpppptitstspptkttktspprlhartCQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKAlsieaqpvpddGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLIP

VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPesdmdgdgdesmdLEAAMDETMSEVTKSQPIDPPPIADNEtpppptitstspptkttktsppRLHARTCQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKALSIEAQPVPDDGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLIP

***WALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILE*******************LDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPG**AEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSV***********LVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCE*********ARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMS****************QSLVFDAMVTEAPVYSDY*******************************************************************************CQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKALSIEAQPVPDDGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLI*

*KNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHE*PTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEI***************AIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRD**S*LLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDS********RLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNET*************KTTKTSPPRLHARTCQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKAL******VPDDGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLIP

VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESA***************KYLDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSL*************LVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAM***********PIDPPPIADNETPPP*******************LHARTCQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKALSIEAQPVPDDGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLIP

VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEKPTSANEMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVDGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGPRGEKPLVTASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSF******G*GDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPPPPTIT**********TSP*RLHARTCQKRADLFILQPGRLNNSGLFNPPFSVQKIPHSNLILLVVDTLCPCGSKALSIEAQPVPDDGCKLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAILYRTLIP

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1061	2.2.26 [Sep-21-2011]
Q7Z3S7		1137	Voltage-dependent calcium	yes	N/A	0.542	0.506	0.391	1e-117
Q5RJF7		1116	Voltage-dependent calcium	yes	N/A	0.541	0.515	0.388	1e-115
Q8CFG5		1085	Voltage-dependent calcium	no	N/A	0.532	0.520	0.386	1e-115
Q9Z1L5		1091	Voltage-dependent calcium	no	N/A	0.537	0.522	0.385	1e-114
Q8IZS8		1091	Voltage-dependent calcium	no	N/A	0.537	0.522	0.382	1e-113
P54289		1103	Voltage-dependent calcium	no	N/A	0.537	0.516	0.297	2e-71
O08532		1103	Voltage-dependent calcium	no	N/A	0.537	0.516	0.294	5e-71
Q8CFG6		1157	Voltage-dependent calcium	no	N/A	0.518	0.475	0.291	2e-70
Q6PHS9		1154	Voltage-dependent calcium	no	N/A	0.518	0.476	0.289	6e-70
Q9NY47		1150	Voltage-dependent calcium	no	N/A	0.518	0.478	0.287	3e-69

>sp\|Q7Z3S7\|CA2D4_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Homo sapiens GN=CACNA2D4 PE=1 SV=2	Back alignment and function desciption

 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/616 (39%), Positives = 357/616 (57%), Gaps = 40/616 (6%)

Query: 1   VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDAT--VVRKDGLVLIRELAAEVKNMIDI 58
           VK WA  FG DL+     ++    +Q+KY+D +++  +   DGL L+R+ + +++NM+  
Sbjct: 77  VKLWADTFGGDLYNTVTKYSGSLLLQKKYKDVESSLKIEEVDGLELVRKFSEDMENMLRR 136

Query: 59  KINTVMRILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEKPTSAN------EMYFQV 112
           K+  V  ++E+AE+A L+ + + S    Y +S     + I+E+    N      E   + 
Sbjct: 137 KVEAVQNLVEAAEEADLNHEFNESLVFDYYNS-----VLINERDEKGNFVELGAEFLLES 191

Query: 113 NRHFDQCAVNTSYSSVLLPEAL-AKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYF 171
           N HF    VNTS SSV LP  +  KDPD  ILN +  SE L+ VF+ N++ DP+L+WQYF
Sbjct: 192 NAHFSNLPVNTSISSVQLPTNVYNKDPD--ILNGVYMSEALNAVFVENFQRDPTLTWQYF 249

Query: 172 GSTLGFLRRYPAMKWPVD--GVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKH 229
           GS  GF R YP +KW  D  GV      D R+  W+++AATSPKDIVIL+D S ++    
Sbjct: 250 GSATGFFRIYPGIKWTPDENGVIT---FDCRNRGWYIQAATSPKDIVILVDVSGSMKGLR 306

Query: 230 RNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK 289
             +A+ TI  ILDTLG NDF+NI  ++D    + PC++ +LVQA  +N+   K  +  + 
Sbjct: 307 MTIAKHTITTILDTLGENDFINIIAYNDYVHYIEPCFKGILVQADRDNREHFKLLVEELM 366

Query: 290 GDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVR 349
              V     AL  AF+IL ++    QG  CNQAIML+S G    ++ VF+ YNWP   VR
Sbjct: 367 VKGVGVVDQALREAFQILKQFQEAKQGSLCNQAIMLISDGAVEDYEPVFEKYNWPDCKVR 426

Query: 350 LFSYLIGKSSNYAE-MKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPL 408
           +F+YLIG+  ++A+ MK +AC+NKGY+  I      +  V  Y+ V++RP+++   +H +
Sbjct: 427 VFTYLIGREVSFADRMKWIACNNKGYYTQISTLADTQENVMEYLHVLSRPMVINH-DHDI 485

Query: 409 YWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQK 468
            W+  Y   K   LL+S  +   L+ +V+ PVF K+N T     LLGV   DV ++++ K
Sbjct: 486 IWTEAYMDSK---LLSSQAQSLTLLTTVAMPVFSKKNETRSHGILLGVVGSDVALRELMK 542

Query: 469 LVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVE----RLKPNYNNVDLSEVEIVDSEVY 524
           L P+YKLG +GY+F+  NNG I+ HPD RPLY E    + KPNYN+VDLSEVE  D    
Sbjct: 543 LAPRYKLGVHGYAFLNTNNGYILSHPDLRPLYREGKKLKPKPNYNSVDLSEVEWEDQAE- 601

Query: 525 PRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLAL 584
                     LR  MI+++ G     VK+  D+ +RV    + YF+  I  TP+SLG+ L
Sbjct: 602 ---------SLRTAMINRETGTLSMDVKVPMDKGKRVLFLTNDYFFTDISDTPFSLGVVL 652

Query: 585 PDGYGLYEVLKEEEIK 600
             G+G Y +L    ++
Sbjct: 653 SRGHGEYILLGNTSVE 668

The alpha-2/delta subunit of voltage-dependent calcium channels regulates calcium current density and activation/inactivation kinetics of the calcium channel.
Homo sapiens (taxid: 9606)

>sp\|Q5RJF7\|CA2D4_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Mus musculus GN=Cacna2d4 PE=2 SV=1	Back alignment and function description

>sp\|Q8CFG5\|CA2D3_RAT Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Rattus norvegicus GN=Cacna2d3 PE=2 SV=1	Back alignment and function description

>sp\|Q9Z1L5\|CA2D3_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Mus musculus GN=Cacna2d3 PE=1 SV=1	Back alignment and function description

>sp\|Q8IZS8\|CA2D3_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo sapiens GN=CACNA2D3 PE=1 SV=1	Back alignment and function description

>sp\|P54289\|CA2D1_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Homo sapiens GN=CACNA2D1 PE=1 SV=3	Back alignment and function description

>sp\|O08532\|CA2D1_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Mus musculus GN=Cacna2d1 PE=1 SV=1	Back alignment and function description

>sp\|Q8CFG6\|CA2D2_RAT Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Rattus norvegicus GN=Cacna2d2 PE=2 SV=1	Back alignment and function description

>sp\|Q6PHS9\|CA2D2_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Mus musculus GN=Cacna2d2 PE=1 SV=1	Back alignment and function description

>sp\|Q9NY47\|CA2D2_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Homo sapiens GN=CACNA2D2 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1061
380018614		1028	PREDICTED: voltage-dependent calcium cha	0.885	0.914	0.458	0.0
270016374		1264	hypothetical protein TcasGA2_TC001887 [T	0.569	0.477	0.577	0.0
189242452		1217	PREDICTED: similar to voltage-gated calc	0.569	0.496	0.577	0.0
242009952		652	calcium channel, putative [Pediculus hum	0.546	0.889	0.572	0.0
383847440		1215	PREDICTED: voltage-dependent calcium cha	0.567	0.495	0.547	0.0
328704829		1219	PREDICTED: voltage-dependent calcium cha	0.565	0.492	0.544	0.0
328791329		1204	PREDICTED: voltage-dependent calcium cha	0.567	0.5	0.539	0.0
307191800		1190	Voltage-dependent calcium channel subuni	0.558	0.498	0.540	0.0
350412734		1209	PREDICTED: voltage-dependent calcium cha	0.567	0.497	0.528	0.0
340720696		1208	PREDICTED: voltage-dependent calcium cha	0.567	0.498	0.528	0.0

>gi\|380018614\|ref\|XP_003693222.1\| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like [Apis florea]	Back alignment and taxonomy information

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1113 (45%), Positives = 678/1113 (60%), Gaps = 173/1113 (15%)

Query: 1    VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKI 60
            VKNWALKFG+DLWEFGR  T ++EIQRKY D +A VV+KDG++L+RE+AAEVKNM+D K+
Sbjct: 34   VKNWALKFGVDLWEFGRQVTKMSEIQRKYHDMEAEVVKKDGVLLVREMAAEVKNMLDFKM 93

Query: 61   NTVMRILESAEQAALSQKSDSSSNVKYLDSRKLLHIPIHEKPT-SANEMYFQVNRHFDQC 119
            N VMR++ESAEQAA+S   D +   KY  S++        K + +  E +   NRHFD  
Sbjct: 94   NAVMRLVESAEQAAVSAPRDGNVAPKYYASQRFDSSSGEGKASITGQETFLSSNRHFDHL 153

Query: 120  AVNTSYSSVLLPEALAKDPDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFGSTLGFLR 179
             VN + S+VLLP+ + K  D ++   I+WSE+LD +F NNYE+D SLSWQY+G+T GFLR
Sbjct: 154  PVNITLSTVLLPDGV-KQIDREVAAGIQWSEYLDLLFANNYESDSSLSWQYYGATSGFLR 212

Query: 180  RYPAMKWPV---------DGVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHR 230
            R+PA+ WP             P +D+++FR S WFV AA SPKD+ IL+D    +S +++
Sbjct: 213  RFPAISWPPANDRAFGADKNRPIRDVYEFRISDWFVGAANSPKDLAILIDMECYVSERNK 272

Query: 231  NLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKG 290
             LA  T+  ILDTLG ND+VN++ + D   E+V C+++ LVQA+ EN + LK A+++VK 
Sbjct: 273  RLAVTTVKTILDTLGPNDYVNVYRYGDTAEEIVQCFKDSLVQASPENVQDLKIAMSSVKH 332

Query: 291  DNV-ANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVR 349
            +    N + ALATAFEILH+YNRT QG QCNQAIML+++       EV K YNWPHMPVR
Sbjct: 333  EETPTNISAALATAFEILHRYNRTGQGSQCNQAIMLITADNAGLPTEVIKRYNWPHMPVR 392

Query: 350  LFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLY 409
            +F+YLIG   +  E++  AC+NKG++  I   + +R KVF YV V+ARP+++YQ EHP++
Sbjct: 393  IFTYLIGGDKS-PELRNTACANKGFYARITELEDIRSKVFEYVKVLARPMVLYQHEHPIH 451

Query: 410  WSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKL 469
            WS VY GGK++     ++  G+LM SV+ P+ D+RNYT + ANLLG+   DVP+++IQKL
Sbjct: 452  WSPVYVGGKSSRYGKENI--GQLMTSVTAPILDRRNYTVKTANLLGIVGTDVPVEEIQKL 509

Query: 470  VPQYKLGPNGYSFVVNNNGRIIYHPDFRPL-----YVERLKPNYNNVDLSEVEIV--DSE 522
            VP YKLG NGYSF+V+NNGR++YHPD RPL     Y E LKP Y +VDLSEVE+   D  
Sbjct: 510  VPPYKLGVNGYSFIVDNNGRVLYHPDLRPLPGNVDYEETLKPTYISVDLSEVELAEYDGP 569

Query: 523  VYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGL 582
            ++P  NNSLLLD         +G + F V   +   R                       
Sbjct: 570  LHPL-NNSLLLDFH----VYSQGTSTFGVTRSFIATRS---------------------- 602

Query: 583  ALPDGYGLYEVLKEEEIKLSAVNATRSGLIRWKEHVGSVPGSG-AEFAEQNRRAMDAIWF 641
                  GL+                     RW EH  +   +  + FAE+  RAMD+ W+
Sbjct: 603  ------GLF---------------------RWHEHQQTEDNTDESPFAEKYARAMDSSWY 635

Query: 642  KRAVDQHNIEPDSFVFSVPHNSG-----PRGEKPLVTASHAVFIEDKGHRAPAMVVGLQF 696
            KRAVDQH+IEPDSFVFSVP N+G     P    PLVTA+HAVFI   GH+APA VVGLQF
Sbjct: 636  KRAVDQHSIEPDSFVFSVPFNAGNVTPYPDSPNPLVTATHAVFI-GTGHKAPAAVVGLQF 694

Query: 697  QHSALASHFINITSACTAGPGCKKTCASDDLDCYVLDNNGFIILSEKYEQTGLFFGQADG 756
            QHS+LAS F+NITS C+ G  CKK CASD LDCY+LDNNGFII+SE++E TG FFG+ DG
Sbjct: 695  QHSSLASRFVNITSTCS-GTSCKKNCASDALDCYILDNNGFIIISERHEHTGKFFGEIDG 753

Query: 757  TIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCE--------YNYADDH 808
            TIMDSLVQD IY++V + D QG+C   +++ S ++R+    V           ++ A   
Sbjct: 754  TIMDSLVQDRIYRKVTVTDYQGICSPQESHQSSASRIFTESVAKTIAILGNFLWSMAFGF 813

Query: 809  NFQSPEEQVLHFLARSIQPGWKWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYD 868
            NFQ+  +    F   S++P                 D ++ Q   F+++    PV     
Sbjct: 814  NFQNLWQVAFAFAGESVRP----------------LDDTIGQVHEFESL----PV----- 848

Query: 869  QNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPIDPPPIADNETPP-PPTITS 927
                        D+ G        E A DE              P++D   P  PPTIT+
Sbjct: 849  ------------DVGG--------EEATDE--------------PVSDGNFPRLPPTITA 874

Query: 928  TSPP----TKTTKTSPPRLHARTCQKRADLFILQPGRLNNSGLFNP-------------- 969
             +P     T+ T     R   R+C+K+ DL+ILQP RLN SG  NP              
Sbjct: 875  ATPASPGTTRATSAHHLRTRLRSCEKKTDLYILQPERLNTSGQSNPLKGKLTNCHDTGCE 934

Query: 970  -PFSVQKIPHSNLILLVVDTLCPCGSKALSIE-AQPVPDDGCKLSETHHMYRRKPNKCVN 1027
             PFSVQKIPH+NLILLVVDTLCPCGSK LSIE  + + + G  ++    +YRR+P KC+N
Sbjct: 935  RPFSVQKIPHTNLILLVVDTLCPCGSKQLSIEPIEALTEPGACIARRERLYRRRPPKCIN 994

Query: 1028 YHPEEIEIKQCGSGSR-FHLSFPLLLAILYRTL 1059
            YHPEE+EIK CGS +R  H  F  ++AI+  TL
Sbjct: 995  YHPEEMEIKFCGSANRPCHFFFLFIIAIVSSTL 1027

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|270016374\|gb\|EFA12820.1\| hypothetical protein TcasGA2_TC001887 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|189242452\|ref\|XP_969952.2\| PREDICTED: similar to voltage-gated calcium channel alpha2-delta subunit 1 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|242009952\|ref\|XP_002425745.1\| calcium channel, putative [Pediculus humanus corporis] gi\|212509649\|gb\|EEB13007.1\| calcium channel, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|383847440\|ref\|XP_003699362.1\| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|328704829\|ref\|XP_001947889.2\| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|328791329\|ref\|XP_623849.3\| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|307191800\|gb\|EFN75238.1\| Voltage-dependent calcium channel subunit alpha-2/delta-3 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|350412734\|ref\|XP_003489744.1\| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|340720696\|ref\|XP_003398768.1\| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1061
FB\|FBgn0028863		1243	CG4587 [Drosophila melanogaste	0.578	0.493	0.503	2.8e-266
FB\|FBgn0261041		1218	stj "straightjacket" [Drosophi	0.384	0.334	0.410	3.4e-190
UNIPROTKB\|Q7Z3S7		1137	CACNA2D4 "Voltage-dependent ca	0.542	0.506	0.392	5.5e-149
MGI\|MGI:2442632		1116	Cacna2d4 "calcium channel, vol	0.541	0.515	0.388	3.8e-148
RGD\|631361		1085	Cacna2d3 "calcium channel, vol	0.531	0.519	0.387	1.6e-147
MGI\|MGI:1338890		1091	Cacna2d3 "calcium channel, vol	0.535	0.520	0.389	6.3e-146
UNIPROTKB\|Q8IZS8		1091	CACNA2D3 "Voltage-dependent ca	0.537	0.522	0.382	5.6e-145
UNIPROTKB\|P54289		1103	CACNA2D1 "Voltage-dependent ca	0.545	0.524	0.306	7.7e-91
MGI\|MGI:88295		1103	Cacna2d1 "calcium channel, vol	0.540	0.520	0.302	2.3e-89
UNIPROTKB\|E1BST6		1064	CACNA2D1 "Uncharacterized prot	0.540	0.538	0.298	3.2e-81

FB\|FBgn0028863 CG4587 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1659 (589.1 bits), Expect = 2.8e-266, Sum P(4) = 2.8e-266
 Identities = 322/639 (50%), Positives = 449/639 (70%)

Query:     1 VKNWALKFGIDLWEFGRHFTNVNEIQRKYQDRDATVVRKDGLVLIRELAAEVKNMIDIKI 60
             V+NWALKFG+DLWEFGR FT +NEI+ +++D D  V RKDG++L+RELAAEVKN +D K 
Sbjct:    39 VRNWALKFGVDLWEFGRQFTKMNEIKSRFKDNDIEVKRKDGIILLRELAAEVKNFMDFKR 98

Query:    61 NTVMRILESAEQAALSQ---KSDSSSNV---KYLDSRKLLHIPIHEK-PTSANEMYFQVN 113
             N VMR+++SAEQAALS+   +  + S +   ++ D+R++       K    A  M  +  
Sbjct:    99 NAVMRLMDSAEQAALSELEGQGQAESPMGGQQHYDARRINEYNADGKLADGARHMDIRFM 158

Query:   114 RHFDQCAVNTSYSSVLLPEALAKD-PDEQILNAIKWSEHLDPVFLNNYETDPSLSWQYFG 172
             R F++  VN S SS+L+P  +  D PD  + +A++WS HLDP+F NN E DP+LSWQYFG
Sbjct:   159 RRFERLPVNLSLSSILVPHGVDLDEPD--VKSALQWSGHLDPLFQNNLEQDPALSWQYFG 216

Query:   173 STLGFLRRYPAMKWPVDGVPPQDL-HDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRN 231
             S+ GFLRR+P   WP +G     L HDFR+  WFV+AA+SPKDI+ILLDASS+++ K  +
Sbjct:   217 SSTGFLRRFPGTAWPPEGSKGSKLIHDFRTHNWFVQAASSPKDIMILLDASSSMTEKSFD 276

Query:   232 LARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGD 291
             L  AT   ILDTLG +DFVN+ TFS+V    VPC+++ +V+AT +N + +K+A+  +K  
Sbjct:   277 LGMATAFNILDTLGEDDFVNLITFSEVVKTPVPCFKDRMVRATPDNIQEIKSAVKAIKLQ 336

Query:   292 NVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLF 351
             + ANFT  L  AF +LHKYN++  G QCNQAIML++     + K+V K YNWPHMPVR+F
Sbjct:   337 DTANFTAGLEYAFSLLHKYNQSGAGSQCNQAIMLITESTSESHKDVIKQYNWPHMPVRIF 396

Query:   352 SYLIGKSS-NYAEMKQMACSNKGYFEFIKNTDRLRMKVFNYVLVMARPLIMYQTEHPLYW 410
             +YLIG  S + + +  MACSNKG+F  I + D  R KV +Y LVMARP+IMYQ +HP++W
Sbjct:   397 TYLIGSDSGSRSNLHDMACSNKGFFVQINDYDEARRKVIDYALVMARPMIMYQADHPVHW 456

Query:   411 SSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANLLGVAAVDVPIQQIQKLV 470
             S V+  GK+  L      + +L+ +VSTPVFD+RN++ R ANLLGV   DVPI++I+K++
Sbjct:   457 SPVFVAGKSGGLGRDSEYQRRLVTTVSTPVFDRRNHSVRVANLLGVVGTDVPIEEIRKVI 516

Query:   471 PQYKLGPNGYSFVVNNNGRIIYHPDFRPL-----YVERLKPNYNNVDLSEVEIVDSEV-- 523
             PQ+KLGPNGYSF+V+NNGR++YHPD RPL     Y+++LKP Y +VD++E+E+ ++E   
Sbjct:   517 PQHKLGPNGYSFIVDNNGRVLYHPDLRPLGDANQYIDQLKPKYASVDITELELPETEFGN 576

Query:   524 --YPRD-NNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSL 580
                P + N +LL ++R DMI  KEGETEF V  HYD+ +RV++R HRYFY PIE TP++L
Sbjct:   577 NNEPIEINKNLLNEMRGDMIKPKEGETEFTVMNHYDDSKRVSTRTHRYFYGPIEDTPFTL 636

Query:   581 GLALPDGYGLYEVLKEEEIKLSAVNATR--SGLIRWKEH 617
              + LP+ YG +E + ++EI+ S  N T    G   W+ H
Sbjct:   637 AIVLPEKYGSHEFVSQQEIRHSRNNVTEYFKG-DNWRVH 674

GO:0005245 "voltage-gated calcium channel activity" evidence=ISS

FB\|FBgn0261041 stj "straightjacket" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z3S7 CACNA2D4 "Voltage-dependent calcium channel subunit alpha-2/delta-4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2442632 Cacna2d4 "calcium channel, voltage-dependent, alpha 2/delta subunit 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|631361 Cacna2d3 "calcium channel, voltage-dependent, alpha2/delta subunit 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1338890 Cacna2d3 "calcium channel, voltage-dependent, alpha2/delta subunit 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IZS8 CACNA2D3 "Voltage-dependent calcium channel subunit alpha-2/delta-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P54289 CACNA2D1 "Voltage-dependent calcium channel subunit alpha-2/delta-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:88295 Cacna2d1 "calcium channel, voltage-dependent, alpha2/delta subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BST6 CACNA2D1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1061
cd01463		190	cd01463, vWA_VGCC_like, VWA Voltage gated Calcium	6e-63
pfam08399		123	pfam08399, VWA_N, VWA N-terminal	3e-29
pfam02743		81	pfam02743, Cache_1, Cache domain	2e-20
cd01461		171	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_int	2e-14
cd01466		155	cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Wille	2e-12
pfam13768		156	pfam13768, VWA_3, von Willebrand factor type A dom	1e-11
smart00327		175	smart00327, VWA, von Willebrand factor (vWF) type	4e-11
cd00198		161	cd00198, vWFA, Von Willebrand factor type A (vWA)	3e-09
TIGR03788		596	TIGR03788, marine_srt_targ, marine proteobacterial	9e-06
pfam00092		178	pfam00092, VWA, von Willebrand factor type A domai	6e-05
pfam08473		94	pfam08473, VGCC_alpha2, Neuronal voltage-dependent	9e-05
pfam13519		172	pfam13519, VWA_2, von Willebrand factor type A dom	2e-04

>gnl\|CDD\|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta	Back alignment and domain information

 Score =  211 bits (539), Expect = 6e-63
 Identities = 90/190 (47%), Positives = 128/190 (67%), Gaps = 7/190 (3%)

Query: 200 RSSAWFVEAATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVT 259
           R+ +W+++AATSPKDIVILLD S +++ +  +LA+ T++ ILDTL  NDF NI TFS+  
Sbjct: 1   RNRSWYIQAATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEV 60

Query: 260 VELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHK---YNRTNQG 316
             +VPC+ + LVQAT  NK+ LK AL  ++   +AN+T AL  AF +L K    N +   
Sbjct: 61  NPVVPCFNDTLVQATTSNKKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSR 120

Query: 317 CQCNQAIMLVSSGPPSAFKEVFKHYNWPH---MPVRLFSYLIGKSS-NYAEMKQMACSNK 372
            QCNQAIML++ G P  +KE+F  YNW     +PVR+F+YLIG+   +  E++ MAC NK
Sbjct: 121 SQCNQAIMLITDGVPENYKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENK 180

Query: 373 GYFEFIKNTD 382
           GY+  I++ D
Sbjct: 181 GYYSHIQSLD 190

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex. Length = 190

>gnl\|CDD\|219821 pfam08399, VWA_N, VWA N-terminal	Back alignment and domain information

>gnl\|CDD\|217211 pfam02743, Cache_1, Cache domain	Back alignment and domain information

>gnl\|CDD\|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)	Back alignment and domain information

>gnl\|CDD\|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>gnl\|CDD\|222367 pfam13768, VWA_3, von Willebrand factor type A domain	Back alignment and domain information

>gnl\|CDD\|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain	Back alignment and domain information

>gnl\|CDD\|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>gnl\|CDD\|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein	Back alignment and domain information

>gnl\|CDD\|215711 pfam00092, VWA, von Willebrand factor type A domain	Back alignment and domain information

>gnl\|CDD\|117050 pfam08473, VGCC_alpha2, Neuronal voltage-dependent calcium channel alpha 2acd	Back alignment and domain information

>gnl\|CDD\|222192 pfam13519, VWA_2, von Willebrand factor type A domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1061
KOG2353\|consensus		1104		100.0
PF08399		123	VWA_N: VWA N-terminal; InterPro: IPR013608 This do	99.96
cd01463		190	vWA_VGCC_like VWA Voltage gated Calcium channel li	99.96
PF13768		155	VWA_3: von Willebrand factor type A domain	99.88
cd01461		171	vWA_interalpha_trypsin_inhibitor vWA_interalpha tr	99.85
cd01466		155	vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact	99.85
TIGR03788		596	marine_srt_targ marine proteobacterial sortase tar	99.83
cd01456		206	vWA_ywmD_type VWA ywmD type:Von Willebrand factor	99.79
cd01465		170	vWA_subgroup VWA subgroup: Von Willebrand factor t	99.79
cd01470		198	vWA_complement_factors Complement factors B and C2	99.78
cd01480		186	vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI	99.74
cd01472		164	vWA_collagen von Willebrand factor (vWF) type A do	99.74
TIGR00868		863	hCaCC calcium-activated chloride channel protein 1	99.71
PRK13685		326	hypothetical protein; Provisional	99.7
cd01464		176	vWA_subfamily VWA subfamily: Von Willebrand factor	99.68
cd01471		186	vWA_micronemal_protein Micronemal proteins: The To	99.66
cd01451		178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	99.65
cd01474		185	vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi	99.63
cd01477		193	vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand	99.62
cd01475		224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	99.61
cd01453		183	vWA_transcription_factor_IIH_type Transcription fa	99.6
cd01482		164	vWA_collagen_alphaI-XII-like Collagen: The extrace	99.6
cd01469		177	vWA_integrins_alpha_subunit Integrins are a class	99.59
cd01467		180	vWA_BatA_type VWA BatA type: Von Willebrand factor	99.59
PF13519		172	VWA_2: von Willebrand factor type A domain; PDB: 3	99.59
cd01450		161	vWFA_subfamily_ECM Von Willebrand factor type A (v	99.59
cd01462		152	VWA_YIEM_type VWA YIEM type: Von Willebrand factor	99.58
cd01473		192	vWA_CTRP CTRP for CS protein-TRAP-related protein:	99.56
cd01476		163	VWA_integrin_invertebrates VWA_integrin (invertebr	99.56
TIGR03436		296	acidobact_VWFA VWFA-related Acidobacterial domain.	99.55
cd01454		174	vWA_norD_type norD type: Denitrifying bacteria con	99.51
smart00327		177	VWA von Willebrand factor (vWF) type A domain. VWA	99.49
PF00092		178	VWA: von Willebrand factor type A domain; InterPro	99.48
cd01481		165	vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V	99.48
PF02743		81	Cache_1: Cache domain; InterPro: IPR004010 Cache i	99.48
PRK13406		584	bchD magnesium chelatase subunit D; Provisional	99.47
PTZ00441		576	sporozoite surface protein 2 (SSP2); Provisional	99.46
TIGR02031		589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.41
COG1240		261	ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis	99.38
cd01455		191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	99.37
cd01457		199	vWA_ORF176_type VWA ORF176 type: Von Willebrand fa	99.37
cd00198		161	vWFA Von Willebrand factor type A (vWA) domain was	99.36
PRK15426		570	putative diguanylate cyclase YedQ; Provisional	99.3
COG4245		207	TerY Uncharacterized protein encoded in toxicity p	99.29
TIGR02442		633	Cob-chelat-sub cobaltochelatase subunit. A number	99.25
cd01452		187	VWA_26S_proteasome_subunit 26S proteasome plays a	99.18
PF08473		94	VGCC_alpha2: Neuronal voltage-dependent calcium ch	99.15
COG2425		437	Uncharacterized protein containing a von Willebran	99.07
PRK10997		487	yieM hypothetical protein; Provisional	98.95
cd01460		266	vWA_midasin VWA_Midasin: Midasin is a member of th	98.94
cd01458		218	vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter	98.82
PF10138		200	vWA-TerF-like: vWA found in TerF C terminus ; Inte	98.81
PF11775		219	CobT_C: Cobalamin biosynthesis protein CobT VWA do	98.17
PF09967		126	DUF2201: VWA-like domain (DUF2201); InterPro: IPR0	98.12
PF05762		222	VWA_CoxE: VWA domain containing CoxE-like protein;	98.08
COG2304		399	Uncharacterized protein containing a von Willebran	97.89
TIGR01651		600	CobT cobaltochelatase, CobT subunit. This model de	97.8
cd01468		239	trunk_domain trunk domain. COPII-coated vesicles c	97.8
COG4867		652	Uncharacterized protein with a von Willebrand fact	97.73
PF04056		193	Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro	97.67
cd01459		254	vWA_copine_like VWA Copine: Copines are phospholip	97.64
PRK15347		921	two component system sensor kinase SsrA; Provision	97.58
PF04811		243	Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I	97.53
cd01478		267	Sec23-like Sec23-like: Protein and membrane traffi	97.52
cd01479		244	Sec24-like Sec24-like: Protein and membrane traffi	97.49
KOG3768\|consensus		888		97.39
KOG2353\|consensus		1104		97.28
PF04285		421	DUF444: Protein of unknown function (DUF444); Inte	97.19
PF03731		224	Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte	97.14
PF11443		534	DUF2828: Domain of unknown function (DUF2828); Int	97.06
PRK05325		401	hypothetical protein; Provisional	97.02
TIGR02877		371	spore_yhbH sporulation protein YhbH. This protein	96.88
KOG2807\|consensus		378		96.87
PLN00162		761	transport protein sec23; Provisional	96.85
PF07002		146	Copine: Copine; InterPro: IPR010734 This represent	96.68
PF06707		205	DUF1194: Protein of unknown function (DUF1194); In	96.65
COG4548		637	NorD Nitric oxide reductase activation protein [In	96.64
KOG1327\|consensus		529		96.4
COG2718		423	Uncharacterized conserved protein [Function unknow	96.33
COG4547		620	CobT Cobalamin biosynthesis protein CobT (nicotina	96.3
PF11265		226	Med25_VWA: Mediator complex subunit 25 von Willebr	95.9
PF02743		81	Cache_1: Cache domain; InterPro: IPR004010 Cache i	95.82
smart00187		423	INB Integrin beta subunits (N-terminal portion of	95.59
KOG2884\|consensus		259		95.39
COG3552		395	CoxE Protein containing von Willebrand factor type	95.2
COG5148		243	RPN10 26S proteasome regulatory complex, subunit R	95.18
TIGR00627		279	tfb4 transcription factor tfb4. This family is bas	95.06
TIGR00578		584	ku70 ATP-dependent DNA helicase ii, 70 kDa subunit	94.94
PF03850		276	Tfb4: Transcription factor Tfb4; InterPro: IPR0046	94.62
PTZ00395		1560	Sec24-related protein; Provisional	94.53
COG3864		396	Uncharacterized protein conserved in bacteria [Fun	94.34
PRK15426		570	putative diguanylate cyclase YedQ; Provisional	94.01
KOG1985\|consensus		887		93.93
COG1721		416	Uncharacterized conserved protein (some members co	93.88
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	92.73
PF08269		95	Cache_2: Cache domain; InterPro: IPR013163 Cache i	91.25
KOG1984\|consensus		1007		90.67
COG5151		421	SSL1 RNA polymerase II transcription initiation/nu	90.23
PF00362		426	Integrin_beta: Integrin, beta chain; InterPro: IPR	89.74
COG5242		296	TFB4 RNA polymerase II transcription initiation/nu	89.51
KOG4465\|consensus		598		89.38
COG4191		603	Signal transduction histidine kinase regulating C4	86.7
COG4564		459	Signal transduction histidine kinase [Signal trans	85.96
KOG1986\|consensus		745		85.28
PRK10841		924	hybrid sensory kinase in two-component regulatory	84.3
PF10388		166	YkuI_C: EAL-domain associated signalling protein d	80.04

>KOG2353\|consensus	Back alignment and domain information

Probab=100.00  E-value=5.1e-144  Score=1330.01  Aligned_cols=938  Identities=38%  Similarity=0.638  Sum_probs=796.2

Q ss_pred             hhhHHHHHHHHHHHHHhhcCHHHHHHHhcc--cCcEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q psy17515          2 KNWALKFGIDLWEFGRHFTNVNEIQRKYQD--RDATVVRKDGLVLIRELAAEVKNMIDIKINTVMRILESAEQAALSQKS   79 (1061)
Q Consensus         2 ~~wa~~~~~~l~~~~~~~~~~~~l~~~y~~--~~~~~~~~dg~~lv~~~a~~~~~~l~~k~~av~~l~~~ae~~~~~~~~   79 (1061)
                      +.||.++...+..+.+...|...+..+|+.  ..+..++.|+..+++..+.+++.+|..|.+++.|++.+||+....|++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~e~~~~~~se~~~r~~~~ae~~~~~~~~   85 (1104)
T KOG2353|consen    6 PSIASKLRKISVTLLRTFSGVEQFAIAQFSYNKLADNEKQNPRNLVQEVKNDLELLLSVKSEALRRLARSAEAVSLRHEN   85 (1104)
T ss_pred             HHHHHHHHhhhccchhhhhhhhhhHHHHHHHHhhhhhhccCcchhhhhhhcchhHHHHHhHHHHHHHHHHHHHHHhhhhh
Confidence            579999999999999999999999999888  458889999999999999999999999999999999999999988865


Q ss_pred             ---CCCCCceeeccccc-cCCCCCCC-CCCCC--ccccccCCCCCccccccceeeeeeCCCCCCCCCHHHHhhhccccch
Q psy17515         80 ---DSSSNVKYLDSRKL-LHIPIHEK-PTSAN--EMYFQVNRHFDQCAVNTSYSSVLLPEALAKDPDEQILNAIKWSEHL  152 (1061)
Q Consensus        80 ---~~~~~~~y~~~~~~-~~~~~~~~-~~~~~--~~~l~~~~~F~~~~Vn~~~s~v~vpt~v~~~~~~~v~~~i~ws~~L  152 (1061)
                         +....+.|+.++.- ....++.. .+.++  .+.|+++.||+++|||++.|+||||+++ |+++|+|++++.||++|
T Consensus        86 ~~d~~sk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~pV~~s~ssVhipt~~-y~~~~~vl~~~~WS~~l  164 (1104)
T KOG2353|consen   86 RVDPQSKYFVYYLAKEDAEDEDEDQEDWELGKRASMILEPDDHFYNTPVNTSHSSVHIPTNI-YDRSPDVLNAIDWSEHL  164 (1104)
T ss_pred             hccccccceeEecccccccccchhhhhhhhhhcccccccchhhhccCceeeeecceeccccc-cccCHHHHhhcccccch
Confidence               55566777766532 11222222 22233  4899999999999999999999999999 99999999999999999


Q ss_pred             HHHHhhhccCCCCccccccccCCcccccCCCCCCCCC-CCCCCccccccCccceeeccCCCceEEEEEccCCCCCcchHH
Q psy17515        153 DPVFLNNYETDPSLSWQYFGSTLGFLRRYPAMKWPVD-GVPPQDLHDFRSSAWFVEAATSPKDIVILLDASSTLSTKHRN  231 (1061)
Q Consensus       153 d~~F~~n~~~dp~l~wQyfgS~~G~~r~yPa~~w~~~-~~~~~~~yD~R~R~Wyi~aa~~pkdVVILlD~SGSM~g~~l~  231 (1061)
                      |.+|++|+++||+|.||||||++|++|+|||.+|.++ ..+.+++||||+|+||+++|++||||+||+|+||||+|.+++
T Consensus       165 d~vf~~N~~~dP~l~wQ~Fgs~tG~~R~yPa~~W~~~~~~~~idl~D~R~r~Wyi~aAt~pKdiviLlD~SgSm~g~~~~  244 (1104)
T KOG2353|consen  165 DFVFRDNRESDPTLSWQYFGSATGLLRYYPAAAWFDNNTDNSIDLYDCRNRSWYIQAATSPKDIVILLDVSGSMSGLRLD  244 (1104)
T ss_pred             hHHHhhccccCchhhHHHhhhhhhhhhhCCCccCccCCCCCcceeeecccccccccccCCccceEEEEeccccccchhhH
Confidence            9999999999999999999999999999999999975 456899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHhcc
Q psy17515        232 LARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYN  311 (1061)
Q Consensus       232 ~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~~~G~Tnl~~AL~~A~~~L~~~~  311 (1061)
                      +||.++..||++|+++|+|+|++|++++..++||+.++++|||..|++.++++|+.+.+.|.|++..||++||++|.+.+
T Consensus       245 lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n  324 (1104)
T KOG2353|consen  245 LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYN  324 (1104)
T ss_pred             HHHHHHHHHHHhcccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cCCCCCC---CceEEEEEeCCCCCcHHHHHHhhCCCCCCeeEEEEEecCC-chhhhhhhhhccCCccceeeeccccccce
Q psy17515        312 RTNQGCQ---CNQAIMLVSSGPPSAFKEVFKHYNWPHMPVRLFSYLIGKS-SNYAEMKQMACSNKGYFEFIKNTDRLRMK  387 (1061)
Q Consensus       312 ~~~~~~~---~~~~IvLlTDG~~~~~~~i~~~~n~~~~~VrIfTigIG~~-~d~~~L~~IA~~ngG~y~~I~~~~dv~e~  387 (1061)
                      .++.++.   |+++|||+|||.+++..++|+++||..++||||||.||.+ ++...++||||.|+|+|.+|.+.+++++.
T Consensus       325 ~s~~~~~~~~C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftflig~~~~~~~~~~wmac~n~gyy~~I~~~~~v~~~  404 (1104)
T KOG2353|consen  325 DSRANTQRSPCNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQWMACANKGYYVHIISIADVREN  404 (1104)
T ss_pred             cccccccccccceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEecccccccccchhhhhhCCCceEeccchhhcChH
Confidence            7665444   9999999999999999999999999999999999999999 88999999999999999999999999999


Q ss_pred             eeeeeeecccccccc-cccCCccccccccCCCCcccccccccCCcEEEEEEEEEeeCCcccc-----cCCcEEEEEEEEe
Q psy17515        388 VFNYVLVMARPLIMY-QTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTT-----RAANLLGVAAVDV  461 (1061)
Q Consensus       388 v~~y~d~larp~~~~-~~~~~~~wT~pY~d~~~~~~~~~~~~~~~lviTvs~PV~d~~~~~~-----~~g~llGVvg~DV  461 (1061)
                      .+.|.++++||++.. ..+++++||.+|.+...          .+++++++.||++......     ++..++||+|+||
T Consensus       405 ~~~y~~vlsRp~vl~~~~~~pv~wt~vy~~~~~----------~~~i~~~~~pv~~~~~~~~~~~~~~~~~~lgV~~~dv  474 (1104)
T KOG2353|consen  405 VLEYLDVLSRPLVLQGEEAHPVTWTQVYTDLLY----------LGLIVTVSLPVFNRTQRHVRVQNTSNQLLLGVVGTDV  474 (1104)
T ss_pred             hhhhhhhhccceeecccccCCceeeehhhhhcc----------CcceEecccCcccchhhhhhhcccccceEEEEEeccc
Confidence            999999999999998 78899999999998753          5679999999998754332     3455999999999


Q ss_pred             chHHHHhhccCCccCCceEEEEEeCCCcEEEcCCCCc--ccccccCCCCCCCCcchhhhcccCCCCCCcchhHHHHHHHH
Q psy17515        462 PIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRP--LYVERLKPNYNNVDLSEVEIVDSEVYPRDNNSLLLDLRHDM  539 (1061)
Q Consensus       462 ~L~~L~~ll~~~klG~~GY~flVd~nG~VL~HPdl~~--~~~~~lk~~ynsvDl~evE~~d~~~~p~~~~~~l~~lr~~m  539 (1061)
                      |+++|.++++.+++|.+||.|++|+||++|+||++++  .....++|+|.+.|+.++|..+        ...+.++|.+|
T Consensus       475 pv~ei~k~~~~~~lg~~gy~f~vd~nG~vl~HP~l~~~~~~~~~~~p~y~~~d~~ele~~e--------~~~~~~ir~~m  546 (1104)
T KOG2353|consen  475 PVKEIKKLTPPYKLGLNGYFFAVDNNGYVLLHPQLRPPPETTKKLKPNYLSFDLTELEHPE--------QDSLVEIRNAM  546 (1104)
T ss_pred             CHHHHhhcCCccccCCCceEEEecCCccEEecCcccCCCcCCcccccccccchhHhhcccc--------hhhhHHHHHhh
Confidence            9999999999999999999999999999999999984  3333378999999999998652        24567999999


Q ss_pred             HhcCCCceeEEEEEeeCCeEEEeeeeeEEEEEEeCCCCeEEEEEEeCcchhhhhchHH----------------------
Q psy17515        540 IDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPIEGTPYSLGLALPDGYGLYEVLKEE----------------------  597 (1061)
Q Consensus       540 i~~~~G~~~~~~~~~~dg~~rv~~~~~~y~y~pI~~T~WsL~v~lp~~~~~~~~~~~~----------------------  597 (1061)
                      ++.++|...+.++++++.++||....+.|+|+||++|+++|++++|.....+......                      
T Consensus       547 i~~~~~~~~~~~~~~~d~~~~v~~~~~~Y~~t~i~~t~f~L~iv~p~y~~~~~~~~~~~~~h~~~~~~~~~~~~w~lhp~  626 (1104)
T KOG2353|consen  547 IDSDEGEKNFRVKFHYDDERRVSEYTRDYYWTPINDTPFTLGIVLPGYGFIKNNVKRDEGRHQKDNMFDLFIDNWKLHPD  626 (1104)
T ss_pred             ccCCCCceeeeeEEEeeccccccccccCccccccCCCCceeeeecCceeeeccCcchhhceeecccccchhhhceeeccc
Confidence            9999988899999999999999999999999999999999999999322111000000                      


Q ss_pred             --------------HHHHh-------------------------------------------------------------
Q psy17515        598 --------------EIKLS-------------------------------------------------------------  602 (1061)
Q Consensus       598 --------------~I~~~-------------------------------------------------------------  602 (1061)
                                    ++...                                                             
T Consensus       627 ~~~~~~~~~~~~e~~l~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~li~~a~~t~~~~~~~~~~~~~~~  706 (1104)
T KOG2353|consen  627 WRYCEGHTFGTPEAKLQNYLKQSGSDPTLQWDKDQLNEGMLKDVPDAYFCNAYLAQLLIFDARVTNELVGNATFSSDEEK  706 (1104)
T ss_pred             ccccccccccchHHHHHhhhhhccCCCcccchhHHHhhccccccccchHHHHHHHHHHHhhhhhhhccccceeccchhhh
Confidence                          00000                                                             


Q ss_pred             -------hhhccccchHHHHhhhccCCCCchhhhhhhhcccchhhHHhhhhccCCCCCcEEEeccCCCCC---CCCCceE
Q psy17515        603 -------AVNATRSGLIRWKEHVGSVPGSGAEFAEQNRRAMDAIWFKRAVDQHNIEPDSFVFSVPHNSGP---RGEKPLV  672 (1061)
Q Consensus       603 -------~f~atrsgL~r~~~~~~~~~gdl~~f~~~~~~~i~~~wYkra~~~~~~~~~~~v~s~p~~~~~---~~~~~~v  672 (1061)
                             .|++|.+||+||+.+.+.+.-+..+|...+.+  ++.|||||++|+   .++|||++||+++.   .+...+|
T Consensus       707 ~~~~~~~~fv~t~~gltr~~~~~~~~~h~~~~f~~d~~~--~~~~ykr~~~~~---~~~fv~~v~f~~~~~~~~n~~~~v  781 (1104)
T KOG2353|consen  707 NGYLVAHPFVATYSGLTRWQVFLKSAEHKEEHFNTDHFR--DPTWYKRASLQH---HGDFVYSVPFNDGLMDILNNVVGV  781 (1104)
T ss_pred             cCeeeeeeeeecccccccccccccccccccccccccccC--CchHHHHhhhcc---cccEEEeeecCCChHHHhcCccce
Confidence                   68899999999998888772223377777777  899999999998   66699999999987   6778899


Q ss_pred             EEEEEEEeccCCcccceeEEEEEechhHHHHHHHHhcccCCC-CCC-CCCCCCCCCcceeEecCCceEEec-cccccccc
Q psy17515        673 TASHAVFIEDKGHRAPAMVVGLQFQHSALASHFINITSACTA-GPG-CKKTCASDDLDCYVLDNNGFIILS-EKYEQTGL  749 (1061)
Q Consensus       673 taS~ai~~~~~~~~~~~aVvG~q~~~~~~~~~f~~~t~~C~~-~~~-c~~~C~~~~~~CyliD~~G~iv~S-~~~~~~G~  749 (1061)
                      ++|+||++..+|+.+.+||||+|+++++|.+.||++|++|.+ .++ |...|.+++++||++|+|||+++| ..-.++|+
T Consensus       782 ~~s~~v~~~~~g~na~~AVvg~q~~~~af~~~f~~~tr~c~~~~~~~c~c~c~~e~~~c~~~d~ngf~~~s~~~~~~~g~  861 (1104)
T KOG2353|consen  782 EASTAVEALIRGKNAFAAVVGVQCDLEAFDEKFWTATRQCPNCLDGPCWCECPDEVLDCYIIDNNGFVIISGGKSHQTGR  861 (1104)
T ss_pred             eehhhhHhhccCcccceeeEeeecchhHHHHHhhhhhhcCCcccCCccceecCCcCceeEEecCCceEEeccccccCCcc
Confidence            999999999999999999999999999999999999999976 445 888999999999999999999999 66689999


Q ss_pred             ccccccHHHHHHhHhCCccceecceeccccccCCCCCCcchhhhhheeeeeeecccCCCCCCChHHHHHHHHHhccCCCC
Q psy17515        750 FFGQADGTIMDSLVQDGIYKRVPMYDNQGVCEDSKANDSDSARLLKVRVYCEYNYADDHNFQSPEEQVLHFLARSIQPGW  829 (1061)
Q Consensus       750 ffg~i~~~~m~~l~~~~if~~~~~~DyQa~C~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  829 (1061)
                      |||+|||.+|.+||++++|+++++|||||+|++...+..+|+.++.=.  |- +..  .-+.||.-..+++++       
T Consensus       862 ffg~id~~lm~~lv~~~~~~r~T~yDyQavC~~~~~~~~ga~~~l~P~--~~-~~l--~~~~~~w~~~~~~~~-------  929 (1104)
T KOG2353|consen  862 FFGEIDPALMRSLVNNRCYTRVTSYDYQAVCEACKVDSDGAAHVLAPQ--CF-AIL--RALYTKWLPKMNALA-------  929 (1104)
T ss_pred             cccccCHHHHHHHhhcceeeeeehhhhhhhcccccCCCcccccccCcc--hh-HHH--HHhhhhHHHHHHHHH-------
Confidence            999999999999999999999999999999999999999888632100  10 000  000011100133332       


Q ss_pred             cccccCCCCCCCCCchHHHHHHhhhheeeccCCcccccccCCCCCCCCCCCCCCCCCCCcchhhhhhhcccccccccCCC
Q psy17515        830 KWMSLRPRSPQENSSDKSLVQSLVFDAMVTEAPVYSDYDQNYDTDQSFPESDMDGDGDESMDLEAAMDETMSEVTKSQPI  909 (1061)
Q Consensus       830 ~w~~~~~~~~~~~~cd~~l~q~l~~da~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  909 (1061)
                       |.               ++|...- |-   ..|.....++                   .+++                
T Consensus       930 -~~---------------~~q~~~~-~~---~~~~p~~~~~-------------------~~v~----------------  954 (1104)
T KOG2353|consen  930 -WE---------------LLQISQC-AY---SDWYPSGGEA-------------------ESVE----------------  954 (1104)
T ss_pred             -HH---------------HHHHHhh-hh---ccccccccCc-------------------eeee----------------
Confidence             32               3443321 00   0121111000                   0000                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccceeeeeeecCC-c-----ccc-CCC--CCCCeeeeecCCCc
Q psy17515        910 DPPPIADNETPPPPTITSTSPPTKTTKTSPPRLHARTCQKRADLFILQPG-R-----LNN-SGL--FNPPFSVQKIPHSN  980 (1061)
Q Consensus       910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cd~~~~~y~~~~~-~-----~~~-~~~--c~r~f~~~~i~~sN  980 (1061)
                             ..         +-++.|++      ...+|||+++++|+++++ +     +.+ |+.  |+|+|+||+||+||
T Consensus       955 -------~~---------~~~~~~h~------~~~~pc~~q~~~y~~~~~~~~~~~~~~~~c~~~~csr~f~~~~ip~tn 1012 (1104)
T KOG2353|consen  955 -------IN---------AIYAKKHK------THLYPCDMQYTAYVLQNDRNNPDNGNLDLCHASACSRKFVAQPIPNTN 1012 (1104)
T ss_pred             -------cc---------cccccccc------CCCCcCccccceeeecccccccccccccccccccccceeEEeecCCCc
Confidence                   00         01121211      246899999999999999 4     566 999  99999999999999


Q ss_pred             eEEEEEec-CCCCCCC-cCccccccC--CC-CCC-cccccCCCCCCCCCccccCCcccccccccCCcccccccHHHHHHH
Q psy17515        981 LILLVVDT-LCPCGSK-ALSIEAQPV--PD-DGC-KLSETHHMYRRKPNKCVNYHPEEIEIKQCGSGSRFHLSFPLLLAI 1054 (1061)
Q Consensus       981 L~lvvv~~-~c~~~~~-~l~~~p~~~--~~-~~C-~~~~~~~~~Rrrp~~C~~~h~~e~~~~~cg~~~~~~~~~~~~~~~ 1054 (1061)
                      |+|+|+|. .|+|++. ++.++|+|.  ++ .+| +.  ..+++||||++|+++|++|+.+.+||+++.+.+|++++|++
T Consensus      1013 l~~~v~d~~~c~cs~~~~~~~~p~e~~~~~~~~C~~~--~~~~~rrrpd~c~~~~~~e~~~~~cg~~~s~~~s~~~~l~~ 1090 (1104)
T KOG2353|consen 1013 LSLVVVDRPSCPCSSHGPLTIEPQEPQYNESEKCETV--KSQRYRRRPDSCHDFHIEESIASDCGRASSLNPSLGLLLLI 1090 (1104)
T ss_pred             eeEEEEecCCCcccccccccccCcCcccccccchhhh--hhhhhccCCcccccCCCCchhhhhcCCccccCCCccceeee
Confidence            99999999 8999997 799999998  55 899 55  35999999999999999999888999999999999998876

>PF08399 VWA_N: VWA N-terminal; InterPro: IPR013608 This domain is found at the N terminus of proteins containing von Willebrand factor type A (VWA, IPR002035 from INTERPRO) and Cache (IPR004010 from INTERPRO) domains	Back alignment and domain information

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta	Back alignment and domain information

>PF13768 VWA_3: von Willebrand factor type A domain	Back alignment and domain information

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)	Back alignment and domain information

>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein	Back alignment and domain information

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation	Back alignment and domain information

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins	Back alignment and domain information

>TIGR00868 hCaCC calcium-activated chloride channel protein 1	Back alignment and domain information

>PRK13685 hypothetical protein; Provisional	Back alignment and domain information

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell	Back alignment and domain information

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)	Back alignment and domain information

>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax	Back alignment and domain information

>cd01477 vWA_F09G8-8_type VWA F09G8	Back alignment and domain information

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity	Back alignment and domain information

>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme	Back alignment and domain information

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration	Back alignment and domain information

>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A	Back alignment and domain information

>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology	Back alignment and domain information

>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions	Back alignment and domain information

>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain	Back alignment and domain information

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases	Back alignment and domain information

>smart00327 VWA von Willebrand factor (vWF) type A domain	Back alignment and domain information

>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma	Back alignment and domain information

>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions	Back alignment and domain information

>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors	Back alignment and domain information

>PRK13406 bchD magnesium chelatase subunit D; Provisional	Back alignment and domain information

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional	Back alignment and domain information

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D	Back alignment and domain information

>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]	Back alignment and domain information

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	Back alignment and domain information

>PRK15426 putative diguanylate cyclase YedQ; Provisional	Back alignment and domain information

>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]	Back alignment and domain information

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit	Back alignment and domain information

>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins	Back alignment and domain information

>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers	Back alignment and domain information

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>PRK10997 yieM hypothetical protein; Provisional	Back alignment and domain information

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family	Back alignment and domain information

>cd01458 vWA_ku Ku70/Ku80 N-terminal domain	Back alignment and domain information

>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts	Back alignment and domain information

>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain	Back alignment and domain information

>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function	Back alignment and domain information

>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown	Back alignment and domain information

>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>TIGR01651 CobT cobaltochelatase, CobT subunit	Back alignment and domain information

>cd01468 trunk_domain trunk domain	Back alignment and domain information

>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex	Back alignment and domain information

>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []	Back alignment and domain information

>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles	Back alignment and domain information

>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles	Back alignment and domain information

>KOG3768\|consensus	Back alignment and domain information

>KOG2353\|consensus	Back alignment and domain information

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56	Back alignment and domain information

>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway	Back alignment and domain information

>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins	Back alignment and domain information

>PRK05325 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02877 spore_yhbH sporulation protein YhbH	Back alignment and domain information

>KOG2807\|consensus	Back alignment and domain information

>PLN00162 transport protein sec23; Provisional	Back alignment and domain information

>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines	Back alignment and domain information

>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length	Back alignment and domain information

>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1327\|consensus	Back alignment and domain information

>COG2718 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]	Back alignment and domain information

>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells	Back alignment and domain information

>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors	Back alignment and domain information

>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region)	Back alignment and domain information

>KOG2884\|consensus	Back alignment and domain information

>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]	Back alignment and domain information

>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00627 tfb4 transcription factor tfb4	Back alignment and domain information

>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70)	Back alignment and domain information

>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair	Back alignment and domain information

>PTZ00395 Sec24-related protein; Provisional	Back alignment and domain information

>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK15426 putative diguanylate cyclase YedQ; Provisional	Back alignment and domain information

>KOG1985\|consensus	Back alignment and domain information

>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors	Back alignment and domain information

>KOG1984\|consensus	Back alignment and domain information

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]	Back alignment and domain information

>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4465\|consensus	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1986\|consensus	Back alignment and domain information

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>PF10388 YkuI_C: EAL-domain associated signalling protein domain; InterPro: IPR018842 In most cases this highly conserved region of the YkuI protein lies immediately downstream of the EAL (diguanylate cyclase/phosphodiesterase) domain IPR001633 from INTERPRO so that together they form a monomer which dimerises for its enzymatic action	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1061
3lia_A		291	Crystal Structure Of The Extracellular Domain Of Th		6e-06
3li8_A		291	Crystal Structure Of The Extracellular Domain Of Th		6e-05
3c8c_A		240	Crystal Structure Of Mcp_n And Cache Domains Of Met		9e-05
3lib_A		290	Crystal Structure Of The Extracellular Domain Of Th		3e-04

>pdb|3LIA|A Chain A, Crystal Structure Of The Extracellular Domain Of The Putative Histidine Kinase Mmhk1s-Z2 Length = 291

Back alignment and structure

Iteration: 1

Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 37/192 (19%) Query: 394 VMARPLIMYQTEHPLYWSSVYPGGKTNTLLASDVKEGKLMVSVSTPVFDKRNYTTRAANL 453 V+ PL+ Y + Y+ GK +TL EG MVS +P+F + Sbjct: 114 VIIEPLVHYDSSD--YYQLPKTTGK-DTLTEPYFYEGIFMVSYDSPIF-------KNGEF 163 Query: 454 LGVAAVDVPIQQIQKLVPQYKLGPNGYSFVVNNNGRIIYHPDFRPLYVERLKPNYNNVDL 513 G+A VDVP++ + + + GY+F+V+N G + HP + E+ + ++ D+ Sbjct: 164 AGIAGVDVPLEYVDDVASSIRTFDTGYAFMVSNTGIFLSHPTQKNWIGEK---SLSDFDV 220 Query: 514 SEVEIVDSEVYPRDNNSLLLDLRHDMIDQKEGETEFKVKLHYDEMRRVTSRRHRYFYHPI 573 E++ S++ +EG + H + +T + FY P+ Sbjct: 221 EEIKNAASDI-------------------REG-----IGGHVEIKDPITGKTVIMFYEPV 256 Query: 574 EGTPYSLGLALP 585 + +S L +P Sbjct: 257 KTGDFSFVLVVP 268

PyMOL of 3lia

>pdb|3LI8|A Chain A, Crystal Structure Of The Extracellular Domain Of The Putative Histidine Kinase Mmhk1s-Z2 Length = 291

Back alignment and structure

>pdb|3C8C|A Chain A, Crystal Structure Of Mcp_n And Cache Domains Of Methyl- Accepting Chemotaxis Protein From Vibrio Cholerae Length = 240

Back alignment and structure

>pdb|3LIB|A Chain A, Crystal Structure Of The Extracellular Domain Of The Putative Histidine Kinase Mmhk1s-Z3 Length = 290

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1061
4fx5_A		464	VON willebrand factor type A; structural genomics,	7e-19
3li9_A		291	Hypothetical sensory transduction histidine kinas;	9e-19
3lib_A		290	Hypothetical sensory transduction histidine kinas;	2e-18
3c8c_A		240	Methyl-accepting chemotaxis protein; structural ge	2e-16
3lic_A		274	Sensor protein; PDC fold, ATP-binding, kinase, nuc	8e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
4dah_A		217	Sporulation kinase D; alpha-beta-alpha structure,	7e-09
1q0p_A		223	Complement factor B; VON willebrand factor, MAC-1,	8e-05
1shu_X		182	Anthrax toxin receptor 2; alpha/beta rossmann fold	2e-04

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Length = 464	Back alignment and structure

 Score = 90.1 bits (223), Expect = 7e-19
 Identities = 33/195 (16%), Positives = 71/195 (36%), Gaps = 16/195 (8%)

Query: 201 SSAWFVEAATSPKDIVILLDAS---STLSTKHRNLARATINVILDTLGSNDFVNIFTFSD 257
           ++++   A+ S    VI++D S       TK    A+    V +DTL    F  +   ++
Sbjct: 66  AASYGAPASGSENVEVIIIDCSGSMDYPRTK-MMAAKEATKVAIDTLTDGAFFAVVAGTE 124

Query: 258 VTVELVPCYREMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKY-NRTNQG 316
               + P     L++A  +++   K A+  +  +        LA A  I     +     
Sbjct: 125 GARVVYPT-GGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKH- 182

Query: 317 CQCNQAIMLVSSGPPSA--FKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGY 374
                  +L++ G   +    ++ +               IG+     E++++A +  G 
Sbjct: 183 ------AILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELRKIADALLGT 236

Query: 375 FEFIKNTDRLRMKVF 389
              I++   L  + F
Sbjct: 237 VGIIRDPATLA-EDF 250

PyMOL of 4fx5

>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A* Length = 291	Back alignment and structure

>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei} Length = 290	Back alignment and structure

>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str} Length = 240	Back alignment and structure

>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis} Length = 274	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Length = 223	Back alignment and structure

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Length = 182	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1061
4fx5_A		464	VON willebrand factor type A; structural genomics,	99.81
1q0p_A		223	Complement factor B; VON willebrand factor, MAC-1,	99.78
1ijb_A		202	VON willebrand factor; dinucleotide-binding fold,	99.77
4hqf_A		281	Thrombospondin-related anonymous protein, trap; ma	99.74
4hqo_A		266	Sporozoite surface protein 2; malaria, gliding mot	99.74
3ibs_A		218	Conserved hypothetical protein BATB; structural ge	99.73
3zqk_A		199	VON willebrand factor; blood clotting, adamts-13,	99.72
1mf7_A		194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	99.72
2xgg_A		178	Microneme protein 2; A/I domain, cell adhesion, hy	99.71
2b2x_A		223	Integrin alpha-1; computational design, antibody-a	99.7
1n3y_A		198	Integrin alpha-X; alpha/beta rossmann fold, cell a	99.7
1pt6_A		213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	99.69
1atz_A		189	VON willebrand factor; collagen-binding, hemostasi	99.69
2odp_A		509	Complement C2; C3/C5 convertase, complement serin	99.69
1mjn_A		179	Integrin alpha-L; rossmann fold, immune system; 1.	99.68
1v7p_C		200	Integrin alpha-2; snake venom, C-type lectin, anta	99.68
2x31_A		189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	99.68
3n2n_F		185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	99.68
1shu_X		182	Anthrax toxin receptor 2; alpha/beta rossmann fold	99.67
1rrk_A		497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	99.65
3hrz_D		741	Complement factor B; serine protease, glycosilated	99.64
3lif_A		254	Putative diguanylate cyclase (ggdef) with PAS/PAC;	99.55
3li9_A		291	Hypothetical sensory transduction histidine kinas;	99.53
3lib_A		290	Hypothetical sensory transduction histidine kinas;	99.52
3lic_A		274	Sensor protein; PDC fold, ATP-binding, kinase, nuc	99.48
4b4t_W		268	RPN10, 26S proteasome regulatory subunit RPN10; hy	99.48
3c8c_A		240	Methyl-accepting chemotaxis protein; structural ge	99.46
2x5n_A		192	SPRPN10, 26S proteasome regulatory subunit RPN10;	99.43
3k6s_A		1095	Integrin alpha-X; cell receptor, adhesion molecule	99.41
3lid_A		295	Putative sensory BOX/ggdef family protein; PDC fol	99.14
2ww8_A		893	RRGA, cell WALL surface anchor family protein; IGG	99.11
3by9_A		260	Sensor protein; histidine kinase sensor domain, ph	99.1
4dah_A		217	Sporulation kinase D; alpha-beta-alpha structure,	99.09
1jey_B		565	KU80; double-strand DNA break repair, non-homologo	98.99
1yvr_A		538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	98.91
3rag_A		242	Uncharacterized protein; structural genomics, PSI-	98.81
1jey_A		609	KU70; double-strand DNA break repair, non-homologo	98.61
2nvo_A		535	RO sixty-related protein, RSR; alpha helical repea	98.58
3e4o_A		305	C4-dicarboxylate transport sensor protein DCTB; PA	98.29
2qhk_A		174	Methyl-accepting chemotaxis protein; structural ge	98.14
2nut_A		769	Protein transport protein SEC23A; human copii SEC2	97.85
4exo_A		146	Methyl-accepting chemotaxis protein; signaling pro	97.61
2iue_A		212	Pactolus I-domain; membrane protein, CD, ITC, limb	97.61
1pcx_A		810	Protein transport protein SEC24; 2.50A {Saccharomy	97.38
3ub6_A		181	Chemoreceptor TLPB; homodimer, four-helix bundle,	97.27
1m2o_A		768	SEC23, protein transport protein SEC23, SEC23P; zi	97.26
3rag_A		242	Uncharacterized protein; structural genomics, PSI-	96.9
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	96.79
3fcs_B		690	Integrin beta-3; beta propeller, rossmann fold, EG	96.72
3eh1_A		751	Protein transport protein SEC24B; copii coat prote	96.58
3t3p_B		472	Integrin beta-3; integrin, cell adhesion, blood cl	96.45
3efo_B		770	SEC24 related gene family, member D; copii, coat p	96.43
3eh2_A		766	Protein transport protein SEC24C; copii-coat prote	96.3
3vi3_B		454	Integrin beta-1; beta propeller fold, rossman fold	96.24
3lic_A		274	Sensor protein; PDC fold, ATP-binding, kinase, nuc	96.19
3k6s_B		687	Integrin beta-2; cell receptor, adhesion molecule,	96.02
3v4v_B		503	Integrin beta-7; cell adhesion, madcam-1, membrane	96.01
3c8c_A		240	Methyl-accepting chemotaxis protein; structural ge	96.0
3lib_A		290	Hypothetical sensory transduction histidine kinas;	95.81
3li9_A		291	Hypothetical sensory transduction histidine kinas;	95.61
4dah_A		217	Sporulation kinase D; alpha-beta-alpha structure,	95.37
3lif_A		254	Putative diguanylate cyclase (ggdef) with PAS/PAC;	95.37
3by9_A		260	Sensor protein; histidine kinase sensor domain, ph	95.12
3e4o_A		305	C4-dicarboxylate transport sensor protein DCTB; PA	94.84
2bas_A		431	YKUI protein; EAL domain, structural genom protein	93.81
3lid_A		295	Putative sensory BOX/ggdef family protein; PDC fol	92.8

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}	Back alignment and structure

Probab=99.81  E-value=9.9e-20  Score=214.96  Aligned_cols=181  Identities=16%  Similarity=0.152  Sum_probs=151.5

Q ss_pred             CCCceEEEEEccCCCCC--cchHHHHHHHHHHHHHHcCCCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhc
Q psy17515        210 TSPKDIVILLDASSTLS--TKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALAN  287 (1061)
Q Consensus       210 ~~pkdVVILlD~SGSM~--g~~l~~aK~a~~~iLdtL~~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~  287 (1061)
                      ..|.+|+||||+||||.  |.+++.+|+++..+++.|.++|+|+||.|++.+..+.|.. ..+.+++..+++.++.+|+.
T Consensus        75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t-~~l~~~~~~~~~~l~~~I~~  153 (464)
T 4fx5_A           75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTG-GQLLRADYQSRAAAKEAVGR  153 (464)
T ss_dssp             -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSS-SSCEECSHHHHHHHHHHHHT
T ss_pred             CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCC-cccccCCHHHHHHHHHHHHc
Confidence            46899999999999999  9999999999999999999999999999999999877642 34778889999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHHHHhcccCCCCCCCceEEEEEeCCCCCcH--HHHHHhhCCCCCCeeEEEEEecCCchhhhhh
Q psy17515        288 VKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVSSGPPSAF--KEVFKHYNWPHMPVRLFSYLIGKSSNYAEMK  365 (1061)
Q Consensus       288 l~~~G~Tnl~~AL~~A~~~L~~~~~~~~~~~~~~~IvLlTDG~~~~~--~~i~~~~n~~~~~VrIfTigIG~~~d~~~L~  365 (1061)
                      +.+.|+|++..||..|+++|...      +...+.|||||||.++..  ..+.........+++||+||||.+.+...|+
T Consensus       154 L~~~GgT~l~~aL~~A~~~l~~~------~~~~~~IILLTDG~~~~~~~~~l~~~~~a~~~~i~i~tiGiG~~~d~~~L~  227 (464)
T 4fx5_A          154 LHANGGTAMGRWLAQAGRIFDTA------PSAIKHAILLTDGKDESETPADLARAIQSSIGNFTADCRGIGEDWEPKELR  227 (464)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHTTC------TTSEEEEEEEESSCCTTSCHHHHHHHHHHHTTTCEEEEEEESSSSCHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHhcC------CCCCCEEEEEcCCCCCCCChHHHHHHHHHhcCCCeEEEEEeCCccCHHHHH
Confidence            99999999999999999999762      235679999999999843  1222222212457999999999999999999


Q ss_pred             hhhccCCccceeeeccccccceeeeeeeeccc
Q psy17515        366 QMACSNKGYFEFIKNTDRLRMKVFNYVLVMAR  397 (1061)
Q Consensus       366 ~IA~~ngG~y~~I~~~~dv~e~v~~y~d~lar  397 (1061)
                      .||..++|.|+.+.+.+++...+.+.+..+..
T Consensus       228 ~IA~~tgG~~~~v~d~~~L~~~f~~i~~~~~s  259 (464)
T 4fx5_A          228 KIADALLGTVGIIRDPATLAEDFREMTAKSMG  259 (464)
T ss_dssp             HHHHHTTCCEEEESSGGGHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCEEEEcCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999988877666554444433

PyMOL of 4fx5

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1	Back alignment and structure

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C	Back alignment and structure

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A	Back alignment and structure

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*	Back alignment and structure

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*	Back alignment and structure

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G	Back alignment and structure

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}	Back alignment and structure

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1	Back alignment and structure

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1	Back alignment and structure

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A	Back alignment and structure

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A	Back alignment and structure

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*	Back alignment and structure

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...	Back alignment and structure

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A	Back alignment and structure

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}	Back alignment and structure

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1	Back alignment and structure

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*	Back alignment and structure

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A	Back alignment and structure

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*	Back alignment and structure

>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}	Back alignment and structure

>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*	Back alignment and structure

>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}	Back alignment and structure

>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}	Back alignment and structure

>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}	Back alignment and structure

>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}	Back alignment and structure

>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*	Back alignment and structure

>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*	Back alignment and structure

>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}	Back alignment and structure

>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}	Back alignment and structure

>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*	Back alignment and structure

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A	Back alignment and structure

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B	Back alignment and structure

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}	Back alignment and structure

>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A	Back alignment and structure

>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2, MCSG, protein structur initiative; 1.91A {Vibrio parahaemolyticus}	Back alignment and structure

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A	Back alignment and structure

>4exo_A Methyl-accepting chemotaxis protein; signaling protein, chemotaxis receptor, PAS domain, four HEL bundle; HET: MSE; 1.90A {Vibrio parahaemolyticus}	Back alignment and structure

>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}	Back alignment and structure

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A	Back alignment and structure

>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*	Back alignment and structure

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*	Back alignment and structure

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1	Back alignment and structure

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*	Back alignment and structure

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B	Back alignment and structure

>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*	Back alignment and structure

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B	Back alignment and structure

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}	Back alignment and structure

>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*	Back alignment and structure

>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}	Back alignment and structure

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*	Back alignment and structure

>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*	Back alignment and structure

>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}	Back alignment and structure

>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}	Back alignment and structure

>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*	Back alignment and structure

>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}	Back alignment and structure

>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}	Back alignment and structure

>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A	Back alignment and structure

>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*	Back alignment and structure

>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1061
d1shux_		181	c.62.1.1 (X:) Capillary morphogenesis protein 2 do	1e-07
d1atza_		184	c.62.1.1 (A:) von Willebrand factor A3 domain, vWA	3e-07
d1q0pa_		209	c.62.1.1 (A:) Complement factor B domain {Human (H	1e-05
d1ijba_		202	c.62.1.1 (A:) von Willebrand factor A1 domain, vWA	4e-05
d1mf7a_		194	c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, M	0.001

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 181	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 20/178 (11%), Positives = 49/178 (27%), Gaps = 8/178 (4%)

Query: 208 AATSPKDIVILLDASSTLSTKHRNLARATINVILDTLGSNDFVNIFTFSDVTVELVPCYR 267
           +     D+  +LD S +++     +      +    +     ++   FS     ++P   
Sbjct: 1   SCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG 60

Query: 268 EMLVQATDENKRTLKAALANVKGDNVANFTGALATAFEILHKYNRTNQGCQCNQAIMLVS 327
           +                L  V           L  A E + K                  
Sbjct: 61  DR------GKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKL 114

Query: 328 SGPPSAFKEVFKHYNWPHMPVRLFSYLIGKSSNYAEMKQMACSNKGYFEFIKNTDRLR 385
            G   ++ E  +      +   ++   +      A+++++A S +  F        L+
Sbjct: 115 DGLVPSYAEK-EAKISRSLGASVYCVGVL-DFEQAQLERIADSKEQVFPVKGGFQALK 170

PyMOL of d1shux_

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184	Back information, alignment and structure

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Length = 209	Back information, alignment and structure

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 202	Back information, alignment and structure

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Length = 194	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1061
d1q0pa_		209	Complement factor B domain {Human (Homo sapiens) [	99.7
d1atza_		184	von Willebrand factor A3 domain, vWA3 {Human (Homo	99.65
d1shux_		181	Capillary morphogenesis protein 2 domain {Human (H	99.64
d1n3ya_		189	Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI	99.54
d1mf7a_		194	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub	99.54
d1mjna_		179	Integrin CD11a/CD18 (Leukocyte function associated	99.53
d1ijba_		202	von Willebrand factor A1 domain, vWA1 {Human (Homo	99.53
d1pt6a_		192	Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId	99.45
d1v7pc_		193	Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId	99.43
d1jeya2		220	Ku70 subunit N-terminal domain {Human (Homo sapien	99.26
d1jeyb2		236	Ku80 subunit N-terminal domain {Human (Homo sapien	99.22
d1yvra2		174	60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c	99.08
d1tyeb2		248	Integrin beta A domain {Human (Homo sapiens) [TaxI	98.3
d1pd0a3		252	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	97.88
d2qtva3		271	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	97.8
d2basa2		145	Hypothetical protein YkuI, C-terminal domain {Baci	97.04
d2p7ja2		172	GGDEF family protein VP0354 {Vibrio parahaemolytic	95.67
d2basa2		145	Hypothetical protein YkuI, C-terminal domain {Baci	84.74

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.6e-17  Score=166.41  Aligned_cols=170  Identities=12%  Similarity=0.165  Sum_probs=127.2

Q ss_pred             ceEEEEEccCCCCCcchHHHHHHHHHHHHHHcC---CCCEEEEEEEcCceeeeeccccccccccCHHhHHHHHHHHhcCC
Q psy17515        213 KDIVILLDASSTLSTKHRNLARATINVILDTLG---SNDFVNIFTFSDVTVELVPCYREMLVQATDENKRTLKAALANVK  289 (1061)
Q Consensus       213 kdVVILlD~SGSM~g~~l~~aK~a~~~iLdtL~---~~D~v~Vv~Fs~~~~~~~~c~~~~lv~at~~n~~~lk~~I~~l~  289 (1061)
                      -||+||||.||||.+.+++.+|.+++.+++.|.   .+++|+|++|++.++..++     +.+....+...+...|+++.
T Consensus         2 lDivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~~~~~~~-----l~~~~~~~~~~l~~~i~~i~   76 (209)
T d1q0pa_           2 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLNEIN   76 (209)
T ss_dssp             EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHHTCC
T ss_pred             cCEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCceeEEec-----CccchhhHHHHHHHHHHHhh
Confidence            589999999999999999999999999999884   6789999999999887553     44445567788888898874


Q ss_pred             -----CCCCcchHHHHHHHHHHHHhcccCC--CCCCCceEEEEEeCCCCCcH---HH---HHHhh-C-------CCCCCe
Q psy17515        290 -----GDNVANFTGALATAFEILHKYNRTN--QGCQCNQAIMLVSSGPPSAF---KE---VFKHY-N-------WPHMPV  348 (1061)
Q Consensus       290 -----~~G~Tnl~~AL~~A~~~L~~~~~~~--~~~~~~~~IvLlTDG~~~~~---~~---i~~~~-n-------~~~~~V  348 (1061)
                           .+|+|++..||+.|++.+.......  ..++..++|||+|||.++.+   ..   .+... .       ....+|
T Consensus        77 ~~~~~~~g~t~~~~al~~a~~~~~~~~~~~~~~~~~~~kvvvl~TDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  156 (209)
T d1q0pa_          77 YEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYL  156 (209)
T ss_dssp             TTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGE
T ss_pred             hccccCCCCchHHHHHHHHHHHHHhhhccCccccCCCceEEEEEcCCCccCCCChHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence                 5788999999999999997654321  22346789999999998753   11   11111 1       134579


Q ss_pred             eEEEEEecCCchhhhhhhhhccCCcc--ceeeeccccccce
Q psy17515        349 RLFSYLIGKSSNYAEMKQMACSNKGY--FEFIKNTDRLRMK  387 (1061)
Q Consensus       349 rIfTigIG~~~d~~~L~~IA~~ngG~--y~~I~~~~dv~e~  387 (1061)
                      .||++|+|.+.+...|+.||...+|.  ++.+.+..++.+.
T Consensus       157 ~i~~vgvg~~~~~~~L~~iAs~~~~~~~~f~~~~~~~L~~~  197 (209)
T d1q0pa_         157 DVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDV  197 (209)
T ss_dssp             EEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC-------
T ss_pred             ceEEecCCccCCHHHHHHHHcCCCCCeeEEEeCCHHHHHHH
Confidence            99999999999999999999877663  5556665555443

PyMOL of d1q0pa_

>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2basa2 d.110.6.2 (A:263-407) Hypothetical protein YkuI, C-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}	Back information, alignment and structure

>d2basa2 d.110.6.2 (A:263-407) Hypothetical protein YkuI, C-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure