Psyllid ID: psy17526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MNAHSDRCQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEEEEEcEHHHHcccccccHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mnahsdrcqhglgnfgkleGKIQMLVFCLVSGLyswcqgcshgghlsHMQEWFmknnvcptgcghycesf
Flexible Loop (DISEMBL)
mnahsdrcqhglgnfgkleGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Low Complexity Region (SEG)
MNAHSDRCQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Disordered region (IsUnstruct)
*********HGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC***
Disordered Region (DISOPRED)
*****D*CQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Disordered Region (DISEMBL)
********QHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Disordered Region (DISPRO)
******RC*HGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNAHSDRCQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCESF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q54JS5	1023	WD repeat-containing prot	yes	N/A	0.585	0.040	0.581	1e-11
Q96S15	920	WD repeat-containing prot	yes	N/A	0.571	0.043	0.6	3e-11
Q8CFJ9	790	WD repeat-containing prot	yes	N/A	0.571	0.050	0.6	3e-11
Q7ZVL2	779	WD repeat-containing prot	yes	N/A	0.571	0.051	0.625	4e-10
Q5ZMV9	705	WD repeat-containing prot	yes	N/A	0.571	0.056	0.6	2e-09
Q7ZX22	780	WD repeat-containing prot	N/A	N/A	0.571	0.051	0.6	8e-09
Q8C0M0	992	WD repeat-containing prot	no	N/A	0.542	0.038	0.578	1e-08
Q6PJI9	974	WD repeat-containing prot	no	N/A	0.542	0.039	0.578	1e-08
Q5ZLG9	973	WD repeat-containing prot	no	N/A	0.542	0.039	0.578	1e-08
Q54DS4	1823	WD repeat-containing prot	no	N/A	0.871	0.033	0.430	5e-08

>sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog OS=Dictyostelium discoideum GN=wdr24 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 30   VSGLYSWCQGCSHGGHLSHMQEWFMKNN--VCPTGCGHYCESF 70
            V G++ WCQGC HGGHL HM+ WF+  N   CPTGC H C  F
Sbjct: 979  VKGMWVWCQGCGHGGHLEHMKSWFIDKNQKSCPTGCTHICTPF 1021

Dictyostelium discoideum (taxid: 44689)

>sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct: 879 VVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 918

Homo sapiens (taxid: 9606)

>sp|Q8CFJ9|WDR24_MOUSE WD repeat-containing protein 24 OS=Mus musculus GN=Wdr24 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct: 749 VVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 788

Mus musculus (taxid: 10090)

>sp|Q7ZVL2|WDR24_DANRE WD repeat-containing protein 24 OS=Danio rerio GN=wdr24 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V GL+ WCQGCSHGGHL H+ EW  ++  CP GCGH CE
Sbjct: 738 VVKGLFVWCQGCSHGGHLEHVMEWLKQSKHCPAGCGHLCE 777

Danio rerio (taxid: 7955)

>sp|Q5ZMV9|WDR24_CHICK WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct: 664 VVKGLFVWCQGCSHGGHLQHIMKWLETSSHCPAGCGHLCE 703

Gallus gallus (taxid: 9031)

>sp|Q7ZX22|WDR24_XENLA WD repeat-containing protein 24 OS=Xenopus laevis GN=wdr24 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 27/40 (67%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V GL+ WCQGC HGGHL H+  W   N  CP GCGH CE
Sbjct: 739 VVKGLFVWCQGCCHGGHLQHIMNWMQNNCYCPAGCGHVCE 778

Xenopus laevis (taxid: 8355)

>sp|Q8C0M0|WDR59_MOUSE WD repeat-containing protein 59 OS=Mus musculus GN=Wdr59 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 30  VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
           V G  ++C  C HGGH SHM EWF    VCPTGCG +C
Sbjct: 949 VRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHC 986

Mus musculus (taxid: 10090)

>sp|Q6PJI9|WDR59_HUMAN WD repeat-containing protein 59 OS=Homo sapiens GN=WDR59 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 30  VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
           V G  ++C  C HGGH SHM EWF    VCPTGCG +C
Sbjct: 931 VRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHC 968

Homo sapiens (taxid: 9606)

>sp|Q5ZLG9|WDR59_CHICK WD repeat-containing protein 59 OS=Gallus gallus GN=WDR59 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 25/38 (65%)

Query: 30  VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYC 67
           V G  ++C  C HGGH SHM EWF    VCPTGCG +C
Sbjct: 930 VRGSSNFCLTCGHGGHTSHMMEWFRTQEVCPTGCGCHC 967

Gallus gallus (taxid: 9031)

>sp|Q54DS4|Y2056_DICDI WD repeat-containing protein DDB_G0292056 OS=Dictyostelium discoideum GN=DDB_G0292056 PE=4 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 7    RCQHGLGNFGKLEGKIQML--VFCLVS--GLYSWCQGCSHGGHLSHMQEWFMKNNVCPTG 62
            +C   L NF     KI  +    C +S  GL S+C  C HGGH +H++ WF K   CPTG
Sbjct: 1599 KCNRKLNNFYCNNCKIYAVKCSICNISVRGLSSFCLYCGHGGHTNHIKGWFEKQTKCPTG 1658

Query: 63   CGHYC 67
            CG  C
Sbjct: 1659 CGCTC 1663

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
193697577	762	PREDICTED: WD repeat-containing protein	0.571	0.052	0.65	2e-13
322796275	784	hypothetical protein SINV_80416 [Solenop	0.571	0.051	0.7	2e-13
405960147	764	WD repeat-containing protein 24 [Crassos	0.942	0.086	0.472	6e-13
328780147	769	PREDICTED: WD repeat-containing protein	0.571	0.052	0.675	6e-13
380023046	769	PREDICTED: WD repeat-containing protein	0.571	0.052	0.675	8e-13
320167393	1118	WD repeat domain-containing protein [Cap	0.557	0.034	0.666	8e-13
345490329	779	PREDICTED: WD repeat-containing protein	0.571	0.051	0.675	8e-13
321468086	728	hypothetical protein DAPPUDRAFT_52862 [D	0.628	0.060	0.659	9e-13
332024844	923	WD repeat-containing protein 24 [Acromyr	0.571	0.043	0.675	9e-13
307173002	785	WD repeat-containing protein 24 [Campono	0.571	0.050	0.65	3e-12

>gi|193697577|ref|XP_001948167.1| PREDICTED: WD repeat-containing protein 24-like [Acyrthosiphon pisum]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 36/40 (90%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y+WC+GC+HGGH++HM++WFM+N  CPTGCGH CE
Sbjct: 722 IVRGMYAWCRGCAHGGHIAHMKQWFMENKYCPTGCGHMCE 761

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796275|gb|EFZ18851.1| hypothetical protein SINV_80416 [Solenopsis invicta]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y WCQGC+HGGH++HM+EWF KN  CPTGCGH CE
Sbjct: 743 VVRGIYVWCQGCAHGGHINHMREWFNKNRQCPTGCGHLCE 782

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405960147|gb|EKC26092.1| WD repeat-containing protein 24 [Crassostrea gigas]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 8/74 (10%)

Query: 1   MNAHSDRCQHGLGNFGKLEGKIQMLV------FCLVSGLYSWCQGCSHGGHLSHMQEWFM 54
           +N H  RC   L   G L  + ++++         V GL+ WCQGCSHGGHL H++EWF 
Sbjct: 691 VNCH--RCNRPLQRVGWLCDRCKLVINNCSVCHLPVKGLFIWCQGCSHGGHLGHIKEWFG 748

Query: 55  KNNVCPTGCGHYCE 68
           +N  CPTGCGH CE
Sbjct: 749 ENKQCPTGCGHLCE 762

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|328780147|ref|XP_397394.3| PREDICTED: WD repeat-containing protein 24-like [Apis mellifera]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y+WCQGC+HGGH+ HM EWF +N  CPTGCGH CE
Sbjct: 728 VVRGIYAWCQGCTHGGHVVHMNEWFSRNRQCPTGCGHICE 767

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023046|ref|XP_003695341.1| PREDICTED: WD repeat-containing protein 24-like [Apis florea]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y+WCQGC+HGGH+ HM EWF +N  CPTGCGH CE
Sbjct: 728 VVRGIYAWCQGCTHGGHVIHMNEWFSRNRQCPTGCGHICE 767

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320167393|gb|EFW44292.1| WD repeat domain-containing protein [Capsaspora owczarzaki ATCC 30864]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 30   VSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
            V GLY WCQGC HGGH++HMQ+WF K+ +CP GC H+CE
Sbjct: 1078 VKGLYVWCQGCGHGGHITHMQDWFSKHTLCPAGCLHHCE 1116

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

>gi|345490329|ref|XP_001605545.2| PREDICTED: WD repeat-containing protein 24-like [Nasonia vitripennis]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y+WCQGC+HGGH++HM EWF  N  CPTGCGH CE
Sbjct: 738 VVRGIYAWCQGCTHGGHVNHMSEWFNSNKQCPTGCGHMCE 777

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468086|gb|EFX79073.1| hypothetical protein DAPPUDRAFT_52862 [Daphnia pulex]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query: 25  LVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           L   +V GLY WC+GCSHGGHL H++EWF +N+ CPTGCGH CE
Sbjct: 683 LCHLVVRGLYVWCRGCSHGGHLLHIREWFSRNSACPTGCGHVCE 726

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024844|gb|EGI65032.1| WD repeat-containing protein 24 [Acromyrmex echinatior]

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y WCQGC+HGGH++HM+EWF  N  CPTGCGH CE
Sbjct: 882 VVRGIYVWCQGCAHGGHINHMREWFNNNRQCPTGCGHLCE 921

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173002|gb|EFN64144.1| WD repeat-containing protein 24 [Camponotus floridanus]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 29  LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
           +V G+Y WCQGC+HGGH++HM+EWF  N  CP GCGH CE
Sbjct: 744 VVRGMYVWCQGCAHGGHINHMREWFNGNRQCPAGCGHLCE 783

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
ZFIN|ZDB-GENE-040426-2012	779	wdr24 "WD repeat domain 24" [D	0.571	0.051	0.625	5.6e-12
UNIPROTKB|Q5ZMV9	705	WDR24 "WD repeat-containing pr	0.971	0.096	0.391	1e-11
UNIPROTKB|F1PFU7	705	WDR24 "Uncharacterized protein	0.642	0.063	0.553	2.1e-11
UNIPROTKB|F1MJS7	790	WDR24 "Uncharacterized protein	0.642	0.056	0.553	2.5e-11
UNIPROTKB|F1RG37	790	WDR24 "Uncharacterized protein	0.642	0.056	0.553	2.5e-11
MGI|MGI:2446285	790	Wdr24 "WD repeat domain 24" [M	0.642	0.056	0.553	2.5e-11
UNIPROTKB|G3V8L0	790	Wdr24 "RCG32838" [Rattus norve	0.642	0.056	0.553	2.5e-11
UNIPROTKB|Q96S15	920	WDR24 "WD repeat-containing pr	0.642	0.048	0.553	3.1e-11
UNIPROTKB|I3LF05	928	WDR24 "Uncharacterized protein	0.642	0.048	0.553	3.1e-11
DICTYBASE|DDB_G0287817	1023	wdr24 "WD40 repeat-containing	0.585	0.040	0.581	1.2e-10

ZFIN|ZDB-GENE-040426-2012 wdr24 "WD repeat domain 24" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query:    29 LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             +V GL+ WCQGCSHGGHL H+ EW  ++  CP GCGH CE
Sbjct:   738 VVKGLFVWCQGCSHGGHLEHVMEWLKQSKHCPAGCGHLCE 777

GO:0005777 "peroxisome" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

UNIPROTKB|Q5ZMV9 WDR24 "WD repeat-containing protein 24" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query:     1 MNAHSDRCQHGLGNFGKLEGKIQ----MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFM 54
             ++ +   C+  + N G +  + +    M   C  +V GL+ WCQGCSHGGHL H+ +W  
Sbjct:   630 LHINCSNCKRPMSNRGWICDRCRQCASMCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLE 689

Query:    55 KNNVCPTGCGHYCE 68
              ++ CP GCGH CE
Sbjct:   690 TSSHCPAGCGHLCE 703

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

UNIPROTKB|F1PFU7 WDR24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   657 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 703

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

UNIPROTKB|F1MJS7 WDR24 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   742 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 788

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

UNIPROTKB|F1RG37 WDR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   742 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 788

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

MGI|MGI:2446285 Wdr24 "WD repeat domain 24" [Mus musculus (taxid:10090)]

 Score = 167 (63.8 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   742 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 788

GO:0003674 "molecular_function" evidence=ND

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005777 "peroxisome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

UNIPROTKB|G3V8L0 Wdr24 "RCG32838" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   742 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 788

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

UNIPROTKB|Q96S15 WDR24 "WD repeat-containing protein 24" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   872 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 918

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

UNIPROTKB|I3LF05 WDR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query:    24 MLVFC--LVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCE 68
             M   C  +V GL+ WCQGCSHGGHL H+ +W   ++ CP GCGH CE
Sbjct:   880 MCAVCHHVVKGLFVWCQGCSHGGHLQHIMKWLEGSSHCPAGCGHLCE 926

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

DICTYBASE|DDB_G0287817 wdr24 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 25/43 (58%), Positives = 29/43 (67%)

Query:    30 VSGLYSWCQGCSHGGHLSHMQEWFMKNNV--CPTGCGHYCESF 70
             V G++ WCQGC HGGHL HM+ WF+  N   CPTGC H C  F
Sbjct:   979 VKGMWVWCQGCGHGGHLEHMKSWFIDKNQKSCPTGCTHICTPF 1021

GO:0016558 "protein import into peroxisome matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005053 "peroxisome matrix targeting signal-2 binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CFJ9	WDR24_MOUSE	No assigned EC number	0.6	0.5714	0.0506	yes	N/A
Q54JS5	WDR24_DICDI	No assigned EC number	0.5813	0.5857	0.0400	yes	N/A
Q96S15	WDR24_HUMAN	No assigned EC number	0.6	0.5714	0.0434	yes	N/A
Q7ZVL2	WDR24_DANRE	No assigned EC number	0.625	0.5714	0.0513	yes	N/A
P38164	SEA4_YEAST	No assigned EC number	0.5142	0.4857	0.0327	yes	N/A
Q5ZMV9	WDR24_CHICK	No assigned EC number	0.6	0.5714	0.0567	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG0269|consensus	839		99.44
KOG0309|consensus	1081		99.25
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.57
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.38
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.42
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	95.88
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	95.82
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	95.57
PHA02929	238	N1R/p28-like protein; Provisional	95.37
KOG2930|consensus	114		94.75
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.48
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	93.9
PF13248	26	zf-ribbon_3: zinc-ribbon domain	93.76
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	93.21
KOG0802|consensus	543		92.88
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	92.83
KOG4628|consensus	348		92.58
PF12773	50	DZR: Double zinc ribbon	92.2
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	91.71
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	91.49
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	90.53
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	89.41
KOG0827|consensus	465		87.85
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	87.54
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	87.05
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	86.75
PF14634	44	zf-RING_5: zinc-RING finger domain	86.08
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	85.87
COG5219	1525	Uncharacterized conserved protein, contains RING Z	84.65
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	84.53
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	83.85
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	80.93
PHA02926	242	zinc finger-like protein; Provisional	80.6
KOG0317|consensus	293		80.42

>KOG0269|consensus

Probab=99.44  E-value=4.4e-14  Score=109.54  Aligned_cols=69  Identities=28%  Similarity=0.624  Sum_probs=61.7

Q ss_pred             CcccCccCCCCCCcC-ccccccch-------HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC-CCCccccC
Q psy17526          1 MNAHSDRCQHGLGNF-GKLEGKIQ-------MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT-GCGHYCES   69 (70)
Q Consensus         1 ~~~~C~~C~~~l~~~-~~~C~~~~-------~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~-gC~c~C~~   69 (70)
                      |.+.|++|++++... .|+|+++.       ++|+++|+|+++||+.|+|+||.+|++.||..+..||. +||+.|.+
T Consensus       752 i~~~~~nc~a~~~~~~~~~c~rc~s~a~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~~  829 (839)
T KOG0269|consen  752 IHYACPNCDAPMVLTKLWQCDRCESRASAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCHY  829 (839)
T ss_pred             eeccccccCCccccccceeechHHHHhhcCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccccc
Confidence            346899999999544 38999954       78999999999999999999999999999999999998 79999975

>KOG0309|consensus

Probab=99.25  E-value=1.8e-12  Score=101.21  Aligned_cols=46  Identities=41%  Similarity=0.917  Sum_probs=44.5

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCCCCCccccC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPTGCGHYCES   69 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~gC~c~C~~   69 (70)
                      +||+..|+|+..+|.+|+|+||.+|++|||....+||+||||.|.+
T Consensus      1032 ~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~CpsGCGC~C~~ 1077 (1081)
T KOG0309|consen 1032 AICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPSGCGCHCLL 1077 (1081)
T ss_pred             eeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCCCCCcCchh
Confidence            8999999999999999999999999999999999999999999964

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.57  E-value=1.6e-05  Score=41.38  Aligned_cols=37  Identities=30%  Similarity=0.508  Sum_probs=27.0

Q ss_pred             HHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         25 LVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        25 iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ||.+.+. +-.+.-+.|+|..|.+++++|++++..||+
T Consensus         5 IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~   42 (44)
T PF13639_consen    5 ICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPV   42 (44)
T ss_dssp             TTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TT
T ss_pred             CCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCc
Confidence            4544442 334445569999999999999999999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.38  E-value=0.0001  Score=42.62  Aligned_cols=27  Identities=30%  Similarity=0.652  Sum_probs=22.9

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.=..|+|..|.++|++|+..+.+||+
T Consensus        45 i~~~~C~H~FH~~Ci~~Wl~~~~~CP~   71 (73)
T PF12678_consen   45 IVWGPCGHIFHFHCISQWLKQNNTCPL   71 (73)
T ss_dssp             EEEETTSEEEEHHHHHHHHTTSSB-TT
T ss_pred             eEecccCCCEEHHHHHHHHhcCCcCCC
Confidence            334569999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.42  E-value=0.0029  Score=31.31  Aligned_cols=26  Identities=27%  Similarity=0.531  Sum_probs=22.4

Q ss_pred             cccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         36 WCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        36 ~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .-..|+|..|.+++++|++. ...||.
T Consensus        14 ~~~~C~H~~c~~C~~~~~~~~~~~Cp~   40 (45)
T cd00162          14 VLLPCGHVFCRSCIDKWLKSGKNTCPL   40 (45)
T ss_pred             EecCCCChhcHHHHHHHHHhCcCCCCC
Confidence            34569999999999999998 778997

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=95.88  E-value=0.0064  Score=36.59  Aligned_cols=23  Identities=30%  Similarity=0.693  Sum_probs=21.5

Q ss_pred             CCCCCChHHHHHHHHhCCCCCCC
Q psy17526         39 GCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        39 ~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .|.|..|.+++..|++...+||.
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPl   75 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPL   75 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCC
Confidence            39999999999999999999995

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=95.82  E-value=0.0035  Score=31.72  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             HHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         25 LVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        25 iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ||.+.++. .+.-..|||....+++++|+++...||+
T Consensus         3 iC~~~~~~-~~~~~~CGH~fC~~C~~~~~~~~~~CP~   38 (39)
T PF13923_consen    3 ICLDELRD-PVVVTPCGHSFCKECIEKYLEKNPKCPV   38 (39)
T ss_dssp             TTTSB-SS-EEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred             CCCCcccC-cCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence            34444444 3457899999999999999999888986

>smart00184 RING Ring finger

Probab=95.57  E-value=0.014  Score=27.73  Aligned_cols=25  Identities=32%  Similarity=0.678  Sum_probs=21.1

Q ss_pred             ccCCCCCChHHHHHHHHh-CCCCCCC
Q psy17526         37 CQGCSHGGHLSHMQEWFM-KNNVCPT   61 (70)
Q Consensus        37 C~~C~HggH~~h~~~Wf~-~~~~CP~   61 (70)
                      -+.|+|..|.+++++|++ ....||+
T Consensus        13 ~~~C~H~~c~~C~~~~~~~~~~~CP~   38 (39)
T smart00184       13 VLPCGHTFCRSCIRKWLKSGNNTCPI   38 (39)
T ss_pred             EecCCChHHHHHHHHHHHhCcCCCCC
Confidence            356999999999999998 5667885

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PHA02929 N1R/p28-like protein; Provisional

Probab=95.37  E-value=0.017  Score=40.37  Aligned_cols=27  Identities=22%  Similarity=0.533  Sum_probs=24.2

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..=..|+|..|..|+.+|.....+||+
T Consensus       195 ~vl~~C~H~FC~~CI~~Wl~~~~tCPl  221 (238)
T PHA02929        195 GILSNCNHVFCIECIDIWKKEKNTCPV  221 (238)
T ss_pred             eecCCCCCcccHHHHHHHHhcCCCCCC
Confidence            345689999999999999999999998

>KOG2930|consensus

Probab=94.75  E-value=0.017  Score=36.29  Aligned_cols=24  Identities=33%  Similarity=0.822  Sum_probs=22.5

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..|.|..|.++|..|+.+..+||.
T Consensus        79 G~CNHaFH~hCisrWlktr~vCPL  102 (114)
T KOG2930|consen   79 GVCNHAFHFHCISRWLKTRNVCPL  102 (114)
T ss_pred             eecchHHHHHHHHHHHhhcCcCCC
Confidence            469999999999999999999996

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.026  Score=42.39  Aligned_cols=24  Identities=29%  Similarity=0.782  Sum_probs=22.8

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.|||..|.+|++.|.++..+||.
T Consensus       316 LpCGHilHl~CLknW~ERqQTCPI  339 (491)
T COG5243         316 LPCGHILHLHCLKNWLERQQTCPI  339 (491)
T ss_pred             ccccceeeHHHHHHHHHhccCCCc
Confidence            579999999999999999999997

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=93.90  E-value=0.047  Score=32.88  Aligned_cols=23  Identities=30%  Similarity=0.816  Sum_probs=20.1

Q ss_pred             CCCCCChHHHHHHHHhC---CCCCCC
Q psy17526         39 GCSHGGHLSHMQEWFMK---NNVCPT   61 (70)
Q Consensus        39 ~C~HggH~~h~~~Wf~~---~~~CP~   61 (70)
                      .|+|..|.+++.+|+++   ...||.
T Consensus        51 ~C~H~FH~hCI~kWl~~~~~~~~CPm   76 (85)
T PF12861_consen   51 KCSHNFHMHCILKWLSTQSSKGQCPM   76 (85)
T ss_pred             cCccHHHHHHHHHHHccccCCCCCCC
Confidence            49999999999999997   367885

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=93.76  E-value=0.042  Score=25.83  Aligned_cols=21  Identities=14%  Similarity=0.199  Sum_probs=15.3

Q ss_pred             CcccCccCCCCCCcCcccccc
Q psy17526          1 MNAHSDRCQHGLGNFGKLEGK   21 (70)
Q Consensus         1 ~~~~C~~C~~~l~~~~~~C~~   21 (70)
                      |-+.||+||+.++....+|..
T Consensus         1 m~~~Cp~Cg~~~~~~~~fC~~   21 (26)
T PF13248_consen    1 MEMFCPNCGAEIDPDAKFCPN   21 (26)
T ss_pred             CcCCCcccCCcCCcccccChh
Confidence            567899999988666555543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=93.21  E-value=0.03  Score=28.39  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=22.8

Q ss_pred             CcccCccCCCCCCcCccccccchHHHHhhhhcccccccCCCCCC
Q psy17526          1 MNAHSDRCQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHGG   44 (70)
Q Consensus         1 ~~~~C~~C~~~l~~~~~~C~~~~~iC~~~v~~l~~~C~~C~Hgg   44 (70)
                      |.+.||+|+....-..         -..+..+..+-|.+|+|..
T Consensus         1 M~i~CP~C~~~f~v~~---------~~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPD---------DKLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             CEEECCCCCceEEcCH---------HHcccCCcEEECCCCCcEe
Confidence            7899999998773221         0023456677788888753

>KOG0802|consensus

Probab=92.88  E-value=0.061  Score=40.93  Aligned_cols=25  Identities=36%  Similarity=0.735  Sum_probs=23.3

Q ss_pred             ccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         37 CQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        37 C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      =+.|+|..|.+++++||++...||+
T Consensus       311 rL~C~Hifh~~CL~~W~er~qtCP~  335 (543)
T KOG0802|consen  311 RLPCGHIFHDSCLRSWFERQQTCPT  335 (543)
T ss_pred             eeecccchHHHHHHHHHHHhCcCCc
Confidence            3679999999999999999999997

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=92.83  E-value=0.016  Score=33.14  Aligned_cols=23  Identities=30%  Similarity=0.674  Sum_probs=12.9

Q ss_pred             cccccc--CCCCCChHHHHHHHHhC
Q psy17526         33 LYSWCQ--GCSHGGHLSHMQEWFMK   55 (70)
Q Consensus        33 l~~~C~--~C~HggH~~h~~~Wf~~   55 (70)
                      ..++|.  +|+...|..+|.+||++
T Consensus        19 p~~~C~n~~C~~~fH~~CL~~wf~~   43 (70)
T PF11793_consen   19 PDVVCPNPSCGKKFHLLCLSEWFLS   43 (70)
T ss_dssp             --B--S-TT----B-SGGGHHHHHH
T ss_pred             CceEcCCcccCCHHHHHHHHHHHHH
Confidence            457787  99999999999999996

>KOG4628|consensus

Probab=92.58  E-value=0.07  Score=39.26  Aligned_cols=41  Identities=22%  Similarity=0.516  Sum_probs=29.6

Q ss_pred             HHHH-hhhhcccccccCCCCCChHHHHHHHHhCCC-CCCCCCCc
Q psy17526         24 MLVF-CLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPTGCGH   65 (70)
Q Consensus        24 ~iC~-~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~gC~c   65 (70)
                      +||- +-..|--+-=+.|.|-.|.+|+.-|+.+.+ .||+ |..
T Consensus       233 aIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv-CK~  275 (348)
T KOG4628|consen  233 AICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV-CKR  275 (348)
T ss_pred             EEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC-CCC
Confidence            5662 333344444489999999999999999985 5998 543

>PF12773 DZR: Double zinc ribbon

Probab=92.20  E-value=0.057  Score=28.39  Aligned_cols=17  Identities=12%  Similarity=0.069  Sum_probs=10.0

Q ss_pred             CccCCCCCCcCcccccc
Q psy17526          5 SDRCQHGLGNFGKLEGK   21 (70)
Q Consensus         5 C~~C~~~l~~~~~~C~~   21 (70)
                      ||+||++++....+|..
T Consensus         1 Cp~Cg~~~~~~~~fC~~   17 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPH   17 (50)
T ss_pred             CCCcCCcCCccccCChh
Confidence            56677776555445543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.71  E-value=0.13  Score=25.64  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=22.1

Q ss_pred             cccCCCCCChHHHHHHHHh--CCCCCCC
Q psy17526         36 WCQGCSHGGHLSHMQEWFM--KNNVCPT   61 (70)
Q Consensus        36 ~C~~C~HggH~~h~~~Wf~--~~~~CP~   61 (70)
                      .-..|+|....+++++|++  ....||.
T Consensus        13 ~~~~C~H~fC~~C~~~~~~~~~~~~CP~   40 (41)
T PF00097_consen   13 ILLPCGHSFCRDCLRKWLENSGSVKCPL   40 (41)
T ss_dssp             EETTTSEEEEHHHHHHHHHHTSSSBTTT
T ss_pred             EEecCCCcchHHHHHHHHHhcCCccCCc
Confidence            4578999999999999999  4567885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=91.49  E-value=0.062  Score=27.17  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=21.6

Q ss_pred             CcccCccCCCCCCcCccccccchHHHHhhhhcccccccCCCCC
Q psy17526          1 MNAHSDRCQHGLGNFGKLEGKIQMLVFCLVSGLYSWCQGCSHG   43 (70)
Q Consensus         1 ~~~~C~~C~~~l~~~~~~C~~~~~iC~~~v~~l~~~C~~C~Hg   43 (70)
                      |.+.||+|++...-..         -..+-.+..+-|.+|+|.
T Consensus         1 M~i~Cp~C~~~y~i~d---------~~ip~~g~~v~C~~C~~~   34 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDD---------EKIPPKGRKVRCSKCGHV   34 (36)
T ss_pred             CEEECCCCCCEEeCCH---------HHCCCCCcEEECCCCCCE
Confidence            7889999988762221         002335567778888875

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=90.53  E-value=0.099  Score=28.94  Aligned_cols=27  Identities=22%  Similarity=0.696  Sum_probs=18.6

Q ss_pred             cCCCCCChHHHHHHHHhC--CCCCCC-CCC
Q psy17526         38 QGCSHGGHLSHMQEWFMK--NNVCPT-GCG   64 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~--~~~CP~-gC~   64 (70)
                      ..|+|..=.+.+.+|+++  ...||+ ||.
T Consensus        28 ~~C~H~fek~aI~~~i~~~~~~~CPv~GC~   57 (57)
T PF11789_consen   28 KKCGHTFEKEAILQYIQRNGSKRCPVAGCN   57 (57)
T ss_dssp             SSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred             CCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence            389999999999999944  578998 884

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=89.41  E-value=0.22  Score=22.87  Aligned_cols=17  Identities=12%  Similarity=0.143  Sum_probs=12.2

Q ss_pred             cCccCCCCCCcCccccc
Q psy17526          4 HSDRCQHGLGNFGKLEG   20 (70)
Q Consensus         4 ~C~~C~~~l~~~~~~C~   20 (70)
                      .||+||+.++.....|.
T Consensus         1 ~Cp~CG~~~~~~~~fC~   17 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCP   17 (23)
T ss_pred             CCcccCCCCCCcCcchh
Confidence            48899999876654554

>KOG0827|consensus

Probab=87.85  E-value=0.32  Score=36.77  Aligned_cols=24  Identities=33%  Similarity=0.735  Sum_probs=20.0

Q ss_pred             cCCCCCChHHHHHHHHhC---CCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMK---NNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~---~~~CP~   61 (70)
                      ..|||..|..++.+||+.   ++.||.
T Consensus        24 ~~cGhifh~~cl~qwfe~~Ps~R~cpi   50 (465)
T KOG0827|consen   24 GTCGHIFHTTCLTQWFEGDPSNRGCPI   50 (465)
T ss_pred             cchhhHHHHHHHHHHHccCCccCCCCc
Confidence            459999999999999987   256774

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.54  E-value=0.3  Score=35.94  Aligned_cols=38  Identities=18%  Similarity=0.464  Sum_probs=30.2

Q ss_pred             HHH-HhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLV-FCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC-~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      +|| .+.+++-.+.-+-|.|..|..|+..|... ...||+
T Consensus       327 aICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv  366 (374)
T COG5540         327 AICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV  366 (374)
T ss_pred             EEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc
Confidence            455 24456666778899999999999999995 578998

>smart00504 Ubox Modified RING finger domain

Probab=87.05  E-value=0.38  Score=25.79  Aligned_cols=24  Identities=8%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..+||..-.+++.+|++++..||.
T Consensus        17 ~~~G~v~~~~~i~~~~~~~~~cP~   40 (63)
T smart00504       17 LPSGQTYERRAIEKWLLSHGTDPV   40 (63)
T ss_pred             CCCCCEEeHHHHHHHHHHCCCCCC
Confidence            468899999999999999889997

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=86.75  E-value=0.41  Score=25.06  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=23.2

Q ss_pred             cccCCCCC-ChHHHHHHHHhCCCCCCC
Q psy17526         36 WCQGCSHG-GHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        36 ~C~~C~Hg-gH~~h~~~Wf~~~~~CP~   61 (70)
                      .-..|+|. .-..++.+|+++...||+
T Consensus        16 ~~~pCgH~~~C~~C~~~~~~~~~~CP~   42 (50)
T PF13920_consen   16 VLLPCGHLCFCEECAERLLKRKKKCPI   42 (50)
T ss_dssp             EEETTCEEEEEHHHHHHHHHTTSBBTT
T ss_pred             EEeCCCChHHHHHHhHHhcccCCCCCc
Confidence            34579999 999999999999999997

...

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=86.08  E-value=0.73  Score=23.60  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=23.6

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .+=..|+|....+++.........||+
T Consensus        15 ~~l~~CgH~~C~~C~~~~~~~~~~CP~   41 (44)
T PF14634_consen   15 PRLTSCGHIFCEKCLKKLKGKSVKCPI   41 (44)
T ss_pred             eEEcccCCHHHHHHHHhhcCCCCCCcC
Confidence            566789999999999999877788997

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=85.87  E-value=0.6  Score=31.89  Aligned_cols=29  Identities=14%  Similarity=0.167  Sum_probs=22.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHh
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM   54 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~   54 (70)
                      .||.+.++...+  ..|+|.....|+.+|+.
T Consensus        22 pICld~~~dPVv--T~CGH~FC~~CI~~wl~   50 (193)
T PLN03208         22 NICLDQVRDPVV--TLCGHLFCWPCIHKWTY   50 (193)
T ss_pred             ccCCCcCCCcEE--cCCCchhHHHHHHHHHH
Confidence            566666555444  57999999999999975

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=84.65  E-value=0.68  Score=38.78  Aligned_cols=27  Identities=26%  Similarity=0.717  Sum_probs=24.5

Q ss_pred             ccccCCCCCChHHHHHHHHhC--CCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMK--NNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~--~~~CP~   61 (70)
                      --|..|.|-.|+.|+..||+.  +..||.
T Consensus      1489 krC~TCknKFH~~CLyKWf~Ss~~s~CPl 1517 (1525)
T COG5219        1489 KRCATCKNKFHTRCLYKWFASSARSNCPL 1517 (1525)
T ss_pred             cccchhhhhhhHHHHHHHHHhcCCCCCCc
Confidence            459999999999999999998  478997

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=84.53  E-value=0.88  Score=24.22  Aligned_cols=21  Identities=14%  Similarity=0.409  Sum_probs=17.2

Q ss_pred             CCCChHHHHHHHHhCC--CCCCC
Q psy17526         41 SHGGHLSHMQEWFMKN--NVCPT   61 (70)
Q Consensus        41 ~HggH~~h~~~Wf~~~--~~CP~   61 (70)
                      .|--|.++|+.|++..  ..||+
T Consensus        25 ~~~vH~~Cl~~W~~~~~~~~C~i   47 (49)
T smart00744       25 LKYVHQECLERWINESGNKTCEI   47 (49)
T ss_pred             hhHHHHHHHHHHHHHcCCCcCCC
Confidence            3778999999999764  47887

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>TIGR00599 rad18 DNA repair protein rad18

Probab=83.85  E-value=1.1  Score=33.55  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+..-++  ..|+|-....|+++|+.....||+
T Consensus        30 ~IC~d~~~~Pvi--tpCgH~FCs~CI~~~l~~~~~CP~   65 (397)
T TIGR00599        30 HICKDFFDVPVL--TSCSHTFCSLCIRRCLSNQPKCPL   65 (397)
T ss_pred             CcCchhhhCccC--CCCCCchhHHHHHHHHhCCCCCCC
Confidence            455555544332  689999999999999999888997

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=80.93  E-value=0.84  Score=25.64  Aligned_cols=19  Identities=11%  Similarity=0.114  Sum_probs=15.6

Q ss_pred             ccCccCCCCCCcCcccccc
Q psy17526          3 AHSDRCQHGLGNFGKLEGK   21 (70)
Q Consensus         3 ~~C~~C~~~l~~~~~~C~~   21 (70)
                      -+|+.||+++|..-..|+.
T Consensus         4 kHC~~CG~~Ip~~~~fCS~   22 (59)
T PF09889_consen    4 KHCPVCGKPIPPDESFCSP   22 (59)
T ss_pred             CcCCcCCCcCCcchhhhCH
Confidence            3799999999877667864

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PHA02926 zinc finger-like protein; Provisional

Probab=80.60  E-value=1.5  Score=30.85  Aligned_cols=29  Identities=17%  Similarity=0.539  Sum_probs=23.4

Q ss_pred             ccccccCCCCCChHHHHHHHHhCC------CCCCC
Q psy17526         33 LYSWCQGCSHGGHLSHMQEWFMKN------NVCPT   61 (70)
Q Consensus        33 l~~~C~~C~HggH~~h~~~Wf~~~------~~CP~   61 (70)
                      .+-.=.+|+|.....|+++|.+..      ..||.
T Consensus       190 rFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi  224 (242)
T PHA02926        190 YFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI  224 (242)
T ss_pred             cccccCCCCchHHHHHHHHHHHhccccCcCCcCCC
Confidence            455667999999999999999863      34986

>KOG0317|consensus

Probab=80.42  E-value=1.5  Score=31.79  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=24.0

Q ss_pred             cccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         36 WCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        36 ~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .|.-|||..--+|+.+|.....+||.
T Consensus       253 SaTpCGHiFCWsCI~~w~~ek~eCPl  278 (293)
T KOG0317|consen  253 SATPCGHIFCWSCILEWCSEKAECPL  278 (293)
T ss_pred             CcCcCcchHHHHHHHHHHccccCCCc
Confidence            47789999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.5
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.34
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	96.99
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	96.9
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	96.78
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	96.76
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.71
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	96.71
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.67
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	96.63
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	96.58
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	96.55
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	96.52
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	96.44
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.41
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	96.37
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	96.34
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	96.25
2ect_A	78	Ring finger protein 126; metal binding protein, st	96.22
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	96.18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.06
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	96.04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	96.01
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	95.84
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	95.82
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	95.53
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	95.51
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	95.44
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	95.35
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	95.29
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	95.22
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	95.2
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	95.07
3nw0_A	238	Non-structural maintenance of chromosomes element	95.01
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	94.91
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	94.65
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	94.48
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	94.43
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	94.39
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	94.14
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	93.99
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	93.89
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	93.44
1z6u_A	150	NP95-like ring finger protein isoform B; structura	93.37
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	93.17
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	93.1
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	92.77
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	90.43
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	89.49
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	87.91
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	87.24
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	86.51
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	85.94
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	84.59
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	84.17
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	82.88

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=8.5e-05  Score=42.17  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             HHHHhhhh--cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVS--GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~--~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+...  ...+.-+.|+|..|.+++.+|+..+.+||+
T Consensus        30 ~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~   69 (81)
T 2ecl_A           30 LRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL   69 (81)
T ss_dssp             TTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred             cccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence            45544432  223344579999999999999999999997

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.34  E-value=3.5e-05  Score=44.10  Aligned_cols=37  Identities=24%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC--CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN--NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~--~~CP~   61 (70)
                      +||.+++. .-..|..|+|..|.+++..||+..  .+||.
T Consensus        19 ~IC~~~i~-~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~   57 (74)
T 2ct0_A           19 NICHSLLI-QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH   57 (74)
T ss_dssp             SSSCCBCS-SSEECSSSCCEECHHHHHHHSTTCSSCCCTT
T ss_pred             cchhhHcc-cCCccCCCCchhhHHHHHHHHHhcCCCCCCC
Confidence            45544443 235788999999999999999987  89997

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=96.99  E-value=0.00066  Score=40.30  Aligned_cols=59  Identities=15%  Similarity=0.190  Sum_probs=39.3

Q ss_pred             ccCccCCCCCCcCcccccc-----ch-HHHHhhhh-----cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526          3 AHSDRCQHGLGNFGKLEGK-----IQ-MLVFCLVS-----GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus         3 ~~C~~C~~~l~~~~~~C~~-----~~-~iC~~~v~-----~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..||.|++++......=..     .. +||.+.++     +.......|+|..|.+++.+|+.....||+
T Consensus        49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~  118 (133)
T 4ap4_A           49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT  118 (133)
T ss_dssp             SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT
T ss_pred             CCCCCCCCcCccccccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC
Confidence            4799999988432110000     00 55633322     223456789999999999999999999997

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=96.90  E-value=0.00012  Score=37.97  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=24.1

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.-+.|+|..|.+++.+|++....||+
T Consensus        22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~   48 (55)
T 2ecm_A           22 AHVLPCGHLLHRTCYEEMLKEGYRCPL   48 (55)
T ss_dssp             EEECTTSCEEETTHHHHHHHHTCCCTT
T ss_pred             eEecCCCCcccHHHHHHHHHcCCcCCC
Confidence            445679999999999999999999997

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=96.78  E-value=0.0003  Score=36.44  Aligned_cols=24  Identities=29%  Similarity=0.764  Sum_probs=22.4

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.|+|..|.+++++|+++...||+
T Consensus        25 ~~C~H~f~~~Ci~~w~~~~~~CP~   48 (55)
T 1iym_A           25 PRCGHGFHAECVDMWLGSHSTCPL   48 (55)
T ss_dssp             SSSCCEECTTHHHHTTTTCCSCSS
T ss_pred             CCCCCcccHHHHHHHHHcCCcCcC
Confidence            369999999999999999999997

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=96.76  E-value=0.00056  Score=36.96  Aligned_cols=38  Identities=21%  Similarity=0.484  Sum_probs=28.5

Q ss_pred             HHHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+. +-.+.-+.|+|..|..++.+|+.....||+
T Consensus        18 ~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~   56 (69)
T 2kiz_A           18 TICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPI   56 (69)
T ss_dssp             TTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             eeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcC
Confidence            45544442 223344579999999999999999999997

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.71  E-value=0.00066  Score=40.79  Aligned_cols=27  Identities=26%  Similarity=0.624  Sum_probs=24.1

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.-+.|+|..|.+++.+|+..+..||+
T Consensus        68 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~   94 (106)
T 3dpl_R           68 VAWGVCNHAFHFHCISRWLKTRQVCPL   94 (106)
T ss_dssp             EEEETTSCEEEHHHHHHHHTTCSBCSS
T ss_pred             EeecccCcEECHHHHHHHHHcCCcCcC
Confidence            344689999999999999999999997

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.71  E-value=0.00071  Score=36.17  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=24.3

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.-+.|+|..|.+++.+|+.....||+
T Consensus        35 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~   61 (69)
T 2ea6_A           35 IVSTECGHVFCSQCLRDSLKNANTCPT   61 (69)
T ss_dssp             EEECSSSCEEEHHHHHHHHHHCSSCTT
T ss_pred             eEeCCCCChhcHHHHHHHHHcCCCCCC
Confidence            355789999999999999999999997

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=96.67  E-value=0.00028  Score=43.39  Aligned_cols=24  Identities=29%  Similarity=0.779  Sum_probs=0.0

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.|+|..|.+++.+|+..+..||.
T Consensus        82 ~~C~H~FH~~CI~~Wl~~~~~CP~  105 (117)
T 4a0k_B           82 GVCNHAFHFHCISRWLKTRQVCPL  105 (117)
T ss_dssp             ------------------------
T ss_pred             CCcCceEcHHHHHHHHHcCCcCCC
Confidence            479999999999999999999997

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=96.63  E-value=0.00079  Score=36.33  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=25.0

Q ss_pred             cccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         34 YSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        34 ~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ...-..|+|..|.+++.+|+.....||+
T Consensus        29 ~~~~~~CgH~fc~~Ci~~~~~~~~~CP~   56 (71)
T 3ng2_A           29 LIVSTECGHVFCSQCLRDSLKNANTCPT   56 (71)
T ss_dssp             CEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             CeEeCCCCChHhHHHHHHHHHcCCCCCC
Confidence            3456789999999999999999999997

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=96.58  E-value=0.00084  Score=35.37  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=24.3

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..-..|+|..|.+++.+|++++..||.
T Consensus        23 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~   49 (64)
T 2xeu_A           23 IVSTECGHVFCSQCLRDSLKNANTCPT   49 (64)
T ss_dssp             EEEETTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             EEeCCCCCchhHHHHHHHHHcCCCCCC
Confidence            355689999999999999999999997

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.55  E-value=0.00066  Score=37.15  Aligned_cols=24  Identities=29%  Similarity=0.672  Sum_probs=22.3

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +.|+|..|.+++.+|+.....||+
T Consensus        34 ~~C~H~f~~~Ci~~~~~~~~~CP~   57 (74)
T 2ep4_A           34 CPCKHAFHRKCLIKWLEVRKVCPL   57 (74)
T ss_dssp             ETTTEEEEHHHHHHHHHHCSBCTT
T ss_pred             cCCCCEecHHHHHHHHHcCCcCCC
Confidence            369999999999999999999997

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.52  E-value=0.0011  Score=35.67  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=27.7

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHh-CCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM-KNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~-~~~~CP~   61 (70)
                      .||.+.++.-..  ..|+|..+.+++.+|+. ....||+
T Consensus        19 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~   55 (66)
T 2ecy_A           19 EKCHLVLCSPKQ--TECGHRFCESCMAALLSSSSPKCTA   55 (66)
T ss_dssp             TTTCCEESSCCC--CSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred             CCCChHhcCeeE--CCCCCHHHHHHHHHHHHhCcCCCCC
Confidence            566555554444  58999999999999995 5678997

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=96.44  E-value=0.0011  Score=38.13  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             HHHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +||.+.+. +-.+.-+.|+|..|..++.+|+..+..||+
T Consensus        44 ~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~   82 (91)
T 2l0b_A           44 PICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPV   82 (91)
T ss_dssp             TTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTT
T ss_pred             cccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcC
Confidence            56644332 222333569999999999999999999997

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.41  E-value=0.00063  Score=41.79  Aligned_cols=36  Identities=17%  Similarity=0.378  Sum_probs=27.5

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+....+  +.|||..|..|+.+|+.....||+
T Consensus        57 ~iC~~~~~~~~~--~~CgH~fc~~Ci~~~~~~~~~CP~   92 (138)
T 4ayc_A           57 IICSEYFIEAVT--LNCAHSFCSYCINEWMKRKIECPI   92 (138)
T ss_dssp             TTTCSBCSSEEE--ETTSCEEEHHHHHHHTTTCSBCTT
T ss_pred             cccCcccCCceE--CCCCCCccHHHHHHHHHcCCcCCC
Confidence            445444443322  479999999999999999999997

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=96.37  E-value=0.0018  Score=38.04  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=22.0

Q ss_pred             ccCCCCCChHHHHHHHHh-----CCCCCCC
Q psy17526         37 CQGCSHGGHLSHMQEWFM-----KNNVCPT   61 (70)
Q Consensus        37 C~~C~HggH~~h~~~Wf~-----~~~~CP~   61 (70)
                      -+.|+|..|.+++.+|+.     ....||+
T Consensus        58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~   87 (114)
T 1v87_A           58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPS   87 (114)
T ss_dssp             ESSSCCEECHHHHHHHHHHTCCSSCCBCTT
T ss_pred             cCCCCCcccHHHHHHHHHcccCCCCCcCCC
Confidence            578999999999999994     5678997

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.34  E-value=0.0007  Score=37.28  Aligned_cols=38  Identities=21%  Similarity=0.527  Sum_probs=29.2

Q ss_pred             HHHHhhhh-cccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVS-GLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~-~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+. +-.+..+.|+|..|.+++.+|+..+..||+
T Consensus        27 ~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~   65 (75)
T 1x4j_A           27 VVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPI   65 (75)
T ss_dssp             TTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTT
T ss_pred             eECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcC
Confidence            56654442 223445669999999999999999999997

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.25  E-value=0.0013  Score=34.95  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=27.4

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHh---CCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM---KNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~---~~~~CP~   61 (70)
                      .||.+.++...+  +.|+|..+..++.+|+.   ....||+
T Consensus        24 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~   62 (63)
T 2ysj_A           24 PICLDILQKPVT--IDCGHNFCLKCITQIGETSCGFFKCPL   62 (63)
T ss_dssp             TTTCSBCSSCEE--CTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred             CcCCchhCCeEE--eCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence            566665555444  38999999999999998   4568986

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.22  E-value=0.00092  Score=36.89  Aligned_cols=38  Identities=18%  Similarity=0.188  Sum_probs=27.5

Q ss_pred             HHHHhhhhc-ccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSG-LYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~-l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+.. ..+.-+.|+|..|..++.+|+.....||+
T Consensus        19 ~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~   57 (78)
T 2ect_A           19 PVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV   57 (78)
T ss_dssp             TTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTT
T ss_pred             eeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcC
Confidence            455444321 12223469999999999999999999997

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.18  E-value=0.0017  Score=33.69  Aligned_cols=36  Identities=14%  Similarity=0.371  Sum_probs=25.5

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHh---CCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM---KNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~---~~~~CP~   61 (70)
                      .||.+.++.-.+  +.|+|..|..++.+|+.   ....||+
T Consensus        19 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~   57 (58)
T 2ecj_A           19 SVCLEYLKEPVI--IECGHNFCKACITRWWEDLERDFPCPV   57 (58)
T ss_dssp             SSSCCBCSSCCC--CSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred             ccCCcccCccEe--CCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence            455444444332  57999999999999965   4578886

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.06  E-value=0.0014  Score=35.22  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=23.4

Q ss_pred             cccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         36 WCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        36 ~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .-..|+|..|.+++.+|+.....||.
T Consensus        20 ~~~~C~H~fc~~Ci~~~~~~~~~CP~   45 (68)
T 1chc_A           20 MALPCLHAFCYVCITRWIRQNPTCPL   45 (68)
T ss_dssp             EETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred             EecCCCCeeHHHHHHHHHhCcCcCcC
Confidence            34579999999999999999999997

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.04  E-value=0.0011  Score=36.89  Aligned_cols=36  Identities=17%  Similarity=0.081  Sum_probs=27.9

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.++..++  ..|+|..+..++.+|+.....||+
T Consensus        19 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~CP~   54 (81)
T 2csy_A           19 FICRQAFQNPVV--TKCRHYFCESCALEHFRATPRCYI   54 (81)
T ss_dssp             SSSCSBCCSEEE--CTTSCEEEHHHHHHHHHHCSBCSS
T ss_pred             cCCCchhcCeeE--ccCCCHhHHHHHHHHHHCCCcCCC
Confidence            455444444333  689999999999999999999997

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.01  E-value=0.00052  Score=37.51  Aligned_cols=36  Identities=11%  Similarity=0.007  Sum_probs=27.4

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.++...+  +.|+|..|..++.+|+.....||+
T Consensus        19 ~IC~~~~~~~~~--~~CgH~fC~~Ci~~~~~~~~~CP~   54 (71)
T 2d8t_A           19 AICLQTCVHPVS--LPCKHVFCYLCVKGASWLGKRCAL   54 (71)
T ss_dssp             SSSSSBCSSEEE--ETTTEEEEHHHHHHCTTCSSBCSS
T ss_pred             ccCCcccCCCEE--ccCCCHHHHHHHHHHHHCCCcCcC
Confidence            455444443322  369999999999999999999997

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=95.84  E-value=0.0023  Score=36.85  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+..-. .-..|||..|..++.+|+.....||+
T Consensus        26 ~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~CP~   62 (99)
T 2y43_A           26 GICFEYFNIAM-IIPQCSHNYCSLCIRKFLSYKTQCPT   62 (99)
T ss_dssp             TTTCSBCSSEE-ECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred             ccCChhhCCcC-EECCCCCHhhHHHHHHHHHCCCCCCC
Confidence            45655544322 22589999999999999999999997

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.82  E-value=0.0045  Score=33.73  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.++.- +.-..|+|..+.+++.+|++....||+
T Consensus        19 ~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~   55 (72)
T 2djb_A           19 SICKGYLIDA-TTITECLHTFCKSCIVRHFYYSNRCPK   55 (72)
T ss_dssp             TTTSSCCSSC-EECSSSCCEECHHHHHHHHHHCSSCTT
T ss_pred             CCCChHHHCc-CEECCCCCHHHHHHHHHHHHcCCcCCC
Confidence            5665555432 222489999999999999999999997

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=95.53  E-value=0.0063  Score=35.91  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=24.5

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..-+.|||..|.+++.+|+.+...||+
T Consensus        27 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~   53 (133)
T 4ap4_A           27 IVSTECGHVFCSQCLRDSLKNANTCPT   53 (133)
T ss_dssp             EEEETTCCEEEHHHHHHHHTTCSBCTT
T ss_pred             eEecCCCChhhHHHHHHHHHhCCCCCC
Confidence            356789999999999999999999997

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=95.51  E-value=0.0059  Score=35.47  Aligned_cols=37  Identities=19%  Similarity=0.521  Sum_probs=28.9

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~   61 (70)
                      .||.+.+.. .+.+..|||..+..++.+|+... ..||+
T Consensus        26 ~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~   63 (100)
T 3lrq_A           26 FICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPH   63 (100)
T ss_dssp             TTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTT
T ss_pred             ccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCC
Confidence            455555543 34558999999999999999998 69997

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=95.44  E-value=0.009  Score=34.88  Aligned_cols=37  Identities=14%  Similarity=0.199  Sum_probs=27.8

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+..- +.-..|||..+..++.+|+.....||.
T Consensus        19 ~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~   55 (108)
T 2ckl_A           19 VLCGGYFIDA-TTIIECLHSFCKTCIVRYLETSKYCPI   55 (108)
T ss_dssp             TTTSSBCSSE-EEETTTCCEEEHHHHHHHHTSCSBCTT
T ss_pred             ccCChHHhCc-CEeCCCCChhhHHHHHHHHHhCCcCcC
Confidence            4554444332 222489999999999999999999997

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=95.35  E-value=0.0023  Score=35.21  Aligned_cols=36  Identities=11%  Similarity=0.292  Sum_probs=26.8

Q ss_pred             HHHHhhhhcccccccC-CCCCChHHHHHHHHhCC--CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQG-CSHGGHLSHMQEWFMKN--NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~-C~HggH~~h~~~Wf~~~--~~CP~   61 (70)
                      .||.+.+..-++  +. |+|..+..++.+|+...  ..||+
T Consensus        19 ~IC~~~~~~p~~--~~~CgH~fC~~Ci~~~~~~~~~~~CP~   57 (74)
T 2yur_A           19 LICKDIMTDAVV--IPCCGNSYCDECIRTALLESDEHTCPT   57 (74)
T ss_dssp             SSSCCCCTTCEE--CSSSCCEECTTHHHHHHHHSSSSCCSS
T ss_pred             cCCChHHhCCeE--cCCCCCHHHHHHHHHHHHhcCCCcCCC
Confidence            455555544333  45 99999999999999875  68997

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.29  E-value=0.0035  Score=33.92  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=27.1

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHh---CCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM---KNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~---~~~~CP~   61 (70)
                      .||.+.+....+  +.|+|..+..++.+|+.   ....||+
T Consensus        24 ~IC~~~~~~~~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~   62 (73)
T 2ysl_A           24 PICLDILQKPVT--IDCGHNFCLKCITQIGETSCGFFKCPL   62 (73)
T ss_dssp             TTTCSBCSSEEE--CTTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred             ccCCcccCCeEE--cCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence            566555554333  38999999999999997   3568997

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=95.22  E-value=0.0059  Score=38.17  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.+.+.. .+....|||..|..|+..|+.. ...||+
T Consensus        58 ~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~   95 (165)
T 2ckl_B           58 PICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPT   95 (165)
T ss_dssp             TTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred             cccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence            566555544 2333589999999999999998 788998

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=95.20  E-value=0.0038  Score=34.30  Aligned_cols=36  Identities=17%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.++++.-++  ..|||..+..++.+|+.. ...||+
T Consensus        12 ~IC~~~~~~Pv~--~~CgH~fc~~Ci~~~~~~~~~~CP~   48 (78)
T 1t1h_A           12 PISLELMKDPVI--VSTGQTYERSSIQKWLDAGHKTCPK   48 (78)
T ss_dssp             TTTSCCCSSEEE--ETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred             CCccccccCCEE--cCCCCeecHHHHHHHHHHCcCCCCC
Confidence            455555544333  379999999999999998 789997

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.07  E-value=0.0029  Score=34.10  Aligned_cols=35  Identities=14%  Similarity=0.319  Sum_probs=27.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.+.+..   .-+.|+|..|.+++.+|+.....||+
T Consensus        19 ~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~   53 (70)
T 2ecn_A           19 CICMDGRAD---LILPCAHSFCQKCIDKWSDRHRNCPI   53 (70)
T ss_dssp             SSSCCSCCS---EEETTTEEECHHHHHHSSCCCSSCHH
T ss_pred             eeCCcCccC---cccCCCCcccHHHHHHHHHCcCcCCC
Confidence            455444444   34679999999999999999999995

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=95.01  E-value=0.0067  Score=40.93  Aligned_cols=39  Identities=26%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC--CCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN--VCPTGCG   64 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~--~CP~gC~   64 (70)
                      .+|.++|. .-..|.+|++..|..|+..||....  .||. |+
T Consensus       184 ~iC~~iv~-~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~-C~  224 (238)
T 3nw0_A          184 NICHSLLI-QGQSCETCGIRMHLPCVAKYFQSNAEPRCPH-CN  224 (238)
T ss_dssp             TTTCSBCS-SCEECSSSCCEECHHHHHHHTTTCSSCBCTT-TC
T ss_pred             cchhhHHh-CCcccCccChHHHHHHHHHHHHhCCCCCCCC-CC
Confidence            45555554 2477999999999999999998754  8996 54

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.91  E-value=0.0061  Score=33.45  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC------CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK------NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~------~~~CP~   61 (70)
                      .||.+.++...+  +.|+|..+..++.+|+..      ...||.
T Consensus        23 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~   64 (85)
T 2ecv_A           23 PICLELLTQPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPV   64 (85)
T ss_dssp             TTTCSCCSSCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTT
T ss_pred             CCCCcccCCcee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCC
Confidence            566555544333  379999999999999988      788997

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=94.65  E-value=0.007  Score=35.72  Aligned_cols=36  Identities=11%  Similarity=0.196  Sum_probs=28.7

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.+.+..-.+  ..|||..+..++.+|+.. ...||+
T Consensus        27 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~   63 (116)
T 1rmd_A           27 QICEHILADPVE--TSCKHLFCRICILRCLKVMGSYCPS   63 (116)
T ss_dssp             TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred             CCCCcHhcCcEE--cCCCCcccHHHHHHHHhHCcCcCCC
Confidence            566666655444  589999999999999997 678997

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=94.48  E-value=0.0039  Score=34.15  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=27.1

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-------CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-------NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-------~~~CP~   61 (70)
                      .||.+.++.-.+  +.|+|..+.+++.+|+..       ...||+
T Consensus        16 ~IC~~~~~~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~   58 (79)
T 2egp_A           16 PICLELLTEPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPV   58 (79)
T ss_dssp             TTTTEECSSCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS
T ss_pred             cCCCcccCCeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCC
Confidence            456555544333  479999999999999987       568997

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.43  E-value=0.012  Score=34.17  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=26.1

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC---CCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN---VCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~---~CP~   61 (70)
                      .||.+.++.-.+  ..|||..+..++.+|+....   .||+
T Consensus        25 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~   63 (112)
T 1jm7_A           25 PICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPL   63 (112)
T ss_dssp             SSSCCCCSSCCB--CTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred             cccChhhcCeEE--CCCCCHHHHHHHHHHHHhCCCCCCCcC
Confidence            344444433333  47999999999999998754   8997

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.39  E-value=0.017  Score=31.99  Aligned_cols=24  Identities=17%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             cCCCCCChHHHHHHHHhCC---CCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKN---NVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~---~~CP~   61 (70)
                      +.|+|..|..++.+|+...   ..||+
T Consensus        35 ~~CgH~fC~~Ci~~~~~~~~~~~~CP~   61 (88)
T 2ct2_A           35 LHCGHTICRQCLEKLLASSINGVRCPF   61 (88)
T ss_dssp             CSSSCEEEHHHHHHHHHHCSSCBCCTT
T ss_pred             CCCCChhhHHHHHHHHHcCCCCcCCCC
Confidence            4799999999999999986   78997

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.14  E-value=0.031  Score=30.51  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC------CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK------NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~------~~~CP~   61 (70)
                      .||.+.++.-.+  ..|+|..+..++.+|+..      ...||.
T Consensus        23 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~   64 (85)
T 2ecw_A           23 PICLELLKEPVS--ADCNHSFCRACITLNYESNRNTDGKGNCPV   64 (85)
T ss_dssp             TTTCSCCSSCEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred             cCCChhhCccee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence            455554444332  469999999999999998      678997

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.99  E-value=0.043  Score=29.00  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             cCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKN-NVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~-~~CP~   61 (70)
                      ..|||..+.+++.+|+.+. ..||+
T Consensus        24 ~~CgH~fC~~Ci~~~~~~~~~~CP~   48 (65)
T 1g25_A           24 NVCGHTLCESCVDLLFVRGAGNCPE   48 (65)
T ss_dssp             CTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred             CCCCCHhHHHHHHHHHHcCCCcCCC
Confidence            5899999999999998764 67997

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=93.89  E-value=0.016  Score=34.57  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=26.9

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~   61 (70)
                      .||.+.+..-.+  +.|||..+..++..|+... ..||+
T Consensus        56 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~   92 (124)
T 3fl2_A           56 ICCQELVFRPIT--TVCQHNVCKDCLDRSFRAQVFSCPA   92 (124)
T ss_dssp             TTTSSBCSSEEE--CTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred             CcCChHHcCcEE--eeCCCcccHHHHHHHHhHCcCCCCC
Confidence            456555544333  3899999999999999864 48997

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=93.44  E-value=0.069  Score=28.71  Aligned_cols=28  Identities=29%  Similarity=0.739  Sum_probs=22.1

Q ss_pred             ccccccCCCC---CChHHHHHHHHhC--CCCCCC
Q psy17526         33 LYSWCQGCSH---GGHLSHMQEWFMK--NNVCPT   61 (70)
Q Consensus        33 l~~~C~~C~H---ggH~~h~~~Wf~~--~~~CP~   61 (70)
                      +...| +|.+   -.|.++++.|+..  +..||+
T Consensus        20 l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~   52 (60)
T 1vyx_A           20 RFRAC-GCTGELENVHRSCLSTWLTISRNTACQI   52 (60)
T ss_dssp             CCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTT
T ss_pred             eecCc-CCCCchhhhHHHHHHHHHHhCCCCccCC
Confidence            45555 5666   8899999999975  678997

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=93.37  E-value=0.023  Score=35.51  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC-CCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~   61 (70)
                      .||.+.+..-.+  +.|+|..+..|+.+|+.... .||+
T Consensus        82 ~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~  118 (150)
T 1z6u_A           82 VCCQELVYQPVT--TECFHNVCKDCLQRSFKAQVFSCPA  118 (150)
T ss_dssp             TTTSSBCSSEEE--CTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred             ecCChhhcCCEE--cCCCCchhHHHHHHHHHhCCCcCCC
Confidence            456555554444  68999999999999999764 8997

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=93.17  E-value=0.014  Score=34.69  Aligned_cols=36  Identities=11%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC-CCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~   61 (70)
                      .||.+.++.-++  ..|||..+..++.+|+.... .||+
T Consensus        22 ~IC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~   58 (118)
T 3hct_A           22 PICLMALREAVQ--TPCGHRFCKACIIKSIRDAGHKCPV   58 (118)
T ss_dssp             TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred             CcCChhhcCeEE--CCcCChhhHHHHHHHHhhCCCCCCC
Confidence            566555554433  47999999999999998865 8997

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.10  E-value=0.024  Score=32.24  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.7

Q ss_pred             CCCChHHHHHHHHhCC--CCCCC
Q psy17526         41 SHGGHLSHMQEWFMKN--NVCPT   61 (70)
Q Consensus        41 ~HggH~~h~~~Wf~~~--~~CP~   61 (70)
                      .|..|.++|.+|+...  ..||+
T Consensus        41 ~h~fH~~Cl~~Wl~~~~~~~Cpl   63 (80)
T 2d8s_A           41 LHFVHQACLQQWIKSSDTRCCEL   63 (80)
T ss_dssp             SCCEETTHHHHHHHHHCCSBCSS
T ss_pred             CCeeCHHHHHHHHhhCCCCCCCC
Confidence            4999999999999885  48997

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=92.77  E-value=0.03  Score=31.51  Aligned_cols=37  Identities=11%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC--CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN--NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~--~~CP~   61 (70)
                      .||.+.+..-.+ -..|||.....++.+|+...  ..||+
T Consensus        17 ~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~   55 (92)
T 3ztg_A           17 LICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPT   55 (92)
T ss_dssp             TTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTT
T ss_pred             CCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcC
Confidence            566555554332 23399999999999999754  58997

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=90.43  E-value=0.017  Score=33.91  Aligned_cols=36  Identities=17%  Similarity=0.199  Sum_probs=27.1

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.+.+..-.+  +.|||..+..++.+|+.. ...||.
T Consensus        19 ~iC~~~~~~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~   55 (115)
T 3l11_A           19 GICMEILVEPVT--LPCNHTLCKPCFQSTVEKASLCCPF   55 (115)
T ss_dssp             TTTCSBCSSCEE--CTTSCEECHHHHCCCCCTTTSBCTT
T ss_pred             ccCCcccCceeE--cCCCCHHhHHHHHHHHhHCcCCCCC
Confidence            456555544333  379999999999999987 678997

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.49  E-value=0.1  Score=29.93  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             CCCCCChHHHHHHHHhCC------CCCCC-CCC
Q psy17526         39 GCSHGGHLSHMQEWFMKN------NVCPT-GCG   64 (70)
Q Consensus        39 ~C~HggH~~h~~~Wf~~~------~~CP~-gC~   64 (70)
                      .|||..-..++.+|+..+      ..||+ ||.
T Consensus        25 ~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~   57 (94)
T 2yu4_A           25 VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCS   57 (94)
T ss_dssp             SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCC
T ss_pred             CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCc
Confidence            599999999999999874      48998 886

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=87.91  E-value=0.078  Score=32.74  Aligned_cols=36  Identities=8%  Similarity=0.126  Sum_probs=28.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCC-CCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNN-VCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~-~CP~   61 (70)
                      .||.++++.-+.  ..|||.....++.+|+.... .||+
T Consensus        35 ~IC~~~~~~pv~--~~CgH~FC~~Ci~~~~~~~~~~CP~   71 (141)
T 3knv_A           35 SACRNVLRRPFQ--AQCGHRYCSFCLASILSSGPQNCAA   71 (141)
T ss_dssp             TTTCSBCSSEEE--CTTSCEEEHHHHHHHGGGSCEECHH
T ss_pred             CCCChhhcCcEE--CCCCCccCHHHHHHHHhcCCCCCCC
Confidence            677666655543  58999999999999998754 7885

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=87.24  E-value=0.31  Score=35.23  Aligned_cols=36  Identities=17%  Similarity=0.229  Sum_probs=27.3

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHh-CCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFM-KNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~-~~~~CP~   61 (70)
                      +||.+..+..  .-..|||..+..|+.+|.. ....||.
T Consensus       336 ~ICle~~~~p--v~lpCGH~FC~~Ci~~wl~~~~~~CP~  372 (389)
T 2y1n_A          336 KICAENDKDV--KIEPCGHLMCTSCLTSWQESEGQGCPF  372 (389)
T ss_dssp             TTTSSSBCCE--EEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred             CccCcCCCCe--EEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence            4554444332  3368999999999999999 6889997

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=86.51  E-value=0.11  Score=32.26  Aligned_cols=36  Identities=11%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~   61 (70)
                      .||.++++.-+.  ..|||.....++.+|++.. ..||+
T Consensus        22 ~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~   58 (170)
T 3hcs_A           22 PICLMALREAVQ--TPCGHRFCKACIIKSIRDAGHKCPV   58 (170)
T ss_dssp             TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred             CCCChhhcCcEE--CCCCCHHHHHHHHHHHHhCCCCCCC
Confidence            567666655443  4799999999999999874 48997

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=85.94  E-value=0.23  Score=28.88  Aligned_cols=36  Identities=11%  Similarity=0.047  Sum_probs=28.1

Q ss_pred             HHHHhhhhcccccccCCC-CCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCS-HGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~-HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.++|+--++  ..|| |..-..++.+|+..+..||+
T Consensus        26 pI~~~~m~dPV~--~~cG~htf~r~cI~~~l~~~~~cP~   62 (98)
T 1wgm_A           26 PIMSTLMCDPVV--LPSSRVTVDRSTIARHLLSDQTDPF   62 (98)
T ss_dssp             TTTCSBCSSEEE--CTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred             cCccccccCCeE--CCCCCeEECHHHHHHHHHhCCCCCC
Confidence            455555555443  4688 99999999999999999997

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=84.59  E-value=0.13  Score=37.19  Aligned_cols=21  Identities=29%  Similarity=0.683  Sum_probs=18.5

Q ss_pred             cccc--CCCCCChHHHHHHHHhC
Q psy17526         35 SWCQ--GCSHGGHLSHMQEWFMK   55 (70)
Q Consensus        35 ~~C~--~C~HggH~~h~~~Wf~~   55 (70)
                      ..|.  .|+|..|.+|+.+||.+
T Consensus       327 k~C~n~~C~h~FH~~CL~kWLrs  349 (381)
T 3k1l_B          327 VSCDNAKCVLKCHAVCLEEWFKT  349 (381)
T ss_dssp             BCCSCTTCCCCBCSGGGHHHHHH
T ss_pred             ccccCCccCCccchHHHHHHHHh
Confidence            4576  89999999999999986

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=84.17  E-value=0.54  Score=26.35  Aligned_cols=36  Identities=11%  Similarity=-0.011  Sum_probs=27.5

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      .||.++|+--++  ..|||..-..++.+|+..+..||+
T Consensus        18 pI~~~~m~dPV~--~~cGhtf~r~~I~~~l~~~~~cP~   53 (85)
T 2kr4_A           18 PLMDTLMTDPVR--LPSGTVMDRSIILRHLLNSPTDPF   53 (85)
T ss_dssp             TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             cccCchhcCCeE--CCCCCEECHHHHHHHHhcCCCCCC
Confidence            455555544433  358999999999999999999997

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=82.88  E-value=0.27  Score=28.47  Aligned_cols=15  Identities=27%  Similarity=0.470  Sum_probs=12.0

Q ss_pred             CcccCccCCCCCCcC
Q psy17526          1 MNAHSDRCQHGLGNF   15 (70)
Q Consensus         1 ~~~~C~~C~~~l~~~   15 (70)
                      |...||.|+.+|...
T Consensus         1 M~~~CP~C~~~l~~~   15 (81)
T 2jrp_A            1 MEITCPVCHHALERN   15 (81)
T ss_dssp             CCCCCSSSCSCCEEC
T ss_pred             CCCCCCCCCCccccC
Confidence            778899999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.68
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.37
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.35
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.88
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.39
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	96.21
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	96.18
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.14
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	93.3
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	91.13
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	85.76
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	85.33
d2cu8a1	30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	83.59
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	82.63

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8e-06  Score=46.10  Aligned_cols=29  Identities=24%  Similarity=0.542  Sum_probs=26.2

Q ss_pred             ccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         33 LYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        33 l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..+..+.|+|..|.+++..|++.+.+||+
T Consensus        50 ~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~   78 (88)
T d3dplr1          50 CTVAWGVCNHAFHFHCISRWLKTRQVCPL   78 (88)
T ss_dssp             CCEEEETTSCEEEHHHHHHHHTTCSBCSS
T ss_pred             CCeEEccccCcccHHHHHHHHHHCCcCCC
Confidence            34667889999999999999999999997

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.37  E-value=1.9e-05  Score=41.23  Aligned_cols=27  Identities=26%  Similarity=0.703  Sum_probs=24.4

Q ss_pred             ccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ...+.|+|..|.+++.+||+.+..||.
T Consensus        22 ~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~   48 (55)
T d1iyma_          22 RFLPRCGHGFHAECVDMWLGSHSTCPL   48 (55)
T ss_dssp             EECSSSCCEECTTHHHHTTTTCCSCSS
T ss_pred             EEeCCCCCcccHHHHHHHHHhCCcCCC
Confidence            345679999999999999999999997

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.35  E-value=6.5e-06  Score=44.46  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=28.7

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      +||.+.+.. .+....|+|..|..++.+|++.+..||+
T Consensus         9 ~IC~~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~   45 (68)
T d1chca_           9 PICLEDPSN-YSMALPCLHAFCYVCITRWIRQNPTCPL   45 (68)
T ss_dssp             SSCCSCCCS-CEEETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred             ccCCcCccC-CcEEeCCCCcCcHHHHHHHHHhCCcCCC
Confidence            344444432 2456899999999999999999999997

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0002  Score=41.26  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=21.3

Q ss_pred             ccCCCCCChHHHHHHHHhC-----CCCCCC
Q psy17526         37 CQGCSHGGHLSHMQEWFMK-----NNVCPT   61 (70)
Q Consensus        37 C~~C~HggH~~h~~~Wf~~-----~~~CP~   61 (70)
                      -+.|+|..|..||.+|+..     +..||+
T Consensus        58 ~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~   87 (114)
T d1v87a_          58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPS   87 (114)
T ss_dssp             ESSSCCEECHHHHHHHHHHTCCSSCCBCTT
T ss_pred             ECCCCChhhHHHHHHHHHhcCcCCCCcccc
Confidence            4679999999999999985     347997

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.39  E-value=0.00091  Score=34.66  Aligned_cols=26  Identities=27%  Similarity=0.548  Sum_probs=22.5

Q ss_pred             cccCCCCCChHHHHHHHHhC--CCCCCC
Q psy17526         36 WCQGCSHGGHLSHMQEWFMK--NNVCPT   61 (70)
Q Consensus        36 ~C~~C~HggH~~h~~~Wf~~--~~~CP~   61 (70)
                      .|.+|+|-.|.++|++|++.  +.+||+
T Consensus        25 ~c~~c~h~~H~~Cl~~W~~~~~~~~CP~   52 (60)
T d1vyxa_          25 GCTGELENVHRSCLSTWLTISRNTACQI   52 (60)
T ss_dssp             CCSSGGGSCCHHHHHHHHHHHTCSBCTT
T ss_pred             ccCCCCCEEcHHHHHHHHhhCCCCCCcc
Confidence            47788999999999999964  568998

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0015  Score=34.41  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             ccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         37 CQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        37 C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      -..|+|..|.+++.+||++ ...||+
T Consensus        23 ~~~C~H~fc~~Ci~~~~~~~~~~CP~   48 (65)
T d1g25a_          23 VNVCGHTLCESCVDLLFVRGAGNCPE   48 (65)
T ss_dssp             ECTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred             eCccChHhhHHHHHHHhCcCcCCCCC
Confidence            3679999999999999976 467997

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0019  Score=32.73  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=21.1

Q ss_pred             cCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      ..|+|..|.+++++|++. +..||+
T Consensus        20 ~~CgH~~c~~C~~~w~~~~~~~CP~   44 (52)
T d1ur6b_          20 CTCGYQICRFCWHRIRTDENGLCPA   44 (52)
T ss_dssp             SSSSCCCCHHHHHHHTTTSCCBCTT
T ss_pred             cCCCCccchHHHHHHHhhcCCCCCc
Confidence            379999999999999987 457997

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.00059  Score=35.17  Aligned_cols=24  Identities=8%  Similarity=-0.009  Sum_probs=22.8

Q ss_pred             cCCCCCChHHHHHHHHhCCCCCCC
Q psy17526         38 QGCSHGGHLSHMQEWFMKNNVCPT   61 (70)
Q Consensus        38 ~~C~HggH~~h~~~Wf~~~~~CP~   61 (70)
                      ..|||..+.+++.+|++++.+||+
T Consensus        17 ~~cGh~fc~~cI~~~l~~~~~CP~   40 (56)
T d2baya1          17 PKSRTIFEKSLLEQYVKDTGNDPI   40 (56)
T ss_dssp             TTTTEEEEHHHHHHHHHHHSBCTT
T ss_pred             CCCCCcccHHHHHHHHhhccCCCc
Confidence            579999999999999999999998

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0029  Score=34.52  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.+.++...  -..|||..|.+++..|+.. ...||+
T Consensus        27 ~IC~~~~~~~~--~~~CgH~fC~~Ci~~wl~~~~~~CP~   63 (79)
T d1fbva4          27 KICAENDKDVK--IEPCGHLMCTSCLTSWQESEGQGCPF   63 (79)
T ss_dssp             TTTSSSBCCEE--CSSSCCEECHHHHHHHHHTTCCSCTT
T ss_pred             ccCCCcCCCeE--EeCCCCeeeHHHHHHHHHHCcCcCCC
Confidence            45555554433  3679999999999999975 578997

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.014  Score=32.73  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC---CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN---NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~---~~CP~   61 (70)
                      .||.+.+..-++  ..|||..+..++.+|+...   ..||.
T Consensus        25 pIC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~~~CP~   63 (103)
T d1jm7a_          25 PICLELIKEPVS--TKCDHIFCKFCMLKLLNQKKGPSQCPL   63 (103)
T ss_dssp             SSSCCCCSSCCB--CTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred             CccCchhCCeEE--cCCCCchhhHHHHHHHHHCCCCCcCcC
Confidence            345444444333  4699999999999999775   47997

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.13  E-value=0.029  Score=31.08  Aligned_cols=36  Identities=11%  Similarity=0.196  Sum_probs=28.8

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.+++..-.+  ..|||-....++++|+.. ...||+
T Consensus        27 ~IC~~~~~~pv~--~~CgH~FC~~Ci~~~~~~~~~~CP~   63 (86)
T d1rmda2          27 QICEHILADPVE--TSCKHLFCRICILRCLKVMGSYCPS   63 (86)
T ss_dssp             TTTCSBCSSEEE--CTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred             ccCCcchhccee--cCCCChhhHHHHHHHHhhCCCcCcc
Confidence            677777765444  579999999999999975 568998

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.76  E-value=0.094  Score=27.85  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=27.9

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhC-CCCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMK-NNVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~-~~~CP~   61 (70)
                      .||.++|+.-++  ..|||..-.+++++|+.. ...||.
T Consensus        11 pIc~~l~~dPv~--~~cGhtfc~~ci~~~l~~~~~~cP~   47 (80)
T d2c2la2          11 KISFELMREPCI--TPSGITYDRKDIEEHLQRVGHFNPV   47 (80)
T ss_dssp             TTTCSBCSSEEE--CSSCCEEETTHHHHHHHHTCSSCTT
T ss_pred             cCcCchhhhhcc--cCCcCeecHHHHHHHHhcCCccCCC
Confidence            556666666543  579999999999999986 457997

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.33  E-value=0.095  Score=27.63  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             HHHHhhhhcccccccCCCCCChHHHHHHHHhCC-CCCCC
Q psy17526         24 MLVFCLVSGLYSWCQGCSHGGHLSHMQEWFMKN-NVCPT   61 (70)
Q Consensus        24 ~iC~~~v~~l~~~C~~C~HggH~~h~~~Wf~~~-~~CP~   61 (70)
                      .||.++|+--++  ..|||..-.+++++|+..+ ..||.
T Consensus        12 pIc~~~m~dPV~--~~cgh~fc~~ci~~~~~~~~~~cP~   48 (78)
T d1t1ha_          12 PISLELMKDPVI--VSTGQTYERSSIQKWLDAGHKTCPK   48 (78)
T ss_dssp             TTTSCCCSSEEE--ETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred             cCcCchhhCceE--ccCCCcchHHHHHHHHHHCCCCCCc
Confidence            566666666554  4799999999999999874 67997

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.22  Score=22.69  Aligned_cols=12  Identities=17%  Similarity=0.598  Sum_probs=10.9

Q ss_pred             CcccCccCCCCC
Q psy17526          1 MNAHSDRCQHGL   12 (70)
Q Consensus         1 ~~~~C~~C~~~l   12 (70)
                      |+-.||+|+|+.
T Consensus         1 M~~~CprC~K~V   12 (30)
T d2cu8a1           1 MASKCPKCDKTV   12 (30)
T ss_dssp             CCCBCTTTCCBC
T ss_pred             CCCcCCCCCCce
Confidence            788999999987

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.2  Score=26.97  Aligned_cols=31  Identities=13%  Similarity=0.215  Sum_probs=23.6

Q ss_pred             ccccCCCCCChHHHHHHHHhCC--------CCCCC-CCCc
Q psy17526         35 SWCQGCSHGGHLSHMQEWFMKN--------NVCPT-GCGH   65 (70)
Q Consensus        35 ~~C~~C~HggH~~h~~~Wf~~~--------~~CP~-gC~c   65 (70)
                      +.-+.|+|-.+.+++++|+...        -.||. +|+.
T Consensus        21 ~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~   60 (94)
T d1wima_          21 TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK   60 (94)
T ss_dssp             EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred             EEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCCC
Confidence            4457899999999999999741        24997 6653