Psyllid ID: psy17541

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------
MTQDSPVKSDNTLTKSQKRRNRKKLKTQKGILSCGKAQDNPKSSTSEASTTRTHSSECPNQFKQEIRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYTSPSSVQTTPASLSQVTTAIMSEKNNSAELSRDLVKAQREAKKAAKLAAKQKAKVKGDVTAPPDAVTQPESKQSEPSKAKSKSEPSKEANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKTSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVKPTETQ
ccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHcccccEEEEcccHHcccccHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHccccccc
ccccccccccccccHHHHHHHHHHHHccccEEccccccccccccccccccccccccccccHcHHHccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccEEEEcccccccccEEEEEEcccccccccccHHHHHHHHHHEcccccccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHccccccccccHHHHccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHccEEcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHcEEEEcHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEcEEEccccccccccccccccHHHHccccccccccccccccEEEccccccccHHHEHEEEHcccccccccccEEEEEcccccc
mtqdspvksdntltkSQKRRnrkklktqkgilscgkaqdnpksstseasttrthssecpnqfkqeirdtpltesednvnlcyecsnqgpinnkGLLLHAALNDYQSACQVSEQEVKQFFdskgiytycskplsgnkeiplysatgpssckapqfiscaeqliytspssvqttpasLSQVTTAIMSEKNNSAELSRDLVKAQREAKKAAKLAAKQKAKvkgdvtappdavtqpeskqsepskaksksepskeanvqnkpaqgsqdtpkpggppatlsnvdnkenvksegdevKSKAQLKAERRAKQEQQRQAKAAALLEKTktsneksmtksktedskpasekssktevlkskdpnvpstkkysgvdgvkatpgttlVHKVKLFNHLyrdnlsvtqpsevhpaiYRLGVQYATGVVRGSNARCVALLSAIKQMVcdyttpsekeysrgfeerlgpamsylnkcrphsVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHnklanddvilTYGCSSLVEKILLTAHEKGTKFRVIIvdgspwyegKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALlsngavmsrAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFnelgdpnelisdkSAAKNWKSLahltplsltyditpshlVTAVITELaivpctsvpvvlrvkptetq
mtqdspvksdntltksqkrrnrkklktqkgilscgkaqdnpksstseasttrthssecpnqfkQEIRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYTSPSSVQTTPASLSQVTTAIMSEKNNSAELSRDLVKAQREAKKAAKLAAkqkakvkgdvtappdavtqpeskqsepskaksksepskeanvqnkpaqgsqdtpkpggppatlsnvdnkenvksegdevkskaqLKAERRAKQEQQRQAKAAALlektktsneksmtksktedskpasekssktevlkskdpnvpstkkysgvdgvkatpgTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLtahekgtkfrvIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITElaivpctsvpvvlrvkptetq
MTQDSPVKSDNTLTKSQKRRNRKKLKTQKGILSCGKAQDNPKSSTSEASTTRTHSSECPNQFKQEIRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYTSPSSVQTTPASLSQVTTAIMSEKNNSAELSRDLVkaqreakkaaklaakqkakvkGDVTAPPDAVTQpeskqsepskaksksepskeANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSEGDEVKSKAQLkaerrakqeqqrqakaaallektktSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVKPTETQ
*****************************************************************************VNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYT***********************************************************************************************************************************************************************************************************VKATPGTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTP********F**RLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRV******
*****************************************************************IRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLS*NKEIPLYSATGP**C*******CA***IY*********************************************************************************************************************************************************************************************************************VHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVL*VKP****
******************************ILSC**************************QFKQEIRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYTS************QVTTAIMSEKNNSAELSRDLV************************************************************************PPATLSNVDNKEN*******************************ALLEK***********************************NVPSTKKYSGVDGVKATPGTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVKPTETQ
***********TLTKSQKRRNRKKL*****ILSCGK*********************CP*Q****IRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYTSPS******************************************************************************************************************************************************************************************************************HKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVKP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTQDSPVKSDNTLTKSQKRRNRKKLKTQKGILSCGKAQDNPKSSTSEASTTRTHSSECPNQFKQEIRDTPLTESEDNVNLCYECSNQGPINNKGLLLHAALNDYQSACQVSEQEVKQFFDSKGIYTYCSKPLSGNKEIPLYSATGPSSCKAPQFISCAEQLIYTSPSSVQTTPASLSQVTTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKGDVTAPPDAVTQPESKQSEPSKAKSKSEPSKEANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSEGDEVKSxxxxxxxxxxxxxxxxxxxxxALLEKTKTSNEKSMTKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTTLVHKVKLFNHLYRDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVKPTETQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query717 2.2.26 [Sep-21-2011]
Q61749524 Translation initiation fa yes N/A 0.571 0.782 0.465 1e-105
Q9UI10523 Translation initiation fa yes N/A 0.571 0.783 0.468 1e-105
Q63186524 Translation initiation fa yes N/A 0.571 0.782 0.467 1e-104
P41111523 Translation initiation fa yes N/A 0.571 0.783 0.467 1e-103
Q3T058524 Translation initiation fa yes N/A 0.602 0.824 0.459 1e-103
Q54FM3619 Translation initiation fa yes N/A 0.458 0.531 0.432 6e-77
Q09924467 Probable translation init yes N/A 0.461 0.708 0.416 2e-76
P12754651 Translation initiation fa yes N/A 0.365 0.402 0.352 7e-43
Q57586308 Putative translation init yes N/A 0.372 0.866 0.269 2e-22
Q9V281324 Putative translation init yes N/A 0.400 0.885 0.276 8e-22
>sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2 Back     alignment and function desciption
 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/443 (46%), Positives = 282/443 (63%), Gaps = 33/443 (7%)

Query: 292 KSKAQLKAERRAKQEQQRQAKAAALLEKT--------KTSNEKSMTKSKTEDSKPASEKS 343
           +SKA+L+AERRAKQE +R  K A   E+          T+ E +    +  +  PA + +
Sbjct: 95  RSKAELRAERRAKQEAERALKQARKGEQGGVPPQACPSTAGETTSGVKRVPEHTPADDPT 154

Query: 344 SKTEVLKSKD-PNVPSTKKYSGVDGVKATPGTTLVHKVKLFNHL--YRDNLSVTQ----P 396
               +L+  D   VP+ K Y                KV LF+HL  Y    S+TQ    P
Sbjct: 155 LLRRLLRKPDRQQVPTRKDYGS--------------KVSLFSHLPQYSRQSSLTQYMSIP 200

Query: 397 SEV-HPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPA 455
           S V HPA+ RLG+QY+ G++ GSNARC+ALL A++Q++ DYTTP  +E SR    +L P 
Sbjct: 201 SSVIHPAMVRLGLQYSQGLISGSNARCIALLHALQQVIQDYTTPPSEELSRDLVNKLKPY 260

Query: 456 MSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAI 515
           +S+L +CRP S SM NA+K     +T + +   + +A+  L+E +  Y+ E++ +A  AI
Sbjct: 261 ISFLTQCRPMSASMCNAIKFLTKEVTGMSSSKREEEAKSELREALDRYVQEKIVLAAQAI 320

Query: 516 CMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKH 575
             F   K+++ DVIL YGCSSLV +IL  A  +G +FRV++VD  P  EG+ ML  LV+ 
Sbjct: 321 SRFASTKISDGDVILVYGCSSLVSRILQEARVEGRRFRVVVVDSRPRLEGRHMLHSLVRA 380

Query: 576 QVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACE 635
            V  SY+L+ A SY++ EVSKV++GAHALL+NG+VMSR GTAQ++LVARA NVPVL  CE
Sbjct: 381 GVPTSYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCE 440

Query: 636 THKFCERVQTDALVFNELGDPNEL---ISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTA 692
           T+KFCERVQTDA V NEL DP++L     D+ A  NW+S   L  L+L YD+TP  LV  
Sbjct: 441 TYKFCERVQTDAFVSNELDDPDDLQCKRGDQVALANWQSHPSLRLLNLVYDVTPPELVDL 500

Query: 693 VITELAIVPCTSVPVVLRVKPTE 715
           VITEL ++PC+SVPVVLRVK ++
Sbjct: 501 VITELGMIPCSSVPVVLRVKSSD 523
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Mus musculus (taxid: 10090)
>sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 Back     alignment and function description
>sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 Back     alignment and function description
>sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 Back     alignment and function description
>sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 Back     alignment and function description
>sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 Back     alignment and function description
>sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 Back     alignment and function description
>sp|P12754|EI2BD_YEAST Translation initiation factor eIF-2B subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD2 PE=1 SV=1 Back     alignment and function description
>sp|Q57586|EI2B2_METJA Putative translation initiation factor eIF-2B subunit 2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0122 PE=3 SV=1 Back     alignment and function description
>sp|Q9V281|EI2B2_PYRAB Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=aIF-2BII PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query717
345494119515 PREDICTED: translation initiation factor 0.578 0.805 0.538 1e-129
328778190511 PREDICTED: translation initiation factor 0.581 0.816 0.503 1e-126
350423873534 PREDICTED: translation initiation factor 0.585 0.786 0.506 1e-126
340726298538 PREDICTED: LOW QUALITY PROTEIN: translat 0.587 0.782 0.505 1e-125
380024276513 PREDICTED: translation initiation factor 0.581 0.812 0.498 1e-124
383860937729 PREDICTED: translation initiation factor 0.570 0.561 0.510 1e-122
307171476548 Translation initiation factor eIF-2B sub 0.615 0.804 0.485 1e-121
322795959541 hypothetical protein SINV_09518 [Solenop 0.569 0.754 0.496 1e-119
332018353546 Translation initiation factor eIF-2B sub 0.584 0.767 0.478 1e-118
345494121675 PREDICTED: translation initiation factor 0.559 0.594 0.514 1e-117
>gi|345494119|ref|XP_001605978.2| PREDICTED: translation initiation factor eIF-2B subunit delta-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/449 (53%), Positives = 319/449 (71%), Gaps = 34/449 (7%)

Query: 279 DNKENVKSEGDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKTSNEKSMTKSKTEDSKP 338
           D K N +S+ +E KSKA+L+AERRAKQE QR AK A + +K K    + +T SK + S P
Sbjct: 88  DKKMNDESKAEE-KSKAELRAERRAKQEAQRAAKQALVNDKKKVIKPEKVT-SKEKSSAP 145

Query: 339 AS-EKSSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTTLVHKVKLFNHLY--RDNLSVTQ 395
            S E+  K  ++KS+               VK       +H+V LF HLY  R N+S   
Sbjct: 146 VSKEEPVKKLIVKSE---------------VKDN-----LHEVNLFKHLYINRKNISQLI 185

Query: 396 PS---EVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERL 452
            S   ++HPAI RLG+QYA  V+ GSNARCVALL+A+KQ++ DY  PS+ +++RG E  L
Sbjct: 186 NSSNVKMHPAILRLGIQYAEKVIVGSNARCVALLAAVKQLIKDYERPSQADFTRGLETSL 245

Query: 453 GPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAG 512
             +++YLN CRP +VSM NA+KH K  ++ LP+ I D +A+ +L   I TYI EQ+ +A 
Sbjct: 246 QESINYLNFCRPSAVSMQNALKHLKWQMSTLPSTIPDQEAKTKLANAIDTYIQEQILLAD 305

Query: 513 NAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRL 572
            AI      K+ N DVILTYG SSL+ KIL  A+  G KFRV++VDG PW EGKE+LRRL
Sbjct: 306 KAISNAIQKKILNGDVILTYGFSSLIHKILCDAYTAGKKFRVVVVDGRPWLEGKELLRRL 365

Query: 573 VKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA 632
           VKH VDCSY+L++A+S+IM +VSKV +GAHA+L+NGAVMSR GTAQV+L+A+AFNVPVL 
Sbjct: 366 VKHGVDCSYILINALSFIMPQVSKVFLGAHAILANGAVMSRVGTAQVALIAKAFNVPVLV 425

Query: 633 ACETHKFCERVQTDALVFNELGDPNELI------SDKSAAKNWKSLAHLTPLSLTYDITP 686
           ACETHK CERVQTD++V+NE+GDP++L+      S KS+  NWKS   L  L++TYD+TP
Sbjct: 426 ACETHKSCERVQTDSIVYNEIGDPDQLVKNTSNGSKKSSLSNWKSRKTLNLLNITYDVTP 485

Query: 687 SHLVTAVITELAIVPCTSVPVVLRVKPTE 715
           + LVTAV+TELAI+PCTSVPV+LR+KP+E
Sbjct: 486 ADLVTAVVTELAILPCTSVPVILRIKPSE 514

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328778190|ref|XP_001119855.2| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350423873|ref|XP_003493618.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340726298|ref|XP_003401497.1| PREDICTED: LOW QUALITY PROTEIN: translation initiation factor eIF-2B subunit delta-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380024276|ref|XP_003695929.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Apis florea] Back     alignment and taxonomy information
>gi|383860937|ref|XP_003705943.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307171476|gb|EFN63320.1| Translation initiation factor eIF-2B subunit delta [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322795959|gb|EFZ18585.1| hypothetical protein SINV_09518 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332018353|gb|EGI58958.1| Translation initiation factor eIF-2B subunit delta [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345494121|ref|XP_003427223.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query717
FB|FBgn0034858626 eIF2B-delta "eIF2B-delta" [Dro 0.531 0.608 0.493 1.1e-95
ZFIN|ZDB-GENE-030131-955541 eif2b4 "eukaryotic translation 0.467 0.619 0.530 1.4e-95
UNIPROTKB|F1NDW0503 EIF2B4 "Uncharacterized protei 0.629 0.896 0.435 1.3e-92
UNIPROTKB|E7ERK9544 EIF2B4 "Translation initiation 0.470 0.619 0.527 1.6e-92
UNIPROTKB|Q9UI10523 EIF2B4 "Translation initiation 0.470 0.644 0.527 1.6e-92
RGD|620208524 Eif2b4 "eukaryotic translation 0.470 0.643 0.524 3.8e-91
MGI|MGI:95300524 Eif2b4 "eukaryotic translation 0.470 0.643 0.518 3.8e-91
UNIPROTKB|E2R8W5546 EIF2B4 "Uncharacterized protei 0.470 0.617 0.521 4.9e-91
UNIPROTKB|F1PAD0525 EIF2B4 "Uncharacterized protei 0.470 0.641 0.521 4.9e-91
UNIPROTKB|F1MMQ5524 EIF2B4 "Translation initiation 0.470 0.643 0.524 1e-90
FB|FBgn0034858 eIF2B-delta "eIF2B-delta" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 928 (331.7 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 192/389 (49%), Positives = 256/389 (65%)

Query:   329 TKSKTEDSKPASEKSSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTTLVHKVKLFNHLY- 387
             TK     +K     + K    KS  P   +T   S V    +TP      +VKLFNHL  
Sbjct:   238 TKKAQHAAKAPPSAAPKGPNRKSVSPTTAATSS-SPVKCPASTPNVDC--RVKLFNHLVC 294

Query:   388 --RDNLSVTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYS 445
                D+  +  P  VHP+I RLGVQYA   V GSNARC+A L A++Q+V D+ TP++KE+ 
Sbjct:   295 AKEDSQFINDPL-VHPSIARLGVQYAKRTVVGSNARCIAFLHALRQVVHDFETPAKKEFG 353

Query:   446 RGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIH 505
             R  +  +   + +L+KCRP +VS+ NA K FK+ LTQLP D+ +T+++  L   I TYI 
Sbjct:   354 RSLDAAVKHHVDHLHKCRPLAVSVSNAYKQFKNQLTQLPADVPETESKELLVHFIDTYIE 413

Query:   506 EQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEG 565
              Q+  A  AI  F   K+ + DV+LT+ CSSL++ I   A  +   FRVI+VD  P  EG
Sbjct:   414 NQIGKAAQAISGFLQEKITDGDVLLTFACSSLIQFICEEAKRRQVAFRVIVVDSRPGCEG 473

Query:   566 KEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARA 625
             +E+LRRL    + C+YVL++AV Y+M E +KV++GAHALL+NG VM+R GTAQV+LVA A
Sbjct:   474 QELLRRLHATGIPCTYVLINAVGYVMAEATKVLLGAHALLANGYVMARTGTAQVALVANA 533

Query:   626 FNVPVLAACETHKFCERVQTDALVFNELGDPNELI-SDKSAAKNWKSLAHLTPLSLTYDI 684
              NVPVL  CETHKF ER QTDA+V+NEL DPN+L+  DK    NW +   L PL+L+YDI
Sbjct:   534 HNVPVLVCCETHKFSERFQTDAIVYNELSDPNQLVRGDKCQLSNWAAKGKLLPLNLSYDI 593

Query:   685 TPSHLVTAVITELAIVPCTSVPVVLRVKP 713
             TP  LV+AV+TE+AI+PCTSVPV+LR+KP
Sbjct:   594 TPPELVSAVVTEVAILPCTSVPVILRIKP 622
GO:0006413 "translational initiation" evidence=ISS
GO:0005829 "cytosol" evidence=ISS;NAS
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0022008 "neurogenesis" evidence=IMP
GO:0006446 "regulation of translational initiation" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
GO:0045947 "negative regulation of translational initiation" evidence=IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA
GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IBA
GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA
ZFIN|ZDB-GENE-030131-955 eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDW0 EIF2B4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E7ERK9 EIF2B4 "Translation initiation factor eIF-2B subunit delta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UI10 EIF2B4 "Translation initiation factor eIF-2B subunit delta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620208 Eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:95300 Eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8W5 EIF2B4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAD0 EIF2B4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMQ5 EIF2B4 "Translation initiation factor eIF-2B subunit delta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3T058EI2BD_BOVINNo assigned EC number0.45920.60250.8244yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 1e-78
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 2e-66
PRK08535310 PRK08535, PRK08535, translation initiation factor 1e-35
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 3e-32
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 4e-23
PRK08335275 PRK08335, PRK08335, translation initiation factor 2e-16
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 7e-14
COG0182346 COG0182, COG0182, Predicted translation initiation 2e-12
PRK05772363 PRK05772, PRK05772, translation initiation factor 3e-09
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 1e-08
PRK06371329 PRK06371, PRK06371, translation initiation factor 9e-08
PRK06036339 PRK06036, PRK06036, translation initiation factor 3e-07
PRK06372253 PRK06372, PRK06372, translation initiation factor 3e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-05
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 4e-05
PRK13808333 PRK13808, PRK13808, adenylate kinase; Provisional 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PRK05901509 PRK05901, PRK05901, RNA polymerase sigma factor; P 0.002
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information 
 Score =  252 bits (646), Expect = 1e-78
 Identities = 92/289 (31%), Positives = 150/289 (51%), Gaps = 8/289 (2%)

Query: 414 VVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAV 473
            VRGS A  +A L  +  ++ D  TP         +E+L  A+ +L   RP +VS+ NA+
Sbjct: 1   KVRGSPAIAIAALEGLLLVIQDARTP----TVAELKEQLRSAIEFLISARPTAVSLGNAI 56

Query: 474 KHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYG 533
                 +++L +     +A+  L E    +I E    A   I       + + D ILT+ 
Sbjct: 57  DRLLRIISELHSSSDVEEAKESLIEAADEFIDEIE-EARRKIGAIAAELIKDGDTILTHC 115

Query: 534 CSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMRE 593
            S  V  +L  AH++G +FRVI+ +  P  +G+   + LV+  +  + +  SAV Y+M+E
Sbjct: 116 NSGTVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQE 175

Query: 594 VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFNEL 653
           V KVI+GA  +L+NG + ++ GT Q++L+A+A NVP     ET+KF  R   D  +F E 
Sbjct: 176 VDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEE 235

Query: 654 GDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPC 702
            DP E++         ++L    P    +D TP  L+T +ITE+ ++P 
Sbjct: 236 RDPEEVLYRTGVRIAPENLKVRNP---AFDYTPPELITLIITEVGVLPP 281

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 717
KOG1467|consensus556 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
KOG1466|consensus313 100.0
KOG1465|consensus353 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
KOG1468|consensus354 100.0
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 97.69
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.62
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.54
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.45
PRK13509251 transcriptional repressor UlaR; Provisional 97.33
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 97.31
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 97.25
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 97.12
PRK10411240 DNA-binding transcriptional activator FucR; Provis 97.01
COG1349253 GlpR Transcriptional regulators of sugar metabolis 96.77
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 96.25
PLN02384264 ribose-5-phosphate isomerase 95.02
PRK13978228 ribose-5-phosphate isomerase A; Provisional 93.98
KOG0259|consensus 447 92.02
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 88.6
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 88.25
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 87.85
TIGR00474 454 selA seryl-tRNA(sec) selenium transferase. In bact 87.81
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 86.46
PF01073280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 81.99
cd00293130 USP_Like Usp: Universal stress protein family. The 81.95
TIGR01437363 selA_rel uncharacterized pyridoxal phosphate-depen 81.82
PRK04311 464 selenocysteine synthase; Provisional 80.91
>KOG1467|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-106  Score=870.18  Aligned_cols=526  Identities=41%  Similarity=0.608  Sum_probs=406.4

Q ss_pred             ccCccccccchhhccCCCCc--hhhhcHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCcccCCCccccCCCC
Q psy17541        170 QTTPASLSQVTTAIMSEKNN--SAELSRDLVKAQREAKKAAKLAAKQKAKVKGDVTAPPDAVTQPESKQSEPSKAKSKSE  247 (717)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~kk~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (717)
                      -+++.|...+..++..+-.+  ++++|+|++++||++||++|+++++..-- .++-.+|+... +.+++..-....++.+
T Consensus         7 tt~e~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~-~~~~~~p~~~t-~s~~~~~~~~~~s~~~   84 (556)
T KOG1467|consen    7 TTDELSPIDKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG-EDKNAEPKDLT-ASAKQARVAVKASLPK   84 (556)
T ss_pred             cccccCccchhhhccccccCccccccchHHHHHHHHHhhcCccccccccCC-CccccCccccc-ccccccccchhhcccC
Confidence            34555555555555533333  78999999999999999987666443211 11112222211 2222222111222222


Q ss_pred             CcccccccCCCCCCCCCCCCCCCCCCccccCCCccCcccc-CcccCChhhhHHHHHHHHHHHHHHHHHHhhccccC----
Q psy17541        248 PSKEANVQNKPAQGSQDTPKPGGPPATLSNVDNKENVKSE-GDEVKSKAQLKAERRAKQEQQRQAKAAALLEKTKT----  322 (717)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~kska~~kAERRA~QEaqRAaKa~~k~~~~~~----  322 (717)
                      .-.+...-++....       ++..++-       .++.+ .+.+-+-..++||||+.||++||+|++++++.+..    
T Consensus        85 ~~~e~t~a~~a~~~-------a~~s~~~-------~p~~~~~~ka~~~~~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~  150 (556)
T KOG1467|consen   85 GGAELTVANKAAAA-------AGSSATQ-------SPKKEKPPKAGLAVPTRAERKAIQEAKRAAKTAEKGEGARKAQVI  150 (556)
T ss_pred             Ccceecccccchhh-------hcccccc-------CCcccCCcccccccccHHHHhhHHHHHHHHHHhhhcccccccccc
Confidence            22222222211110       0000110       11111 11122333459999999999999999999997532    


Q ss_pred             -CcccccccCccCCC--CCCCcc---CchhhhccCCCCCCCCCCCCCCCCCCCCCCCcc-ccccccccccCccCCCC---
Q psy17541        323 -SNEKSMTKSKTEDS--KPASEK---SSKTEVLKSKDPNVPSTKKYSGVDGVKATPGTT-LVHKVKLFNHLYRDNLS---  392 (717)
Q Consensus       323 -~~~~~~~~~~~~~~--~~~~~~---~~~~~v~k~~~~~~p~~~~~~~~~~a~~~~~~~-~~~~v~lFsHL~~~~~~---  392 (717)
                       ++.+++..+++.|.  +.+.|.   ++. +.   ++..++.+++..-........|.. ...+|.||+||+||++.   
T Consensus       151 ~~~kA~~s~a~~~P~~~k~~~p~~t~~~~-~~---~~~~~~~pq~q~kt~~~~~~~rk~V~~~~v~lf~hL~q~~~~tt~  226 (556)
T KOG1467|consen  151 ERAKANASTAPAIPAVKKNALPVTTSVDQ-AL---KRRAVQNPQNQAKTLASASASRKAVASQKVSLFTHLPQYDRATTQ  226 (556)
T ss_pred             cccccCcccccCCCccccccccccccccc-hH---HhhcccchhhhhhhhcccCccccccccceehhhhhhhHhhccccc
Confidence             11122222222221  111111   122 22   233444444311000000011111 12389999999999997   


Q ss_pred             CCCCCChhHHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHH
Q psy17541        393 VTQPSEVHPAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNA  472 (717)
Q Consensus       393 ~~~~~~IHPAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNA  472 (717)
                      +.....|||+|++||++|+.|.|.|+|+|||+||++|++||+||++|..++|+|+|...|+++++||.+|||++++||||
T Consensus       227 f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNA  306 (556)
T KOG1467|consen  227 FIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNA  306 (556)
T ss_pred             ccccccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHH
Confidence            23344499999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCee
Q psy17541        473 VKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKF  552 (717)
Q Consensus       473 IR~Lk~~I~~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~F  552 (717)
                      ||||+++|+.++.+.++.++|+.|++.|++||+|+|..|.+.|++++.++|.|||+|||||+|++|..+|++||+.|++|
T Consensus       307 iRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~f  386 (556)
T KOG1467|consen  307 IRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKF  386 (556)
T ss_pred             HHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEe
Q psy17541        553 RVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLA  632 (717)
Q Consensus       553 rVIVvESRP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV  632 (717)
                      +|+|+||||++||+.++++|..+||+|+|+++++++|+|.+|++||||||+||+||+||+|+||++|||+|++|||||+|
T Consensus       387 rVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlV  466 (556)
T KOG1467|consen  387 RVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLV  466 (556)
T ss_pred             EEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccccccCCcccccccCCccccccccc-----cccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhH
Q psy17541        633 ACETHKFCERVQTDALVFNELGDPNELISDKS-----AAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPV  707 (717)
Q Consensus       633 ~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~-----~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpv  707 (717)
                      |||+|||++|+|+|++++|||+||++|....+     .|.+|....++.++|++||+||||||++||||+|++|||||||
T Consensus       467 CCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPv  546 (556)
T KOG1467|consen  467 CCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPV  546 (556)
T ss_pred             EechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchH
Confidence            99999999999999999999999998876644     4789999999999999999999999999999999999999999


Q ss_pred             HhhcCCCC
Q psy17541        708 VLRVKPTE  715 (717)
Q Consensus       708 VLR~k~~~  715 (717)
                      |||+|...
T Consensus       547 ilr~~~~~  554 (556)
T KOG1467|consen  547 ILREKKLT  554 (556)
T ss_pred             HHhhhhcc
Confidence            99999764

>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1466|consensus Back     alignment and domain information
>KOG1465|consensus Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>KOG1468|consensus Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>KOG0259|consensus Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>TIGR00474 selA seryl-tRNA(sec) selenium transferase Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme Back     alignment and domain information
>PRK04311 selenocysteine synthase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-24
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-24
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-24
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-24
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-24
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-23
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 2e-15
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 2e-11
2yrf_A374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 1e-10
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 5e-09
2a0u_A383 Crystal Structure Of The Eukaryotic Initiation Fact 5e-07
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 6e-04
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b From Leishmania Major At 2.1 A Resolution Length = 383 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query717
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 3e-80
3a11_A338 Translation initiation factor EIF-2B, delta subun; 2e-31
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 5e-30
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 3e-16
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 9e-16
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 6e-15
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 8e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 2e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  257 bits (659), Expect = 3e-80
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 13/299 (4%)

Query: 414 VVRG-SNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNA 472
           +      A  VA +  + + +       + E  +G    L  A+  L      SV++ + 
Sbjct: 14  MKEDPDMASAVAAIRTLLEFL----KRDKGETIQGLRANLTSAIETL-CGVDSSVAVSSG 68

Query: 473 VKHFKSHLTQLPNDITD-TQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILT 531
            + F   ++    + +D ++ +  + E        ++ ++ N I    H  + +   ILT
Sbjct: 69  GELFLRFISLASLEYSDYSKCKKIMIERGEL-FLRRISLSRNKIADLCHTFIKDGATILT 127

Query: 532 YGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIM 591
           +  S +V ++L  A     +F V + +  P   GK+M + L    V  + VL +AV YIM
Sbjct: 128 HAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIM 187

Query: 592 REVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKFCERVQTDALVFN 651
            +   VI+GA  ++ NG ++++ GT Q+++ A+A N P     E+ KF           N
Sbjct: 188 EKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP-----LN 242

Query: 652 ELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLR 710
           +   P++        K  ++   L       D T   L+T + T+L ++  ++V   L 
Sbjct: 243 QQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELI 301
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query717
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.68
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.16
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 97.94
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 97.84
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 97.84
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 97.68
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 97.55
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.47
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.47
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.46
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 97.41
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 96.85
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 90.42
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 86.76
3g0t_A 437 Putative aminotransferase; NP_905498.1, putative a 86.21
3i6i_A 346 Putative leucoanthocyanidin reductase 1; rossmann 85.63
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 85.36
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 83.83
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 82.63
2hj0_A519 Putative citrate lyase, ALFA subunit; alpha beta p 82.43
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
Probab=100.00  E-value=6.9e-70  Score=578.16  Aligned_cols=304  Identities=26%  Similarity=0.364  Sum_probs=282.9

Q ss_pred             HHHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHH
Q psy17541        401 PAIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHL  480 (717)
Q Consensus       401 PAVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I  480 (717)
                      ..+..++..|++++|+||++++++++.+|..++..+.+++    ..+|.+.|+.++++|.++||++++|+|+++++++.+
T Consensus        21 ~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~~~~~----~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~~~~~i   96 (338)
T 3a11_A           21 KEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKSKATN----VDEFWKEMKQAAKILFETRPTAVSLPNALRYVMHRG   96 (338)
T ss_dssp             SHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHCCCCS----HHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            5688899999999999999999999999999999987754    357889999999999999999999999999999988


Q ss_pred             hc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCchHHHHHHHHHHHcCCeeEEEEcCC
Q psy17541        481 TQ-LPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDG  559 (717)
Q Consensus       481 ~~-l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SStV~~vL~~A~e~Gk~FrVIVvES  559 (717)
                      +. +....+.+++|+.|++.+++|+++. ..+++.|++++.++|++|++|||||+|++|+++|+.|+++|++|+|||+||
T Consensus        97 ~~~~~~~~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~gk~~~V~v~Et  175 (338)
T 3a11_A           97 KIAYSSGADLEQLRFVIINAAKEFIHNS-EKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTET  175 (338)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            74 2223578899999999999999654 568999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhCCCcEEEEcchHHHHHhhhccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcEEecccCCcc
Q psy17541        560 SPWYEGKEMLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPVLAACETHKF  639 (717)
Q Consensus       560 RP~~EGr~lA~~L~~~GI~vTyI~DSAVsyiM~~VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPVyV~cEtyKF  639 (717)
                      ||++||++||++|.+.|||||||+|+|++|+|.+||+||+|||+|++||+++||+|||++|++||+||||||||||+|||
T Consensus       176 RP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~  255 (338)
T 3a11_A          176 RPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAETYKF  255 (338)
T ss_dssp             TTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECCGGGB
T ss_pred             CCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCCCChhHHhhcC
Q psy17541        640 CERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPCTSVPVVLRVK  712 (717)
Q Consensus       640 s~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpPsSVpvVLR~k  712 (717)
                      ++.++.|..+++|+++|+|++.. +....|  ++++.++||+||||||+|||+||||.|+++|++|+.+||++
T Consensus       256 d~~~~~g~~i~iE~r~~~ev~~~-g~~~~w--~~~v~v~NPaFDvTP~~lIt~iITE~Gv~~p~~v~~~L~e~  325 (338)
T 3a11_A          256 HPETMLGQLVEIEMRDPTEVIPE-DELKTW--PKNIEVWNPAFDVTPPEYVDVIITERGIIPPYAAIDILREE  325 (338)
T ss_dssp             CSCCSSSSCCCCCBCCGGGTSCH-HHHTTS--CTTEEECCBSEEEECGGGCSEEEETTEEECGGGHHHHHHHH
T ss_pred             cccCCCCcccccccCCHHHcccc-cccccC--CCCceecCcceeccCHHHcCEEecCCCccCchhHHHHHHHH
Confidence            99999999999999999999875 321123  57899999999999999999999999999999999999974
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 717
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 5e-43
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 2e-42
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 1e-37
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 6e-33
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 2e-30
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  154 bits (391), Expect = 5e-43
 Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 28/259 (10%)

Query: 448 FEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLTQLPNDITDTQARLRLKEVIATYIHEQ 507
            E+ +      + K  P   S+ N  +            I  T  R  LK   A     +
Sbjct: 43  LEDAIMELREEVVKVNPSMASLYNLARF-----------IPVTNRRDILKSR-ALEFLRR 90

Query: 508 VDMAGNAICMFFHNKLANDDVILTYGCSSLVEKILLTAHEKGTKFRVIIVDGSPWYEGKE 567
           ++ A   +       + + DVI+T+  SS V +I+ TA E+  +F+VI+ + SP YEG  
Sbjct: 91  MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLH 150

Query: 568 MLRRLVKHQVDCSYVLLSAVSYIMREVSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFN 627
           + R L    ++   +  + +    RE S  I+GA  +  +G V+++AGT  ++L      
Sbjct: 151 LARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENA 210

Query: 628 VPVLAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPS 687
           +P   A ET+KF   +++  ++  E     +LI      +N           + +D+TP 
Sbjct: 211 IPFYVAAETYKFHPTLKSGDVMLME----RDLIRGNVRIRN-----------VLFDVTPW 255

Query: 688 HLVTAVITELAIV-PCTSV 705
             V  +ITEL IV P   +
Sbjct: 256 KYVRGIITELGIVIPPRDI 274
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query717
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.23
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.18
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.92
d1a9xa2138 Carbamoyl phosphate synthetase, large subunit allo 81.72
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.2e-63  Score=527.86  Aligned_cols=297  Identities=23%  Similarity=0.278  Sum_probs=267.6

Q ss_pred             HHHHHHHHHhcCcccChHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHh
Q psy17541        402 AIYRLGVQYATGVVRGSNARCVALLSAIKQMVCDYTTPSEKEYSRGFEERLGPAMSYLNKCRPHSVSMLNAVKHFKSHLT  481 (717)
Q Consensus       402 AVlrLGlq~a~~~I~GSnaraiAaL~ALkqVI~Dy~tp~~~~lsr~L~~~Lk~ai~~L~~aRPtsVSmgNAIR~Lk~~I~  481 (717)
                      .+..+...|+++.|+||.++++++..+|...+.+....+.    .+|.+.|+..+++|.++||++++|.|++++++..+.
T Consensus        30 ~~~~v~~AI~~M~VRGAPaIgvaaa~glala~~~~~~~~~----~e~~~~L~~a~~~L~~aRPTAVnL~nAl~r~~~~~~  105 (340)
T d1t5oa_          30 NVEELADAIKKLAVRGAPALEAAGAYGIALAAREREFADV----DELKEHLKKAADFLASTRPTAVNLFVGIERALNAAL  105 (340)
T ss_dssp             SHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSSCCSCH----HHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhHcCcccCcHHHHHHHHHHHHHHHHhhhcCCc----hhhHHHHHHHHHHHHhcCccchhHHHHHHHHhhhhh
Confidence            3667889999999999999999999999888887765553    468889999999999999999999999999998885


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEecCch--------HHHHHHHHHHHcCCeeE
Q psy17541        482 QLPNDITDTQARLRLKEVIATYIHEQVDMAGNAICMFFHNKLANDDVILTYGCSS--------LVEKILLTAHEKGTKFR  553 (717)
Q Consensus       482 ~l~~~~s~ee~Ke~Lie~IdefI~ErI~~A~e~Ia~~A~e~I~dGdvILTyg~SS--------tV~~vL~~A~e~Gk~Fr  553 (717)
                      .   ..+.+++++.+++.+++|+ +++..+++.|++++.++|+||++|||||+|+        +++++|+.|+++|++|+
T Consensus       106 ~---~~s~~~~k~~ll~~a~~i~-~e~~~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~gta~~~i~~a~~~gk~~~  181 (340)
T d1t5oa_         106 K---GESVEEVKELALREAEKLA-EEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIR  181 (340)
T ss_dssp             T---CSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCE
T ss_pred             c---ccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCEEEEecCCchhhhhhhhhHHHHHHHhhhCCccce
Confidence            4   3578999999999999988 5667799999999999999999999999996        68999999999999999


Q ss_pred             EEEcCCCCchhH-HHHHHHHHhCCCcEEEEcchHHHHHhhh--ccEEEEceeeEecCCCeecccchHHHHHHHHhCCCcE
Q psy17541        554 VIIVDGSPWYEG-KEMLRRLVKHQVDCSYVLLSAVSYIMRE--VSKVIIGAHALLSNGAVMSRAGTAQVSLVARAFNVPV  630 (717)
Q Consensus       554 VIVvESRP~~EG-r~lA~~L~~~GI~vTyI~DSAVsyiM~~--VdkVLLGAdaVlaNG~VvNKiGT~~VALaAK~~~VPV  630 (717)
                      |||+||||++|| ++++++|.+.||+||||+|||++|+|++  ||+||+|||+|++|| ++||+|||++|++||+|+|||
T Consensus       182 V~v~EsrP~~qG~rl~a~~L~~~gi~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG-~~nkiGT~~~A~~Ak~~~vP~  260 (340)
T d1t5oa_         182 VIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPF  260 (340)
T ss_dssp             EEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHHHHHHHTTCCE
T ss_pred             EEEEeccCccCchHHHHHHHHhcCCCcEEEechhHHHHhhccccceEeechheeehhc-ccccccHHHHHHHHHHhCCcE
Confidence            999999999999 7899999999999999999999999997  999999999999998 999999999999999999999


Q ss_pred             EecccCCcccccccCCcccccccCCccccccccccccccccCCCccccccceeccCCCCccEEEeCCCCcCC---CChhH
Q psy17541        631 LAACETHKFCERVQTDALVFNELGDPNELISDKSAAKNWKSLAHLTPLSLTYDITPSHLVTAVITELAIVPC---TSVPV  707 (717)
Q Consensus       631 yV~cEtyKFs~rv~~Ds~v~NEl~dP~EL~~~~~~l~~~~~~~~l~vlNp~FDvTPPeLIT~IITE~GIlpP---sSVpv  707 (717)
                      |||||+|||+.....++ +.+|.++++++...++.   ...+++++++||+||||||+|||+||||.|+++|   .+||+
T Consensus       261 ~V~~~~~k~~~~~~~~~-i~ie~~~~~e~~~~~~~---~~~~~~~~v~np~fD~tP~~lI~~iiTe~Gi~~P~~~~~~~~  336 (340)
T d1t5oa_         261 YVAAPKATFDWERTAKD-VVIEERPREELIFCGKR---QIAPLNVKVYNPAFDPTPLENVTALITEYGVIYPPYEVNVPK  336 (340)
T ss_dssp             EEECCGGGBCTTCCGGG-CCCCBCCTHHHHEETTE---ECSCTTCEECCBSEEEEEGGGCSEEEETTEEECSCHHHHHHH
T ss_pred             EEEeccccccccCCccc-cccccCCHHHhcccCCe---eecCCCCCeeCcCccCCCHHHCCEEECCCCccCCCccccHHH
Confidence            99999999987765554 55788999998875431   2245789999999999999999999999999977   58999


Q ss_pred             Hhhc
Q psy17541        708 VLRV  711 (717)
Q Consensus       708 VLR~  711 (717)
                      |||.
T Consensus       337 ~l~~  340 (340)
T d1t5oa_         337 VLKF  340 (340)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            9983
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure