Psyllid ID: psy17549

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MKLIITRTSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIGIL
cEEEEEEcccHHHccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccEEEcccHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccEEEEccccccccccccccccEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHccEEccccccccccccccccEEEEEEEEccccccccEEEEEEEcccccccc
cEEEEEEcccEccccccEcccccccccccccccccccEEEEccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHEEEccccccccEEEEccccHHHHHcccccHHHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccEEEEEEEEEccccccccccccccEEEEEccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEccccHHHHHHHHHccEEEcccccccHHHHccccEEEEEEEcccccccccEEEEEEEccccEEEc
mkliitrtsrfhtyggqilptiptkptlqilpkffdscftfqvslnpvrilKHEAEEEKSEIARMSSFIGAIAIGDlvkstlgpkgmDKILVSMGRnsgqveitndGATILksvgvdnpaAKILVDMskvqddevgdgTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASidnglnseKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKkggcledsfldegflldkkigqhqpkrIENAKLLiantpmdtdkikvfgsrvrVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLiynypeqlfadAGVMAIEHADFDGIERLALVTggeivstfdnpdqvklgkcdliEEVCLwtknvtgptvstysisgfrYIGIL
mkliitrtsrfhtyggqilptipTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEklidqrlhpqtiiagwRRATDIARKALREasidnglnsekFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAklliantpmdtdkikvfgsrvrvdSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIvstfdnpdqvklgKCDLIEEVClwtknvtgptvstysisgfryigil
MKLIITRTSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSmakiaelelaekekmkDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIGIL
**LIITRTSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKH********IARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELEL********KVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIGI*
*******TSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRIL**************SSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIG*L
MKLIITRTSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIGIL
MKLIITRTSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIGIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLIITRTSRFHTYGGQILPTIPTKPTLQILPKFFDSCFTFQVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMxxxxxxxxxxxxxxxxxxxxxLKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTVSTYSISGFRYIGIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query418 2.2.26 [Sep-21-2011]
P47207 529 T-complex protein 1 subun yes N/A 0.825 0.652 0.736 1e-147
Q3ZBH0 535 T-complex protein 1 subun yes N/A 0.839 0.656 0.747 1e-146
Q4R6F8 535 T-complex protein 1 subun N/A N/A 0.839 0.656 0.747 1e-146
P78371 535 T-complex protein 1 subun yes N/A 0.839 0.656 0.747 1e-146
Q5XIM9 535 T-complex protein 1 subun yes N/A 0.839 0.656 0.744 1e-145
P80314 535 T-complex protein 1 subun yes N/A 0.839 0.656 0.738 1e-144
Q10147 527 Probable T-complex protei yes N/A 0.837 0.664 0.684 1e-135
Q54ES9 532 T-complex protein 1 subun yes N/A 0.846 0.665 0.647 1e-130
P39076 527 T-complex protein 1 subun yes N/A 0.825 0.654 0.663 1e-129
Q8SQP2 508 T-complex protein 1 subun yes N/A 0.758 0.624 0.483 1e-75
>sp|P47207|TCPB_CAEEL T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=1 SV=2 Back     alignment and function desciption
 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/349 (73%), Positives = 305/349 (87%), Gaps = 4/349 (1%)

Query: 47  PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMG-RNSGQVEITN 105
           PV+ILK  A+EE+ E AR+SSF+GAIAIGDLVKSTLGPKGMDKIL+S    ++G +++TN
Sbjct: 3   PVQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTN 62

Query: 106 DGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQT 165
           DGATILKS+GVDNPAAK+LVDMS  QD EVGDGTTSVTVLA+ELLK AEKL++QR+HPQT
Sbjct: 63  DGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQT 122

Query: 166 IIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVD 225
           II+G+RRA  IA+++L+++SI++G N    R+DLL IARTTL SKILSQHKE+F++LAVD
Sbjct: 123 IISGYRRALGIAQESLKKSSIESGDN---IRDDLLKIARTTLGSKILSQHKEHFAQLAVD 179

Query: 226 AVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMD 285
           AVLRLKGSGNL AIQIIKK GG + +S+LDEGFLL+K  G  QP+R+E AK+LIANTPMD
Sbjct: 180 AVLRLKGSGNLDAIQIIKKLGGSMNESYLDEGFLLEKLPGMFQPRRVEKAKILIANTPMD 239

Query: 286 TDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFA 345
           TDK+KVFGSRVRVD +AK+AELE AEK KMK+KV+KIL HN NVFINRQLIYNYPEQLFA
Sbjct: 240 TDKVKVFGSRVRVDGVAKVAELEAAEKLKMKEKVDKILAHNCNVFINRQLIYNYPEQLFA 299

Query: 346 DAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCL 394
           DA VMAIEHADF+GIERLALV GGEIVSTFD+P   + G CDLIEE+ +
Sbjct: 300 DAKVMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEEIMI 348
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Caenorhabditis elegans (taxid: 6239)
>sp|Q3ZBH0|TCPB_BOVIN T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=1 SV=3 Back     alignment and function description
>sp|Q4R6F8|TCPB_MACFA T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3 Back     alignment and function description
>sp|P78371|TCPB_HUMAN T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4 Back     alignment and function description
>sp|Q5XIM9|TCPB_RAT T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3 Back     alignment and function description
>sp|P80314|TCPB_MOUSE T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4 Back     alignment and function description
>sp|Q10147|TCPB_SCHPO Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct2 PE=3 SV=1 Back     alignment and function description
>sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1 Back     alignment and function description
>sp|P39076|TCPB_YEAST T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8SQP2|TCPB_ENCCU T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi (strain GB-M1) GN=CCT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
91078026 534 PREDICTED: similar to AGAP009694-PA [Tri 0.842 0.659 0.883 1e-175
158298574 544 AGAP009694-PA [Anopheles gambiae str. PE 0.842 0.647 0.835 1e-173
307180248 528 T-complex protein 1 subunit beta [Campon 0.842 0.666 0.838 1e-171
312371441 534 hypothetical protein AND_22097 [Anophele 0.842 0.659 0.818 1e-170
289740483 535 chaperonin complex component TcP-1 beta 0.846 0.661 0.819 1e-169
332373722 536 unknown [Dendroctonus ponderosae] 0.842 0.656 0.829 1e-169
242017879 534 T-complex protein 1 subunit beta, putati 0.842 0.659 0.812 1e-168
326495874 536 predicted protein [Hordeum vulgare subsp 0.834 0.651 0.820 1e-167
66533395 534 PREDICTED: t-complex protein 1 subunit b 0.842 0.659 0.832 1e-166
193599182 536 PREDICTED: t-complex protein 1 subunit b 0.834 0.651 0.820 1e-166
>gi|91078026|ref|XP_970646.1| PREDICTED: similar to AGAP009694-PA [Tribolium castaneum] gi|270001410|gb|EEZ97857.1| hypothetical protein TcasGA2_TC000229 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/352 (88%), Positives = 336/352 (95%)

Query: 43  VSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVE 102
           VSLNPVR+LKHEAEEEK+EIAR+SSF+GAIAIGDLVKSTLGPKGMDKILVS GRN+GQVE
Sbjct: 2   VSLNPVRVLKHEAEEEKAEIARLSSFVGAIAIGDLVKSTLGPKGMDKILVSSGRNAGQVE 61

Query: 103 ITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLH 162
           +TNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLK AEKLIDQ++H
Sbjct: 62  VTNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKEAEKLIDQKIH 121

Query: 163 PQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKL 222
           PQTIIAGWR+A D+ARKAL +AS DN  NSEKFREDL+NIARTTLSSKILSQHKE+F+KL
Sbjct: 122 PQTIIAGWRKAVDVARKALLDASADNSSNSEKFREDLMNIARTTLSSKILSQHKEHFAKL 181

Query: 223 AVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANT 282
           AVDAV+RLKGSG+L AIQ+IKK GG LE+SFLDEGFLLDKK G HQPKR+ENA++LIANT
Sbjct: 182 AVDAVMRLKGSGDLQAIQLIKKSGGTLEESFLDEGFLLDKKPGVHQPKRVENARILIANT 241

Query: 283 PMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQ 342
           PMDTDKIKVFGS ++VDSMAKIAELELAEKEKMKDKV KILKHNANVFINRQLIYNYPEQ
Sbjct: 242 PMDTDKIKVFGSHIKVDSMAKIAELELAEKEKMKDKVNKILKHNANVFINRQLIYNYPEQ 301

Query: 343 LFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCL 394
           LFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPD VKLGKCDLIE+V +
Sbjct: 302 LFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDLVKLGKCDLIEQVMI 353

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158298574|ref|XP_318752.4| AGAP009694-PA [Anopheles gambiae str. PEST] gi|157013949|gb|EAA14559.4| AGAP009694-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307180248|gb|EFN68281.1| T-complex protein 1 subunit beta [Camponotus floridanus] Back     alignment and taxonomy information
>gi|312371441|gb|EFR19629.1| hypothetical protein AND_22097 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|289740483|gb|ADD18989.1| chaperonin complex component TcP-1 beta subunit CCT2 [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|332373722|gb|AEE62002.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|242017879|ref|XP_002429412.1| T-complex protein 1 subunit beta, putative [Pediculus humanus corporis] gi|212514336|gb|EEB16674.1| T-complex protein 1 subunit beta, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|326495874|dbj|BAJ90559.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|66533395|ref|XP_393300.2| PREDICTED: t-complex protein 1 subunit beta-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|193599182|ref|XP_001946187.1| PREDICTED: t-complex protein 1 subunit beta-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
FB|FBgn0030086 535 CG7033 [Drosophila melanogaste 0.844 0.659 0.742 1.7e-137
UNIPROTKB|Q5F424 535 CCT2 "Uncharacterized protein" 0.839 0.656 0.727 2.2e-130
ZFIN|ZDB-GENE-020419-6 535 cct2 "chaperonin containing TC 0.839 0.656 0.721 2.2e-130
UNIPROTKB|D0G0C8 535 CCT2 "Chaperonin containing TC 0.839 0.656 0.713 6.6e-129
UNIPROTKB|Q3ZBH0 535 CCT2 "T-complex protein 1 subu 0.839 0.656 0.713 8.4e-129
UNIPROTKB|B6V9S9 535 CCT2 "Uncharacterized protein" 0.839 0.656 0.715 8.4e-129
UNIPROTKB|F5GWF6 530 CCT2 "T-complex protein 1 subu 0.839 0.662 0.713 1.1e-128
UNIPROTKB|F8VQ14416 CCT2 "T-complex protein 1 subu 0.839 0.843 0.713 1.1e-128
UNIPROTKB|P78371 535 CCT2 "T-complex protein 1 subu 0.839 0.656 0.713 1.1e-128
UNIPROTKB|E2QSH7 535 CCT2 "Uncharacterized protein" 0.839 0.656 0.710 2.2e-128
FB|FBgn0030086 CG7033 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
 Identities = 262/353 (74%), Positives = 306/353 (86%)

Query:    42 QVSLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQV 101
             ++SLNPVR+LK+EA+EEK+E+AR+SSFIGAIAIGDLVKSTLGPKGMDKILV+ GRN+G V
Sbjct:     2 EMSLNPVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKILVATGRNAGHV 61

Query:   102 EITNDGATILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRL 161
             E+TNDGATIL++VGVDNPAAKILVDMS+VQD+EVGDGTTSVTVLASELL+ AEKL++Q+L
Sbjct:    62 EVTNDGATILRAVGVDNPAAKILVDMSRVQDEEVGDGTTSVTVLASELLREAEKLVEQKL 121

Query:   162 HPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSK 221
             HPQ I++GWR+AT +A +AL  A+ DN  + EKFR DLLNIARTTLSSKIL QHK++F+ 
Sbjct:   122 HPQIIVSGWRQATQVALEALTAAAQDNSSSDEKFRNDLLNIARTTLSSKILHQHKDFFAN 181

Query:   222 LAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIAN 281
             LAVDAV+RLKGSG L +IQIIKK GG L DSFLDEGFLLDKK G HQP+RIENA++LIAN
Sbjct:   182 LAVDAVMRLKGSGELKSIQIIKKSGGTLGDSFLDEGFLLDKKPGVHQPQRIENARILIAN 241

Query:   282 TPMDTDKIKVFGSRVRVDSXXXXXXXXXXXXXXXXDKVEKILKHNANVFINRQLIYNYPE 341
             TPMDTDKIKVFGS ++VDS                +KV+KILKH  NVFINRQLIYNYPE
Sbjct:   242 TPMDTDKIKVFGSSIKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYPE 301

Query:   342 QLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCL 394
             QLFADA VM+IEHADFDGIERLA  TGGEIVSTF+NP  VKLG+CD+IE+V +
Sbjct:   302 QLFADARVMSIEHADFDGIERLAYCTGGEIVSTFENPSLVKLGECDVIEQVMI 354
GO:0005832 "chaperonin-containing T-complex" evidence=ISS
GO:0006457 "protein folding" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0031122 "cytoplasmic microtubule organization" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
GO:0072686 "mitotic spindle" evidence=IDA
GO:0022008 "neurogenesis" evidence=IMP
UNIPROTKB|Q5F424 CCT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-6 cct2 "chaperonin containing TCP1, subunit 2 (beta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|D0G0C8 CCT2 "Chaperonin containing TCP1, subunit 2 (Beta)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBH0 CCT2 "T-complex protein 1 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S9 CCT2 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|F5GWF6 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8VQ14 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P78371 CCT2 "T-complex protein 1 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSH7 CCT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T4THSB_SULACNo assigned EC number0.33520.80860.6112yesN/A
P48425THSB_THEACNo assigned EC number0.33700.83250.6408yesN/A
Q10147TCPB_SCHPONo assigned EC number0.68460.83730.6641yesN/A
P47207TCPB_CAEELNo assigned EC number0.73630.82530.6521yesN/A
Q54ES9TCPB_DICDINo assigned EC number0.64780.84680.6654yesN/A
Q3ZBH0TCPB_BOVINNo assigned EC number0.74710.83970.6560yesN/A
P78371TCPB_HUMANNo assigned EC number0.74710.83970.6560yesN/A
Q9V2S9THSA_SULSONo assigned EC number0.35470.81570.6100yesN/A
Q8SQP2TCPB_ENCCUNo assigned EC number0.48360.75830.6240yesN/A
P80314TCPB_MOUSENo assigned EC number0.73860.83970.6560yesN/A
O57762THS_PYRHONo assigned EC number0.33970.83970.6393yesN/A
O28821THSB_ARCFUNo assigned EC number0.35120.81100.6220yesN/A
Q9YDK6THSA_AERPENo assigned EC number0.36330.80860.6101yesN/A
P61111THSA_PYRKONo assigned EC number0.35610.83970.6405yesN/A
Q5XIM9TCPB_RATNo assigned EC number0.74430.83970.6560yesN/A
Q4R6F8TCPB_MACFANo assigned EC number0.74710.83970.6560N/AN/A
P39076TCPB_YEASTNo assigned EC number0.66370.82530.6546yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.0
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 0.0
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.0
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 1e-113
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 2e-98
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-86
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 4e-84
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 2e-81
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-78
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 4e-77
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 3e-74
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 4e-73
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-72
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-65
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-65
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-61
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-46
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 9e-46
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 8e-43
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 9e-42
cd03341 472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 2e-39
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 4e-36
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 1e-32
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 3e-15
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 3e-12
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-11
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 4e-11
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-10
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 2e-09
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 5e-09
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 9e-09
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 3e-08
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 6e-08
CHL00093 529 CHL00093, groEL, chaperonin GroEL 2e-06
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 2e-05
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information 
 Score =  659 bits (1701), Expect = 0.0
 Identities = 269/343 (78%), Positives = 309/343 (90%), Gaps = 1/343 (0%)

Query: 50  ILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGAT 109
           ILK  A+EEK E AR+SSF+GAIAIGDLVK+TLGPKGMDKIL S+GR SG V +TNDGAT
Sbjct: 1   ILKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGR-SGGVTVTNDGAT 59

Query: 110 ILKSVGVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAG 169
           ILKS+GVDNPAAK+LVD+SKVQDDEVGDGTTSVTVLA+ELL+ AEKL+ Q++HPQTII G
Sbjct: 60  ILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEG 119

Query: 170 WRRATDIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLR 229
           +R AT  AR+AL  +++D+  + E FREDLLNIARTTLSSKIL+Q KE+F++LAVDAVLR
Sbjct: 120 YRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLR 179

Query: 230 LKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKI 289
           LKGSGNL AIQIIKK GG L+DS+LDEGFLLDKKIG +QPKRIENAK+LIANTPMDTDKI
Sbjct: 180 LKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKI 239

Query: 290 KVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGV 349
           K+FG++VRVDS AK+AE+E AEKEKMK+KVEKILKH  N FINRQLIYNYPEQLFADAG+
Sbjct: 240 KIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGI 299

Query: 350 MAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
           MAIEHADFDG+ERLALVTGGEI STFD+P+ VKLG C LIEE+
Sbjct: 300 MAIEHADFDGVERLALVTGGEIASTFDHPELVKLGTCKLIEEI 342

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 418
KOG0361|consensus 543 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
KOG0363|consensus 527 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
KOG0358|consensus 534 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0362|consensus 537 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0360|consensus 545 100.0
KOG0364|consensus 527 100.0
KOG0359|consensus 520 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
KOG0357|consensus 400 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.98
KOG0356|consensus 550 99.96
KOG0230|consensus 1598 99.82
>KOG0361|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.1e-77  Score=570.64  Aligned_cols=362  Identities=35%  Similarity=0.530  Sum_probs=346.6

Q ss_pred             chhhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHHHHH
Q psy17549         47 PVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKILVD  126 (418)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akll~~  126 (418)
                      |..++|+|++.++|.-+..+|+.||..+++.++|||||+||||+|++..   |+++|||||+||||-|++.||+||.+++
T Consensus         5 ~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~---g~~tIsNDGATIlKlldivhPaaktlVd   81 (543)
T KOG0361|consen    5 PIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSK---GKTTISNDGATILKLLDIVHPAAKTLVD   81 (543)
T ss_pred             CEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCC---CcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence            4567899999999999999999999999999999999999999999984   9999999999999999999999999999


Q ss_pred             hhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCC-chhhHHHHHHHHHh
Q psy17549        127 MSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLN-SEKFREDLLNIART  205 (418)
Q Consensus       127 ~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~-~~~~~~~L~~ia~t  205 (418)
                      .+++||.++|||||||++|++|+|+++..+++.|+||+.|+++|++|...|++.++++++.++.. ....++.|+++|.|
T Consensus        82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T  161 (543)
T KOG0361|consen   82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT  161 (543)
T ss_pred             HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988743 23457889999999


Q ss_pred             hccccccchhhHHHHHHHHHHHHHhhccCCCcceEEEEccCCCcccceeeeeEEEeccCCC----CCcceecCceEEEee
Q psy17549        206 TLSSKILSQHKEYFSKLAVDAVLRLKGSGNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ----HQPKRIENAKLLIAN  281 (418)
Q Consensus       206 sl~sK~~~~~~~~ls~lvv~Av~~v~~~~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~----~~~~~i~n~kIlll~  281 (418)
                      +++||+..++.++|+++++||+..++...++++|-|.|++||+++||.+++|+.|++.|++    .+|+++.||||+++|
T Consensus       162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~Ln  241 (543)
T KOG0361|consen  162 ALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN  241 (543)
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEe
Confidence            9999999999999999999999999877788999999999999999999999999999986    589999999999999


Q ss_pred             cccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCCHHHHH
Q psy17549        282 TPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHADFDGIE  361 (418)
Q Consensus       282 ~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~  361 (418)
                      .+||.+..+.+ +++++.++++++.+.++||+.+.+++++|++.|+|||++...|.|+|.|||++++|.|..||+.+||.
T Consensus       242 vELElKaEkdN-AEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~  320 (543)
T KOG0361|consen  242 VELELKAEKDN-AEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN  320 (543)
T ss_pred             eeeeecccccC-ceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence            99999777664 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCC
Q psy17549        362 RLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGF  412 (418)
Q Consensus       362 ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~  412 (418)
                      |+..+||++++++.+++.++.||.|+.|||+++|+++|.+|+|      ||++|||+
T Consensus       321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGg  377 (543)
T KOG0361|consen  321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGG  377 (543)
T ss_pred             HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEecc
Confidence            9999999999999999999999999999999999999999996      69999996

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0356|consensus Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-140
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-122
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 7e-49
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-49
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 6e-48
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 1e-47
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-47
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 7e-47
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-46
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 2e-45
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-44
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 7e-43
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 8e-43
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-42
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 2e-42
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 2e-42
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-41
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 3e-41
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 3e-41
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 3e-41
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 5e-41
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-41
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-38
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 2e-35
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-34
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-31
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-30
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-27
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-25
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-17
3iyg_Q 512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-11
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 3e-09
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 3e-08
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 4e-08
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 8e-08
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 9e-08
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 9e-08
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 9e-08
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 9e-08
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 9e-08
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 9e-08
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 2e-07
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-07
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 2e-07
1ss8_A 524 Groel Length = 524 2e-07
1oel_A 547 Conformational Variability In The Refined Structure 2e-07
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 2e-07
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-07
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 9e-07
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 5e-06
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 8e-05
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  493 bits (1269), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/340 (72%), Positives = 288/340 (84%), Gaps = 1/340 (0%)
Query: 55  AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV 114
           A+EE++E AR+SSFIGAIAIGDLVKSTLGPKGMDKIL+S GR++  + +TNDGATILK++
Sbjct: 3   ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDA-SLMVTNDGATILKNI 61
Query: 115 GVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
           GVDNPAAK+LVDMS+VQDDEVGDGTTSVTVLA+ELL+ AE LI +++HPQTIIAGWR AT
Sbjct: 62  GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121
Query: 175 DIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG 234
             AR+AL  +++D+G +  KFR+DL+NIA TTLSSK+L+ HK++F+KLAV+AVLRLKGSG
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181
Query: 235 NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGS 294
           NL AI +IKK GG L DS+LDEGFLLDKKIG +QPKRIENAK+LIANT MDTDKIK+FGS
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGS 241
Query: 295 RVRVDSXXXXXXXXXXXXXXXXDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEH 354
           RVRVDS                +KVE+ILKH  N FINRQLIYNYPEQLF  AGVMAIEH
Sbjct: 242 RVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEH 301
Query: 355 ADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCL 394
           ADF G+ERLALVTGGEI STFD+P+ VKLG C LIEEV +
Sbjct: 302 ADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMI 341
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-178
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-176
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-167
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-165
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-160
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-158
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-158
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-158
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 1e-158
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-157
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-154
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-152
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 1e-152
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 1e-151
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-135
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-132
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-121
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-117
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-114
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-106
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-103
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-101
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 2e-26
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 7e-26
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 2e-09
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 2e-09
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 4e-09
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
 Score =  506 bits (1305), Expect = e-178
 Identities = 257/338 (76%), Positives = 300/338 (88%), Gaps = 1/338 (0%)

Query: 55  AEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSV 114
           A+EE++E AR+SSFIGAIAIGDLVKSTLGPKGMDKIL+S GR+   + +TNDGATILK++
Sbjct: 3   ADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRD-ASLMVTNDGATILKNI 61

Query: 115 GVDNPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRAT 174
           GVDNPAAK+LVDMS+VQDDEVGDGTTSVTVLA+ELL+ AE LI +++HPQTIIAGWR AT
Sbjct: 62  GVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREAT 121

Query: 175 DIARKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHKEYFSKLAVDAVLRLKGSG 234
             AR+AL  +++D+G +  KFR+DL+NIA TTLSSK+L+ HK++F+KLAV+AVLRLKGSG
Sbjct: 122 KAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLKGSG 181

Query: 235 NLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQHQPKRIENAKLLIANTPMDTDKIKVFGS 294
           NL AI +IKK GG L DS+LDEGFLLDKKIG +QPKRIENAK+LIANT MDTDKIK+FGS
Sbjct: 182 NLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGS 241

Query: 295 RVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEH 354
           RVRVDS AK+AE+E AEKEKMK+KVE+ILKH  N FINRQLIYNYPEQLF  AGVMAIEH
Sbjct: 242 RVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEH 301

Query: 355 ADFDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEV 392
           ADF G+ERLALVTGGEI STFD+P+ VKLG C LIEEV
Sbjct: 302 ADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEV 339
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 98.75
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 98.73
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 98.67
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
Probab=100.00  E-value=1.6e-79  Score=644.30  Aligned_cols=363  Identities=34%  Similarity=0.517  Sum_probs=334.4

Q ss_pred             cCcchhhccchhhhhhhHHHHHHHHHHHHHHHHhhhhccCcccccccccccccCCCCeEEccCHHHHHHhccccChHHHH
Q psy17549         44 SLNPVRILKHEAEEEKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVDNPAAKI  123 (418)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~la~~v~sslGP~G~~Kmi~~~~~~~g~v~iTnDG~tIl~~l~~~hP~akl  123 (418)
                      ..+|..+++++++.++|.+|+.+|+.||+.||++++|||||+||+|||+++   .|+++|||||+|||++|+++||+|||
T Consensus        12 ~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~---~G~~~iTnDG~tIlk~i~v~hP~Akl   88 (553)
T 3ko1_A           12 EGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDS---LGDITITNDGATILDKMDLQHPAAKL   88 (553)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECT---TSCEEEECCHHHHHHSSCCCSHHHHH
T ss_pred             CCCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhh---ccceEEecCccchhhhhhccChhHHH
Confidence            346888999999999999999999999999999999999999999999999   59999999999999999999999999


Q ss_pred             HHHhhhhccccccCCceehHhHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHH
Q psy17549        124 LVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIARKALREASIDNGLNSEKFREDLLNIA  203 (418)
Q Consensus       124 l~~~~~~~~~~~GDGttt~viLa~~Ll~~a~~li~~Gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~L~~ia  203 (418)
                      ++++|++||+++||||||++|||++||++|.+++.+|+||+.|++||++|++.++++|++++++++.+   +++.|.++|
T Consensus        89 l~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~---d~e~L~~vA  165 (553)
T 3ko1_A           89 LVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSIN---DTDLLRKIA  165 (553)
T ss_dssp             HHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTT---CHHHHHHHH
T ss_pred             HHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCC---cHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998643   268999999


Q ss_pred             HhhccccccchhhHHHHHHHHHHHHHhhcc------CCCcceEEEEccCCCcccceeeeeEEEeccCCC-CCcceecCce
Q psy17549        204 RTTLSSKILSQHKEYFSKLAVDAVLRLKGS------GNLSAIQIIKKKGGCLEDSFLDEGFLLDKKIGQ-HQPKRIENAK  276 (418)
Q Consensus       204 ~tsl~sK~~~~~~~~ls~lvv~Av~~v~~~------~~~~~I~I~ki~Ggs~~dS~lv~Givl~~~~~~-~~~~~i~n~k  276 (418)
                      +|+++||+.++++++|++|++||+.+++++      +|+++|+|+++.||++++|++++|++|++++.+ +||++++|||
T Consensus       166 ~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~k  245 (553)
T 3ko1_A          166 MTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAK  245 (553)
T ss_dssp             HHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCE
T ss_pred             HHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccce
Confidence            999999999999999999999999999753      678899999999999999999999999999974 7999999999


Q ss_pred             EEEeecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceEEEeccccccchHHHHHHcCceEEecCC
Q psy17549        277 LLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANVFINRQLIYNYPEQLFADAGVMAIEHAD  356 (418)
Q Consensus       277 Illl~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~vVl~~~~I~d~a~~~l~~~gI~vv~~v~  356 (418)
                      |++++++|++++++.+ +++.+++++++.++.++|+++++.++++|.+.|+|||+++++|++.+++||.++||+++++++
T Consensus       246 Ill~d~~Le~~k~e~~-~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~  324 (553)
T 3ko1_A          246 IALIDASLEVEKPELD-AEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAK  324 (553)
T ss_dssp             EEEECSCBSCCCCTTT-CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCC
T ss_pred             EEEecCcccccCcccC-ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhh
Confidence            9999999999999985 889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCeeccccCCCCCCCceeeeeEEEEEECceeEEEEee------eeEEEeCCC
Q psy17549        357 FDGIERLALVTGGEIVSTFDNPDQVKLGKCDLIEEVCLWTKNVTGPTV------STYSISGFR  413 (418)
Q Consensus       357 ~~~L~ria~~tGa~iv~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~~------~t~~l~g~~  413 (418)
                      +++|+|||++|||+++++++++++++||+|+.|++.++|+++|+||++      ||++|||.+
T Consensus       325 k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~~~~~TI~lrG~t  387 (553)
T 3ko1_A          325 KSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSISILIRGGL  387 (553)
T ss_dssp             HHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSSSSCEEEEECCSS
T ss_pred             hhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCCCceEEEeeeccH
Confidence            999999999999999999999999999999999999999999999996      599999965
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 418
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-34
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-31
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 3e-30
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-30
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 3e-29
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 1e-28
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 8e-25
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 8e-23
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 2e-19
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 4e-19
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 5e-19
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 5e-17
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-16
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 5e-13
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score =  125 bits (315), Expect = 3e-34
 Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 6/208 (2%)

Query: 58  EKSEIARMSSFIGAIAIGDLVKSTLGPKGMDKILVSMGRNSGQVEITNDGATILKSVGVD 117
           E+ + A+ ++   A AI D V++TLGPKGMDK+LV    + G + I+NDGATILK + V+
Sbjct: 2   EQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVD---SIGDIIISNDGATILKEMDVE 58

Query: 118 NPAAKILVDMSKVQDDEVGDGTTSVTVLASELLKNAEKLIDQRLHPQTIIAGWRRATDIA 177
           +P AK++V++SK QD  VGDGTT+  VL+ ELLK AE L+DQ +HP  I  G+R A + A
Sbjct: 59  HPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEA 118

Query: 178 RKALREASIDNGLNSEKFREDLLNIARTTLSSKILSQHK---EYFSKLAVDAVLRLKGSG 234
           RK + E +  + L      E  L +     ++ +  + +   E F+K        L  + 
Sbjct: 119 RKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENA 178

Query: 235 NLSAIQIIKKKGGCLEDSFLDEGFLLDK 262
            +  I  + K     E   +  G  LD 
Sbjct: 179 GIDPINTLIKLKADDEKGRISVGVDLDN 206
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.94
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.92
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.89
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.62
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.61
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.54
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.42
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 98.74
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 98.73
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 98.65
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 98.57
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 95.94
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 94.96
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 90.37
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.48
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=100.00  E-value=2.3e-35  Score=262.46  Aligned_cols=160  Identities=19%  Similarity=0.278  Sum_probs=140.8

Q ss_pred             cceeeeeEEEeccCCC-CCcceecCceEEEeecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHccCceE
Q psy17549        251 DSFLDEGFLLDKKIGQ-HQPKRIENAKLLIANTPMDTDKIKVFGSRVRVDSMAKIAELELAEKEKMKDKVEKILKHNANV  329 (418)
Q Consensus       251 dS~lv~Givl~~~~~~-~~~~~i~n~kIlll~~~Le~~k~e~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~I~~~gv~v  329 (418)
                      ||++++|+++++.+++ +||+.++||||++++++|++++++.+ +++.+++++++..+.++|++++++++++|.+.|+||
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~-~~i~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~v   79 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ-TDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDV   79 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC---------------CHHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccc-cceecCCHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            7999999999999875 79999999999999999999999884 889999999999999999999999999999999999


Q ss_pred             EEeccccccchHHHHHHcCceEEecCCHHHHHHHHHHhCCeeccccCCCCCCCcee-eeeEEEEEECceeEEEEee----
Q psy17549        330 FINRQLIYNYPEQLFADAGVMAIEHADFDGIERLALVTGGEIVSTFDNPDQVKLGK-CDLIEEVCLWTKNVTGPTV----  404 (418)
Q Consensus       330 Vl~~~~I~d~a~~~l~~~gI~vv~~v~~~~L~ria~~tGa~iv~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~----  404 (418)
                      |+|+++|+|.+++||.++||++++|+++++|+|||++|||++++++++++++++|+ |+.++++.+|+++|++|++    
T Consensus        80 v~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~  159 (168)
T d1gmla_          80 VITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDP  159 (168)
T ss_dssp             EEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESST
T ss_pred             EEEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECCeEEEEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999998 6778889999999999985    


Q ss_pred             --eeEEEeC
Q psy17549        405 --STYSISG  411 (418)
Q Consensus       405 --~t~~l~g  411 (418)
                        |||+|||
T Consensus       160 ~~~TIllRG  168 (168)
T d1gmla_         160 KACTILLRG  168 (168)
T ss_dssp             TSCEEEEEC
T ss_pred             CEEEEEEeC
Confidence              5999999
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure