Psyllid ID: psy17567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccEEccEEccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccHHHHHHHHHHEHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mrkrrggagekkKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKektltedsqcdtmipvfkkgvlykgiycpsltnsfrepslemSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEvelsqidstkLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQgfisqgiglnnkEYLIWYILFIVFVTYamlplplkwcfiggctTSVLHVIITAQIklhrgplspcsvheMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM
Flexible Loop (DISEMBL)
mrkrrggagekkkriekrnkeeekeeneqeekekedveeeknkkkkkkkkkkkkkkkkkkkkkeeqsvkeieeslkerkektltedsqcdtmipvFKKGVLYKGIYCpsltnsfrepSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISynevelsqidsTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLEThrstetrmktqkendqqeklllsgm
Low Complexity Region (SEG)
MrkrrggagekkkriekrnkeeekeeneqeekekedveeeknkkkkkkkkkkkkkkkkkkkkkeeqsvkeieesLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM
Disordered region (IsUnstruct)
****************************************************************************************CDTMIPVFKKGVLYKGIYCPSLTNSFR*******YQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQ********************************
Disordered Region (DISOPRED)
*********************************************************************************************PVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRST*************EKLLLSGM
Disordered Region (DISEMBL)
**************************************************************************************SQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRS**************EKLLLSGM
Disordered Region (DISPRO)
*******************************************************************V**************************VFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKRRGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
P40145	1251	Adenylate cyclase type 8	yes	N/A	0.632	0.183	0.333	2e-29
P40146	1248	Adenylate cyclase type 8	yes	N/A	0.632	0.183	0.333	9e-29
P97490	1249	Adenylate cyclase type 8	yes	N/A	0.632	0.183	0.333	2e-28
P32870	2248	Ca(2+)/calmodulin-respons	no	N/A	0.632	0.101	0.267	2e-14
Q08828	1119	Adenylate cyclase type 1	no	N/A	0.295	0.095	0.327	9e-14
O88444	1118	Adenylate cyclase type 1	no	N/A	0.323	0.104	0.316	2e-13
P19754	1134	Adenylate cyclase type 1	no	N/A	0.295	0.094	0.318	3e-13
Q01341	1165	Adenylate cyclase type 6	no	N/A	0.292	0.090	0.336	4e-12
Q03343	1166	Adenylate cyclase type 6	no	N/A	0.292	0.090	0.336	9e-12
Q04400	1262	Adenylate cyclase type 5	no	N/A	0.292	0.083	0.318	1e-11

>sp|P40145|ADCY8_HUMAN Adenylate cyclase type 8 OS=Homo sapiens GN=ADCY8 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 146/264 (55%), Gaps = 35/264 (13%)

Query: 99  GVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNE 158
           G  Y+G+  P+L NSF+   LE  YQRY   QR+KS +++N++D++ K  L V  +S   
Sbjct: 146 GYSYRGVIFPTLRNSFKSRDLERLYQRYFLGQRRKSEVVMNVLDVLTKLTLLVLHLSLAS 205

Query: 159 VELSQIDSTKLTWTVYTMMSNLAMCLLGWWR--CFANNYLQWAAVGTWILLNTQGWWRCF 216
             +  +    L +  +T +  + +C L   R    ++ YLQ++ V TW+ + TQ      
Sbjct: 206 APMDPLKGILLGF--FTGIE-VVICALVVVRKDTTSHTYLQYSGVVTWVAMTTQ------ 256

Query: 217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
                                ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct: 257 --------------------ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 296

Query: 277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
             TS+L VI+  Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct: 297 LGTSLLQVIL--QVVIPR--LAVISINQVVAQAVLFMCMNTAGIFISYLSDRAQRQAFLE 352

Query: 337 THRSTETRMKTQKENDQQEKLLLS 360
           T R  E R++ + EN +QE+L+LS
Sbjct: 353 TRRCVEARLRLETENQRQERLVLS 376

This is a membrane-bound, calcium-stimulable adenylyl cyclase. May be involved in learning, in memory and in drug dependence.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 6EC: .EC: 1EC: .EC: 1

>sp|P40146|ADCY8_RAT Adenylate cyclase type 8 OS=Rattus norvegicus GN=Adcy8 PE=2 SV=1

 Score =  127 bits (320), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 145/264 (54%), Gaps = 35/264 (13%)

Query: 99  GVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNE 158
           G  Y+G+  P+L NSF+   LE  YQRY   QR+KS +++N++D++ K  L V  +S   
Sbjct: 143 GYSYRGVIFPTLRNSFKSRDLERLYQRYFLGQRRKSEVVMNVLDVLTKLTLLVLHLSLAS 202

Query: 159 VELSQIDSTKLTWTVYTMMSNLAMCLLGWWR--CFANNYLQWAAVGTWILLNTQGWWRCF 216
             +  +    L +  +T +  + +C L   R    ++ YLQ++ V TW+ + TQ      
Sbjct: 203 APMDPLKGILLGF--FTGIE-VVICALVVVRKDTTSHTYLQYSGVVTWVAMTTQ------ 253

Query: 217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
                                ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct: 254 --------------------ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 293

Query: 277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
             TS+L V  T Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct: 294 LGTSLLQV--TLQVLIPR--LAVFSINQVLAQVVLFMCMNTAGIFISYLSDRAQRQAFLE 349

Query: 337 THRSTETRMKTQKENDQQEKLLLS 360
           T R  E R++ + EN +QE+L+LS
Sbjct: 350 TRRCVEARLRLETENQRQERLVLS 373

This is a membrane-bound, calcium-stimulable adenylyl cyclase. May be involved in learning, in memory and in drug dependence.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P97490|ADCY8_MOUSE Adenylate cyclase type 8 OS=Mus musculus GN=Adcy8 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/264 (33%), Positives = 145/264 (54%), Gaps = 35/264 (13%)

Query: 99  GVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWISYNE 158
           G  Y+G+  P+L NSF+   LE  YQRY   QR+KS +++N++D++ K  L V  +S   
Sbjct: 144 GYSYRGVIFPTLRNSFKSRDLERLYQRYFLGQRRKSEVVMNVLDVLTKLTLLVLHLSLAS 203

Query: 159 VELSQIDSTKLTWTVYTMMSNLAMCLLGWWR--CFANNYLQWAAVGTWILLNTQGWWRCF 216
             +  +    L +  +T +  + +C L   R    ++ YLQ++ V TW+ + TQ      
Sbjct: 204 APMDPLKGILLGF--FTGIE-VVICALVVVRKDNTSHTYLQYSGVVTWVAMTTQ------ 254

Query: 217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
                                ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct: 255 --------------------ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 294

Query: 277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
             TS+L V  T Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct: 295 LGTSLLQV--TLQVLIPR--LAVFSINQVLAQVVLFMCMNTAGIFISYLSDRAQRQAFLE 350

Query: 337 THRSTETRMKTQKENDQQEKLLLS 360
           T R  E R++ + EN +QE+L+LS
Sbjct: 351 TRRCVEARLRLETENQRQERLVLS 374

This is a membrane-bound, calcium-stimulable adenylyl cyclase. May be involved in learning, in memory and in drug dependence.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P32870|CYA1_DROME Ca(2+)/calmodulin-responsive adenylate cyclase OS=Drosophila melanogaster GN=rut PE=1 SV=2

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 25/254 (9%)

Query: 108 PSLTNSFREPSLEMSYQRYSHR-QRQKSLIIVNLVDMVLKAVLTVAWISYNEVELSQIDS 166
           P  T  F    LE  YQRY+ + QR   L +V LV  VL  V+    +++N         
Sbjct: 12  PLNTLRFENDELECLYQRYTLKLQRFSVLGVVALV-FVLCGVMAALSLTFNNAATFHNIF 70

Query: 167 TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAV 226
             +   ++ ++  L  C         +++L     G  ILL T     C     +    +
Sbjct: 71  NAIVCGLFAVVLVLLQC-----SVIKDHHLPTLCYG--ILLFTASI--CV----VSMPTL 117

Query: 227 GTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVII 286
           G+   ++T+  +++G+         W I+F+VF+ YAM+PL +      G     +H+ +
Sbjct: 118 GSVFPVDTKEVMAEGV---------WQIVFVVFLAYAMMPLQIWEAVAFGIALPSVHISL 168

Query: 287 TAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMK 346
           T   K+    L     +++ A  +++IG+N AG+    + +R QRR FL+T     +R++
Sbjct: 169 TV-YKIFTDALRYLEYNQLIANIVIFIGVNVAGLVVNIMMERAQRRTFLDTRNCIASRLE 227

Query: 347 TQKENDQQEKLLLS 360
            Q EN++ E+LLLS
Sbjct: 228 IQDENEKLERLLLS 241

This is a membrane-bound, calmodulin-sensitive adenylyl cyclase. Inactivation of this cyclase leads to a learning and memory defect.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q08828|ADCY1_HUMAN Adenylate cyclase type 1 OS=Homo sapiens GN=ADCY1 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 66/110 (60%), Gaps = 3/110 (2%)

Query: 251 IWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCL 310
           +W +L + FV+YA+LP+        G   +  H+++TA +   +    P     +GA  L
Sbjct: 163 VWQLLLVTFVSYALLPVRSLLAIGFGLVVAASHLLVTATLVPAK---RPRLWRTLGANAL 219

Query: 311 VYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           +++G+N  G++ + LT+R QR+AFL+     E R++ + EN++QE+LL+S
Sbjct: 220 LFVGVNMYGVFVRILTERSQRKAFLQARSCIEDRLRLEDENEKQERLLMS 269

This is a calmodulin-sensitive adenylyl cyclase. May be involved in regulatory processes in the central nervous system. It may play a role in memory acquisition and learning.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|O88444|ADCY1_MOUSE Adenylate cyclase type 1 OS=Mus musculus GN=Adcy1 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 241 GIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPC 300
            +G    E  +W +L + FV+YA+LP+        G   +  H+++TA +   +    P 
Sbjct: 152 AMGSTVAEQGVWQLLLVTFVSYALLPVRSLLAIGFGLVVAASHLLVTAALVPAK---RPR 208

Query: 301 SVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
               +GA  L++ G+N  G++ + LT+R QR+AFL+     E R++ + EN++QE+LL+S
Sbjct: 209 LWRTLGANALLFFGVNMYGVFVRILTERSQRKAFLQARNCIEDRLRLEDENEKQERLLMS 268

This is a calmodulin-sensitive adenylyl cyclase. May be involved in regulatory processes in the central nervous system. It may play a role in memory acquisition and learning.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|P19754|ADCY1_BOVIN Adenylate cyclase type 1 OS=Bos taurus GN=ADCY1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 65/110 (59%), Gaps = 3/110 (2%)

Query: 251 IWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCL 310
           +W +L + FV+YA+LP+        G   +  H+++TA +   +    P     +GA  L
Sbjct: 165 VWQLLLVTFVSYALLPVRSLLAIGFGLVVAASHLLVTATLVPAK---RPRLWRTLGANAL 221

Query: 311 VYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           +++G+N  G++ + L +R QR+AFL+     E R++ + EN++QE+LL+S
Sbjct: 222 LFLGVNVYGIFVRILAERAQRKAFLQARNCIEDRLRLEDENEKQERLLMS 271

This is a calmodulin-sensitive adenylyl cyclase. May be involved in regulatory processes in the central nervous system. It may play a role in memory acquisition and learning.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q01341|ADCY6_MOUSE Adenylate cyclase type 6 OS=Mus musculus GN=Adcy6 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 4/110 (3%)

Query: 251 IWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCL 310
           +W  +F V++TY +LP+ ++   + G   S LH+I+  Q+        P    ++GA  +
Sbjct: 237 LWCPVFFVYITYTLLPIRMRAAVLSGLGLSTLHLILAWQLN----SSDPFLWKQLGANVV 292

Query: 311 VYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           +++  N+ G+ T Y  +  QR+AF ET    + R+  Q EN QQE+LLLS
Sbjct: 293 LFLCTNAIGVCTHYPAEVSQRQAFQETRGYIQARLHLQHENRQQERLLLS 342

Membrane-bound, calcium-inhibitable adenylyl cyclase.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q03343|ADCY6_RAT Adenylate cyclase type 6 OS=Rattus norvegicus GN=Adcy6 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 251 IWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCL 310
           +W  +F V++TY +LP+ ++   + G   S LH+I+      H     P    ++GA  +
Sbjct: 237 LWCPVFFVYITYTLLPIRMRAAVLSGLGLSTLHLILA----WHLNNGDPFLWKQLGANVV 292

Query: 311 VYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           +++  N+ G+ T Y  +  QR+AF ET    + R+  Q EN QQE+LLLS
Sbjct: 293 LFLCTNAIGVCTHYPAEVSQRQAFQETRGYIQARLHLQHENRQQERLLLS 342

Membrane-bound, calcium-inhibitable adenylyl cyclase.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

>sp|Q04400|ADCY5_RAT Adenylate cyclase type 5 OS=Rattus norvegicus GN=Adcy5 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 251 IWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCL 310
           IW+ +F ++  Y +LP+ ++   + G   S LH+ I+    LH        + ++ +  L
Sbjct: 330 IWWTVFFIYTIYTLLPVRMRAAVLSGVLLSALHLAIS----LHTNAQDQFLLKQLVSNVL 385

Query: 311 VYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           ++   N  G+ T Y  +  QR+AF ET    + R+ +Q+EN QQE+LLLS
Sbjct: 386 IFSCTNIVGVCTHYPAEVSQRQAFQETRECIQARLHSQRENQQQERLLLS 435

This is a membrane-bound, calcium-inhibitable adenylyl cyclase.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
328719723	1336	PREDICTED: adenylate cyclase type 8-like	0.657	0.178	0.594	1e-88
91082343	1551	PREDICTED: similar to adenylate cyclase	0.676	0.157	0.514	1e-75
270007177	499	hypothetical protein TcasGA2_TC013718 [T	0.685	0.496	0.514	1e-74
170059532	1509	adenylate cyclase [Culex quinquefasciatu	0.657	0.157	0.516	1e-73
5514629	1718	adenylyl cyclase 78C-L [Drosophila melan	0.676	0.142	0.494	4e-73
442633835	1717	adenylyl cyclase 78C, isoform F [Drosoph	0.676	0.142	0.494	4e-73
442633830	1694	adenylyl cyclase 78C, isoform D [Drosoph	0.676	0.144	0.494	4e-73
281366555	1718	adenylyl cyclase 78C, isoform B [Drosoph	0.676	0.142	0.494	4e-73
442633832	1727	adenylyl cyclase 78C, isoform E [Drosoph	0.676	0.141	0.494	5e-73
195348445	1718	GM22165 [Drosophila sechellia] gi|194122	0.676	0.142	0.494	7e-73

>gi|328719723|ref|XP_001942943.2| PREDICTED: adenylate cyclase type 8-like [Acyrthosiphon pisum]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/269 (59%), Positives = 193/269 (71%), Gaps = 31/269 (11%)

Query: 94  PVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAW 153
           PVFKKG +YKGIYCP+LTNSFREPSLE+SYQRYSHRQRQKSLIIVN VDM LKAVL   W
Sbjct: 74  PVFKKGRVYKGIYCPTLTNSFREPSLELSYQRYSHRQRQKSLIIVNFVDMTLKAVLAGVW 133

Query: 154 I--SYNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQG 211
           +  +Y+E   SQ    +  WT  TM +NL +CLLGWW+                      
Sbjct: 134 LLPTYHEPYHSQ----RAIWTCLTMFANLTVCLLGWWK---------------------- 167

Query: 212 WWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKW 271
              CFANNYLQWAAV TW  +N QGF+ +  G  ++EYL+WY+LFIVFVTYAMLPLPL+W
Sbjct: 168 ---CFANNYLQWAAVFTWCFINVQGFVWESYGQGSREYLVWYVLFIVFVTYAMLPLPLRW 224

Query: 272 CFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQR 331
           C + GC+T++LH++IT+  K  +     C V ++ A+ L+Y  +N AGMYTKYLTDR QR
Sbjct: 225 CILAGCSTALLHILITSYTKSSKEKNRLCVVRQLTAMSLLYAAVNFAGMYTKYLTDRSQR 284

Query: 332 RAFLETHRSTETRMKTQKENDQQEKLLLS 360
           +AFLETHRSTE R KTQKEN+QQEKLLLS
Sbjct: 285 KAFLETHRSTEARFKTQKENEQQEKLLLS 313

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082343|ref|XP_966895.1| PREDICTED: similar to adenylate cyclase [Tribolium castaneum]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 187/284 (65%), Gaps = 39/284 (13%)

Query: 86  DSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVL 145
           D+  +    VFK+G++YKGIY PSLTNSF+   LE++Y RYSHRQRQK+LIIVN+VD +L
Sbjct: 98  DAAREDFASVFKRGLMYKGIYWPSLTNSFQCKHLELAYLRYSHRQRQKALIIVNIVDFLL 157

Query: 146 KAVLTVAWISYNEVELSQID-STKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTW 204
           KA LT  W      + +Q D  + + W+V  M  N+A+C+LGWW                
Sbjct: 158 KAALTTVWALTPNEDPNQDDYPSNIVWSVCCMSINIAICILGWW---------------- 201

Query: 205 ILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAM 264
                    RCFANNYL WAAV TW+LL TQ F   G G + KE L+WY+LF VFV YAM
Sbjct: 202 ---------RCFANNYLHWAAVCTWLLLTTQSFCGNGFGFSIKEDLVWYVLFTVFVPYAM 252

Query: 265 LPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVHE--------MGALCLVYIGIN 316
           LPLPL+WC I GC ++V H+I+ + I+L+    +P S+H+        + A  L+Y+ +N
Sbjct: 253 LPLPLRWCMIAGCLSAVGHIIVIS-IELY----TPKSLHDDNECKIRRIVANFLLYVAVN 307

Query: 317 SAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
            AGMYTKYLTDR QR+AFLETHRS ETR +TQ END+QEKLLLS
Sbjct: 308 FAGMYTKYLTDRSQRKAFLETHRSMETRYRTQSENDKQEKLLLS 351

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007177|gb|EFA03625.1| hypothetical protein TcasGA2_TC013718 [Tribolium castaneum]

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/284 (51%), Positives = 185/284 (65%), Gaps = 36/284 (12%)

Query: 86  DSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVL 145
           D+  +    VFK+G++YKGIY PSLTNSF+   LE++Y RYSHRQRQK+LIIVN+VD +L
Sbjct: 112 DAAREDFASVFKRGLMYKGIYWPSLTNSFQCKHLELAYLRYSHRQRQKALIIVNIVDFLL 171

Query: 146 KAVLTVAWISYNEVELSQID-STKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTW 204
           KA LT  W      + +Q D  + + W+V  M  N+A+C+LGWW                
Sbjct: 172 KAALTTVWALTPNEDPNQDDYPSNIVWSVCCMSINIAICILGWW---------------- 215

Query: 205 ILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAM 264
                    RCFANNYL WAAV TW+LL TQ F   G G + KE L+WY+LF VFV YAM
Sbjct: 216 ---------RCFANNYLHWAAVCTWLLLTTQSFCGNGFGFSIKEDLVWYVLFTVFVPYAM 266

Query: 265 LPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLS--------PCSVHEMGALCLVYIGIN 316
           LPLPL+WC I GC ++V H+I+ + I+L+  P S         C +  + A  L+Y+ +N
Sbjct: 267 LPLPLRWCMIAGCLSAVGHIIVIS-IELY-TPKSVSYLHDDNECKIRRIVANFLLYVAVN 324

Query: 317 SAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
            AGMYTKYLTDR QR+AFLETHRS ETR +TQ END+QEKLLLS
Sbjct: 325 FAGMYTKYLTDRSQRKAFLETHRSMETRYRTQSENDKQEKLLLS 368

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170059532|ref|XP_001865404.1| adenylate cyclase [Culex quinquefasciatus] gi|167878270|gb|EDS41653.1| adenylate cyclase [Culex quinquefasciatus]

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/265 (51%), Positives = 177/265 (66%), Gaps = 27/265 (10%)

Query: 96  FKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVLTVAWIS 155
           FK+G + KGI CPS+TNSFR PSLE SY  YSHRQRQKSLI+VN+VD+VLK VL   WI 
Sbjct: 191 FKRGNVVKGILCPSMTNSFRAPSLERSYLTYSHRQRQKSLILVNVVDLVLKIVLASVWIG 250

Query: 156 YNEVELSQIDSTKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVGTWILLNTQGWWRC 215
           +N   L  I + ++TW+V  ++SN  +C+LG WR F                        
Sbjct: 251 FNHPTL--IKAHEITWSVSCVISNFLICVLGSWRLF------------------------ 284

Query: 216 FANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIG 275
            ANNYL WAAV TW+LLN QGFI +G+G   +EYLIWY+LFI+FV YAMLPLPLKWC I 
Sbjct: 285 -ANNYLHWAAVCTWLLLNLQGFIGEGLGFAEREYLIWYVLFIIFVPYAMLPLPLKWCMIA 343

Query: 276 GCTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFL 335
           G  +++ H+I+T   K      + C V +M A  L+Y+ IN AGMYTKYLTDRGQR AF+
Sbjct: 344 GSVSAICHLIVTTINKFLHETDTTCIVRQMIANSLLYLAINFAGMYTKYLTDRGQRLAFI 403

Query: 336 ETHRSTETRMKTQKENDQQEKLLLS 360
           ETH++ E + +++KE  + ++LL S
Sbjct: 404 ETHKAMEHKRESEKEYQRTQRLLDS 428

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|5514629|gb|AAD44018.1|AF047382_1 adenylyl cyclase 78C-L [Drosophila melanogaster]

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 181/281 (64%), Gaps = 36/281 (12%)

Query: 90  DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVL 149
           + M   FK G + KGI CPSLTNSF++ SLE SY  Y+HRQRQKSLIIVN+VD VLK VL
Sbjct: 283 NEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVL 342

Query: 150 TVAWISYNEVELSQIDS-------TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVG 202
              WI     EL  I+S       T +TW+V   ++N+A+C LG+WR             
Sbjct: 343 AFVWI-MRRSELGPIESDDGTSMATAITWSVCCGIANMAICFLGYWR------------- 388

Query: 203 TWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTY 262
                       CFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV Y
Sbjct: 389 ------------CFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPY 436

Query: 263 AMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRG--PLSP-CSVHEMGALCLVYIGINSAG 319
           AMLPLPLKWC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AG
Sbjct: 437 AMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAG 496

Query: 320 MYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           MYTKYLTDRGQR AF+ETH++ E + +++KE  + +KLL S
Sbjct: 497 MYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDS 537

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442633835|ref|NP_001262139.1| adenylyl cyclase 78C, isoform F [Drosophila melanogaster] gi|440216107|gb|AGB94832.1| adenylyl cyclase 78C, isoform F [Drosophila melanogaster]

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 181/281 (64%), Gaps = 36/281 (12%)

Query: 90  DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVL 149
           + M   FK G + KGI CPSLTNSF++ SLE SY  Y+HRQRQKSLIIVN+VD VLK VL
Sbjct: 282 NEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVL 341

Query: 150 TVAWISYNEVELSQIDS-------TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVG 202
              WI     EL  I+S       T +TW+V   ++N+A+C LG+WR             
Sbjct: 342 AFVWI-MRRSELGPIESDDGTSMATAITWSVCCGIANMAICFLGYWR------------- 387

Query: 203 TWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTY 262
                       CFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV Y
Sbjct: 388 ------------CFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPY 435

Query: 263 AMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRG--PLSP-CSVHEMGALCLVYIGINSAG 319
           AMLPLPLKWC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AG
Sbjct: 436 AMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAG 495

Query: 320 MYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           MYTKYLTDRGQR AF+ETH++ E + +++KE  + +KLL S
Sbjct: 496 MYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDS 536

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442633830|ref|NP_001262137.1| adenylyl cyclase 78C, isoform D [Drosophila melanogaster] gi|440216105|gb|AGB94830.1| adenylyl cyclase 78C, isoform D [Drosophila melanogaster]

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 181/281 (64%), Gaps = 36/281 (12%)

Query: 90  DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVL 149
           + M   FK G + KGI CPSLTNSF++ SLE SY  Y+HRQRQKSLIIVN+VD VLK VL
Sbjct: 259 NEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVL 318

Query: 150 TVAWISYNEVELSQIDS-------TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVG 202
              WI     EL  I+S       T +TW+V   ++N+A+C LG+WR             
Sbjct: 319 AFVWI-MRRSELGPIESDDGTSMATAITWSVCCGIANMAICFLGYWR------------- 364

Query: 203 TWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTY 262
                       CFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV Y
Sbjct: 365 ------------CFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPY 412

Query: 263 AMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRG--PLSP-CSVHEMGALCLVYIGINSAG 319
           AMLPLPLKWC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AG
Sbjct: 413 AMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAG 472

Query: 320 MYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           MYTKYLTDRGQR AF+ETH++ E + +++KE  + +KLL S
Sbjct: 473 MYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDS 513

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281366555|ref|NP_524194.3| adenylyl cyclase 78C, isoform B [Drosophila melanogaster] gi|272455262|gb|AAF51680.3| adenylyl cyclase 78C, isoform B [Drosophila melanogaster]

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 181/281 (64%), Gaps = 36/281 (12%)

Query: 90  DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVL 149
           + M   FK G + KGI CPSLTNSF++ SLE SY  Y+HRQRQKSLIIVN+VD VLK VL
Sbjct: 283 NEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVL 342

Query: 150 TVAWISYNEVELSQIDS-------TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVG 202
              WI     EL  I+S       T +TW+V   ++N+A+C LG+WR             
Sbjct: 343 AFVWI-MRRSELGPIESDDGTSMATAITWSVCCGIANMAICFLGYWR------------- 388

Query: 203 TWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTY 262
                       CFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV Y
Sbjct: 389 ------------CFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPY 436

Query: 263 AMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRG--PLSP-CSVHEMGALCLVYIGINSAG 319
           AMLPLPLKWC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AG
Sbjct: 437 AMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAG 496

Query: 320 MYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           MYTKYLTDRGQR AF+ETH++ E + +++KE  + +KLL S
Sbjct: 497 MYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDS 537

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442633832|ref|NP_001262138.1| adenylyl cyclase 78C, isoform E [Drosophila melanogaster] gi|440216106|gb|AGB94831.1| adenylyl cyclase 78C, isoform E [Drosophila melanogaster]

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 181/281 (64%), Gaps = 36/281 (12%)

Query: 90  DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVL 149
           + M   FK G + KGI CPSLTNSF++ SLE SY  Y+HRQRQKSLIIVN+VD VLK VL
Sbjct: 283 NEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVL 342

Query: 150 TVAWISYNEVELSQIDS-------TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVG 202
              WI     EL  I+S       T +TW+V   ++N+A+C LG+WR             
Sbjct: 343 AFVWI-MRRSELGPIESDDGTSMATAITWSVCCGIANMAICFLGYWR------------- 388

Query: 203 TWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTY 262
                       CFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV Y
Sbjct: 389 ------------CFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPY 436

Query: 263 AMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRG--PLSP-CSVHEMGALCLVYIGINSAG 319
           AMLPLPLKWC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AG
Sbjct: 437 AMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAG 496

Query: 320 MYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           MYTKYLTDRGQR AF+ETH++ E + +++KE  + +KLL S
Sbjct: 497 MYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDS 537

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195348445|ref|XP_002040759.1| GM22165 [Drosophila sechellia] gi|194122269|gb|EDW44312.1| GM22165 [Drosophila sechellia]

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 139/281 (49%), Positives = 181/281 (64%), Gaps = 36/281 (12%)

Query: 90  DTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNLVDMVLKAVL 149
           + M   FK G + KGI CPSLTNSF++ SLE SY  Y+HRQRQKSLIIVN+VD VLK VL
Sbjct: 283 NEMYSAFKSGNVVKGILCPSLTNSFKQSSLERSYLTYTHRQRQKSLIIVNVVDFVLKIVL 342

Query: 150 TVAWISYNEVELSQIDS-------TKLTWTVYTMMSNLAMCLLGWWRCFANNYLQWAAVG 202
              WI     EL  I+S       T +TW+V   ++N+A+C LG+WR             
Sbjct: 343 AFVWI-MRRSELGPIESEDGTSMATAITWSVCCGIANMAICFLGYWR------------- 388

Query: 203 TWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTY 262
                       CFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV Y
Sbjct: 389 ------------CFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPY 436

Query: 263 AMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRG--PLSP-CSVHEMGALCLVYIGINSAG 319
           AMLPLPLKWC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AG
Sbjct: 437 AMLPLPLKWCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAG 496

Query: 320 MYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
           MYTKYLTDRGQR AF+ETH++ E + +++KE  + +KLL S
Sbjct: 497 MYTKYLTDRGQRLAFIETHKAMEHKKESEKELQRTQKLLDS 537

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
FB|FBgn0024150	1718	Ac78C "Adenylyl cyclase 78C" [	0.408	0.086	0.556	8.6e-44
UNIPROTKB|E7EVL1	1120	ADCY8 "Adenylate cyclase type	0.383	0.124	0.409	9.8e-38
UNIPROTKB|P40145	1251	ADCY8 "Adenylate cyclase type	0.383	0.111	0.409	1.4e-37
UNIPROTKB|E2RCX6	1251	ADCY8 "Uncharacterized protein	0.383	0.111	0.402	1.7e-37
RGD|2036	1248	Adcy8 "adenylate cyclase 8 (br	0.383	0.111	0.409	4.6e-37
UNIPROTKB|E1BQ12	1253	ADCY8 "Uncharacterized protein	0.383	0.110	0.395	4.7e-37
MGI|MGI:1341110	1249	Adcy8 "adenylate cyclase 8" [M	0.383	0.111	0.409	7.5e-37
ZFIN|ZDB-GENE-070912-197	1225	adcy8 "adenylate cyclase 8 (br	0.383	0.113	0.402	1.4e-36
UNIPROTKB|E1BTI9	1079	ADCY8 "Uncharacterized protein	0.375	0.126	0.418	1.6e-36
ZFIN|ZDB-GENE-041014-154	1187	si:dkey-206f10.1 "si:dkey-206f	0.455	0.139	0.355	1.2e-21

FB|FBgn0024150 Ac78C "Adenylyl cyclase 78C" [Drosophila melanogaster (taxid:7227)]

 Score = 476 (172.6 bits), Expect = 8.6e-44, P = 8.6e-44
 Identities = 84/151 (55%), Positives = 113/151 (74%)

Query:   211 GWWRCFANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLK 270
             G+WRCFANNYL WAAV TW+L N QGF+ QG+G  ++EYL+WYILF++FV YAMLPLPLK
Sbjct:   385 GYWRCFANNYLHWAAVCTWVLFNIQGFVGQGVGFADREYLVWYILFVIFVPYAMLPLPLK 444

Query:   271 WCFIGGCTTSVLHVIITAQIKLHRGP--LSP-CSVHEMGALCLVYIGINSAGMYTKYLTD 327
             WC +GG  T+  H+ +   IKL  G   ++P C + ++ A  ++Y  IN AGMYTKYLTD
Sbjct:   445 WCVVGGTITASCHLAVITIIKLQHGEATINPECVLFQIFANFILYTAINVAGMYTKYLTD 504

Query:   328 RGQRRAFLETHRSTETRMKTQKENDQQEKLL 358
             RGQR AF+ETH++ E + +++KE  + +KLL
Sbjct:   505 RGQRLAFIETHKAMEHKKESEKELQRTQKLL 535

GO:0004016 "adenylate cyclase activity" evidence=ISS;NAS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=IDA

GO:0031000 "response to caffeine" evidence=IDA

GO:0001582 "detection of chemical stimulus involved in sensory perception of sweet taste" evidence=IMP

GO:0010353 "response to trehalose stimulus" evidence=IDA

UNIPROTKB|E7EVL1 ADCY8 "Adenylate cyclase type 8" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 9.8e-38, Sum P(2) = 9.8e-38
 Identities = 59/144 (40%), Positives = 97/144 (67%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   238 SHTYLQYSGVVTWVAMTTQ-ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 296

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS+L VI+  Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct:   297 LGTSLLQVIL--QVVIPR--LAVISINQVVAQAVLFMCMNTAGIFISYLSDRAQRQAFLE 352

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   353 TRRCVEARLRLETENQRQERLVLS 376

GO:0004016 "adenylate cyclase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P40145 ADCY8 "Adenylate cyclase type 8" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 59/144 (40%), Positives = 97/144 (67%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   238 SHTYLQYSGVVTWVAMTTQ-ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 296

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS+L VI+  Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct:   297 LGTSLLQVIL--QVVIPR--LAVISINQVVAQAVLFMCMNTAGIFISYLSDRAQRQAFLE 352

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   353 TRRCVEARLRLETENQRQERLVLS 376

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0007611 "learning or memory" evidence=TAS

GO:0008294 "calcium- and calmodulin-responsive adenylate cyclase activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006833 "water transport" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007193 "adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007202 "activation of phospholipase C activity" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0034199 "activation of protein kinase A activity" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

UNIPROTKB|E2RCX6 ADCY8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
 Identities = 58/144 (40%), Positives = 97/144 (67%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   238 SHTYLQYSGVVTWVAMTTQ-ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 296

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS+L V++  Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct:   297 LGTSLLQVVL--QVVIPR--LAVISINQVVAQAVLFMCMNTAGIFISYLSDRAQRQAFLE 352

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   353 TRRCVEARLRLETENQRQERLVLS 376

GO:0007616 "long-term memory" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|2036 Adcy8 "adenylate cyclase 8 (brain)" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
 Identities = 59/144 (40%), Positives = 96/144 (66%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   235 SHTYLQYSGVVTWVAMTTQ-ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 293

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS+L V  T Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct:   294 LGTSLLQV--TLQVLIPR--LAVFSINQVLAQVVLFMCMNTAGIFISYLSDRAQRQAFLE 349

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   350 TRRCVEARLRLETENQRQERLVLS 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0006171 "cAMP biosynthetic process" evidence=ISO;IMP

GO:0007616 "long-term memory" evidence=IEA;ISO

GO:0008294 "calcium- and calmodulin-responsive adenylate cyclase activity" evidence=IDA;IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IDA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BQ12 ADCY8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 288 (106.4 bits), Expect = 4.7e-37, Sum P(2) = 4.7e-37
 Identities = 57/144 (39%), Positives = 95/144 (65%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   240 SHTYLQYSGVVTWVAMTTQ-ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 298

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS++ V++ A I      L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct:   299 LGTSLMQVVLQAVIPR----LAVISINQVVAQAVLFMCMNTAGIFISYLSDRAQRQAFLE 354

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   355 TRRCVEARLRLETENQRQERLVLS 378

GO:0007616 "long-term memory" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1341110 Adcy8 "adenylate cyclase 8" [Mus musculus (taxid:10090)]

 Score = 288 (106.4 bits), Expect = 7.5e-37, Sum P(2) = 7.5e-37
 Identities = 59/144 (40%), Positives = 96/144 (66%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   236 SHTYLQYSGVVTWVAMTTQ-ILAAGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAILAG 294

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS+L V  T Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLE
Sbjct:   295 LGTSLLQV--TLQVLIPR--LAVFSINQVLAQVVLFMCMNTAGIFISYLSDRAQRQAFLE 350

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   351 TRRCVEARLRLETENQRQERLVLS 374

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=IGI

GO:0005524 "ATP binding" evidence=IEA

GO:0006171 "cAMP biosynthetic process" evidence=ISO;IGI

GO:0007616 "long-term memory" evidence=IGI

GO:0008152 "metabolic process" evidence=IEA

GO:0008294 "calcium- and calmodulin-responsive adenylate cyclase activity" evidence=ISO

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-070912-197 adcy8 "adenylate cyclase 8 (brain)" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
 Identities = 58/144 (40%), Positives = 91/144 (63%)

Query:   217 ANNYLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGG 276
             ++ YLQ++   TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G
Sbjct:   212 SHGYLQYSGAVTWVAMATQ-ILATGLGYGLLGDGIGYVLFTLFATYSMLPLPLTWAIVAG 270

Query:   277 CTTSVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLE 336
               TS LH+ +   +     P +  S +++ A  L+++ IN+AGM+  YL+DR QR+AFLE
Sbjct:   271 LLTSALHIALQLLVP----PRAQISTNQLLAQVLLFLCINTAGMFISYLSDRAQRQAFLE 326

Query:   337 THRSTETRMKTQKENDQQEKLLLS 360
             T R  E R++ + EN +QE+L+LS
Sbjct:   327 TRRCIEARLRLETENQRQERLVLS 350

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IGI;IMP

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

UNIPROTKB|E1BTI9 ADCY8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
 Identities = 59/141 (41%), Positives = 95/141 (67%)

Query:   220 YLQWAAVGTWILLNTQGFISQGIGLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTT 279
             YLQ++ V TW+ + TQ  ++ G+G       I Y+LF +F TY+MLPLPL W  + G  T
Sbjct:   229 YLQYSGVVTWVAMATQ-ILAAGLGCGLLGDGIGYVLFTLFATYSMLPLPLTWAILAGLVT 287

Query:   280 SVLHVIITAQIKLHRGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHR 339
             SVL +I+  Q+ + R  L+  S++++ A  ++++ +N+AG++  YL+DR QR+AFLET R
Sbjct:   288 SVLQLIM--QLVIPR--LAVTSLNQIAAQAVLFMCMNTAGIFISYLSDRAQRQAFLETRR 343

Query:   340 STETRMKTQKENDQQEKLLLS 360
               E R++ + EN +QE+L+LS
Sbjct:   344 CVEARLRLETENQRQERLVLS 364

GO:0016021 "integral to membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004016 "adenylate cyclase activity" evidence=IEA

GO:0007616 "long-term memory" evidence=IEA

ZFIN|ZDB-GENE-041014-154 si:dkey-206f10.1 "si:dkey-206f10.1" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 63/177 (35%), Positives = 94/177 (53%)

Query:   184 LLGWWRCFANNYLQWAAVGTWILLNTQGWWRCFANNYLQWAAVGTWILLNTQGFISQGIG 243
             L+ W+      +    A+   +L+ T    R  +  +L +A + +W+    Q       G
Sbjct:   189 LMSWF----TGFFMACAIALCVLVLTCK--RSHSPKWLHYAGMASWLSQTAQVLGGLAYG 242

Query:   244 LNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLHRGPLSPCSVH 303
             L   +   WY+LF +F TY +LPLPL W    G  TS+LH  +TA+   H   +      
Sbjct:   243 LERDQS--WYVLFTLFATYTLLPLPLLWAIGAGTLTSILH--LTAETIRHISEVG--LFR 296

Query:   304 EMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLS 360
             ++ A  L+Y  +N AG++  YLTDR QR+AFLET R  E RMK + EN +QE+L+LS
Sbjct:   297 KLLAKALLYTSMNVAGLFIHYLTDRSQRQAFLETRRCIEGRMKLETENQRQERLVLS 353

GO:0004016 "adenylate cyclase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	362
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-09
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-09
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	5e-09
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	1e-08
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-08
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-08
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	5e-08
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-08
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	8e-08
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-07
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-07
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	4e-07
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	4e-07
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	5e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-07
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	7e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-06
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	1e-06
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	1e-06
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	1e-06
pfam03343	603	pfam03343, SART-1, SART-1 family	1e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-06
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-06
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	2e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-06
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-06
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	2e-06
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	2e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-06
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	4e-06
PTZ00053	470	PTZ00053, PTZ00053, methionine aminopeptidase 2; P	4e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
pfam00183	529	pfam00183, HSP90, Hsp90 protein	5e-06
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	5e-06
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	6e-06
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	7e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	7e-06
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	7e-06
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	8e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-06
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	8e-06
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	1e-05
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-05
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	1e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-05
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	2e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-05
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	2e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-05
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	2e-05
pfam08555	90	pfam08555, DUF1754, Eukaryotic family of unknown f	2e-05
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	2e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-05
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	3e-05
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-05
pfam09756	189	pfam09756, DDRGK, DDRGK domain	4e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	5e-05
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	5e-05
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	5e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-05
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	6e-05
cd09270	211	cd09270, RNase_H2-B, Ribonuclease H2-B is a subuni	6e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	7e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	7e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	8e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	9e-05
pfam07423	214	pfam07423, DUF1510, Protein of unknown function (D	9e-05
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	1e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	1e-04
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	1e-04
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	1e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	1e-04
pfam04641	254	pfam04641, Rtf2, Replication termination factor 2	1e-04
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	1e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	1e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	2e-04
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	2e-04
pfam09756	189	pfam09756, DDRGK, DDRGK domain	2e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	2e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	2e-04
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	2e-04
TIGR03927	150	TIGR03927, T7SS_EssA_Firm, type VII secretion prot	2e-04
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-04
pfam06424	131	pfam06424, PRP1_N, PRP1 splicing factor, N-termina	2e-04
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	2e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	3e-04
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	3e-04
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	3e-04
PRK11642	813	PRK11642, PRK11642, exoribonuclease R; Provisional	3e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	3e-04
PLN02967	581	PLN02967, PLN02967, kinase	3e-04
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	4e-04
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	4e-04
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	4e-04
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	5e-04
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	5e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	5e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	5e-04
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	5e-04
smart00435	391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	5e-04
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	5e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-04
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	6e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-04
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	7e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	7e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	7e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	7e-04
pfam04615	728	pfam04615, Utp14, Utp14 protein	7e-04
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	7e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-04
pfam00183	529	pfam00183, HSP90, Hsp90 protein	8e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	8e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	8e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	8e-04
COG4487	438	COG4487, COG4487, Uncharacterized protein conserve	8e-04
pfam13148	379	pfam13148, DUF3987, Protein of unknown function (D	8e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-04
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	9e-04
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	9e-04
pfam05786	719	pfam05786, Cnd2, Condensin complex subunit 2	9e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.001
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
pfam11861	154	pfam11861, DUF3381, Domain of unknown function (DU	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.001
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.001
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.001
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
PTZ00372	413	PTZ00372, PTZ00372, endonuclease 4-like protein; P	0.001
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
pfam09831	177	pfam09831, DUF2058, Uncharacterized protein conser	0.001
pfam14265	125	pfam14265, DUF4355, Domain of unknown function (DU	0.001
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	0.001
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.001
pfam04615	728	pfam04615, Utp14, Utp14 protein	0.001
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.001
pfam13476	204	pfam13476, AAA_23, AAA domain	0.001
pfam13166	713	pfam13166, AAA_13, AAA domain	0.001
PRK14160	211	PRK14160, PRK14160, heat shock protein GrpE; Provi	0.001
PHA03089	191	PHA03089, PHA03089, late transcription factor VLTF	0.001
pfam04696	131	pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein	0.001
pfam09736	141	pfam09736, Bud13, Pre-mRNA-splicing factor of RES	0.001
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.001
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.001
pfam03839	217	pfam03839, Sec62, Translocation protein Sec62	0.001
pfam08576	98	pfam08576, DUF1764, Eukaryotic protein of unknown	0.001
pfam05104	151	pfam05104, Rib_recp_KP_reg, Ribosome receptor lysi	0.001
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	0.002
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.002
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
COG4499	434	COG4499, COG4499, Predicted membrane protein [Func	0.002
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.002
smart00435	391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	0.002
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.002
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.002
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.002
pfam03839	217	pfam03839, Sec62, Translocation protein Sec62	0.002
pfam10661	145	pfam10661, EssA, WXG100 protein secretion system (	0.002
pfam12589	85	pfam12589, WBS_methylT, Methyltransferase involved	0.002
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.002
pfam07771	120	pfam07771, TSGP1, Tick salivary peptide group 1	0.002
pfam07133	164	pfam07133, Merozoite_SPAM, Merozoite surface prote	0.002
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG5644	869	COG5644, COG5644, Uncharacterized conserved protei	0.002
pfam05672	171	pfam05672, MAP7, MAP7 (E-MAP-115) family	0.002
PTZ00272	701	PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp	0.002
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.002
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	0.002
pfam06102	168	pfam06102, DUF947, Domain of unknown function (DUF	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
PRK14962	472	PRK14962, PRK14962, DNA polymerase III subunits ga	0.002
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.003
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.003
PRK12280	158	PRK12280, rplW, 50S ribosomal protein L23; Reviewe	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
pfam04641	254	pfam04641, Rtf2, Replication termination factor 2	0.003
TIGR03927	150	TIGR03927, T7SS_EssA_Firm, type VII secretion prot	0.003
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.003
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.003
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	0.003
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	0.003
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	0.003
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	0.003
pfam12720	169	pfam12720, DUF3807, Protein of unknown function (D	0.003
pfam14303	147	pfam14303, NAM-associated, No apical meristem-asso	0.003
pfam14058	136	pfam14058, PcfK, PcfK-like protein	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.004
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.004
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.004
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.004
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.004
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.004
pfam03839	217	pfam03839, Sec62, Translocation protein Sec62	0.004
COG1293	564	COG1293, COG1293, Predicted RNA-binding protein ho	0.004
COG1193	753	COG1193, COG1193, Mismatch repair ATPase (MutS fam	0.004
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.004

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 4/93 (4%)

Query: 10  EKKKRIEKRNKEE-EKEENEQEEKEKEDVEEEKNKKKKKK--KKKKKKKKKKKKKKKEEQ 66
           E+ + ++++ K+E E EE +Q+ +EK+  +EEK  KK+ K  KKK+KKKKKKK KK  ++
Sbjct: 50  ERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKK 109

Query: 67  SVKEIEESLKERKEKTLTEDSQCDTMIPVFKKG 99
             KE  +S +E  ++   E  +     PV    
Sbjct: 110 EEKEGSKSSEESSDEEE-EGEEDKQEEPVEIME 141

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 22/79 (27%), Positives = 46/79 (58%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
           K   G  E+K++ + + ++++K+E  +EE +    +EE  +K+  K+K+K+K+KK ++ +
Sbjct: 99  KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158

Query: 63  KEEQSVKEIEESLKERKEK 81
             E+  K      K R +K
Sbjct: 159 DREEEKKRERVRAKSRPKK 177

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query: 6   GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           G        +   ++  EKE   + EKE E  EEEK +KKKKK+ KK+KK+KK KK+K  
Sbjct: 119 GAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMV 178

Query: 66  QSVKEIEESLKERK 79
           +     ++  K++K
Sbjct: 179 EPKGSKKKKKKKKK 192

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E  + IEK  KE E+++  + + +K+  +++K+K K KK  KK  K +KK +K+ E  ++
Sbjct: 66  ELAEEIEKVKKEYEEKQ--KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123

Query: 70  EIEESLKERKEKT 82
           ++ +S  E     
Sbjct: 124 DLTKSYSETLSTL 136

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query: 6   GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           G         E  ++ E  E+    + EKE   EE+ KK+KKKKK+ KK+KK+KK KKE+
Sbjct: 117 GYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEK 176

Query: 66  QSVKEIEESLKERKEKT 82
               +  +  K++K+K 
Sbjct: 177 MVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 30/81 (37%), Positives = 46/81 (56%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           MR    G G       +   E E  E E   K +++ E E+ +KK+KKKKK+ KK+KK+K
Sbjct: 111 MRFFPTGYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170

Query: 61  KKKEEQSVKEIEESLKERKEK 81
           K K+E+ V+      K++K+K
Sbjct: 171 KDKKEKMVEPKGSKKKKKKKK 191

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            ++ + E    EE+ +   + E   E    +  +K K +KK KK K K K K K +  VK
Sbjct: 53  TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112

Query: 70  EIEESLKERKEKT 82
              +  K+   KT
Sbjct: 113 PQPKP-KKPPSKT 124

Length = 244

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 26/77 (33%), Positives = 52/77 (67%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
            KK  +K  K  EK E ++EE++KE  ++    KKK+++++++K+KK+++K++EE+  +E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464

Query: 71  IEESLKERKEKTLTEDS 87
            +E  +E+K+K  T   
Sbjct: 465 EKEEEEEKKKKQATLFD 481

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 25/79 (31%), Positives = 48/79 (60%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E+ + +    K  +K +   E+ EK+  EE+K KKKK    KKK+++++++K+K+E+  +
Sbjct: 397 EEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456

Query: 70  EIEESLKERKEKTLTEDSQ 88
           E EE  +E KE+   +  +
Sbjct: 457 EEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 23/81 (28%), Positives = 47/81 (58%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
             K      +  K  +  + +EE++E EQ ++EK+  +E+  ++ K +K K++ K+K+  
Sbjct: 84  GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143

Query: 61  KKKEEQSVKEIEESLKERKEK 81
           K+KE++  K++EE     +EK
Sbjct: 144 KEKEKEKEKKVEEPRDREEEK 164

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 22  EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
           +E E +++EE EKE   EE+ KKKK+ K K  K+  KKKKKK+  + K  + +    K+K
Sbjct: 64  DEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKK 123

Query: 82  TLTE 85
           +   
Sbjct: 124 SERI 127

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 7   GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
              E  K  EK  ++ ++E+ +++EK KE+ ++ K K++ K+K+  K+K+K+K+KK EE 
Sbjct: 98  PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157

Query: 67  SVKEIEESLKERKEKTLTEDSQ 88
             +E EE  +ER          
Sbjct: 158 RDRE-EEKKRERVRAKSRPKKP 178

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 23  EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE----QSVKEIEESLKER 78
           ++EE+E++E+EK  V  +   KK  K K ++K+K K++K+++     +     +E  ++ 
Sbjct: 38  DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97

Query: 79  KEKTLTEDS 87
           + + L E+S
Sbjct: 98  RLRKLQEES 106

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 24/65 (36%), Positives = 33/65 (50%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E K   E   K E +++ + EE E+E  EEE    KK KK KK K KK    K +  S  
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGD 360

Query: 70  EIEES 74
           + ++S
Sbjct: 361 DSDDS 365

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
          ++ K+  ++EE E+++ E+ K   K K KK  K K ++K+K K E+  K + E  ++  E
Sbjct: 31 DDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90

Query: 81 KTLTE 85
            L E
Sbjct: 91 DELAE 95

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 51.3 bits (122), Expect = 6e-07
 Identities = 17/81 (20%), Positives = 44/81 (54%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK+ E+  K+ +  + + EE +K     +   +    + +  ++K +  +KK+E++
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376

Query: 68   VKEIEESLKERKEKTLTEDSQ 88
             K+ + + K+ +EK   ++++
Sbjct: 1377 KKKADAAKKKAEEKKKADEAK 1397

Length = 2084

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 20/71 (28%), Positives = 29/71 (40%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
           E + + E  EE  +   E E   E    K K+K K +KK KK K K K +   K   +  
Sbjct: 55  EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQ 114

Query: 76  KERKEKTLTED 86
            + K+      
Sbjct: 115 PKPKKPPSKTA 125

Length = 244

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK-- 60
            +     +++ + EK+ K+E+ +E  ++ K KE+ +E++  K+K+K+K+KK ++ + +  
Sbjct: 103 GKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162

Query: 61  -KKKEEQSVKEIEESLKERKEKTLTED 86
            KK+E    K   +   ++K     ++
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKE 189

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 39/65 (60%)

Query: 22 EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
          E+++++ ++  ++E+ EE++ +K K   K K KK  K K +++E++ +E EE      E+
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86

Query: 82 TLTED 86
             ED
Sbjct: 87 DTPED 91

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/78 (26%), Positives = 41/78 (52%)

Query: 11 KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
            K + K   ++E E+++ ++   E+ +EEK ++K K   K K KK  K K +E++  K 
Sbjct: 15 PAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKR 74

Query: 71 IEESLKERKEKTLTEDSQ 88
           +E    R+ +  T + +
Sbjct: 75 EKEEKGLRELEEDTPEDE 92

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 41/59 (69%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           +K +    KE+E+EE E+ E E+ D EE+ ++  +K+  K K++K+++ ++K+++ +KE
Sbjct: 91  RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKE 149

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 27/89 (30%), Positives = 41/89 (46%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E KK+++  N   + +  E    +  DV E    KK KKKKKKKKK++K   + E +   
Sbjct: 242 EVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEA 301

Query: 70  EIEESLKERKEKTLTEDSQCDTMIPVFKK 98
           E   S      K + E++      P  +K
Sbjct: 302 EGLGSSDSGSRKDVEEENARLEDSPKKRK 330

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 12  KKRI----EKRNKEE-EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
           K R+      + K   EK+  +  +K      E+K K+K+K K KK+ +  K   K+ + 
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428

Query: 67  SVKEIE 72
           S    E
Sbjct: 429 SGTSEE 434

Length = 434

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 15  IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
           +++  K   K    + +  KE   E   +++K+K++ K++KKKKK+K KEE   ++ +E 
Sbjct: 77  VKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE 136

Query: 75  LKERKEKTLTEDS 87
            KE++     E  
Sbjct: 137 AKEKRPPKEKEKE 149

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK---KKKKKEEQSVKEIEESLKE 77
            E K++ ++  +E E V++E  +K+K K KKKK KKKK   K KK +++  K  ++  KE
Sbjct: 58  TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117

Query: 78  RKEK 81
            ++K
Sbjct: 118 AEDK 121

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 19/79 (24%), Positives = 56/79 (70%), Gaps = 4/79 (5%)

Query: 5   RGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
              A +K K+I ++ +++ +EE ++++K+    ++++ +++++K+KK+++K++++++ +E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464

Query: 65  EQSVKEIEESLKERKEKTL 83
           E    + EE  K++K+ TL
Sbjct: 465 E----KEEEEEKKKKQATL 479

Length = 482

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEE------KEKEDVEEEKNKKKKKKKKKKKKKK 56
           ++R  A +  K+ E+  K+ E+++ + EE       E +   E + +KK K++ KK+ ++
Sbjct: 95  EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEE 154

Query: 57  KKKKKKKEEQSVKEIEESLK---ERKEKTLTE 85
           + K K   E   K  E   K   E K K   +
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E  ++++K  +EEE++      K  E+  +E+ ++KK++KKK++++ K  K   EEQ  +
Sbjct: 256 EVLRKVDKTREEEEEKIL----KAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ--R 309

Query: 70  EIEESLKERKEK 81
           ++EE  ++++ +
Sbjct: 310 KLEEKERKKQAR 321

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 36/67 (53%)

Query: 14  RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
             E  +  EE+ ++E   +  E   E  NK  + K+K K ++ K+K++K+ E+  KE ++
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQ 301

Query: 74  SLKERKE 80
             K+  +
Sbjct: 302 LKKKLAQ 308

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 2    RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKK---KKKK 58
                  A E+K    ++ KEE K++ +  +K+ E+ ++    KKK ++ KKK    KK  
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAA 1414

Query: 59   KKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
              KKK +++ K+ EE  K  + K   E+++
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444

Length = 2084

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 7   GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           G  +K+K  E+   EEE E  E +E+E+ D   EK   K K++K+++ ++K+K+  KE+
Sbjct: 95  GLDKKEKEEEE---EEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 16/132 (12%)

Query: 6   GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
               +  K+  K++K++  +++    +   + +E +NK+  KKKKKKKKKKKKK   +  
Sbjct: 16  QNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75

Query: 66  Q---------SVKEIEESLKERKEKTLTEDSQCDTMIP------VFKKGVLYKGIYCPSL 110
                     S    +++   RK     E     T  P       FK G    G      
Sbjct: 76  DLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQTQPPTIPVSKQFKDGEYPVGEIQEYP 135

Query: 111 -TNSFREPSLEM 121
             NS R  S E 
Sbjct: 136 GENSSRTSSEEK 147

Length = 470

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 29/83 (34%), Positives = 49/83 (59%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK+ E+  K EE E+   E  +KE  E +K ++ KKK+ ++KKK ++ KK +EE  
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729

Query: 68   VKEIEESLKERKEKTLTEDSQCD 90
            +K  E   +  ++K   E+++ D
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKD 1752

Length = 2084

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 24/107 (22%)

Query: 20  KEEEKE----ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
           KE EKE    E E+E++EK++ EE+   K+++  ++++K++KKKK KK +++  E E   
Sbjct: 29  KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88

Query: 76  KE-----RKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREP 117
           K      R  K +T++               Y   Y  SLTN + +P
Sbjct: 89  KTKPIWTRNPKDVTKEE--------------YAAFY-KSLTNDWEDP 120

Length = 529

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 3/53 (5%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
           K+ + KR  EE KE+  +  K+K   EE+K +K+KKKKK+KKK KK+KKK ++
Sbjct: 365 KEELNKR-IEEIKEKYPKPPKKKR--EEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 17/55 (30%), Positives = 36/55 (65%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
           +     +K  +EEE+EE E EE ++E+  +E  +K+  K K++K+++ ++K+K+ 
Sbjct: 92  KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 5   RGGAGEKKKRIEKRNK--EEEKEENEQEEKEKEDVEEEKNKKKK----KKKKKKKKKKKK 58
                E   ++EK  +  EEEK+E +++++ K++ +E+K+KK+K    K  KKKKKKKKK
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192

Query: 59  K 59
           K
Sbjct: 193 K 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVE---EEKNKKKKKKKKKKKKKKKKKKKKKE 64
            A E KK+ E+  K +E ++  +E K+ E+ +   EE  K  + KKK ++ KK  + KKK 
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA 1492

Query: 65   EQSVKEIEESLKERKEKTLTEDSQ 88
            E++ K+ +E+ K  + K   ++++
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAK 1516

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 24/81 (29%), Positives = 40/81 (49%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E  K   +   +E +   E+ E  ++  EE K K    KKK ++KKK  + KKK E+ 
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403

Query: 68   VKEIEESLKERKEKTLTEDSQ 88
             K+ +E  K    K   ++++
Sbjct: 1404 KKKADELKKAAAAKKKADEAK 1424

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 19/81 (23%), Positives = 39/81 (48%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK+ E+  K +E ++  +E K+K D  ++K ++ KK  +  K + +    + E   
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Query: 68   VKEIEESLKERKEKTLTEDSQ 88
             K      K+ + K   + ++
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAK 1384

Length = 2084

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 11  KKKRIEKRNKEEEKEENEQE---EKEKEDVEEEKNKKKKKKK-KKKKKKKKKKKKKKEEQ 66
           KKK   K  K   ++   +E   + E     E+K+KKKK +  K++KKKKK+KKKKK+  
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169

Query: 67  S 67
           S
Sbjct: 170 S 170

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 47.2 bits (113), Expect = 8e-06
 Identities = 24/55 (43%), Positives = 40/55 (72%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
           +KR     EKKK+     K+EE+EE E+E+KE+E  EEE+  +++K+++++KKKK
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 18/79 (22%), Positives = 34/79 (43%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK  E + K EE ++     K+K +  ++  +  K + +    + +  ++K E   
Sbjct: 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370

Query: 68   VKEIEESLKERKEKTLTED 86
             K+ E   K    K   E+
Sbjct: 1371 KKKEEAKKKADAAKKKAEE 1389

Length = 2084

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 19  NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           ++EEE EE   +E E+ED  E K + K+KKK++  K K +K+K K E
Sbjct: 96  DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK-KEEQSVKEIEESLKERK 79
           E E ++ E+ EKE +  E  K KK+ K K  K+  KKKKKK     +S K      K++ 
Sbjct: 65  EPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124

Query: 80  EKTLTEDS 87
           E+     +
Sbjct: 125 ERISWAPT 132

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK----KKK 58
           ++ GG   K  +I+    ++E + +E ++   ED +EEK+KKKKKK  K KKK    KK 
Sbjct: 203 EKGGGGRGKDLKIKDLEGDDEDDGDESDKGG-EDGDEEKSKKKKKKLAKNKKKLDDDKKG 261

Query: 59  KKKKKEEQSVKEIEESLKERKEKTLTEDSQCD 90
           K+   ++    + ++   E +E+    DS   
Sbjct: 262 KRGGDDDADEYDSDDGDDEGREEDYISDSSAS 293

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 27/79 (34%), Positives = 46/79 (58%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E+KK++E+  K+E +E+ + EE +K + E +    ++ KK ++ KKK ++ KK EE  
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 68   VKEIEESLKERKEKTLTED 86
             K  E   KE +E    E+
Sbjct: 1688 KKAAEALKKEAEEAKKAEE 1706

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 4    RRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
            ++  A EKKK  E +  EEE +    EE +K   EE+K K ++ KK ++ +KK  +  KK
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKA--EEDKKKAEEAKKAEEDEKKAAEALKK 1696

Query: 64   EEQSVKEIEESLKERKEK 81
            E +  K+ EE  K+  E+
Sbjct: 1697 EAEEAKKAEELKKKEAEE 1714

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKEKEDVE--EEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            +KKK  E +     K++ ++ +K+ E+ +  +E  KK ++ KK  + KKK ++ KK E++
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 68   VKEIEESLKERKEKTLTEDSQ 88
             K+ EE+ K  + K   E+++
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAK 1483

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 36/70 (51%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
            K+ ++R K+ E++  E E++   +   +K  +++   +K  K+ ++  K+ EE+  +  
Sbjct: 63  AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122

Query: 72  EESLKERKEK 81
           E   K+  E 
Sbjct: 123 EAKAKQAAEA 132

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 11  KKKRIEKRNKE-EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
           K+K+ +K  KE +E++E  +++K +   + E+N KK+K  KK KKKKK KKK +
Sbjct: 151 KEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGR 204

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 43/72 (59%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           K++  EKR  +E+++E E++ +E  D EEEK +++ + K + KK  KKK   K+++  +E
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193

Query: 71  IEESLKERKEKT 82
            ++    R+   
Sbjct: 194 EKQRQAAREAVK 205

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKK 53
           +  +    E++++ EK+ K+E K+E ++++ +KE + E K  KKKKKKKKKK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 20/67 (29%), Positives = 41/67 (61%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
           EEE E     +K  + +++   K +KK++++KK+KKKK    K+++  +E E+  KE ++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455

Query: 81  KTLTEDS 87
           +   E++
Sbjct: 456 EEEEEEA 462

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 12   KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
            K   E +  EE+K++ E+ +K +ED   EK   +  KK+ ++ KK ++ KKKE +  K+ 
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEED---EKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718

Query: 72   EESLKERKEKTL 83
            EE  K  +E  +
Sbjct: 1719 EELKKAEEENKI 1730

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 10   EKKKRIEKRNKEEEK------EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
            E+KK+ E+  K EE+      EE ++ E++K+  EE K  ++ +KK  +  KK+ ++ KK
Sbjct: 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703

Query: 64   EEQSVKEIEESLKERKE 80
             E+  K+  E  K+ +E
Sbjct: 1704 AEELKKKEAEEKKKAEE 1720

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 40/81 (49%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK+ +   K+ E+ +   E  + E        +  ++K +  +KKK++ KKK + +
Sbjct: 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383

Query: 68   VKEIEESLKERKEKTLTEDSQ 88
             K+ EE  K  + K   E+ +
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDK 1404

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 27/79 (34%), Positives = 42/79 (53%)

Query: 3    KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
            K++  A +KK    K+  E  K E E    E E  EE+    +KKK++ KKK    KKK 
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387

Query: 63   KEEQSVKEIEESLKERKEK 81
            +E++   E ++  +E K+K
Sbjct: 1388 EEKKKADEAKKKAEEDKKK 1406

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDV----EEEKNKKKKKKKKKKKKKKKKKKKKK 63
            A E KK  E + K EE ++ E++EK+  +      EE  K ++ KKK+ ++KKK ++ KK
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723

Query: 64   EEQSVKEIEESLKERKEK 81
             E+  K   E  K+  E+
Sbjct: 1724 AEEENKIKAEEAKKEAEE 1741

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 48/74 (64%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E +K+  +  K+E +E  + EE +K++ EE+K  ++ KK +++ K K ++ KK+ E+ 
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742

Query: 68   VKEIEESLKERKEK 81
             K+ EE+ K+ +EK
Sbjct: 1743 KKKAEEAKKDEEEK 1756

Length = 2084

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 14  RIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
           +I +       +E E+ E+E  D  E+++  + K + K+KKK++  K K E++  K   +
Sbjct: 86  KIFRELSSS-DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144

Query: 74  SLKERKEK 81
             K  K K
Sbjct: 145 KPKPSKPK 152

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKK--------KKKKKKK 61
           E KK  E   KE   E  E+  K + + E+E  +++ + +K +K+         +K +  
Sbjct: 46  EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105

Query: 62  KKEEQSVKEIEESLKERKEKTLTEDSQCDTMI 93
           +K E+ +++ E+ L++++++   ++ + + +I
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELI 137

Length = 520

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 14/62 (22%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
            +++R G   KK+RI  R + E  +E             EK K+ +K ++KK K+++K+K
Sbjct: 83  KKRKRPG---KKRRIALRLRRERTKE-----------RAEKEKRTRKNREKKFKRRQKEK 128

Query: 61  KK 62
           +K
Sbjct: 129 EK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 26/48 (54%)

Query: 41 KNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
          K KK   KKKKKKKKKK K K++     +E E+S  E   K   ED  
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDED 60

This is a eukaryotic protein family of unknown function. Length = 90

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 3  KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
           ++    + +  I   N EE K+  E  E    D +E K  +K +KK +K K K +KKK 
Sbjct: 32 AQKKKGKKGELEITDLN-EEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKA 90

Query: 63 KEEQS 67
          K+E+ 
Sbjct: 91 KKEEP 95

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVE--EEKNKKKKKKKKKKKKKKKKKKKKKEE 65
            A  KKK  E + K EEK++ ++ +K+ E+ +  +E  KK ++ KK ++ KKK ++ KK +
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473

Query: 66   QSVKEIEESLKERKEKTLTEDSQ 88
            ++ K+ EE+ K  + K   E+++
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAK 1496

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 2    RKRRGGAGEKKKRIEKRNKEEEKEENEQEEK--EKEDVEEEKNKKKKKKKKKKKKKKKKK 59
            R++     E+ ++ ++  K EEK++ ++ +K  EK+  +E K K ++ KK  + KKK ++
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326

Query: 60   KKKKEEQSVKEIEESLKERKEKTLTEDSQCD 90
             KKK + + K+ EE+ K  +      ++  D
Sbjct: 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 19/78 (24%), Positives = 39/78 (50%)

Query: 11   KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
            KKK    + K EE ++  +  K + +   ++ +  ++K +  +KKK++ KKK +    K 
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387

Query: 71   IEESLKERKEKTLTEDSQ 88
             E+   +  +K   ED +
Sbjct: 1388 EEKKKADEAKKKAEEDKK 1405

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKK----KKKKKKKKKK 63
            A EKKK  E + K EE ++ ++ +K+ E+ +++ +  KKK ++ KK     K + +    
Sbjct: 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357

Query: 64   EEQSVKEIEESLKERKEK 81
            E ++ +E  E+ +++KE+
Sbjct: 1358 EAEAAEEKAEAAEKKKEE 1375

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEK---EKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
            A E KK  E + K EE ++ E+ +K   E +  +E K K ++ KK  + KKK ++ KKK 
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499

Query: 65   EQSVKEIEESLKERKEKTLTEDSQCD 90
            +++ K  E   K  + K   E  + D
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKKAD 1525

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKK--KKKKKKKKKEE 65
            A EKKK  E + K EE ++ ++ +K+ E+ ++ +  KKK ++ KK    KKK ++ KK +
Sbjct: 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486

Query: 66   QSVKEIEESLKERKE 80
            ++ K+ EE+ K+  E
Sbjct: 1487 EAKKKAEEAKKKADE 1501

Length = 2084

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 24/64 (37%), Positives = 34/64 (53%)

Query: 22  EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
            E+ E EQ+E  KE  E+E  K KK+KK+KK+KK  +K  KK+     +       +K  
Sbjct: 92  PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151

Query: 82  TLTE 85
           T  E
Sbjct: 152 TKKE 155

Length = 158

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           K K+ +K N E +K+  ++++K+KE  E +   + K   K  KK KK KKK  + +  ++
Sbjct: 56  KDKKEDK-NNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114

Query: 71  IEESLKERKEKT 82
           ++ +  +  E  
Sbjct: 115 VDNAFNKIAELA 126

Length = 413

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 16/73 (21%), Positives = 39/73 (53%)

Query: 9   GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
            ++K++  +  ++ E+E+  +  + K   ++   KK   KKK+  +++K+++  +E    
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206

Query: 69  KEIEESLKERKEK 81
           K  E  + E +EK
Sbjct: 207 KPEEPDVNEEREK 219

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 24/80 (30%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 11   KKKRIEKRNKEEEKEENEQEEKEKEDVE--EEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
            KKK  EK+  +E K++ E+++K+ ++++      KK  + KKK ++KKK  + KK+ +  
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA 1443

Query: 69   KEIEESLKERKEKTLTEDSQ 88
            K+ +E+ K+ +E    E+++
Sbjct: 1444 KKADEAKKKAEEAKKAEEAK 1463

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEK--EKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
            A EKKK  E +  EE+K+ +E ++K  E +  +E K K ++ KKK    KKK ++ KK  
Sbjct: 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345

Query: 66   QSVKEIEESLKERKEKT 82
            ++ K   E+  +  E  
Sbjct: 1346 EAAKAEAEAAADEAEAA 1362

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            EKK + E+  K EE  + + EE +K + E++K ++ KKK+ ++KKK ++ KK +EE  +K
Sbjct: 1604 EKKMKAEEAKKAEE-AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662

Query: 70   EIEESLKERKEKTLTEDSQ 88
              EE+ K  ++K   E+++
Sbjct: 1663 AAEEAKKAEEDKKKAEEAK 1681

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 9   GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
            E  + I + + E  +   E E+ EKE V+E +  K++ ++ +K+ +  +  K+K E+ +
Sbjct: 203 EEVLREINEISSELPELREELEKLEKE-VKELEELKEEIEELEKELESLEGSKRKLEEKI 261

Query: 69  KEIEESLKERKEK 81
           +E+EE ++E K++
Sbjct: 262 RELEERIEELKKE 274

Length = 880

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 54/78 (69%), Gaps = 4/78 (5%)

Query: 7  GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK----KKK 62
          GA ++ K  EK+ + +++E  E+E +E++ +EE++  ++K++++ +++++KKK    +K+
Sbjct: 4  GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63

Query: 63 KEEQSVKEIEESLKERKE 80
          +EEQ+ KE EE  K +  
Sbjct: 64 REEQARKEQEEYEKLKSS 81

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 27/72 (37%), Positives = 47/72 (65%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E   ++ K NKEEEKE+  QEE+ K   +EE+  K +  K +++K   ++K K+ E+ +K
Sbjct: 266 EILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELK 325

Query: 70  EIEESLKERKEK 81
           ++E+ LK+ KE+
Sbjct: 326 KLEKELKKEKEE 337

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14  RIEKRNKEEEKEE--NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
           +IE+  +E  K    +E   K K   E++  K  KK   K+ +KK+K+K+K + +     
Sbjct: 359 KIERYIEEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418

Query: 72  EESLKERKEKTLTEDS 87
            +++ +R++ + T + 
Sbjct: 419 TKNIGKRRKPSGTSEE 434

Length = 434

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 8   AGEKKKRIEKRNKEEEKEENEQEEKEK-EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
           A E K +     K + + E E++ KE+ +   EE+ K K   + KKK  + KKK + E +
Sbjct: 121 AEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180

Query: 67  SVKEIEESLKERKEKTLTED 86
           +  E +   K  + K   E 
Sbjct: 181 AKAEAKAKAKAEEAKAKAEA 200

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 12/59 (20%), Positives = 35/59 (59%)

Query: 9   GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            +++    +  KEEEKE    E+KE +   E+++++ +++ +++ ++   + +K+ E+ 
Sbjct: 55  DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEK 113

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 10  EKKKRIEKRNKEEEKE-ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
           E K   +   + ++K+ E E++ +  E   E+K K K++ KKKK K+ K  K  K
Sbjct: 219 EFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 8    AGEKKKRIEKRNKEEEK---EENEQEEKEKEDVEEEKNK----KKKKKKKKKKKKKKKKK 60
            A E KK  EK+  +E K   EE ++ ++ K+  EE K K    KKK ++ KK  +  K +
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351

Query: 61   KKKEEQSVKEIEESLKERKEKTLTEDSQCD 90
             +      +  EE  +  ++K      + D
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 28/95 (29%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 3    KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDV--EEEKNKKKKKKKKKKKKKKKKKK 60
            +++     KK+  E +  EE K++  +E+K+ E++   EE+NK K ++ KK+ ++ KKK 
Sbjct: 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746

Query: 61   K--KKEEQSVKEIEESLKERKEKTLTEDSQCDTMI 93
            +  KK+E+  K+I    KE ++K      + + +I
Sbjct: 1747 EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781

Length = 2084

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 17  KRNKEEEKEENEQEEKEKE---DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           K++K + K+   Q+   +E   D E  K  +KK KKKK +  K++KKKKKE++  K
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
           K +R++K+  + ++ E  +++K+  + EEEK KKKKK  KKKK KK      K
Sbjct: 152 KVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204

Ribonuclease H2B is one of the three proteins of eukaryotic RNase H2 complex that is required for nucleic acid binding and hydrolysis. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is active during replication and is believed to play a role in removal of Okazaki fragment primers and single ribonucleotides in DNA-DNA duplexes. Eukaryotic RNase HII is functional when it forms a complex with RNase H2B and RNase H2C proteins. It is speculated that the two accessory subunits are required for correct folding of the catalytic subunit of RNase HII. Mutations in the three subunits of human RNase HII cause neurological disorder. Length = 211

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           RK +  A EK+   EK  ++E+K E  +    +E+ + E+ + K + KK  KKK   KKK
Sbjct: 131 RKPKEEAKEKRPPKEKEKEKEKKVEEPR--DREEEKKRERVRAKSRPKKPPKKKPPNKKK 188

Query: 62  KKEEQSVKEIEESLKE 77
           +  E+  +        
Sbjct: 189 EPPEEEKQRQAAREAV 204

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 15/57 (26%), Positives = 43/57 (75%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK 58
            +++    +K+K+ +    ++++EE E+E+++KE+ +EE+ ++ +++K+++++KKKK
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 19/76 (25%), Positives = 44/76 (57%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           + +   EK  +E   E  + E++  +  E    K +  +K++++ +KK+K+ ++++Q ++
Sbjct: 68  KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127

Query: 70  EIEESLKERKEKTLTE 85
           + EE L+E  E+ L E
Sbjct: 128 KKEEELEELIEEQLQE 143

Length = 520

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 13  KRIEKRNKEEE--KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           KR+EK   +    K +  +E K +   EEEK +K++ K++KKKKK+K K++ K+ +  +E
Sbjct: 78  KRVEKGGSKGPAAKTKPAKEPKNESGKEEEK-EKEQVKEEKKKKKEKPKEEPKDRKPKEE 136

Query: 71  IEESLKERKEKTLTE 85
            +E    ++++   E
Sbjct: 137 AKEKRPPKEKEKEKE 151

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKK-------KKKKKKKK 54
              +    EK + +E+R +E +KE  E EEK KE ++E K K ++        ++   + 
Sbjct: 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDEL 309

Query: 55  KKKKKKKKKEEQSVKEIEESLKERKEK 81
           ++ +K+  + E+ +  IEE +KE +EK
Sbjct: 310 REIEKRLSRLEEEINGIEERIKELEEK 336

Length = 880

>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510)

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 20/80 (25%), Positives = 43/80 (53%)

Query: 9   GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
                     +++E K+ ++QE  E E+V+EE+ +    + K+ K   +K+ ++ EE++ 
Sbjct: 37  PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96

Query: 69  KEIEESLKERKEKTLTEDSQ 88
           +E EES  E +++T  +   
Sbjct: 97  EEDEESSDENEKETEEKTES 116

This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Length = 214

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 37/57 (64%)

Query: 25  EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
            E  + +K+K+++ EE  K KK+ ++K+K K KKKK KK++   K+ ++  K+ K +
Sbjct: 55  AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 23/72 (31%), Positives = 44/72 (61%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E++K  + + +E +    E+EE + E ++ E+ K   ++K K+ +K+ KK +K+ ++  +
Sbjct: 277 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336

Query: 70  EIEESLKERKEK 81
           EIEE  KE KE 
Sbjct: 337 EIEELEKELKEL 348

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 35/51 (68%)

Query: 13  KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
           K++ +   E +  E  + + ++E +++E+N+KK+K++  + K+K++K ++K
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433

Length = 434

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 42 NKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQ 88
          +KKK KK KK+K+K++K+ +K  +    E++++ +E K +    D +
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRE 59

This domain, found in various prokaryotic proteins, has no known function. Length = 177

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 12   KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
            ++ +E++ + EEKE  +++  + +   +    +K K KKK+KKKKK    K ++ SV  
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVG 1196

Length = 1388

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 19  NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
                + E E+ E       E K  +KK++K +KK +K++ +K   ++  +   +  K  
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449

Query: 79  KEKTLTED 86
             +T   D
Sbjct: 450 DGETKKVD 457

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 27  NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIE-----------ESL 75
            E+ E  K  +EEE+ KKKKKKKKKK KK        E      +            E+ 
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225

Query: 76  KERKEKTLTEDSQ 88
           K +K++++  D++
Sbjct: 226 KLKKKRSIAPDNE 238

It is vital for effective cell-replication that replication is not stalled at any point by, for instance, damaged bases. Rtf2 stabilizes the replication fork stalled at the site-specific replication barrier RTS1 by preventing replication restart until completion of DNA synthesis by a converging replication fork initiated at a flanking origin. The RTS1 element terminates replication forks that are moving in the cen2-distal direction while allowing forks moving in the cen2-proximal direction to pass through the region. Rtf2 contains a C2HC2 motif related to the C3HC4 RING-finger motif, and would appear to fold up, creating a RING finger-like structure but forming only one functional Zn2+ ion-binding site. Length = 254

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
          E+K   +K   +   +E  + EK++E+ + E  K  K   ++K + + +K +K+ E+   
Sbjct: 4  EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEA 63

Query: 70 EIEES-LKERKEKTLTED 86
          E+    LK   +K L+E 
Sbjct: 64 ELARRELKAEAKKMLSEK 81

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 39/70 (55%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
           K+  E+R K+E+++  E ++K+  + E  K  +K++   +++KK+ ++  K+     K+ 
Sbjct: 75  KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134

Query: 72  EESLKERKEK 81
           EE+  +    
Sbjct: 135 EEAAAKAAAA 144

Length = 387

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKE-DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           KK  E++ K + K++  +++K+K+ D +++K   K +KK +K+ + K +   K       
Sbjct: 75  KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLS 134

Query: 71  IEESLKERK 79
               LK RK
Sbjct: 135 TLSELKPRK 143

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 33/69 (47%)

Query: 30  EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQC 89
            E+E E +   K   KK KK  +K +KK++++KKE++      +  +E +E+   +  + 
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 90  DTMIPVFKK 98
                   +
Sbjct: 455 KEEEEEEAE 463

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK---KKKEEQ 66
             KKK    + K EEK++ ++ +K+ E+ +++ ++ KK    KKK  + KKK   KKK ++
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435

Query: 67   SVKEIEESLKERKEKTLTEDSQ 88
            + K+ EE+ K  + K   E+++
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAK 1457

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVE---EEKNKKKKKKKKKKKKKKKKKKKKKE 64
            A E KK+ E+  K EE ++  +E K+ ++ +   EE  K  + KKK ++ KKK  + KK 
Sbjct: 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505

Query: 65   EQSVKEIEESLKERKEKTLTE 85
             ++ K+ +E+ K  + K   E
Sbjct: 1506 AEAKKKADEAKKAEEAKKADE 1526

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 8    AGEKKKRIEKRNKEEEK----EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
            A EKKK  E + K EE     +E ++    K+  +E K K ++KKK  + KKK ++ KK 
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446

Query: 64   EEQSVKEIEESLKERKEKTLTEDSQCD 90
            +E   K  E    E  +K   E  + D
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKAD 1473

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 10/90 (11%)

Query: 4    RRGGAGEKKKRIEKRNKEEE--------KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
            ++  A EKKK  E +  EEE        K+E E+++K+ E+ ++++ +KKK    KK+++
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767

Query: 56   KKKKKKKKEEQSVKEIEESLKERKEKTLTE 85
            KK ++ +KE+++V  IEE L E  EK   E
Sbjct: 1768 KKAEEIRKEKEAV--IEEELDEEDEKRRME 1795

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 11   KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE----Q 66
            KKK  E +   E K++ ++ +K +E  + ++ KK ++ KK  + KK ++KKK +E    +
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555

Query: 67   SVKEIEESLKERKEKTLTED 86
             +K+ EE  K  + K   ED
Sbjct: 1556 ELKKAEEKKKAEEAKKAEED 1575

Length = 2084

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 17  KRNKEEEKEENEQEEKEKEDVEEEKNKKKK---KKKKKKKKKKKKKKKKK 63
            +  EEE++E  QE+KE++  EE + K  K   ++++K ++K++KK+ +K
Sbjct: 273 LKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            +K++ E   + EEKE  + ++++KE  E++  +K  KKK  K  K   KK  K+  + K
Sbjct: 95  SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKK 154

Query: 70  EIEE 73
           E  +
Sbjct: 155 EEGK 158

Length = 158

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 45/62 (72%)

Query: 20 KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
          K+  K E +Q  +++ + EEE+ +++KK ++K++ ++K++++ +EE+  K+ EE  KER+
Sbjct: 6  KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65

Query: 80 EK 81
          E+
Sbjct: 66 EQ 67

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKK-KKKKKKKKKKKKKEEQSV 68
           EK+K++++   +   +E E+ + E   +E  K   ++K K+ +K+ KK +K+ KKE++ +
Sbjct: 279 EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEI 338

Query: 69  KEIEESLKERKEKTLTEDSQ 88
           +E+E+ LKE + K   E+ +
Sbjct: 339 EELEKELKELEIKREAEEEE 358

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 33/49 (67%)

Query: 18  RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
           +   E K+E +  E+ +   +EEK K+++ +KK+K++  + K+K+++++
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 32/51 (62%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           +  +  ++ +  EE E   +EEK K++  E+K K++  + K+K++K ++KK
Sbjct: 384 KLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
           KK    K   +  +E   + ++EK   EE + K+K++  + K+K++K ++KK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
           E+KK  +K+ K E+K E E+ EK      ++K +   KK K    + KK 
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAA---AKKKAEAAAKKAKGPDGETKKV 456

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
           K    E ++  EK      E+K+KK KKK+KK+K+K++ K KKKE +  K +  +L
Sbjct: 177 KHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLAL 232

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK---KKKKEEQSV 68
           KK IE  N +  +EE E +++     E++K   +K K+K ++++ K +   +   E  +V
Sbjct: 33  KKDIEI-NTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTV 91

Query: 69  KEIEESL--KERKEKTLTEDSQCDTM 92
           K  ++ L   E ++ + + +S  +  
Sbjct: 92  KATKKQLFSSEYEQTSSSSESTSEEE 117

Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions [Protein fate, Protein and peptide secretion and trafficking]. Length = 150

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 7   GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEE----KNKKKKKKKKKKKKKKKKKKKK 62
               K+K+ +K   E   +E  +EE  K DV  E    +     + + + + K   ++  
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSD 282

Query: 63  KEEQSVKEIEESLKERKEKTLTEDSQCDTMIPV 95
            EE++ ++ +E  ++R +K + ++ + + M  V
Sbjct: 283 SEEETEEKEKEK-RKRLKKMMEDEDEDEEMEIV 314

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 50/87 (57%), Gaps = 10/87 (11%)

Query: 9   GEKKKRIEKRNKEEEKE------ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
            +++    KR ++ + E      + + E++E + + E  +++  +++KK++++K+K++ +
Sbjct: 32  DDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIE 91

Query: 63  KEEQSVKEIEES---LKERKEKTLTED 86
           K  +   +I++    LK R   T+TED
Sbjct: 92  KYREENPKIQQQFADLK-RNLATVTED 117

This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression. Length = 131

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVE---EEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
            +  RIE+R++  EK++ E  EK +++++   E  N        +KK+K K + +K+ EQ
Sbjct: 120 RRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYN--------EKKEKTKAQNRKEAEQ 171

Query: 67  SVKEIEESLK 76
            + E ++   
Sbjct: 172 FLAERDDFSS 181

Length = 225

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 38/54 (70%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKK 54
            R+      +KK    K+ +EEE+EE E++E+EKE+ EEE  ++K+++++KKKK
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEK-----EKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
            A E KK  E + K EE ++ E+E+K     +K++ EE+K  ++ KK +++ K K  ++ K
Sbjct: 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668

Query: 63   KEEQSVKEIEESLKERKEKTLTEDS 87
            K E+  K+ EE+ K  +++    ++
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKKAAEA 1693

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 11   KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
            ++ RIE+  K  E+E+  + E+ K+  EE K K ++ KK +++KKK ++ KKKE +  K+
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648

Query: 71   IEESLKERKEKTL 83
             EE  K  +E  +
Sbjct: 1649 AEELKKAEEENKI 1661

Length = 2084

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 36/64 (56%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           +K    +K++++++K++ E++E + E   +   K  KK KK KKK  K K  +  + +  
Sbjct: 61  DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFN 120

Query: 70  EIEE 73
           +I E
Sbjct: 121 KIAE 124

Length = 413

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 20 KEEEKEENEQEEKEKED--VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKE 77
          KE     +E+E K       +++K  K  + KKK +KKKKKKK+KKE +S  E +   K 
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95

Query: 78 RKEK 81
           K+ 
Sbjct: 96 PKKS 99

Length = 413

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 15  IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
            +KR  EE+ E  E   ++K   +EE  KKK K+ K  K  KK   K  
Sbjct: 232 KKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGM 280

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 16  EKRNKEEEKEENEQEEKEKED--VEEEKNKKKKKKKKKKKKKKKKKKKKK 63
               K+E     E E K KE+   +EE  KK+K++  + K+K++K ++KK
Sbjct: 385 LGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           R  R   G+  +   K+    +K    ++  +K + E +   + +KK K K  KK  +K 
Sbjct: 729 RAPRN-VGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKA 787

Query: 62  KKEEQSVKEIEESLKERKEKTLTEDS 87
           KK     ++I  + K ++        
Sbjct: 788 KKPSAKTQKIAAATKAKRAAKKKVAE 813

Length = 813

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 10  EKKKRIEKRNKE-EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
           ++KK+ E+  +E + K+  EQE  ++ + E  K ++++K+ ++ +K+ + ++K++EEQ+ 
Sbjct: 80  QRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQAR 139

Query: 69  KEIEESLKERKE 80
           K   E  K+ + 
Sbjct: 140 KAAAEQKKKAEA 151

Length = 387

>gnl|CDD|215521 PLN02967, PLN02967, kinase

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK---------- 52
            R      KK  +E     E  EE  +    ++   ++++KK  ++ ++K          
Sbjct: 74  TRSVKRATKKTVVEI---SEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEE 130

Query: 53  KKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDS 87
           +K +KK +K+++ + + E  E      E +  E+S
Sbjct: 131 EKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEES 165

Length = 581

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E ++ +E++ +E E    E E K KE++EE+K K ++++ K  ++ +K+ ++  +E + K
Sbjct: 527 ELERELEQKAEEAEALLKEAE-KLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE-AKK 584

Query: 70  EIEESLKERKEKTLTEDSQ 88
           E +E +KE ++      + 
Sbjct: 585 EADEIIKELRQLQKGGYAS 603

Length = 782

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 8    AGEKKKRIEKRNKEEEK---EENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
            A E KK  E + K EE    +E +++ +E +  +E K K ++ KKK  + KK  + KKK 
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512

Query: 65   EQSVKEIEESLKERKEKTLTEDSQCD 90
            ++  K+ EE+ K  + K   E  + D
Sbjct: 1513 DE-AKKAEEAKKADEAKKAEEAKKAD 1537

Length = 2084

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 15/82 (18%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEE----KNKKKKKKKKKKKKKKK---------KKKKK 62
              + EEE ++    E  + + E      + K+K K ++ K+K++K         K+ KK
Sbjct: 245 SDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304

Query: 63  KEEQ--SVKEIEESLKERKEKT 82
           K  Q   +KEI + + ++++  
Sbjct: 305 KLAQLARLKEIAKEVAQKEKAR 326

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
           EE ++E ++  KE E+ E  K KK+KK+KK+KK  +K  KKK  + +    +++ K+   
Sbjct: 93  EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152

Query: 81  KT 82
           K 
Sbjct: 153 KK 154

Length = 158

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 42.1 bits (100), Expect = 4e-04
 Identities = 13/71 (18%), Positives = 38/71 (53%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
            +      + KK  +K+   + K++  + +  +     +  K +++++ +++++KKKKK+
Sbjct: 107 AEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQ 166

Query: 62  KKEEQSVKEIE 72
           K  E+  +E+ 
Sbjct: 167 KPTEKIPREVV 177

Length = 746

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKK 52
            +  G  +K+ +IE  + E E E    +++E++ ++       KKKK  K
Sbjct: 801 PKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYK 850

Length = 926

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKE-KEDVEEEKNKKKKKKKKKKKKKKKK-----KKKKKE 64
           KK   +    E+++   +  +KE ++    EK  K+ ++  K+ ++K+K     K K+  
Sbjct: 71  KKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA 130

Query: 65  EQSVKEIEESLKERKEK 81
           E   K   E+ K+ KE+
Sbjct: 131 EAKAKAEAEAEKKAKEE 147

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
           KE+++   E EEKE    ++EK +KK+KK  +K  KKK  K  K        + + K+ +
Sbjct: 97  KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEE 156

Query: 80  EK 81
            K
Sbjct: 157 GK 158

Length = 158

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 23/92 (25%), Positives = 45/92 (48%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
            ++     +++K+ E +  EE +E  E ++ +  + +EE  K+  K  K K + KK +  
Sbjct: 415 SEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDL 474

Query: 62  KKEEQSVKEIEESLKERKEKTLTEDSQCDTMI 93
            KE + VK +E+       + L E SQ ++  
Sbjct: 475 LKETKLVKLLEQLELLLLRQKLEEASQKESKA 506

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 19/74 (25%), Positives = 42/74 (56%)

Query: 15  IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
            E+    +  +EN++EEKEK+  EEE     K++++ K +  K +++K +++   +  E 
Sbjct: 263 KEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 322

Query: 75  LKERKEKTLTEDSQ 88
             ++ EK L ++ +
Sbjct: 323 ELKKLEKELKKEKE 336

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           ++++ IE   +E EKEE    +  KE+ EEEK KK ++++ K   K++++ K +  +  +
Sbjct: 249 DEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 308

Query: 70  EIEESLKERKE 80
              +  ++ KE
Sbjct: 309 RKVDDEEKLKE 319

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
           +K+ + E K++   E K+K   E +    K   + K   +K    K  E+ +  +    +
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAEV 259

Length = 387

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE-SLKER 78
           K  E EE  + E+       E  K  K K++   ++    +   E ++    EE +L   
Sbjct: 261 KTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAHNRFEEVNLGLT 320

Query: 79  KEKTLTEDSQC 89
           KE+ +TE  +C
Sbjct: 321 KEQAMTEAKRC 331

Length = 752

>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/72 (26%), Positives = 40/72 (55%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            + KR++K     E   + + + + +   + +    + K+KKK+KKK++KKKK+ E+  +
Sbjct: 291 YQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEE 350

Query: 70  EIEESLKERKEK 81
            IE+   +  +K
Sbjct: 351 RIEKLEVQATDK 362

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E KK+  ++  +     +   +   +  E +  KKK K   K    K   KKK +     
Sbjct: 43  ESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK----D 98

Query: 70  EIEESLKERKEKTLTED 86
           E++ S K  K+  L +D
Sbjct: 99  ELDSSKKAEKKNALDKD 115

Length = 509

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 5/79 (6%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVE---EEKNKKKKKKKKKKKKKKKKKKKKKE 64
            A E KK+ E++ K +E ++  +E K+ ++ +   EE  K ++ KKK ++ KK  + KKK 
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKA 1479

Query: 65   EQSVK--EIEESLKERKEK 81
            E++ K  E ++  +E K+K
Sbjct: 1480 EEAKKADEAKKKAEEAKKK 1498

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK+ ++  K EE ++ ++ +K +E  + ++ KK ++KKK  + KK ++ KK EE  
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE-- 1562

Query: 68   VKEIEESLKERKEKTL 83
             K+ EE+ K  ++K +
Sbjct: 1563 KKKAEEAKKAEEDKNM 1578

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 19/100 (19%)

Query: 8    AGEKKKRIEKRNKEEEKEENE---------------QEEKEKEDVEEEKNKKKKKKKKKK 52
            A E KK  E    E E   +E               +E K+K D  ++K ++KKK  + K
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397

Query: 53   KKKKKKKKK----KKEEQSVKEIEESLKERKEKTLTEDSQ 88
            KK ++ KKK    KK   + K+ +E+ K+ +EK   ++++
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437

Length = 2084

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 39/56 (69%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           +K +++   +K+E++EE E+E + +E  EEE+  +  +K+  K K++K+++ ++++
Sbjct: 88  KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 21/76 (27%), Positives = 38/76 (50%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
             K   E+ +  +E   +EQEE E    E EK ++   +  K+ K+++K+KK +EE+   
Sbjct: 232 YLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKL 291

Query: 70  EIEESLKERKEKTLTE 85
             +E  + + E    E
Sbjct: 292 LAKEEEELKSELLKLE 307

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 10  EKKKRIEKRNKEE-EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
           + ++R +K + E   K E EQ+E  +E  EEEKN+++    KK KK KK K KK  
Sbjct: 296 DPEEREDKLSPEIPAKPEIEQDEDSEES-EEEKNEEEGGLSKKGKKLKKLKGKKNG 350

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 2   RKRRGGAGEKKKRIEKRNK--EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK 59
            K +  A  +KK  E+  K  EEE +     E +K+   E K K + + K K + K K K
Sbjct: 132 AKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK-AAEAKKKAEAEAKAKAEAKAKAK 190

Query: 60  ---KKKKEEQSVKEIEESLKERKEK 81
               K K E +  +       + E 
Sbjct: 191 AEEAKAKAEAAKAKAAAEAAAKAEA 215

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.9 bits (97), Expect = 7e-04
 Identities = 18/62 (29%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 13  KRIEKRNKE-EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
           +++EKR  + EE  + + E  EK + E EK +K+ ++K+++ +KK+++ ++  E+ ++E+
Sbjct: 85  QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144

Query: 72  EE 73
           E 
Sbjct: 145 ER 146

Length = 520

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 6   GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
            G+ EK+K+ ++R K+  +E     E   +  E +  + K K++ KK  +  + K+K E 
Sbjct: 164 AGSREKRKK-KERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL 222

Query: 66  QSVKEIEESLKERKEKTLTEDSQ 88
           +    +     +  E+ +    +
Sbjct: 223 EEENLLYLDYLKLNEERIDLLQE 245

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 22/72 (30%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 12  KKRIEKRNKEEEKEEN---EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
           KKRI+   KEEE+  +   E+E  +    EEE+ +K+K+++++ +   +++ +++E++  
Sbjct: 29  KKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQ 88

Query: 69  KEIEESLKERKE 80
           +E EE L+ER++
Sbjct: 89  EEYEERLQEREQ 100

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKK-------KKKKKKKKKKKKKKK 62
           E    IE+  +E E EE   EE+ +E    +KN  ++K       K+ + KK KK+ K +
Sbjct: 389 ENDAEIEELRRELEGEEESDEEENEE--PSKKNVGRRKFGPENGEKEAESKKLKKENKNE 446

Query: 63  KEEQSVKEIEESLKERKEKTLTE 85
            +E+   + EE L++ +E  + +
Sbjct: 447 FKEKKESDEEEELEDEEEAKVEK 469

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 14/64 (21%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E K +++ +  E++ ++ E   ++++     + +K K K  +KK+K + +K + +   V 
Sbjct: 105 EAKAKVQAQRAEQQAKKREAAGEKEK--APRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162

Query: 70  EIEE 73
           +I E
Sbjct: 163 DISE 166

Length = 213

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKED----VEEEKNKKKKKKKKKKKKKKKKKKKKK 63
            A E KK+ E+  K +E ++  +E K+K D      E K K  + KK ++ KK  + KK +
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531

Query: 64   EEQSVKEIEESLKERKEKTL 83
            E +   E +++ +++K   L
Sbjct: 1532 EAKKADEAKKAEEKKKADEL 1551

Length = 2084

>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 23/79 (29%), Positives = 45/79 (56%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E++++ EK+ +EE+  + E+E  E+E+ EE+K K KK K+   + +   K K    ++ K
Sbjct: 40  EEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPK 99

Query: 70  EIEESLKERKEKTLTEDSQ 88
           ++ +       K+LT D +
Sbjct: 100 DVTKEEYAAFYKSLTNDWE 118

Length = 529

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 5   RGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
                  K+ +   ++EE K      +K+K+   E+KN + KKK +KKKKKKK+KK+ K 
Sbjct: 29  SNVLVLSKEILSTFSEEENKVATTSTKKDKK---EDKNNESKKKSEKKKKKKKEKKEPKS 85

Query: 65  EQSVKEIEESLKERKEK 81
           E   K   ++ K+ K+ 
Sbjct: 86  EGETKLGFKTPKKSKKT 102

Length = 413

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK---------- 59
           E+ K++EK     ++++ + EE  K+   ++K  ++   K     K K +          
Sbjct: 101 ERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA 160

Query: 60  KKKKEEQSVKEIEESLKERKEK 81
           KK   E   K   E+ K+   +
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAE 182

Length = 387

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 8   AGEKKKRIEKRNKEE--EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           A E++K+ E++  EE  +K+  EQE  ++ + E    +++KK+ ++  K+   K+K+ EE
Sbjct: 77  AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136

Query: 66  QSVKEIEESLKERKEK 81
            + K    +  + + +
Sbjct: 137 AAAKAAAAAKAKAEAE 152

Length = 387

>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            +KKR   +N+E  K ENE++ +E  ++E EK    +++  +     + K+ +++ +S  
Sbjct: 141 IEKKRENNKNEERLKFENEKKLEESLELEREK---FEEQLHEANLDLEFKENEEQRESKW 197

Query: 70  EIEESLKERKE 80
            I + LK R E
Sbjct: 198 AILKKLKRRAE 208

Length = 438

>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987)

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
           +E E+E  E+ E+E ++ E EK   + +KK  +KK KK  KK K EE   +E+ E   E 
Sbjct: 64  EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123

Query: 79  KEK 81
            E 
Sbjct: 124 PEP 126

A family of uncharacterized proteins found by clustering human gut metagenomic sequences. Length = 379

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 9e-04
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 11/83 (13%)

Query: 10   EKKKRIEKRNKEEEKEENEQ----EEKEKEDVE-----EEKNKKKKKKKKKKKKKKKKKK 60
             K K  E +  EEEK++ EQ    E +EK+  E     EE+NK K  ++ KK ++ KKK 
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 61   K--KKEEQSVKEIEESLKERKEK 81
            +  KK E+  K+  E+LK+  E+
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEE 1700

Length = 2084

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 21 EEEKEENEQEEKEKED-VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
                     KE      EE+NK      KK KK+ K  + KK+ +  K+ ++  KE K
Sbjct: 25 SYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84

Query: 80 EKTLTEDSQ 88
           +  T+   
Sbjct: 85 SEGETKLGF 93

Length = 413

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 14/74 (18%), Positives = 39/74 (52%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
              R    +K  + +K  K ++K+   +  +  +  +  K +++++ +++++KKKKK+K 
Sbjct: 109 AAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKP 168

Query: 62  KKEEQSVKEIEESL 75
            ++      I E++
Sbjct: 169 TEKIPREVVIPETI 182

Length = 746

>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 16/88 (18%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
                E      E ++ E +++E  D EE+  KKK KKK+++K                 
Sbjct: 151 DSDNKEAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRK-------------PEST 197

Query: 71  IEESLKERKEKTLTEDSQCDTMIPVFKK 98
           +E++ +    K L  +   D   P+FKK
Sbjct: 198 LEKNFEALNVKKLDLEFAVD---PLFKK 222

This family consists of several Barren protein homologues from several eukaryotic organisms. In Drosophila Barren (barr) is required for sister-chromatid segregation in mitosis. barr encodes a novel protein that is present in proliferating cells and has homologues in yeast and human. Mitotic defects in barr embryos become apparent during cycle 16, resulting in a loss of PNS and CNS neurons. Centromeres move apart at the metaphase-anaphase transition and Cyclin B is degraded, but sister chromatids remain connected, resulting in chromatin bridging. Barren protein localises to chromatin throughout mitosis. Colocalisation and biochemical experiments indicate that Barren associates with Topoisomerase II throughout mitosis and alters the activity of Topoisomerase II. It has been suggested that this association is required for proper chromosomal segregation by facilitating the decatenation of chromatids at anaphase. This family forms one of the three non-structural maintenance of chromosomes (SMC) subunits of the mitotic condensation complex along with Cnd1 and Cnd3. Length = 719

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKK-----KKKKKKKKKKKKKKE 64
           E  +   K   E E        K KE  + EK  KK K K     K K K K + K KK 
Sbjct: 61  EPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120

Query: 65  EQSVKEIEESLKERKEKTLTE 85
                    +   +  +  + 
Sbjct: 121 PSKTAAKAPAAPNQPARPPSA 141

Length = 244

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 20/68 (29%), Positives = 38/68 (55%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
            EE+ E     K+     ++  +K +KK++++KK+KKKK    +++  +E EE  K+ +E
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454

Query: 81  KTLTEDSQ 88
           K   E+  
Sbjct: 455 KEEEEEEA 462

Length = 482

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKKEEQ 66
            A E KK  E + K EE ++ ++ +K+ E+ +++ ++ KK  + KKK  + KK ++ K+  
Sbjct: 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525

Query: 67   SVKEIEESLKERKEKTLTEDSQCD 90
              K+ EE+ K  + K   E  + D
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKAD 1549

Length = 2084

>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381)

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 19/56 (33%), Positives = 39/56 (69%), Gaps = 2/56 (3%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKK--KKKKKKKKKKKKK 63
           +KK++ E+  +E E EE ++EE+  E +E+E  K K++K++  ++K+K+  K++ K
Sbjct: 97  DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 156 to 174 amino acids in length. This domain is found associated with pfam07780, pfam01728. Length = 154

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 11/92 (11%)

Query: 1   MRKRRGGAGEKKKRIEKRNK-EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK- 58
             K+R     ++K +E+R   E+  ++ EQ  K+ E+ +++  + K K+  + K K +  
Sbjct: 80  AEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139

Query: 59  ---------KKKKKEEQSVKEIEESLKERKEK 81
                    KK+ +EE   K   E+ K+  E 
Sbjct: 140 AEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEA 171

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           +KK   K+ +E +K+  +Q E+ ++    E+ ++K+ +++   +K  K   + E+ + K+
Sbjct: 58  QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAK---QAEQAA-KQ 113

Query: 71  IEESLK---ERKEKTLTE 85
            EE  K   E K K   E
Sbjct: 114 AEEKQKQAEEAKAKQAAE 131

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 8   AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK--KKKEE 65
             +K+   E + K   + + +  E +K+   E K K + K K K ++ K K +  K K  
Sbjct: 147 EAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAA 206

Query: 66  QSVKEIEESLKERKEKTLTE 85
                  E+          E
Sbjct: 207 AEAAAKAEAEAAAAAAAEAE 226

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
            EE +++ +EE + E   E    + +   K  + K+K K ++ +E+  KE+E   KE K+
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQ 301

Query: 81  K 81
            
Sbjct: 302 L 302

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 26  ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKT 82
           E    + E+E+ EEE   + +++   + K + K+KKK+E    K  +E  K   +K 
Sbjct: 90  ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 24/59 (40%), Positives = 41/59 (69%), Gaps = 7/59 (11%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKK------KKKKKKKKKKKKKKKKE 64
           KK ++++ K+++K + E +E+ KE VE++K +++KK      K+K  KK KKKKK KK+
Sbjct: 145 KKALKRKEKQKKKSKKEWKER-KEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 4   RRGGAGEKKKRIEKRNK---EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           R+  A  K K  E+  K   EE K+E E  +KE     +E+  K + + +K+ ++++ + 
Sbjct: 25  RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84

Query: 61  KKKEEQSVKEIEESLKERKEK 81
           +K E++ + + EE+L  + E 
Sbjct: 85  QKLEKR-LLQKEENLDRKLEL 104

Length = 520

>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 20/75 (26%), Positives = 43/75 (57%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
               E+ NK       + ++++K +  ++K++KKKKKKK+KK+ K + + K   ++ K+ 
Sbjct: 40  STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99

Query: 72  EESLKERKEKTLTED 86
           +++ K+  +    ED
Sbjct: 100 KKTKKKPPKPKPNED 114

Length = 413

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E+KK  EKR  E ++EE  +EE+EK+  EEE+ +++++ +K++++ +K K     E+   
Sbjct: 30  ERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEE-- 87

Query: 70  EIEESLKERKEKTLTED 86
             ++   + +   L ED
Sbjct: 88  GTDKLSADEESNELLED 104

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEE--EKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
           E+K R++K  +EEEK E   +EKE  + EE  EK K +++K++K K ++++ +  +EE  
Sbjct: 753 EEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812

Query: 68  VKEIEESLKERKEKTLTEDSQ 88
            +      ++   +   +  +
Sbjct: 813 EEAELLEEEQLLIEQEEKIKE 833

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 14/45 (31%), Positives = 30/45 (66%)

Query: 37 VEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
          V+++K KK KK+K+K++K+ +K     +++  +  EE+  E+ E+
Sbjct: 12 VDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAER 56

This domain, found in various prokaryotic proteins, has no known function. Length = 177

>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355)

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 19/61 (31%), Positives = 38/61 (62%)

Query: 21 EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
          E E+E+   +++  + + +EK K +KK+++KK + +K  K   EE++  E+E+  KE +E
Sbjct: 1  EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60

Query: 81 K 81
           
Sbjct: 61 L 61

This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length. Length = 125

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKK-------KKKKKKKKKKKK 62
           E K +  K+ ++  KE   ++ + K  V+    K+   KK        KKK K+KK+KK+
Sbjct: 175 EVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKE 234

Query: 63  KEEQSVKEIEESLKERKEKTLTEDS 87
             E +VKE  E    +++  L ++S
Sbjct: 235 ASESTVKEESEEESGKRDVILEDES 259

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKK- 59
           + K R  A E++K+ E+  K+ + E+ +QEE+ ++   E+K K +  K K   +  K K 
Sbjct: 106 LEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKA 165

Query: 60  ---KKKKEEQSVKEIEESLKERKEK 81
               KKK E++ K  EE+  + +  
Sbjct: 166 AAEAKKKAEEAAKAAEEAKAKAEAA 190

Length = 387

>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 13  KRIEKRNKEEEKEENEQEEKEKEDVEE--EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           +R E R KEE   E E+  +E E  EE  E+  ++  KK   ++K   +  +KE +S K 
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKL 439

Query: 71  IEESLKERKEK 81
            +E+  E KEK
Sbjct: 440 KKENKNEFKEK 450

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 728

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 17/89 (19%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 8   AGEKKKRIEKRNKEEEKEENE---QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
           A +++  + ++ +E +           KE + V E + ++ +K + + KK  ++  K K+
Sbjct: 243 ADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKD 302

Query: 65  ---EQSVKEIEESLKERKEKTLTEDSQCD 90
                  +E + S KE ++K    ++Q  
Sbjct: 303 HKAFDLKQESKASEKEAEDK--ELEAQKK 329

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|222160 pfam13476, AAA_23, AAA domain

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 17/62 (27%), Positives = 40/62 (64%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERK 79
            +E  EE + + KEK++  EE  K+ ++ + +K   +K  ++K++++ ++E++E L+E  
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200

Query: 80  EK 81
           E+
Sbjct: 201 EE 202

Length = 204

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E + +IE+  KE +K E + E+ E E   E+K ++ +K K K   K  KK  KK + ++ 
Sbjct: 92  EIEAQIEELKKELKKLEEKIEQLEAE--IEKKEEELEKAKNKFLDKAWKKLAKKYDSNLS 149

Query: 70  EIEESLKER---KEKTLTE 85
           E  + L  +   KEK L E
Sbjct: 150 EALKGLNYKKNFKEKLLKE 168

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 16/75 (21%), Positives = 44/75 (58%)

Query: 9  GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
             ++   K N+ +E+++ ++E+ E E++E+E+  +  ++  + K ++ K +  K ++  
Sbjct: 11 ENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEEN 70

Query: 69 KEIEESLKERKEKTL 83
          K++E  L+  K++ L
Sbjct: 71 KKLENELEALKDRLL 85

Length = 211

>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK---KKKKKKKEEQSVKEIE 72
          ++  E  ++   ++   EDVE    K  KKKK   +KKK   K KKKKKE++ V E+ 
Sbjct: 25 KSTTESVDKVN-DDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELA 81

Length = 191

>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved region

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 17/74 (22%), Positives = 43/74 (58%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
            R     +++  IE++ +E+EK+E E+  KEK ++ EE+ +K+ + +K ++K + +K ++
Sbjct: 28  SRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQE 87

Query: 63  KEEQSVKEIEESLK 76
              +    +   ++
Sbjct: 88  TWHEHNLALANFIR 101

Members of this family have very varied localisations within the eukaryotic cell. pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing. memA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions. Length = 131

>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 22/79 (27%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKK--KKKKKKKKKKKKKKKKKKKEEQS 67
          +K  RI    ++ E++E E+EEKE+++ +E++  K   +K++++K+ ++ +K K K    
Sbjct: 6  DKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLAR 65

Query: 68 VKEIEESLKERKEKTLTED 86
            + E+  +E KE+   +D
Sbjct: 66 YADDEDYDEELKEQERWDD 84

This entry is characterized by proteins with alternating conserved and low-complexity regions. Bud13 together with Snu17p and a newly identified factor, Pml1p/Ylr016c, form a novel trimeric complex. called The RES complex, pre-mRNA retention and splicing complex. Subunits of this complex are not essential for viability of yeasts but they are required for efficient splicing in vitro and in vivo. Furthermore, inactivation of this complex causes pre-mRNA leakage from the nucleus. Bud13 contains a unique, phylogenetically conserved C-terminal region of unknown function. Length = 141

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 29  QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
           +E+K  + V +EK K+KK+KKKKKKKKKKK  KK 
Sbjct: 96  EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130

Length = 135

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 27 NEQEEKEKEDVEEEK-NKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
          NEQ ++ KE+++    +KK+ K   K +KKK+K++ K  +   K
Sbjct: 46 NEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89

Length = 330

>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 10 EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
          + K   +K N E   + N Q++  ++     K +  ++ KK   ++KK++KKK +++ V 
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVP 79

Length = 217

>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764)

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 13/72 (18%)

Query: 22 EEKEENEQEEKEKEDV-------EEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
          EEK+  + ++++ +D+       +++K +  K  + K  KK +KK KKK+E    E  E 
Sbjct: 2  EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEF--PEFPEE 59

Query: 75 LKERKEKTLTED 86
           K R+    TED
Sbjct: 60 SKRRR----TED 67

This is a family of eukaryotic proteins of unknown function. This family contains many hypothetical proteins. Length = 98

>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich region

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 24 KEENEQEEKEKEDVEEEKNKKKKKKKKKKKK--KKKKKKKKKEEQSVKEIEES 74
          KE + +E   K+  E  K + +K  KKKK+K  +KK K KKKEE+   +I E 
Sbjct: 2  KETSYEEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEH 54

This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Length = 151

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKK---------KKKKKKKKKKKKKKKKK 62
           K+   ++  ++  EE +++E+EKE  E E  ++          ++K ++  K++  K KK
Sbjct: 96  KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155

Query: 63  KEEQSVKEIEESLKERKEKTLTEDSQ 88
           +  +S         + +     E+++
Sbjct: 156 EAAESASSSLSGSAKPERNVSQEEAK 181

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 23/78 (29%), Positives = 41/78 (52%)

Query: 8    AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
            A E KK  E + K EE ++   E K+  + +++ ++ KK ++ KK  + KK ++ K+   
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538

Query: 68   VKEIEESLKERKEKTLTE 85
             K+ EE  K  + K   E
Sbjct: 1539 AKKAEEKKKADELKKAEE 1556

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 21/76 (27%), Positives = 47/76 (61%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            E K + E+  KE E+++ + EE +K++ E++K    KK+++KK ++ +K+K+   E+ + 
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786

Query: 70   EIEESLKERKEKTLTE 85
            E +E  +   +K + +
Sbjct: 1787 EEDEKRRMEVDKKIKD 1802

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 11   KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
            KKK  E + K +E ++  + +K+ ++ ++ +  KK  + KK ++ KK  + KK E+  K 
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548

Query: 71   IE----ESLKERKEKTLTEDSQ 88
             E    E LK+ +EK   E+++
Sbjct: 1549 DELKKAEELKKAEEKKKAEEAK 1570

Length = 2084

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 5/45 (11%)

Query: 27  NEQEEKEKEDVEEE-----KNKKKKKKKKKKKKKKKKKKKKKEEQ 66
            E+  K  E+++E+     K K+++KK +K+KKKKK+KKK K+ +
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRK 409

Length = 414

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 24  KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEK 81
           K+ N + EKE    +E+K K+K+  KK++   + ++++ KE    +  + + K R++K
Sbjct: 65  KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKE--KRTRKNREKK 120

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 27 NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
          NE+ +  KE +E     KK+ K  +K +KK +K K K E+   + EE 
Sbjct: 48 NEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 26/72 (36%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E+ +++EK  KE E+ + E EE EKE    E +K+K ++K ++ +++ ++ KK+ E+ ++
Sbjct: 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE-LE 279

Query: 70  EIEESLKERKEK 81
           E  + LKE KEK
Sbjct: 280 EKVKELKELKEK 291

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 23/81 (28%), Positives = 48/81 (59%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E++++   + +EEE+E++E   KEKE  EEE+  +K K +++K++K K ++++      +
Sbjct: 751 EEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEE 810

Query: 70  EIEESLKERKEKTLTEDSQCD 90
             EE+    +E+ L E  +  
Sbjct: 811 LKEEAELLEEEQLLIEQEEKI 831

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 13/52 (25%), Positives = 31/52 (59%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           +K   ++      E+ E + +E++ +  E EK +K++  + K+K++K ++KK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434

Length = 434

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 23  EKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
           +K  N +  K  E  +    +KK KK KKK+KK+K+K++ K+++   E  +SL
Sbjct: 176 QKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSL 228

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 15  IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEES 74
           +     + E +E +  E E+     +  KKK++K+K++KKKKKK    +   S    E+ 
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQP 313

Query: 75  LK 76
           ++
Sbjct: 314 VQ 315

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 19/84 (22%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKK---KKKKKKKK 57
           ++ ++    E+ K++EK   + ++++ + EE EK+   E+K ++++ +K   ++KKK + 
Sbjct: 92  LKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEA 151

Query: 58  KKKKKKEEQSVKEIEESLKERKEK 81
            K K   E +  +     K++ E+
Sbjct: 152 AKAKAAAEAAKLKAAAEAKKKAEE 175

Length = 387

>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           EK K ++ + K  +K     E       + +   ++  +K   + K+KKK+KKKEE+  K
Sbjct: 284 EKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKK 343

Query: 70  EIEESLKERKEK 81
           +IE  L+ER EK
Sbjct: 344 QIER-LEERIEK 354

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 12/99 (12%)

Query: 7   GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKK-KKKKKKKKKKKKKKEE 65
              E K+  E + +E EK    Q E +K D E  K K  K    K++ K  +K+ + KE 
Sbjct: 268 SPKEDKQVAENQKREIEKA---QIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKEL 324

Query: 66  QSVKEIEESLKE--------RKEKTLTEDSQCDTMIPVF 96
           ++ K+ E   ++          + T   +   D+  PV+
Sbjct: 325 EAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNPVY 363

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV- 68
            K        ++++  EN++ E EK  +E +KN ++  K K  K    K++ K  E+   
Sbjct: 261 PKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAE 320

Query: 69  KEIEESLKERKEKTLTEDSQ 88
            +  E+ K+R+   + ED Q
Sbjct: 321 DKELEAQKKREP--VAEDLQ 338

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
           + RI +    EE++  +Q  KEK   +++K KKKKKKKKKKK  KK  KKKK
Sbjct: 86  RDRIVRAFLVEEQKIVKQVLKEKA--KQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 2  RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
          ++++   GE    +   N E+ KE  E+ +    D +E K   K +KKK+K++ K  K K
Sbjct: 31 QRKKSQKGEL--EVTNLN-EQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAK 87

Query: 62 KK 63
           K
Sbjct: 88 SK 89

Length = 330

>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 17/50 (34%), Positives = 30/50 (60%)

Query: 7  GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
          G  E   +I  ++K  EK +   + +  E V++  +++KK++KKK KKKK
Sbjct: 28 GNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77

Length = 217

>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein EssA

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query: 11 KKKRIEKRNKEEEKEENEQEEKEK-------EDVEEEKNKKKKKKKKKKKKKKKK--KKK 61
          K  R++K ++E+ +++  + E +K        + EEE NKKK  ++K+ +  +     + 
Sbjct: 18 KVDRLQKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSED 77

Query: 62 KKEEQSVKEIEESL 75
          K+   +VKE ++SL
Sbjct: 78 KEGNVAVKETKDSL 91

The WXG100 protein secretion system (Wss) is responsible for the secretion of WXG100 proteins (pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium tuberculosis or EsxA and EsxB in Staphylococcus aureus. In S. aureus, the Wss seems to be encoded by a locus of eight CDS, called ess (eSAT-6 secretion system). This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with the polytopic membrane protein EsaA, YukC (pfam10140) and YukAB, which is a membrane-bound ATPase containing Ftsk/SpoIIIE domains (pfam01580) called EssC in S. aureus and Snm1/Snm2 in Mycobacterium tuberculosis. Proteins homologous to EssA, YukC, EsaA and YukD seem absent from mycobacteria. Length = 145

>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 18 RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK--KKKKKEEQ 66
              EE EE++++    +     +  ++KKKKKKK KKK K    +KKE+ 
Sbjct: 14 NGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQM 64

This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with pfam08241. This family is made up of S-adenosylmethionine-dependent methyltransferases. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype. Length = 85

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/43 (44%), Positives = 35/43 (81%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
           K ++KEE ++E++EKE ++E+K  +K KK+++KKKK+ +K +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588

Length = 651

>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 18  RNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           +N E     +  E    +D   E  +K KKKKKK KK KK KK  K++
Sbjct: 73  QNGECHLTTSSGEPSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120

This contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis. Also present are peptides from a related tick species, Ixodes ricinus. They are characterized by a putative signal peptide indicative of secretion and conserved cysteine residues. Length = 120

>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM)

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 19/82 (23%), Positives = 47/82 (57%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E  K  ++ + EEE+EE+E+E +E ED+E+E+   + ++++++ ++     K  E++++ 
Sbjct: 41  EDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIN 100

Query: 70  EIEESLKERKEKTLTEDSQCDT 91
           +I  S ++   + L   +    
Sbjct: 101 DIFNSTQDDNAQNLISKNYKKN 122

This family consists of several Plasmodium falciparum SPAM (secreted polymorphic antigen associated with merozoites) proteins. Variation among SPAM alleles is the result of deletions and amino acid substitutions in non-repetitive sequences within and flanking the alanine heptad-repeat domain. Heptad repeats in which the a and d position contain hydrophobic residues generate amphipathic alpha-helices which give rise to helical bundles or coiled-coil structures in proteins. SPAM is an example of a P. falciparum antigen in which a repetitive sequence has features characteristic of a well-defined structural element. Length = 164

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 22  EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
           E + E   E  ++  V   K + K K K K K K  KK +++ ++ VK +E 
Sbjct: 75  EPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEP 126

Length = 246

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 15/72 (20%), Positives = 38/72 (52%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E+ + +E   +E E+   E +EK +   EE + ++   ++ ++   + ++ K++ E+ + 
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 70  EIEESLKERKEK 81
            + E L+E  E 
Sbjct: 369 ALLEELEELFEA 380

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 18/72 (25%), Positives = 38/72 (52%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E K++IE   +E E+ E   EE E+   E E+ K++ ++K     ++ ++  +   + + 
Sbjct: 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386

Query: 70  EIEESLKERKEK 81
           E+E  L E + +
Sbjct: 387 ELEAELAEIRNE 398

Length = 1163

>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function unknown]

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVE--EEKNKKKKKKKKKKKKKKKKK 59
              R   G+KK R E     E+  E  +      D +    K  KKK  ++ ++ K+ KK
Sbjct: 605 SMDRILHGQKK-RAEGAVVFEKPLEATENFNPWLDRKMRRIKRIKKKAYRRIRRDKRLKK 663

Query: 60  KKKKEEQSVKEIEESLKERKEK 81
           K  +EE + +    S K+R   
Sbjct: 664 KMPEEENTQENHLGSEKKRHGG 685

Length = 869

>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 20/72 (27%), Positives = 45/72 (62%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E K+R  +     E+E   QEE+   + EE+  +K ++++K++++++++ +K+KEE   +
Sbjct: 59  ELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEAR 118

Query: 70  EIEESLKERKEK 81
             EE+ + R E+
Sbjct: 119 AREEAERMRLER 130

The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171

>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 15  IEKRNKEEEKEENEQEEKEK-EDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
           +EK  ++E  +E+E++ K+  ED EE K ++ K+  + KKKK KK K+  +E  V+   +
Sbjct: 207 VEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHK 266

Query: 74  SLKERKEKTLTED 86
            L  R  K +T++
Sbjct: 267 PLWTRDPKDVTKE 279

Length = 701

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 13  KRIEKRNKEEEKE-EN---EQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
           K++ +   EEE+E E    E+ E+    +EEE   + + K+   +K+ + + ++++E+  
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELR 236

Query: 69  KEIEESLK---ERKEKTLTE 85
           K+ EE L+   ER+ +   +
Sbjct: 237 KKYEEKLRQELERQAEAHEQ 256

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 6   GGAGEK-KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
           G   E+    IEK +  E++ E + E  EK   E+EK KK+ +++ ++ K++++ KK + 
Sbjct: 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLEL 566

Query: 65  EQSVKEIEESLKERKEKTLTE 85
           E+  +E  ++LK+  E  + E
Sbjct: 567 EKEAQEALKALKKEVESIIRE 587

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947)

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 13  KRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKK----KKKKKKKKKKKKKKKEEQSV 68
           + ++ R K  + ++ E+E  ++   +E++  K+ KK    KK + KK   KKK  E +  
Sbjct: 89  QSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKS 148

Query: 69  KEIEESLKERKEKTLTED 86
           K+++++L+++++K   ++
Sbjct: 149 KQLDKALEKKRKKNAGKE 166

Family of eukaryotic proteins with unknown function. Length = 168

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ--- 66
             +K IE  N ++E+ E E EE E    + E      KK++ + + + ++ ++K E+   
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910

Query: 67  SVKEIEESLKERKEK 81
            +++  + L E K K
Sbjct: 911 QIEKKRKRLSELKAK 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 15/88 (17%), Positives = 40/88 (45%)

Query: 7   GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
            A + ++ +   N E +  +      E E  E  +  +K +K+ +  K++ ++ +K   +
Sbjct: 83  SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142

Query: 67  SVKEIEESLKERKEKTLTEDSQCDTMIP 94
           +   +EE + E +E+     S+ + +  
Sbjct: 143 AEARLEEEVAEIREEGQELSSKREELKE 170

Length = 239

>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 18/53 (33%), Positives = 33/53 (62%)

Query: 26  ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
            N QE   +E  +    ++K+KKK++ K K++K++  + E+  KE+ E LKE+
Sbjct: 337 PNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389

Length = 472

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 13/62 (20%), Positives = 34/62 (54%)

Query: 30  EEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTLTEDSQC 89
             +   + E  + +   K +K+ + ++++KK+KK+++ VK+ ++  K++KEK +      
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184

Query: 90  DT 91
             
Sbjct: 185 KK 186

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 20/71 (28%), Positives = 30/71 (42%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
            K +  A  KKK  E + K E + + + E K K   EE K K +  K K   +   K + 
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEA 215

Query: 62  KKEEQSVKEIE 72
           +    +  E E
Sbjct: 216 EAAAAAAAEAE 226

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESL 75
            ++ ++E  +E E++E  K   E+++ K+KK  +K  KKK  K  K   +++ K+     
Sbjct: 95  SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKK 154

Query: 76  KERK 79
           +E K
Sbjct: 155 EEGK 158

Length = 158

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 15/72 (20%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKE-DVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
           +  + + +  K  E+   E EE EK+   EE +  +++  +  ++    + + ++ E+  
Sbjct: 630 KAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689

Query: 69  KEIEESLKERKE 80
           +EI+++L++ KE
Sbjct: 690 EEIKKTLEKLKE 701

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 19/77 (24%), Positives = 45/77 (58%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
           K+  E +++  + E  + +++EK    E++ KK +K+ KK+K++ ++ +K+ +E  +K  
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353

Query: 72  EESLKERKEKTLTEDSQ 88
            E  +E + + L E  +
Sbjct: 354 AEEEEEEQLEKLQEKLE 370

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKK----KKKKKKKKKKKKKKKKEE 65
           EKK + E+     ++EE  + E  K +  +  +++K K    + KK +K+ KK+K++ EE
Sbjct: 281 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEE 340

Query: 66  QSVKEIEESLKERKEKTLTEDSQ 88
              +  E  +K   E+   E  +
Sbjct: 341 LEKELKELEIKREAEEEEEEQLE 363

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 24  KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
           +EE E  +   E+ E  K KKKKKKKK KK        +    S    E S    +    
Sbjct: 166 EEEVELLKARLEE-ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEA 224

Query: 84  TE 85
            +
Sbjct: 225 KK 226

It is vital for effective cell-replication that replication is not stalled at any point by, for instance, damaged bases. Rtf2 stabilizes the replication fork stalled at the site-specific replication barrier RTS1 by preventing replication restart until completion of DNA synthesis by a converging replication fork initiated at a flanking origin. The RTS1 element terminates replication forks that are moving in the cen2-distal direction while allowing forks moving in the cen2-proximal direction to pass through the region. Rtf2 contains a C2HC2 motif related to the C3HC4 RING-finger motif, and would appear to fold up, creating a RING finger-like structure but forming only one functional Zn2+ ion-binding site. Length = 254

>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 17  KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ-----SVKEI 71
           K N+ E+K+     +  +E+ E +K     +++KK   +K K+K ++EE      S    
Sbjct: 27  KPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENAT 86

Query: 72  E-ESLKERKEKTLTEDSQ 88
           E  ++K  K++  + + +
Sbjct: 87  ENNTVKATKKQLFSSEYE 104

Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions [Protein fate, Protein and peptide secretion and trafficking]. Length = 150

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 14/78 (17%), Positives = 33/78 (42%)

Query: 4   RRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKK 63
            +     K K      K++ + E +   ++ +   E K K +KK +   ++K   +KKK 
Sbjct: 177 AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKA 236

Query: 64  EEQSVKEIEESLKERKEK 81
             ++  +   +  +  E+
Sbjct: 237 AAKAKADKAAAAAKAAER 254

Length = 387

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 4/37 (10%)

Query: 37  VEEEK----NKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           VEE+K      K+K K+KK+KKKKKKKKKKK  +   
Sbjct: 95  VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131

Length = 135

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 19  NKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
           +KEE + E E++E  K        ++K+ +K KK+++KKKK+ +K E++     E  K +
Sbjct: 549 DKEELQREKEEKEALK--------EQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQ 600

Query: 79  KEKTLTEDSQCDTMIPV-FKKGV 100
           ++K    D   +T +P     G 
Sbjct: 601 EDKYSAFD---ETGLPTHDADGE 620

Length = 651

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 12/77 (15%), Positives = 40/77 (51%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
           ++ ++++ +E   +  E+     E  E    K+ + + +++K++ +KK ++K  Q ++  
Sbjct: 191 ERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQ 250

Query: 72  EESLKERKEKTLTEDSQ 88
            E+ +++ +  L   + 
Sbjct: 251 AEAHEQKLKNELALQAI 267

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 17  KRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE---QSVKEIEE 73
           ++  E++ E  E+  KE+E +++E  ++ ++ K++++ KK + +K+ +E      KE+E 
Sbjct: 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVES 583

Query: 74  SLKERKEK 81
            ++E KEK
Sbjct: 584 IIRELKEK 591

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 8   AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
             E K+ I      +   E  + +K  E++ EE  ++   K KKKK+KKK+  +K  
Sbjct: 386 LSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442

Length = 564

>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807)

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 16  EKRNKEEEKEENEQE---EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIE 72
           E+  KEE + E E E     +   V  E +  +K+ +++   +K+K  + KE +S K+  
Sbjct: 68  ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127

Query: 73  ESLKERKEK 81
              ++  +K
Sbjct: 128 GGTQDVVDK 136

This is a family of conserved fungal proteins of unknown function. Length = 169

>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal domain

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKK---KKKKKEEQSVKEIE 72
                 EE E+ + E   +    E + K K+K ++ K K KK+   K+K+KEE+ +K + 
Sbjct: 40  PGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALA 99

Query: 73  ESLKERKE 80
           E+ KER E
Sbjct: 100 EAEKERAE 107

This domain is found in a number of different types of plant proteins including NAM-like proteins. Length = 147

>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 19  NKEEEKEENEQE---------EKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
           + +  K  N +          E+EK +  +E  K  ++++ +K +K+ KK KK E  
Sbjct: 71  DIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127

The PcfK-like protein family includes the Enterococcus faecalis PcfK protein, which is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 137 and 257 amino acids in length. There are two completely conserved residues (D and L) that may be functionally important. Length = 136

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.0 bits (90), Expect = 0.004
 Identities = 22/80 (27%), Positives = 43/80 (53%)

Query: 1    MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
            +RK          R +   K EE  + ++ +K +E  + ++ KK ++KKK  + KKK ++
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313

Query: 61   KKKEEQSVKEIEESLKERKE 80
             KK +++ K+ EE+ K+   
Sbjct: 1314 AKKADEAKKKAEEAKKKADA 1333

Length = 2084

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
            +K+  K +K+   +  E++EKEKE     K KK+ +  K   K++K     +E
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKP---KVKKRHRDTKNIGKRRKPSGTSEE 434

Length = 434

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 11/47 (23%), Positives = 32/47 (68%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
            +++R E+  +++E+++ E+ E +   +  E+ +K ++K++KK+ +K
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 14/70 (20%), Positives = 39/70 (55%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           ++K + ++  ++  KE   + ++EK+  ++     + K+  K+  +K+K + +K+EQ  +
Sbjct: 276 KRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKE 335

Query: 70  EIEESLKERK 79
             E+   +R+
Sbjct: 336 RGEKKKLKRR 345

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)

Query: 10  EKKKRIEKR--NKEEEKEENEQEEKEKEDVEEEKNK-------KKKKKKKKKKKKKKKKK 60
            +KK++E+   +K  E EE E+  K     E  K K       K  K+K+K+KKK KK+ 
Sbjct: 103 ARKKKLEELDEDKAAEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEW 162

Query: 61  KKKEEQSVKEIEESLKERKE 80
           K+++E+  K+  E  K+R+E
Sbjct: 163 KERKEKVEKKKAERQKKREE 182

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            K   +  KE  +++ + +EDVE  +++ +KK+K K++ KKKK K+ K  +++K
Sbjct: 220 FKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 10  EKKKRIEKRNKEEEKEENEQEE--------KEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           E K+ +E + K  E+ +              +  + +  K K K   K    K   KKK 
Sbjct: 37  EIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKL 96

Query: 62  KKEEQSVK--EIEESLKERKEKTLTEDSQ 88
           K E  S K  E + +L +  +    +D  
Sbjct: 97  KDELDSSKKAEKKNALDKDDDLNYVKDID 125

Length = 509

>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 5  RGGAGEKKKRIEKRNKEEEKEE-NEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
          +  A + K   E  NK   +++  E+ +   +    E+ KK   ++KK++KKK KKKK
Sbjct: 20 KYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77

Length = 217

>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
           E     E  +   ++ + K+ +EE + +  ++   K KKKK+KKK+  E+
Sbjct: 391 EAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440

Length = 564

>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 10  EKKKRIEKRNKEEEKEENEQE------EKEKEDVEEEKNKKK-----------KKKKKKK 52
           E +K +E+  +E EK  +E E         K  + E K +             ++ K + 
Sbjct: 515 EVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEA 574

Query: 53  KKKKKKKKKKKEEQSVKEIEESLKERKEKTLTE 85
             + K  KKKK        E +LK++K K L E
Sbjct: 575 VDEVKFLKKKKGILDAGAFESTLKDKKNKVLPE 607

Length = 753

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 19/76 (25%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEK--EKEDVEEEKNKKKKKKKKK--KKKKKKKKKKKKEE 65
           + +  +E+  KE   E    E +  ++E+  + K +   KK++   KK+K+   K+K  +
Sbjct: 62  KLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLD 121

Query: 66  QSVKEIEESLKERKEK 81
           +  +E+EE + E++E+
Sbjct: 122 EKEEELEELIAEQREE 137

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
KOG3618|consensus	1318		99.9
KOG3619|consensus	867		99.39
KOG2422|consensus	665		93.94
KOG0112|consensus	975		93.89
KOG4364|consensus	811		93.0
KOG3619|consensus	867		92.89
KOG0345|consensus	567		91.53
PF06375	154	BLVR: Bovine leukaemia virus receptor (BLVR); Inte	91.18
KOG2412|consensus	591		91.16
KOG4364|consensus	811		90.68
PF11600	216	CAF-1_p150: Chromatin assembly factor 1 complex p1	89.77
KOG4055|consensus	213		87.69
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	87.42
PF06658	142	DUF1168: Protein of unknown function (DUF1168); In	86.89
KOG0338|consensus	691		86.23
PTZ00121	2084	MAEBL; Provisional	84.4

>KOG3618|consensus

Probab=99.90  E-value=6.4e-23  Score=212.36  Aligned_cols=264  Identities=14%  Similarity=0.172  Sum_probs=189.9

Q ss_pred             cCHHhHHHHHHHhhhhccCc----cccccccccc-cccccccccccccCccCcCCCcchHHhHHHHHHHHhhhHHHHHHH
Q psy17567         66 QSVKEIEESLKERKEKTLTE----DSQCDTMIPV-FKKGVLYKGIYCPSLTNSFREPSLEMSYQRYSHRQRQKSLIIVNL  140 (362)
Q Consensus        66 ~~~~~~~~~l~e~~~~~lt~----~~~~~~~~~~-f~~g~~~~g~~~p~L~~kF~s~~LE~LYq~Y~~r~~q~sL~v~~~  140 (362)
                      ++.+++...+.|..+.+.++    .+||++++|. |++ +.+| |    ++++|+|..||+.|+.-.+.|-|...--- +
T Consensus        13 ~~t~~v~~~~~Psi~s~~Ss~gRR~~~~~~~lP~~FER-Asar-W----wdPkFdS~~LEeqy~~~~Fpq~r~RfR~~-L   85 (1318)
T KOG3618|consen   13 GDTNSVRVKINPSISSSCSSSGRRVGGGGRLLPQLFER-ASAR-W----WDPKFDSVNLEEQYLERCFPQTRRRFRYA-L   85 (1318)
T ss_pred             CCCcccceeeCcchhhhcCCCCcccCCCcccchHHHHH-hhhh-h----cCccCCcchHHHHHHHhhCHHHHHHHHHH-H
Confidence            78899999999999998876    4999999996 998 4445 3    78999999999999999888766554322 2


Q ss_pred             HHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHHHHHhhhhhhhhhhh
Q psy17567        141 VDMVLKAVLTVAWISYNEVELSQIDSTKLTWTVYTMMSNLAMCLLG-WWRCFANNYLQWAAVGTWILLNTQGWWRCFANN  219 (362)
Q Consensus       141 l~ill~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~l~L~vl~-~~~~~~~~~l~~~~~~~wi~l~t~~~~~c~~~~  219 (362)
                      ..|.+++.++.+|+..+...+   ....+....|.+.+..++++++ +++.+.+.| .|.+++.-+++       |    
T Consensus        86 ~YI~~~~l~W~lYfav~~rs~---fi~~~~~slc~lslv~~mf~~ft~~~lY~rhy-~~TS~~~tlLv-------c----  150 (1318)
T KOG3618|consen   86 FYIGFACLLWSLYFAVHMRSR---FIVMVAPSLCFLSLVCVMFFLFTFTKLYARHY-AWTSLALTLLV-------C----  150 (1318)
T ss_pred             HHHHHHHHHHHHHheeccCce---eeeehHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH-------H----
Confidence            578889999999987665332   2222223333333333444443 677665555 67766522221       2    


Q ss_pred             hhhhhhhHHHHhhhhhhhhcccc-ccCCccchhHHHHHHHHHHhcccccchHHHHHhhhhhHHHHHHHHHHHHh---ccC
Q psy17567        220 YLQWAAVGTWILLNTQGFISQGI-GLNNKEYLIWYILFIVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKL---HRG  295 (362)
Q Consensus       220 yl~~~~~~~~v~~~~q~~~~~~~-~~~~~~~~~w~~lfiIf~iYtmLPl~l~~ail~g~~~Sl~hliv~~~~~~---~~~  295 (362)
                            ..++..     +.+++. .+-++-.....++-++++|||.+|+|++.++.+|+..|+.+-++...+.-   +..
T Consensus       151 ------~~tLa~-----ltat~r~af~spvgsfa~c~evvlLiYTv~plPLyL~~~~gi~YSilFE~~~~~~ig~~~~~~  219 (1318)
T KOG3618|consen  151 ------ALTLAN-----LTATARPAFLSPVGSFAMCIEVVLLIYTVMPLPLYLSLCLGIAYSILFETFGYHFIGEACFPS  219 (1318)
T ss_pred             ------HHHHHH-----hhhccchhhhCchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhhhccccccccC
Confidence                  111111     111222 22122334555778899999999999999999999999998876432110   001


Q ss_pred             CCCchhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q psy17567        296 PLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM  362 (362)
Q Consensus       296 ~~~~~~~~ql~an~ll~lc~NliG~~~~~l~e~~qR~aFLetrq~i~~rl~Le~E~~qQErLLLSVL  362 (362)
                      +....+-+.++..++++.|+|++|++..+|+.+++|++||+..|++..|..||.|+|-+|++++||+
T Consensus       220 e~aG~~~~~l~~r~~lH~~vHliGVHlfim~qVR~R~TFlKVGQs~l~rkdLE~EkqlKe~MIhSVM  286 (1318)
T KOG3618|consen  220 EGAGALHWELLSRGLLHGCVHLIGVHLFIMSQVRSRSTFLKVGQSILHRKDLEVEKQLKERMIHSVM  286 (1318)
T ss_pred             cccCchhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhHHHhhHHHHhhhhhHHHHHHHHHHHHhhc
Confidence            1222456789999999999999999999999999999999999999999999999999999999996

>KOG3619|consensus

Probab=99.39  E-value=4.4e-13  Score=144.43  Aligned_cols=65  Identities=40%  Similarity=0.654  Sum_probs=62.7

Q ss_pred             CchhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q psy17567        298 SPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAFLETHRSTETRMKTQKENDQQEKLLLSGM  362 (362)
Q Consensus       298 ~~~~~~ql~an~ll~lc~NliG~~~~~l~e~~qR~aFLetrq~i~~rl~Le~E~~qQErLLLSVL  362 (362)
                      +...+.|+++|+++|+|+|++|+|++||+|++||++|+|||+||++|+++|.|++||||||+|||
T Consensus        13 ~~~~~~ql~an~~~~~~~nl~G~~~~~~~e~~~r~~f~~~~~~i~~r~~l~~~~~~qerlllsvl   77 (867)
T KOG3619|consen   13 DVLLLNQLLANAVLFLCINLVGIFTKYMMERAQRQAFLETRKCIEVRMELETEKQQQERLLLSVL   77 (867)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45678899999999999999999999999999999999999999999999999999999999997

>KOG2422|consensus

Probab=93.94  E-value=0.017  Score=60.72  Aligned_cols=15  Identities=20%  Similarity=0.016  Sum_probs=8.3

Q ss_pred             cCHHhHHHHHHHhhh
Q psy17567         66 QSVKEIEESLKERKE   80 (362)
Q Consensus        66 ~~~~~~~~~l~e~~~   80 (362)
                      .+||+-..+|+-.+.
T Consensus       113 s~deq~~a~l~~~k~  127 (665)
T KOG2422|consen  113 SDDEQKLAILKYGKT  127 (665)
T ss_pred             CchHHHHHHHHhhcc
Confidence            455566666655544

>KOG0112|consensus

Probab=93.89  E-value=0.031  Score=61.08  Aligned_cols=10  Identities=30%  Similarity=0.481  Sum_probs=5.0

Q ss_pred             ccccccCccC
Q psy17567        103 KGIYCPSLTN  112 (362)
Q Consensus       103 ~g~~~p~L~~  112 (362)
                      +|+..|.|+.
T Consensus       827 k~v~~~ll~e  836 (975)
T KOG0112|consen  827 KGVIISLLKE  836 (975)
T ss_pred             cchhhhhhhc
Confidence            4455555554

>KOG4364|consensus

Probab=93.00  E-value=0.13  Score=54.73  Aligned_cols=10  Identities=10%  Similarity=-0.044  Sum_probs=6.0

Q ss_pred             cccccccccc
Q psy17567         86 DSQCDTMIPV   95 (362)
Q Consensus        86 ~~~~~~~~~~   95 (362)
                      .++|..+.|+
T Consensus       393 ~~s~~~f~pF  402 (811)
T KOG4364|consen  393 TVSDIRFEPF  402 (811)
T ss_pred             cccccccccc
Confidence            3566666664

>KOG3619|consensus

Probab=92.89  E-value=4.6  Score=45.14  Aligned_cols=105  Identities=11%  Similarity=-0.008  Sum_probs=61.2

Q ss_pred             HHHHHhcccccchHHHHHhhhhhHHHHHHHHHHHHhc--cCCCCchhhhhHHHHHHHHHHhhhhhhhhhhhhhHHhHHHH
Q psy17567        257 IVFVTYAMLPLPLKWCFIGGCTTSVLHVIITAQIKLH--RGPLSPCSVHEMGALCLVYIGINSAGMYTKYLTDRGQRRAF  334 (362)
Q Consensus       257 iIf~iYtmLPl~l~~ail~g~~~Sl~hliv~~~~~~~--~~~~~~~~~~ql~an~ll~lc~NliG~~~~~l~e~~qR~aF  334 (362)
                      .+.++++++++|...-.++-.+....|.++.......  ..+..+..-...... ++++-+-++=.++....|+.-|--|
T Consensus       519 ~~i~~~vf~rl~~~~k~llll~~~~~y~~l~~~~~~~~~~~~~~~~~~~k~~~~-i~l~lf~l~l~~~~Rq~E~~~RlDF  597 (867)
T KOG3619|consen  519 GLLSTAVFLRLPFMLKLLLLLIVFAAYGLLIELSYARELDEEPLPYMGLKLMLS-ILLSLFLLALLLHARQVEYTARLDF  597 (867)
T ss_pred             HHHHHHheeeccHHHHHHHHHHHHHHHHhheeeeeccccCCCCccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455788889985444433333444444432111010  011111111122222 3333333445667788999999999


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhhcC
Q psy17567        335 LETHRSTETRMKTQKENDQQEKLLLSGM  362 (362)
Q Consensus       335 Letrq~i~~rl~Le~E~~qQErLLLSVL  362 (362)
                      +=.-|..+++-..|.=.+..++||..||
T Consensus       598 LWk~q~~~E~ee~e~m~~~Nr~LLeNiL  625 (867)
T KOG3619|consen  598 LWKVQAQEEKEEMETMQNLNRLLLENIL  625 (867)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999888877788888888775

>KOG0345|consensus

Probab=91.53  E-value=0.42  Score=49.58  Aligned_cols=7  Identities=0%  Similarity=0.017  Sum_probs=3.2

Q ss_pred             cCHHhHH
Q psy17567         66 QSVKEIE   72 (362)
Q Consensus        66 ~~~~~~~   72 (362)
                      |+||++|
T Consensus       539 e~e~~~~  545 (567)
T KOG0345|consen  539 EEEELAD  545 (567)
T ss_pred             hhHHHHH
Confidence            3444444

>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected

Probab=91.18  E-value=0.062  Score=47.83  Aligned_cols=6  Identities=33%  Similarity=0.495  Sum_probs=0.0

Q ss_pred             cCHHhH
Q psy17567         66 QSVKEI   71 (362)
Q Consensus        66 ~~~~~~   71 (362)
                      +||||+
T Consensus       108 e~~ed~  113 (154)
T PF06375_consen  108 ESDEDI  113 (154)
T ss_dssp             ------
T ss_pred             cccccc
Confidence            566655

It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.

>KOG2412|consensus

Probab=91.16  E-value=0.24  Score=51.81  Aligned_cols=30  Identities=23%  Similarity=0.534  Sum_probs=20.7

Q ss_pred             cccCCCchhhhhhHHHhhhHHHHHhhHHHH
Q psy17567          2 RKRRGGAGEKKKRIEKRNKEEEKEENEQEE   31 (362)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~e~e~~e~~   31 (362)
                      ++|++..+|++.|||++|++++|++.+.++
T Consensus       213 ~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d  242 (591)
T KOG2412|consen  213 RERKERSEEKREEAERKRRAHQEELRQKED  242 (591)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            456777788888888887776665544443

>KOG4364|consensus

Probab=90.68  E-value=0.36  Score=51.62  Aligned_cols=17  Identities=6%  Similarity=-0.087  Sum_probs=7.6

Q ss_pred             hHHHHHHHHHHhhhhhh
Q psy17567        304 EMGALCLVYIGINSAGM  320 (362)
Q Consensus       304 ql~an~ll~lc~NliG~  320 (362)
                      +|+++.+=+.-+|..|+
T Consensus       655 alm~ql~pl~hgn~ns~  671 (811)
T KOG4364|consen  655 ALMVQLFPLSHGNENSI  671 (811)
T ss_pred             HHHHHHhhhhcccccch
Confidence            34444444444444443

>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair []

Probab=89.77  E-value=1.3  Score=41.34  Aligned_cols=11  Identities=18%  Similarity=0.486  Sum_probs=7.2

Q ss_pred             ccccccccccc
Q psy17567         86 DSQCDTMIPVF   96 (362)
Q Consensus        86 ~~~~~~~~~~f   96 (362)
                      ++.|..+.|||
T Consensus       199 ~~~~~~f~pF~  209 (216)
T PF11600_consen  199 SDYEKKFLPFF  209 (216)
T ss_pred             chhhccccCce
Confidence            45566677776

P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].

>KOG4055|consensus

Probab=87.69  E-value=1.2  Score=40.75  Aligned_cols=28  Identities=50%  Similarity=0.686  Sum_probs=12.0

Q ss_pred             hhhhhHHHHhhhhhhHHHHHHHHHhhhh
Q psy17567         33 EKEDVEEEKNKKKKKKKKKKKKKKKKKK   60 (362)
Q Consensus        33 ~~e~~~~e~~~~~~~~~~~~k~~~~~~~   60 (362)
                      +.+...+|+-.++..|++|+|+++++++
T Consensus       118 k~~kaaEeKTaKKRaKRqk~Kq~akkkk  145 (213)
T KOG4055|consen  118 KNQKAAEEKTAKKRAKRQKKKQKAKKKK  145 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333333443444344555555443333

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=87.42  E-value=0.55  Score=46.48  Aligned_cols=17  Identities=41%  Similarity=0.554  Sum_probs=8.2

Q ss_pred             hhhhhHHHhhhHHHHHh
Q psy17567         10 EKKKRIEKRNKEEEKEE   26 (362)
Q Consensus        10 ~~~~~~~~~~~~~~e~e   26 (362)
                      |-++++++.|+++.++-
T Consensus       255 e~~~K~~k~R~~~~~~~  271 (321)
T PF07946_consen  255 EAKKKAKKNREEEEEKI  271 (321)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455555555544433

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function

Probab=86.89  E-value=1  Score=39.67  Aligned_cols=41  Identities=27%  Similarity=0.379  Sum_probs=18.0

Q ss_pred             CCCchhhhhhHHHhhhHHHHHhhHHHHhhhhhhHHHHhhhh
Q psy17567          5 RGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKK   45 (362)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~e~e~~e~~~~~e~~~~e~~~~~   45 (362)
                      |.++-++-+.-|+.-+++.++++=+.+-++...+++++..+
T Consensus        45 RRrE~~Rl~~me~~~~~e~~~~eF~~kree~~~~~eekTaK   85 (142)
T PF06658_consen   45 RRREYERLEYMEEEAKKEKEDEEFQRKREERKKEAEEKTAK   85 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555444444443333333333334444444

>KOG0338|consensus

Probab=86.23  E-value=0.17  Score=52.98  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=21.2

Q ss_pred             CcccCCCchhhhhhHHHhhhHHHHHhhHHHH
Q psy17567          1 MRKRRGGAGEKKKRIEKRNKEEEKEENEQEE   31 (362)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~e~e~~e~~   31 (362)
                      |+++|++++-...+.|+..+|++|.+++|.+
T Consensus       102 ~~~~k~~a~~~~~eeE~~~~E~eE~de~eDe  132 (691)
T KOG0338|consen  102 ARQRKPGAKSVSIEEEEEEKEGEEKDEEEDE  132 (691)
T ss_pred             HHhhCCCCCccchhhhhhcccccccccccch
Confidence            4677888777777777776666666655554

>PTZ00121 MAEBL; Provisional

Probab=84.40  E-value=1.6  Score=50.55  Aligned_cols=7  Identities=43%  Similarity=0.401  Sum_probs=2.6

Q ss_pred             Hhhhhcc
Q psy17567         77 ERKEKTL   83 (362)
Q Consensus        77 e~~~~~l   83 (362)
                      .+.+..+
T Consensus      1813 qrIQqNL 1819 (2084)
T PTZ00121       1813 GGKEGNL 1819 (2084)
T ss_pred             HHhhhcc
Confidence            3333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-12
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-06
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	2e-07
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	4e-07
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	4e-04
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	4e-07
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	6e-06
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	9e-06
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	1e-05
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	1e-05
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	3e-05
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	4e-05
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	4e-05
1b6a_A	478	Methionine aminopeptidase; angiogenesis inhibitor;	6e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
4ani_A	213	Protein GRPE; chaperone cycle, complementary assay	2e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	2e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	2e-04
1qy5_A	269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	5e-05
1qy5_A	269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	2e-04
1qy5_A	269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	3e-04
1qy5_A	269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	3e-04
1qy5_A	269	Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N	4e-04
2cg9_A	677	ATP-dependent molecular chaperone HSP82; chaperone	8e-05
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	2e-04
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	2e-04
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	3e-04
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	3e-04
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	7e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	3e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	3e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	5e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	5e-04
3kio_B	332	Ribonuclease H2 subunit B; aicardi-goutieres syndr	7e-04
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	7e-04
3err_A	536	Fusion protein of microtubule binding domain from	8e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 62.5 bits (151), Expect = 8e-12
 Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           +RK R    E++KR+++ +   +  E E  EK K+D+EE       +++ ++ +K K   
Sbjct: 87  IRKWRE---EQRKRLQELDAASKVMEQEWREKAKKDLEE-----WNQRQSEQVEKNKINN 138

Query: 61  KKKEEQSVKEIEESL 75
           +  ++   ++ +  +
Sbjct: 139 RIADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 51.7 bits (123), Expect = 4e-08
 Identities = 11/80 (13%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 14  RIEKRNKEEEKEENEQEEKEKE----DVEEEKNKKKKKKKKKK------KKKKKKKKKKK 63
           + ++  +E E     +EE+ K     D   +  +++ ++K KK      +++ ++ +K K
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 64  EEQSVKEIEESLKERKEKTL 83
               + + +   ++     +
Sbjct: 136 INNRIAD-KAFYQQPDADII 154

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 10/63 (15%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 26  ENEQEEKEKEDVEE--EKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKEKTL 83
           + ++  +E E + +  E+ +K+ ++     K  +++ ++K ++ ++E  +   E+ EK  
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 84  TED 86
             +
Sbjct: 136 INN 138

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
           +   +E E   K +E+ + ++ ++     K  +++ ++K KK  E+  +   E +++ K 
Sbjct: 78  DRLTQEPESIRKWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136

Query: 81  KTLTEDSQ 88
                D  
Sbjct: 137 NNRIADKA 144

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E++KR+++ +   +  E E  EK K+D+EE       +++ ++ +K K   +  ++   +
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEE-----WNQRQSEQVEKNKINNRIADKAFYQ 162

Query: 70  EIEESL 75
           + +  +
Sbjct: 163 QPDADI 168

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 8/73 (10%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           +K R E+R + +E +   +  +++   + +K+ ++  +++ ++ +K K   +  +     
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD----- 157

Query: 71  IEESLKERKEKTL 83
            +   ++     +
Sbjct: 158 -KAFYQQPDADII 169

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 21  EEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKERKE 80
           E  ++  E++ K  ++++      +++ ++K KK  ++  +++ EQ  K    +     +
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA--D 157

Query: 81  KTLTEDSQCDTM 92
           K   +    D +
Sbjct: 158 KAFYQQPDADII 169

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 6   GGAGEKKKRIEKRNKEEEKE-ENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
            G  E  K       E  ++ E    E ++ D ++E           KKKKKKKKK+  +
Sbjct: 51  AGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110

Query: 65  EQS 67
            Q+
Sbjct: 111 VQT 113

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 7  GAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
          G  E        N + + ++ E+      +   +K ++KKKK K      +++  K+   
Sbjct: 3  GVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGA 62

Query: 67 SVKEIEESLKERKEKTLTEDS 87
          SV E+   L+    +    D 
Sbjct: 63 SVDEVARQLERSALEDKERDE 83

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 6   GGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
               ++  +    + +E   + E+   E ++ +E+             KKKKKKKKK+ 
Sbjct: 50  AAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           + +   A  +++  ++     ++   + E    ED E +++ +           KKKKKK
Sbjct: 44  KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103

Query: 62  KKEE 65
           KK+ 
Sbjct: 104 KKKR 107

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
             K    AGE++   E     +E     +    ++   +E ++           KKKKKK
Sbjct: 44  KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103

Query: 61  KKKEEQSV 68
           KKK    V
Sbjct: 104 KKKRGPKV 111

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 9   GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEK-NKKKKKKKKKKKKKKKKKKKKKEEQS 67
            E    +++  ++ E+   E +E++++D + +        KKKKKKKKK+  K + +  S
Sbjct: 58  KESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPS 117

Query: 68  V 68
           V
Sbjct: 118 V 118

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 15/69 (21%), Positives = 29/69 (42%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           +K +G +   ++  +K +     E   Q E+   + +E     +           KKKKK
Sbjct: 43  KKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKK 102

Query: 62  KKEEQSVKE 70
           KK+++  K 
Sbjct: 103 KKKKRGPKV 111

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 16/84 (19%), Positives = 35/84 (41%)

Query: 8  AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQS 67
          AG ++      +   + + +++EE      EE   KK++KKKK K      +++  +E  
Sbjct: 2  AGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESG 61

Query: 68 VKEIEESLKERKEKTLTEDSQCDT 91
              E + +  +     ++   D 
Sbjct: 62 ASVDEVARQLERSALEDKERDEDD 85

>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 12/72 (16%), Positives = 29/72 (40%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
           RK++   G      ++ +KE     +E   + +    E+K + +  +           KK
Sbjct: 40  RKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKK 99

Query: 62  KKEEQSVKEIEE 73
           KK+++  +  + 
Sbjct: 100 KKKKKKKRGPKV 111

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 11/88 (12%), Positives = 26/88 (29%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           +     G      + + +N E    E +  E +          +  +       +  ++K
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968

Query: 61  KKKEEQSVKEIEESLKERKEKTLTEDSQ 88
                Q    ++ S +  K   L E  +
Sbjct: 969 DTFFAQQWTGVKSSAETYKNTLLAELER 996

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 10/72 (13%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKK-KKKKKKKKKKKKKKKKEEQSV 68
           E K    +R  +E+ +E +   ++  ++E   + + +K +   ++ +  +++ K     V
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986

Query: 69  KEIEESLKERKE 80
             ++E + + ++
Sbjct: 987 LSLQEEIAKLRK 998

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK-KKKKKKEEQSV 68
            KK +IE R+ E  K+ +   E +   ++ + +++ K+ K   +K    +     E + +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 69  KEIEESLKERKEKTLTEDSQCDTM 92
           +   E L+  +E+     ++  ++
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSL 989

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 34/79 (43%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            EK +   +R +  E+E      +     EE    +K+  + + +KK  ++   K +   +
Sbjct: 963  EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Query: 70   EIEESLKERKEKTLTEDSQ 88
            ++   LKE+     TE  +
Sbjct: 1023 QLVSELKEQNTLLKTEKEE 1041

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 14/70 (20%), Positives = 35/70 (50%)

Query: 12   KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
            + + EK+  EE  ++ + E ++     +E+N   K +K++  ++   + K+  E   K++
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 72   EESLKERKEK 81
             E  K+ +  
Sbjct: 1062 VEETKQLELD 1071

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 10   EKKKRIEKRNKEEEKEENE-QEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSV 68
            E+  ++ K   + + E+   +E  +K   E E+   + K++    K +K++  ++     
Sbjct: 991  EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 69   KEIEESLKERKEKTLTE 85
            KEI E+++++  +   +
Sbjct: 1051 KEITETMEKKLVEETKQ 1067

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 9   GEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKKEEQS 67
               KR  K+ K E +   E+ +K    +E +  + ++K  ++ K+ K   +K    E +
Sbjct: 899 RMMAKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957

Query: 68  VKEIEESLKERKEKTLTEDSQ 88
                E L+   E+    + +
Sbjct: 958 YSTETEKLRSDVERLRMSEEE 978

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK-KKEEQSV 68
            E++ +         +EE  +  KE    + EK   ++   K K + ++   + K++   +
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Query: 69   KEIEESLKERKEKTLTEDSQ 88
            K  +E L  R      E ++
Sbjct: 1036 KTEKEELNRRIHDQAKEITE 1055

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 10   EKKKRIEKRN---KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
             +KK IE+     K E ++   + +++   ++ EK +  ++   + K+  +  +KK  E+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064

Query: 67   SVKEIEESLKERKEK 81
              K++E  L + + +
Sbjct: 1065 -TKQLELDLNDERLR 1078

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 11/81 (13%), Positives = 45/81 (55%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           +  ++    E    +E R +EEE+   + + ++K+  ++  + +++ ++++  ++K + +
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 61  KKKEEQSVKEIEESLKERKEK 81
           K   +  +K++E+ +   +++
Sbjct: 978 KVTADGKIKKMEDDILIMEDQ 998

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 1    MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKK--------KK 52
              +R      +KK+++++   + +E+ E+EE  ++ ++ EK     K KK        + 
Sbjct: 939  EEERSQQLQAEKKKMQQQM-LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 53   KKKKKKKKKKKEEQSVKEIEESLKERKEK 81
            +  K  K++K  E+ V ++  +L E +EK
Sbjct: 998  QNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 15/80 (18%), Positives = 41/80 (51%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
            +    A E + R+  + +E E+  +E E + +E+ E  +  + +KKK +++    +++ 
Sbjct: 905 TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 62  KKEEQSVKEIEESLKERKEK 81
           ++EE + ++++        K
Sbjct: 965 EEEEAARQKLQLEKVTADGK 984

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 13/76 (17%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 10   EKKKRIEKRNKEEEKEENEQEEKE----KEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEE 65
            E +   E+   ++ + E ++ +++    +E +EEE+  ++K + +K     K KK + + 
Sbjct: 933  EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 66   QSVKEIEESLKERKEK 81
              +++    L + ++ 
Sbjct: 993  LIMEDQNNKLTKERKL 1008

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 10   EKKKRIEKRNKEEE-----KEENEQEEKEKEDVEEEKNK-KKKKKKKKKKKKKKKKKKKK 63
            EK     K  K E+     +++N +  KE++ +EE  +       ++++K K   K K K
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 64   EEQSVKEIEESLKERKEK 81
             E  + E+E  LK+ ++ 
Sbjct: 1037 HESMISELEVRLKKEEKS 1054

>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 32/83 (38%)

Query: 1  MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
          M +      E+    E   ++  +EE   + +E+      +    ++  +  +K    ++
Sbjct: 1  MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60

Query: 61 KKKEEQSVKEIEESLKERKEKTL 83
              +  + E+E  L E + + L
Sbjct: 61 LAAAKAQIAELEAKLSEMEHRYL 83

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 12/73 (16%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           +  ++ E+  +E  K+  E+ E ++  + +E+ +    K +++++  K+  +K+      
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 574

Query: 70  EIEESLKERKEKT 82
           EI++ L+ +  + 
Sbjct: 575 EIQD-LQTKMRRR 586

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
            +  +   +   E + +NEQ  ++KE   +E  K+  +K +  + +  K++++     ++
Sbjct: 496 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 555

Query: 70  EIEESLKERKEK 81
           E E+ LKE  +K
Sbjct: 556 EQEQLLKEGFQK 567

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 28/45 (62%)

Query: 20  KEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
           K E  EE  +EE+  ++ +E+ + +   ++++++KK K KK +K 
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
            K + +E+  +EEE  + E+E+ + E   EE+ ++KK K KK +K 
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 22  EEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEE 73
            + E  E+  +E+E  +EEK     +   ++++++KK K KK E++V + E 
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 16  EKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           +    EE  EE E  ++EKED ++E   ++++++KK K KK +K 
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261

>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 15  IEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKE 64
             K    EE  E E+  KE+++  +++   ++++++KK K KK +K   +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264

>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 18/57 (31%), Positives = 39/57 (68%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQ 66
            K+   E    EEEK++ E++++EK+D +++K K ++  ++++KK K KK K++ ++
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQE 266

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 30/81 (37%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
             RR     + K  + R  +       + E++    ++ + KK KK    KK KK    K
Sbjct: 334 TMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGK 393

Query: 62  KKEEQSVKEIEESLKERKEKT 82
           K         ++   E+K  T
Sbjct: 394 KAAATKKPAADKKPAEKKPTT 414

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 32/79 (40%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           + ++      +  +     + + +E+    +K +    ++    KK KK    KK    K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399

Query: 61  KKKEEQSVKEIEESLKERK 79
           K   ++   E + + +E+K
Sbjct: 400 KPAADKKPAEKKPTTEEKK 418

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
             K R++K     E +  E+    K+   ++  K    KK KK    KK    K+  + K
Sbjct: 346 NHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405

Query: 70  EIEESLKERKEK 81
           +  E     +EK
Sbjct: 406 KPAEKKPTTEEK 417

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 36/75 (48%)

Query: 12  KKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEI 71
           ++    + + ++     + + E++ V  +K ++KK KK    KK KK    K+  + K+ 
Sbjct: 342 RQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401

Query: 72  EESLKERKEKTLTED 86
               K  ++K  TE+
Sbjct: 402 AADKKPAEKKPTTEE 416

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 18/81 (22%), Positives = 27/81 (33%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
               R     K +  +     E K E +    +K   ++ K     KK KK    KK   
Sbjct: 338 NTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAA 397

Query: 61  KKKEEQSVKEIEESLKERKEK 81
            KK     K  E+     ++K
Sbjct: 398 TKKPAADKKPAEKKPTTEEKK 418

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 33/59 (55%)

Query: 64  EEQSVKEIEESLKERKEKTLTEDSQCDTMIPVFKKGVLYKGIYCPSLTNSFREPSLEMS 122
           E+Q++K+++ SLK                            +Y     +S   P+L + 
Sbjct: 18  EKQALKKLQASLK----------------------------LYAD---DS--APALAIK 43

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 24  KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKEIEESLKER 78
           K+ENE   K+KE  EEE+  + + + K+++++++K +K KE        + L   
Sbjct: 392 KQENENMRKKKE--EEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSA 444

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 8   AGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKK---------- 57
                K+++  ++  E +E+  +   K+    +KN K    +K   K  K          
Sbjct: 263 PNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFF 322

Query: 58  KKKKKKEEQ 66
             K KK  +
Sbjct: 323 GAKNKKTGK 331

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 12/61 (19%), Positives = 18/61 (29%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
            K               +K+ +  +   E KE       K+ K  KK  K    +K   K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309

Query: 62  K 62
            
Sbjct: 310 V 310

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKK 62
                 K+ K  ++    +E+  K + ++ K  KK  K    +K   K  K 
Sbjct: 262 LPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313

>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_B 3puf_B 3p56_B Length = 332

 Score = 40.2 bits (93), Expect = 7e-04
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E    +     ++ K  +E  E +++  +      K  KK  K    +K   K ++  +K
Sbjct: 257 EPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMK 316

Query: 70  EIEE--SLKERKEKTL 83
            I+     K +K   +
Sbjct: 317 SIDAFFGAKNKKTGKI 332

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y Length = 293

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 2   RKRRGGAGEKKKRIEKRNKEEEKE------ENEQEEKEKEDVEEEKNKKKKKKKKKKKKK 55
           RK+   A EK +R   +    ++E      E +++   K         +  KK +  KK 
Sbjct: 190 RKKVYKA-EKTQRYV-KTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKKV 247

Query: 56  KKKKKKKKEEQSVKEIEESLKERKEK 81
             K  K     +      +    K +
Sbjct: 248 DPKAAKTTPAATKATPAATKVAPKTQ 273

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 8/96 (8%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 3   KRRGGAGEKKKRIEKRNKEEEKEENEQEEKE-KEDVEEEKNKKKKKKKKKKKKKKKKKKK 61
            R            +   +  +E+ ++          E  N+         K    +   
Sbjct: 116 MRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNY 175

Query: 62  KKEEQSVKEIEESLKERKEKTLTEDSQCDTM---IP 94
               + V+ +   L++ ++       + + +   +P
Sbjct: 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVP 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	1e-05
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	5e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	9e-05
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	6e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.002

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           ++K+   A E++K  E    +   E+ E E +  +   EE N   K  K+K  +K +  K
Sbjct: 47  IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK 106

Query: 61  KKKEEQSVKEIEESLKERKEK 81
           + +E   +  + E L+E+ + 
Sbjct: 107 ENREAH-LAAMLERLQEKDKH 126

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 11/83 (13%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEE----KEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKK 56
            R++   A   K   EKR  E E      E      +    +  +  +  K+ ++     
Sbjct: 56  ERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAA 115

Query: 57  KKKKKKKEEQSVKEIEESLKERK 79
             ++ +++++  +E+ ++ + ++
Sbjct: 116 MLERLQEKDKHAEEVRKNKELKE 138

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 12/78 (15%), Positives = 40/78 (51%), Gaps = 1/78 (1%)

Query: 1   MRKRRGGAGEKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKK 60
           + + +    +  ++ E+  +E  K+  E+ E ++  + +E+ +    K +++++  K+  
Sbjct: 223 LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGF 282

Query: 61  KKKEEQSVKEIEESLKER 78
           +K+      EI++ L+ +
Sbjct: 283 QKESRIMKNEIQD-LQTK 299

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 6e-04
 Identities = 12/71 (16%), Positives = 38/71 (53%)

Query: 10  EKKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVK 69
           E +++ E+  +++E+   E  ++  E +E ++ +  K++++    K +++++  +E   K
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 284

Query: 70  EIEESLKERKE 80
           E      E ++
Sbjct: 285 ESRIMKNEIQD 295

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 16/71 (22%), Positives = 37/71 (52%)

Query: 11  KKKRIEKRNKEEEKEENEQEEKEKEDVEEEKNKKKKKKKKKKKKKKKKKKKKKEEQSVKE 70
           +  +   +   E + +NEQ  ++KE   +E  K+  +K +  + +  K++++     ++E
Sbjct: 214 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273

Query: 71  IEESLKERKEK 81
            E+ LKE  +K
Sbjct: 274 QEQLLKEGFQK 284

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00