Psyllid ID: psy17575

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830--
Protein Sequence
MTHRTLLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccEEEEccccccccccccHHHHHHccccccccccccHHHcHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEEccccHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEccccccEEEEHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccEEEEEccEEEEEEEccccccEEEEEEcccccccccccEEEccccEEEEEcccccccccccccccccccEEEEEEcccEEEEEEEEEcccccEEEEEEEEEcccccccccEEEEcccccccEEEEcccccccccccccccccccccccccccccEEEEEEEEEcccccccccccEEEEEEEEEEEccccccccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccEEEEEEcccccccccccccHHHHHHccccccEEEEccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHcccEEEEcHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHcccccccccccHcHHHccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHccccEEEEccccccccEEEEccHHHEEEHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHcccccccccccHHHHHHHHHHHHccccccccEEEEEEEEccccccccEEEEEEEcccccccccEEEEcccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHccccccEEEEEEEEEcEEEEEcHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccEEEEEccEEEEEEcccccccEEEEEccccccccccccEEEcccEEEEEEcHHcccccccccEEcccccEEEEEEccEEEEEEEEEEcccccEEEEEEEEcccccccccEEEEEEEcccccHHEEHHHHHccccccccHHHccccHHHHcccccEEEEEEEEcHcHHcccccccEEEEEEEEEEEcccccccccEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MTHRTLLEVMrstypepfchayqyipihmpgsqdgkpldnLLFCQkvqnepkvVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEaskisphslqDCGSLLYHLASKiksqssihlPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVnekeleascgvgvivtsEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWadgkyiksEVDVQVLNllgpkteadlapvpkvkvnekkskpksnetqeNGFEFVEENVNIgdlmkklpfhkpgenfksdgyvvtEQTHDLLREHIKYtggkvrtrfppepngilhighAKAININFGYAAAHNGIcflryddtnpekeeEKFFTGIKDMVQwlgykpyqithssDYFHQLYEWAVKLIKKGLAYVCHqksdemkgfnplpspwrerpvEENVKLFEAMKNGLIDEGEATLRMKITLeegkqdpvayrikflphhrtgdswciyptydythclcdsiehithslctkefqSRRSSYYWLCNAldiycpvqweygrlnvNYTVVSKRKIAKLIEEnivndwddprlfTLTAlrrrgfppeAINKFCARMgvtgaqavvspNMLEAVVREVLndtaprvmvvidplplhivnfdqlnvdtkftvpdfpndatkgshdiqfdrtiyieksdfkviqekgyrrlapgqgvgLRYAGLVLEVDKvntkcngaitsidvkatpvdvdnkpkaFIHWVARPISIEVRLYSTLFlhknpedtyqvpegylsdinpdslkvsigyadsgfvgvkpydrfqfervgfftvdrdsninhkpvvNLTVSlkedsgks
Flexible Loop (DISEMBL)
MTHRTLLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVnavnekeleascgvgvivtsedieeTVSKVVEKhkaelldkryrynlGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLgpkteadlapvpkvkvnekkskpksnetqengfEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEmkgfnplpspwreRPVEENVKLFEAMKNGLIDEGEATLRMKITleegkqdpvayRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLieenivndwddprLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDfpndatkgshdiqfdrtIYIEKSDFKVIQEkgyrrlapgqgVGLRYAGLVLEVDKVNTKCNGaitsidvkatpvdvdNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFftvdrdsninhkpvvnltvslkedsgks
Low Complexity Region (SEG)
MTHRTLLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLApvpkvkvnekkskpksneTQengfefveenvnIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS
Disordered region (IsUnstruct)
******LEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLN************LSTYLKQAI*********SLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGP*******************************EFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNP***EEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ***********************VKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLT**********
Disordered Region (DISOPRED)
***RTLLEVMRSTYPEPFCHAYQYIPIHMP*******LDNLLFCQKVQN*****************SAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPK************************************************************VVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD***********WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE*****
Disordered Region (DISEMBL)
MTHRTLLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAPVPKVK**************ENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVS********
Disordered Region (DISPRO)
*****LLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTE**L*******************************VNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTHRTLLEVMRSTYPEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQKVQNEPKVVSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	832	2.2.26 [Sep-21-2011]
Q9Y105	778	Probable glutamine--tRNA	yes	N/A	0.919	0.983	0.619	0.0
Q3MHH4	775	Glutamine--tRNA ligase OS	yes	N/A	0.914	0.981	0.588	0.0
P47897	775	Glutamine--tRNA ligase OS	yes	N/A	0.913	0.980	0.583	0.0
O62431	786	Probable glutamine--tRNA	yes	N/A	0.914	0.968	0.582	0.0
P52780	794	Glutamine--tRNA ligase OS	N/A	N/A	0.899	0.942	0.447	0.0
P14325	779	Probable glutamine--tRNA	yes	N/A	0.884	0.944	0.44	1e-180
Q9Y7Y8	811	Probable glutamine--tRNA	yes	N/A	0.907	0.930	0.410	1e-155
P13188	809	Glutamine--tRNA ligase OS	yes	N/A	0.881	0.906	0.395	1e-149
B4EV71	555	Glutamine--tRNA ligase OS	yes	N/A	0.605	0.908	0.450	1e-123
Q6LTD1	555	Glutamine--tRNA ligase OS	yes	N/A	0.604	0.906	0.437	1e-122

>sp|Q9Y105|SYQ_DROME Probable glutamine--tRNA ligase OS=Drosophila melanogaster GN=Aats-gln PE=1 SV=1

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/780 (61%), Positives = 590/780 (75%), Gaps = 15/780 (1%)

Query: 62  ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQD-CGSLLYHLASK 120
            D +I+ F ++G++E+KAKETLKN  ++  L+ ++  A   +   L D  G L+YH+A+K
Sbjct: 3   GDDLIAKFQALGMSEQKAKETLKNANVTKNLQLSLAAAGSAT---LSDGTGMLIYHMATK 59

Query: 121 IKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNE----KELEASCGVGVIV 176
           +K Q++ HLPLLV+YIV   LD+T RVDAALEY+L    ++N     + LE  CGVGV+V
Sbjct: 60  LKPQTADHLPLLVRYIVEHKLDNTQRVDAALEYLLKCGQSLNANIDLQALEKECGVGVVV 119

Query: 177 TSEDIEETV-SKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNL 235
           T E IE TV +K+   +K  LL++RY +N   ++Q+VR  LKWAD K +K+ +DV++ +L
Sbjct: 120 TPEQIERTVQAKIKASYKEALLEQRYHFNSFKILQDVRGELKWADAKSVKAAIDVEIFDL 179

Query: 236 LGPKTEADLAPVPKVKVNEKKSKPKSNET--QENGFEFVEENVNIGDLMK-KLPFHKPGE 292
           LGPKTEADL P  K     K +KPK+  T   +      +    I +LMK K+ FH PGE
Sbjct: 180 LGPKTEADLKPQTKANDKPKAAKPKAEVTPAAQTAEAASDGATTISELMKTKVHFHAPGE 239

Query: 293 NFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNG 352
           NFK+DGYVVTE T  LL+EH+  TGGKV TRFPPEPNGILHIGHAKAININFGYAAAH+G
Sbjct: 240 NFKADGYVVTEHTERLLKEHLARTGGKVHTRFPPEPNGILHIGHAKAININFGYAAAHDG 299

Query: 353 ICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAY 412
           +C+LRYDDTNPEKEEEKFF  IK+MV+WLGYKP++IT+SSD F QLYEWAV LI KGLAY
Sbjct: 300 VCYLRYDDTNPEKEEEKFFLAIKEMVEWLGYKPFKITYSSDNFQQLYEWAVVLINKGLAY 359

Query: 413 VCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPV 472
           VCHQK++E+KGFNP PSPWRERP+EE+++LFE MK G IDEG ATLRMK+TLEEGK DPV
Sbjct: 360 VCHQKAEELKGFNPKPSPWRERPIEESLRLFEDMKRGKIDEGAATLRMKVTLEEGKMDPV 419

Query: 473 AYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI 532
           AYRIKF+ HHRTG  WCIYPTYDYTHCLCDS+E ITHSLCTKEFQSRRSSYYWLCNAL I
Sbjct: 420 AYRIKFISHHRTGSDWCIYPTYDYTHCLCDSLEDITHSLCTKEFQSRRSSYYWLCNALGI 479

Query: 533 YCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFC 592
           YCPVQWEYGRLN+NY +VSKRKIAKLI E IV+DWDDPRLFTLTALRRRGFP EAIN FC
Sbjct: 480 YCPVQWEYGRLNMNYALVSKRKIAKLITEQIVHDWDDPRLFTLTALRRRGFPAEAINNFC 539

Query: 593 ARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDF 652
           A+MGVTGAQ  V P MLEA VR+VLN TAPR +VV++PL + I NF       +  VPDF
Sbjct: 540 AQMGVTGAQIAVDPAMLEAAVRDVLNVTAPRRLVVLEPLKVTIKNFPHA-APVQLEVPDF 598

Query: 653 PNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDK-VNTKC 711
           P +  +G+H I  D+ IYIE+ DFK+  EKGYRRLAP Q VGLR+AGLV+ VD+ V    
Sbjct: 599 PQNPQQGTHKITLDKVIYIEQGDFKLEPEKGYRRLAPKQSVGLRHAGLVISVDEIVKDPA 658

Query: 712 NGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSD 771
            G +  +   + P +   KPKAF+ WV++PI +EVRLY  LF HKNPED  +VP G+LSD
Sbjct: 659 TGQVVELICTSQPAEQAEKPKAFVQWVSQPIQLEVRLYEQLFKHKNPEDPNEVPGGFLSD 718

Query: 772 INPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
           I+  S+ V + +AD      K YD+FQFER+GFF+VD D++ NH  V N TV LKED+GK
Sbjct: 719 ISEQSMSVVVAFADRALNQAKVYDKFQFERIGFFSVDPDTSANHL-VFNRTVGLKEDAGK 777

Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8

>sp|Q3MHH4|SYQ_BOVIN Glutamine--tRNA ligase OS=Bos taurus GN=QARS PE=2 SV=1

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/773 (58%), Positives = 575/773 (74%), Gaps = 12/773 (1%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSL-QDCGSLLYHLASKIKSQ 124
           +S F  +GL+E+KA+ETLKN  LS  L++A  +A +    S+ +  G+LLY LAS+++  
Sbjct: 7   LSLFTGLGLSEQKARETLKNTVLSAQLREAATQAQQTLGSSIDKATGTLLYGLASRLRDP 66

Query: 125 SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSEDIEE 183
               L  LV YI S+ + +  ++ AALEYV SH ++ +N ++ E  CGVGV+VT E IEE
Sbjct: 67  R--RLSFLVSYITSRKIHTETQLSAALEYVRSHPLDPINTEDFEQECGVGVVVTPEQIEE 124

Query: 184 TVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEAD 243
            V   + +H+A+LL +RY +++GL+M E R  LKWADGK IK EVD+QVL+LLGPKTE D
Sbjct: 125 AVEAAINRHRAKLLVERYHFSMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPKTETD 184

Query: 244 LAPVPKVKVN--EKKSKPKSNETQENGFEFVEENVNIGDLMK--KLPFHKPGENFKSDGY 299
           L   PKV     E+  +  + +  ENG E V + +++ + ++   L FHKPGEN+K+ GY
Sbjct: 185 LEKKPKVAKARPEETDQRTAKDVVENG-EVVVQTLSLMEQLRGEALKFHKPGENYKTPGY 243

Query: 300 VVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYD 359
           V T  T DLL++H+  TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICFLR+D
Sbjct: 244 VTTPHTMDLLKQHLDITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFD 303

Query: 360 DTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD 419
           DTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++  AYVCHQ+ +
Sbjct: 304 DTNPEKEEAKFFTAIYDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRDQAYVCHQRGE 363

Query: 420 EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFL 479
           E+KG NPLPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR+K+ 
Sbjct: 364 ELKGHNPLPSPWRDRPIEESLLLFEAMRKGKFAEGEATLRMKLVMEDGKMDPVAYRVKYT 423

Query: 480 PHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE 539
           PHHRTGD+WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCPVQWE
Sbjct: 424 PHHRTGDTWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPVQWE 483

Query: 540 YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599
           YGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+GVT 
Sbjct: 484 YGRLNLHYAVVSKRKILQLVAAGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVGVTV 543

Query: 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKG 659
           AQ  + P++LEA VR+VLNDTAPR M V++PL + I NF          VP+FP D TKG
Sbjct: 544 AQTTMEPHLLEACVRDVLNDTAPRAMAVLEPLQVVITNFPATKA-LDIQVPNFPADETKG 602

Query: 660 SHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSID 719
            H + F  T++IE+ DFK   E GY+RLA GQ VGLR+ G V+E+  V    +G + S+ 
Sbjct: 603 FHQVPFGSTVFIERMDFKEEPEPGYKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVESLK 662

Query: 720 VKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLK- 778
           V     D   KPKAFIHWV++P++ E+RLY  LF HKNPED  +VP G+LSD+NP SL+ 
Sbjct: 663 VTCRRADAGEKPKAFIHWVSQPLTCEIRLYERLFQHKNPEDPAEVPGGFLSDLNPASLQV 722

Query: 779 VSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
           V     D      KP+D+FQFER+G+F+VD DSN   + V N TV+LKED GK
Sbjct: 723 VEAALVDCSVALAKPFDKFQFERLGYFSVDPDSN-QGQLVFNRTVTLKEDPGK 774

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P47897|SYQ_HUMAN Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/774 (58%), Positives = 575/774 (74%), Gaps = 14/774 (1%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSL-QDCGSLLYHLASKIKSQ 124
           +S F S+GL+E+KA+ETLKN  LS  L++A  +A +    ++ +  G LLY LAS+++  
Sbjct: 7   LSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLASRLRD- 65

Query: 125 SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSEDIEE 183
            +  L  LV YI SK + +  ++ AALEYV SH ++ ++  + E  CGVGVIVT E IEE
Sbjct: 66  -TRRLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPEQIEE 124

Query: 184 TVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEAD 243
            V   + +H+ +LL +RY +N+GL+M E R +LKWADGK IK+EVD+QVL+LLGPK EAD
Sbjct: 125 AVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPKLEAD 184

Query: 244 LAP---VPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMK--KLPFHKPGENFKSDG 298
           L     V K ++ E   +  + +  ENG E  ++ +++ + ++   L FHKPGEN+K+ G
Sbjct: 185 LEKKFKVAKARLEETDRR-TAKDVVENG-ETADQTLSLMEQLRGEALKFHKPGENYKTPG 242

Query: 299 YVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRY 358
           YVVT  T +LL++H++ TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICFLR+
Sbjct: 243 YVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRF 302

Query: 359 DDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKS 418
           DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++GLAYVCHQ+ 
Sbjct: 303 DDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQRG 362

Query: 419 DEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKF 478
           +E+KG N LPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR+K+
Sbjct: 363 EELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYRVKY 422

Query: 479 LPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQW 538
            PHHRTGD WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCPVQW
Sbjct: 423 TPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPVQW 482

Query: 539 EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVT 598
           EYGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+GVT
Sbjct: 483 EYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVGVT 542

Query: 599 GAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATK 658
            AQ  + P++LEA VR+VLNDTAPR M V++ L + I NF          VP+FP D TK
Sbjct: 543 VAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAK-SLDIQVPNFPADETK 601

Query: 659 GSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI 718
           G H + F   ++IE++DFK   E G++RLA GQ VGLR+ G V+E+  V    +G + S+
Sbjct: 602 GFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVESL 661

Query: 719 DVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLK 778
           +V     D   KPKAFIHWV++P+  EVRLY  LF HKNPED  +VP G+LSD+N  SL 
Sbjct: 662 EVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLASLH 721

Query: 779 -VSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
            V     D      KP+D+FQFER+G+F+VD DS+   K V N TV+LKED GK
Sbjct: 722 VVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSH-QGKLVFNRTVTLKEDPGK 774

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|O62431|SYQ_CAEEL Probable glutamine--tRNA ligase OS=Caenorhabditis elegans GN=ers-1 PE=2 SV=1

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/780 (58%), Positives = 559/780 (71%), Gaps = 19/780 (2%)

Query: 69  FLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIH 128
            LS+GL++ K  ETLKN  L+  +   ++ AS+    S Q  G+LLY LA+K+K Q + H
Sbjct: 7   LLSLGLSDSKVAETLKNVKLTETIGSIVKLASESGEISKQK-GTLLYQLATKLKPQVAAH 65

Query: 129 LPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSEDIEETVSK 187
            PL+VKYI++  + +  ++ AA+EY+LSH V  +   + E SCGVGV+VT +DIE  V+K
Sbjct: 66  TPLVVKYIMNDGIKTEPQLSAAIEYLLSHTVKGIQVPDFEKSCGVGVVVTIDDIEAAVTK 125

Query: 188 VVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAPV 247
           V+ +H+ +++ +RY +  G ++ E+R LL WADG   K EVD++ L LLGPKT  DLAP 
Sbjct: 126 VIGQHREKIVAERYSFPAGKLLGELRALLPWADGAITKKEVDLRFLELLGPKTAEDLAPK 185

Query: 248 PKVKVNEKKSKPKS-----------NETQENGFEFVEENVNIGDLMK-KLPFHKPGENFK 295
            K K  E     K            N+ + +  EF +    + +L++ +  FHK GENFK
Sbjct: 186 KKEKKPEGPKPSKDAAAAATAPGTKNQKEASPEEFADGAETMDELLRTRAHFHKVGENFK 245

Query: 296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICF 355
            DGYV T +T +LL+ H+   GGKV TRFPPEPNG+LHIGHAKAININFGYA A  G+C 
Sbjct: 246 QDGYVTTPKTAELLKAHVAAVGGKVVTRFPPEPNGVLHIGHAKAININFGYAKAMGGVCN 305

Query: 356 LRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH 415
           LR+DDTNPEKEEEKFF+ I+D+V WLGY P ++THSSD F QLY WAVKLI+KGLA+VCH
Sbjct: 306 LRFDDTNPEKEEEKFFSAIEDIVHWLGYDPARVTHSSDNFQQLYLWAVKLIQKGLAFVCH 365

Query: 416 QKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
           QK +EM+GF    SPWRERP+EEN++LFE MKNG  DEGEATLR+K+TLEEGK DPVAYR
Sbjct: 366 QKVEEMRGFEVQLSPWRERPIEENIQLFEDMKNGKFDEGEATLRLKLTLEEGKVDPVAYR 425

Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
           IK++PHHRTG+ WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLCNALDIYCP
Sbjct: 426 IKYVPHHRTGNQWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNALDIYCP 485

Query: 536 VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM 595
           VQWEYGRLNVNYTVVSKRKI KLI    VNDWDDPRLFTLTALRRRG P EAIN+F A++
Sbjct: 486 VQWEYGRLNVNYTVVSKRKILKLITTKTVNDWDDPRLFTLTALRRRGIPSEAINRFVAKL 545

Query: 596 GVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND 655
           G+T +Q V+ P++L+A VR+ LN  APR M V++ L L I NF +LN+ +   VPDFP+D
Sbjct: 546 GLTMSQMVIDPHVLDATVRDYLNIHAPRTMAVLEGLKLTIENFSELNLPSSVDVPDFPSD 605

Query: 656 ATK-GSHDIQFDRTIYIEKSDFKV-IQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNG 713
            T    H +  DR I+IEKSD+K    +K +RRL P Q VGL++ GLVL   K      G
Sbjct: 606 PTDPRKHSVSVDREIFIEKSDYKPDDSDKSFRRLTPKQAVGLKHIGLVLRFVKEVKDAEG 665

Query: 714 AITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDIN 773
            +T + VKA  +   +KPKAFIHWVA+P+S EVRLY  LF  KNPED   VP G+LSDIN
Sbjct: 666 HVTEVVVKAEKLSEKDKPKAFIHWVAKPVSCEVRLYDRLFKSKNPEDAQLVPGGFLSDIN 725

Query: 774 PDSLKVSI-GYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832
           PDSL V      D      K YDRFQFER+GFF VDRDS  +   V N TV LK D G S
Sbjct: 726 PDSLTVVYNALIDQSIAKSKVYDRFQFERIGFFCVDRDST-SSTLVFNRTVMLK-DGGAS 783

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P52780|SYQ_LUPLU Glutamine--tRNA ligase OS=Lupinus luteus PE=2 SV=2

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/797 (44%), Positives = 496/797 (62%), Gaps = 49/797 (6%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQS 125
           +  FL +GL+E+ AK T+ N  ++T L   I +A  ++    +  G+LLY +A+K  + +
Sbjct: 15  LELFLKIGLDERTAKNTVANNKVTTNLTSVINDAG-VTDGCSRTVGNLLYTVATKYPANA 73

Query: 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNE--KELEASCGVGVIVTSEDIEE 183
             H P L++YIV+  + +T ++DAAL + LS   + N    + E +CGVGV V++EDI+ 
Sbjct: 74  LPHRPTLLQYIVNSKVKTTAQLDAALSF-LSATGSENLDLNKFEEACGVGVEVSTEDIKH 132

Query: 184 TVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEAD 243
            V +VVE++KA +L+ RYR N+G ++  VR  L WAD K +K  VD ++  +LG +T AD
Sbjct: 133 AVDEVVEENKATILELRYRVNVGELLGHVRKRLPWADAKVVKQLVDAKLYEILGDRTAAD 192

Query: 244 ----LAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFK---- 295
                    K    E K+ P +  T E   E         DL   L F  P +NFK    
Sbjct: 193 NEKPKKKKEKPAKVEDKAAPVA--TSEKPLE--------EDLNPYLIFPNPEDNFKVHTE 242

Query: 296 ---SDGYVV-TEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHN 351
              SDG ++    T  LL +H+K TGGKV TRFPPEPNG LHIGHAKA+ ++FG A   N
Sbjct: 243 VPFSDGNILRCCNTKALLEKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFVDFGLAKDRN 302

Query: 352 GICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLA 411
           G C+LR+DDTNPE E++++   I+++VQW+G++P++IT++S+YF +LYE+AV+LI++G A
Sbjct: 303 GGCYLRFDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSNYFQELYEFAVELIRRGHA 362

Query: 412 YVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ 469
           YV HQ +DE+K +    L SPWR+RP+ E++KLFE M+ G I+EG+ATLRMK  ++    
Sbjct: 363 YVDHQTADEIKEYREKKLNSPWRDRPISESLKLFEDMRRGFIEEGKATLRMKQDMQSDNY 422

Query: 470 ---DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWL 526
              D +AYRIKF PH   GD WCIYP+YDY HC+ DSIE++THSLCT EF++RR+SYYWL
Sbjct: 423 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENVTHSLCTLEFETRRASYYWL 482

Query: 527 CNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
            +AL IY P  WEY RLNV+ TV+SKRK+ +L+ E  V+ WDDPRL TL  LRRRG  P 
Sbjct: 483 LHALGIYQPYVWEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTPT 542

Query: 587 AINKFCARMGVTGAQA-VVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFD---QLN 642
           AIN F   MG+T +   ++S   LE  VRE LN TAPR MVV+ PL + I N +    + 
Sbjct: 543 AINAFVRGMGITRSDGTLISVERLEYHVREELNKTAPRAMVVLHPLKVVITNLEAKSAIE 602

Query: 643 VDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVL 702
           VD K   PD   D     + I F   +YIE+SDF++   K Y  LAPG+ V LRYA  + 
Sbjct: 603 VDAK-KWPDAQADDASAFYKIPFSNVVYIERSDFRMQDSKDYYGLAPGKSVILRYAFPIK 661

Query: 703 EVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVAR------PISIEVRLYSTLFLHK 756
             + +    N  I  I  +  P     KPK  +HWV++      P+ +EVRL+  LFL +
Sbjct: 662 CTEVILADDNETILEIRAEYDPSK-KTKPKGVLHWVSQPSPGVDPLKVEVRLFERLFLSE 720

Query: 757 NPEDTYQVPEGYLSDINPDS-LKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINH 815
           NP +     + +L D+NP S +++S  Y  S     K  DRFQFER+G+F VD+DS    
Sbjct: 721 NPAEL----DNWLGDLNPHSKVEISNAYGVSLLKDAKLGDRFQFERLGYFAVDQDST-PE 775

Query: 816 KPVVNLTVSLKEDSGKS 832
           K V N TV+LK+  GK 
Sbjct: 776 KLVFNRTVTLKDSYGKG 792

Lupinus luteus (taxid: 3873)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P14325|SYQ_DICDI Probable glutamine--tRNA ligase OS=Dictyostelium discoideum GN=glnS PE=2 SV=2

 Score =  631 bits (1628), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 352/800 (44%), Positives = 489/800 (61%), Gaps = 64/800 (8%)

Query: 63  DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIK 122
           D +++ F  +GL+  KAKET  N TLS+ L++ I+EA   S    +  G LLY LA+K  
Sbjct: 10  DELVTLFSQIGLDSSKAKETTNNATLSSNLQEIIKEAGAESGCE-KSVGLLLYTLATKYP 68

Query: 123 SQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDI 181
           + +  H   LV YI +K   +++ + A L+Y+    N  +N  E E SCGVGV++T E +
Sbjct: 69  ANAMKHRATLVDYIANKKSVNSINLQACLDYLRRTANEELNVAEFEQSCGVGVVITREQV 128

Query: 182 EETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTE 241
            + VS  + K+K++LL+KRY++N+G ++ E++  LKWA+ K IK EVD  +L+LLGPKT+
Sbjct: 129 AQAVSDYINKNKSDLLEKRYQFNIGGILMEIKNSLKWANAKDIKEEVDAAILSLLGPKTD 188

Query: 242 ADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLP-----------FHKP 290
           AD AP          +KP    T              GDL   +P           F  P
Sbjct: 189 ADKAP---------PAKPVKPTTPTAVATTTAATTTTGDLSPIIPAELKPAKEEIKFPDP 239

Query: 291 GENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAH 350
            +N         + T  LL +H+K TGGK+ TRFPPEPNG LHIGHAKA+++NFGYA  +
Sbjct: 240 SDNI--------QNTPKLLADHLKTTGGKIVTRFPPEPNGYLHIGHAKAMHLNFGYAKKN 291

Query: 351 NGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGL 410
            G C+LR+DDTNPEKE +++   I D V+WLG++P +IT+SS  F  LYE A +LI++G 
Sbjct: 292 GGKCYLRFDDTNPEKENQEYIDSIIDSVKWLGHEPCEITYSSSQFDTLYEMANELIRRGY 351

Query: 411 AYVCHQKSDEM-KGFNPLP-SPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK 468
           AYVCHQ + E+ +G   +  SP+R R VEEN+KLFE M+ G  +EG+A LRMK  ++   
Sbjct: 352 AYVCHQTASEISEGREKMTDSPYRNRTVEENLKLFEDMRLGKFEEGKAILRMKGDMKHPN 411

Query: 469 ---QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYW 525
              +D +AYRIK+  H  +GD WCIYP+YDYTHCL DSIE+ITHSLCT EF+ RR +Y W
Sbjct: 412 PCMRDLIAYRIKYHHHPMSGDKWCIYPSYDYTHCLVDSIENITHSLCTLEFEIRRLTYNW 471

Query: 526 LCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPP 585
           L + L +Y PV WEY RLN+ +TV+SKRKI  L++  IVN WDDPRL TL A RR+G+ P
Sbjct: 472 LIDVLGLYRPVVWEYARLNLTHTVLSKRKIITLVQNKIVNGWDDPRLSTLNAFRRKGYTP 531

Query: 586 EAINKFCARMGVTGAQA-VVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVD 644
           EAIN  C  +GVT      +S  +LE   R+ L+  A R M V DP+ + I N+ + +  
Sbjct: 532 EAINLLCDTIGVTRTNGTTISYELLELCCRQDLDGKATRAMAVFDPIKVVITNYPE-DKS 590

Query: 645 TKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEV 704
            +   P+ P+   KG+H I F R +YIE+SDF++   K +  LAPG+ + L+YA      
Sbjct: 591 EEINAPNIPSKPEKGTHKIDFSRIVYIERSDFRMEDNKDFFGLAPGKEILLKYA------ 644

Query: 705 DKVNTKCNGAITSIDVKATPV----DVDNKPKAF--IHWVA-----RPISIEVRLYSTLF 753
              N KC   I   D K T +    D DN  K    IHWV+      P+  EVRLY  LF
Sbjct: 645 --YNIKCEKVIQDADGKVTELHVTYDKDNSSKKLKTIHWVSSVAGTEPMKAEVRLYEHLF 702

Query: 754 LHKNPEDTYQVPEGYLSDINPDSLK-VSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSN 812
                +D+ ++ + +L++INP+SL+ +   + D   +  K YDR+QFERVG+F VD+D+ 
Sbjct: 703 -----KDS-EIGDDWLNNINPNSLRIIPNAFIDKTVLASKEYDRYQFERVGYFVVDKDTT 756

Query: 813 INHKPVVNLTVSLKEDSGKS 832
            + K V N TVSLKE+  KS
Sbjct: 757 -SDKMVFNRTVSLKENKEKS 775

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9Y7Y8|SYQ_SCHPO Probable glutamine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qrs1 PE=3 SV=1

 Score =  548 bits (1413), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 340/829 (41%), Positives = 468/829 (56%), Gaps = 74/829 (8%)

Query: 58  MTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHL 117
           M +  + + + F  +GLNE   K+TLKN+ LS+ L + IEE +  S    +  G+LL+ L
Sbjct: 1   MDQDYEELRAKFTKIGLNETTVKDTLKNKKLSSSLNKVIEETNVGSSGCDRTIGNLLFTL 60

Query: 118 ASKIKSQ----SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVG 173
           A+    Q    S+ H   +   IVS  L + L+V+AA+ Y     + ++E E +   GVG
Sbjct: 61  ANASLKQKDPKSNAHEAFIASKIVSGDLKTNLQVNAAITYCKDK-DTIDESEFDKETGVG 119

Query: 174 VIVTSEDIEETVSKVVEKHKAELLDKRYRY-NLGLVMQEVRTLLKWADGKYIKSEVDVQV 232
           V++T E IE+ V   V ++K+++L++RY+  N          LLKWA    +K  +D + 
Sbjct: 120 VVLTPEQIEQLVGDYVAENKSKILEQRYQLLNPSASALRQHALLKWAPQLEVKQTLDRKF 179

Query: 233 LNLLGPKTEADLAPVPKVKVNEKKSKPKSNET-----------QENGFEFVEENVNIGDL 281
           L LLGPKTE D A   K     K SK K+ ++           Q   +   EE    G L
Sbjct: 180 LELLGPKTEQDAAAGKKKGAKAKNSKQKTVDSGKAKEQKIVSEQSKKYNMFEE----GFL 235

Query: 282 MKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAIN 341
            K    HKPG N        T+   + ++EH++ TGG V TRFPPEPNG LHIGH+KAI 
Sbjct: 236 AK---LHKPGGN--------TQLIPERMKEHLQATGGGVVTRFPPEPNGYLHIGHSKAIA 284

Query: 342 INFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEW 401
           +NFG+A  HNG+C+LR+DDTNPE EEE++F  IKD+V WLG++PY+IT+SSDYF +LYE 
Sbjct: 285 VNFGFARYHNGVCYLRFDDTNPEAEEERYFESIKDLVAWLGFQPYKITYSSDYFDKLYEL 344

Query: 402 AVKLIKKGLAYVCHQKSDEMK----GFNPLP---SPWRERPVEENVKLFEAMKNGLIDEG 454
           A +LIK+  AYVCH    E+K    G    P      R+RP+EE++  F  M++G     
Sbjct: 345 AEELIKRDKAYVCHCTDAEIKKARGGEERGPRYACVHRDRPIEESLLEFRNMRDGKYQPK 404

Query: 455 EATLRMKITLEEGKQ---DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSL 511
           EA LRMK  L +G     D +AYR+   PH RTGD W IYPTYD+THCL DS E+I+HSL
Sbjct: 405 EAILRMKQDLSDGNPQMWDLIAYRVLNSPHPRTGDKWKIYPTYDFTHCLVDSFENISHSL 464

Query: 512 CTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPR 571
           CT EF   R SY WLCNAL++YCP Q EYGRLNV  T++SKRKI KL++E  V+ W+DPR
Sbjct: 465 CTTEFILSRVSYEWLCNALEVYCPAQREYGRLNVVGTLMSKRKIMKLVKEGYVHGWNDPR 524

Query: 572 LFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPL 631
           L+TL ALRRRG PP AI +F + +GVT A + +     E  VR+ L ++ PR+M + DP+
Sbjct: 525 LYTLVALRRRGVPPGAILEFVSEVGVTTAVSNIEVARFENCVRKFLENSVPRLMFLPDPI 584

Query: 632 PLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQ 691
            + + N D  +   +  +P  P D + GS      + IYI++SDF+      + RL  GQ
Sbjct: 585 KVTLENLDD-SYREQIEIPFNPKDPSMGSRSAFLTKHIYIDRSDFREEASSDFFRLTLGQ 643

Query: 692 GVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVAR------PISI- 744
            VGL  A   +   +V     G    I +         KPK FI WV+R      P+ I 
Sbjct: 644 PVGLFRASHPVVAKRVVKNDEGEPIEI-IAEYDASSSKKPKTFIQWVSRDKESNSPVLIA 702

Query: 745 EVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS---LKVSI---GYAD----------SGF 788
           E RL++ LF   NP    +  +   + +NP+S   LK SI   G  D             
Sbjct: 703 ETRLFNNLFKCDNPAALKE--QELAAQLNPESEVVLKNSIIEPGIYDLIKSAPWPKTDSS 760

Query: 789 VGVKPYD-----RFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832
            GV   +     RFQ  RVG+F +D D+   +  V+N  VSL+EDS K+
Sbjct: 761 AGVDKAENPESVRFQAMRVGYFCLDEDTKKPNHLVLNRIVSLREDSAKN 809

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P13188|SYQ_YEAST Glutamine--tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLN4 PE=1 SV=2

 Score =  529 bits (1363), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 333/841 (39%), Positives = 457/841 (54%), Gaps = 108/841 (12%)

Query: 63  DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQ---DCGSLLYHLAS 119
           + +   F  VG  +KK KE +KN+ +S  L + I+E    +P   Q      +L+++LAS
Sbjct: 5   EELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKE----TPSDYQWNKSTRALVHNLAS 60

Query: 120 KIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE 179
            +K        L+V  I++  L ++L+VDAA +YV ++  A  +  +  + GVG+ +T +
Sbjct: 61  FVKGTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITED 120

Query: 180 DIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTL--LKWADGKYIKSEVDVQVLNLLG 237
            +   V + ++++K  +L +RY+   G +  +V+ L  LKWAD +  K  +D +VL LLG
Sbjct: 121 QVRNYVMQYIQENKERILTERYKLVPG-IFADVKNLKELKWADPRSFKPIIDQEVLKLLG 179

Query: 238 PKTEADL-------------APVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKK 284
           PK E DL                 K   N   S PK     E GF        +GDL   
Sbjct: 180 PKDERDLIKKKTKNNEKKKTNSAKKSSDNSASSGPKRTMFNE-GF--------LGDL--- 227

Query: 285 LPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININF 344
              HK GEN         +   +L++EH++ TGGKVRTRFPPEPNG LHIGH+KAI +NF
Sbjct: 228 ---HKVGEN--------PQAYPELMKEHLEVTGGKVRTRFPPEPNGYLHIGHSKAIMVNF 276

Query: 345 GYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVK 404
           GYA  HNG C+LR+DDTNPEKE  ++F  IK MV WLG+KP++IT+SSDYF +LY  A  
Sbjct: 277 GYAKYHNGTCYLRFDDTNPEKEAPEYFESIKRMVSWLGFKPWKITYSSDYFDELYRLAEV 336

Query: 405 LIKKGLAYVCHQKSDEMK---GFNPLPSPWRER--------PVEENVKLFEAMKNGLIDE 453
           LIK G AYVCH  ++E+K   G     +P  ER         +E+N++ F  M++G    
Sbjct: 337 LIKNGKAYVCHCTAEEIKRGRGIKEDGTPGGERYACKHRDQSIEQNLQEFRDMRDGKYKP 396

Query: 454 GEATLRMKITLEEGKQ---DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHS 510
           GEA LRMK  L        D +AYR+   PH RTG  W IYPTYD+THCL DS+E+ITHS
Sbjct: 397 GEAILRMKQDLNSPSPQMWDLIAYRVLNAPHPRTGTKWRIYPTYDFTHCLVDSMENITHS 456

Query: 511 LCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDP 570
           LCT EF   R SY WLC+ + ++ P Q EYGRLN+  TV+SKRKIA+L++E  V  WDDP
Sbjct: 457 LCTTEFYLSRESYEWLCDQVHVFRPAQREYGRLNITGTVLSKRKIAQLVDEKFVRGWDDP 516

Query: 571 RLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP 630
           RLFTL A+RRRG PP AI  F   +GVT +   +     E+ VR+ L DT PR+M V+DP
Sbjct: 517 RLFTLEAIRRRGVPPGAILSFINTLGVTTSTTNIQVVRFESAVRKYLEDTTPRLMFVLDP 576

Query: 631 LPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDF-KVIQEKGYRRLAP 689
           + + + N    + +   T+P  P     G   + F    YIE+SDF + + +K + RL P
Sbjct: 577 VEVVVDNLSD-DYEELATIPYRPGTPEFGERTVPFTNKFYIERSDFSENVDDKEFFRLTP 635

Query: 690 GQGVGLRYAGLVLEVDKVNTKCNGAITSI----DVKATPVDVDNKPKAFIHWVARPIS-- 743
            Q VGL      +    +     G I  I    D K        KPK +I WV  PIS  
Sbjct: 636 NQPVGLIKVSHTVSFKSLEKDEAGKIIRIHVNYDNKVEEGSKPKKPKTYIQWV--PISSK 693

Query: 744 -------IEVRLYSTLFLHKNPEDTYQVPEGYLSDINP---------------------- 774
                   E R+Y+ LF  +NP      PEG+L DINP                      
Sbjct: 694 YNSPLRVTETRVYNQLFKSENPSSH---PEGFLKDINPESEVVYKESVMEHNFGDVVKNS 750

Query: 775 ----DSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSG 830
               DS+K S  Y +      K   RFQ  RVG+FT+D++S  + K ++N  VSLK+ + 
Sbjct: 751 PWVVDSVKNSEFYVEED-KDSKEVCRFQAMRVGYFTLDKESTTS-KVILNRIVSLKDATS 808

Query: 831 K 831
           K
Sbjct: 809 K 809

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|B4EV71|SYQ_PROMH Glutamine--tRNA ligase OS=Proteus mirabilis (strain HI4320) GN=glnS PE=3 SV=1

 Score =  442 bits (1138), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/531 (45%), Positives = 330/531 (62%), Gaps = 27/531 (5%)

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   I+  VQ
Sbjct: 28  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGKCNLRFDDTNPVKEDVEYINSIQKDVQ 87

Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL------PSPWR 432
           WLG++    + +SSDYF QLY++A++LI KGLAYV    ++E++ +          SP+R
Sbjct: 88  WLGFQWDGNVHYSSDYFDQLYQYAIELINKGLAYVDELSAEEIREYRGTLKEPGKNSPYR 147

Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
            R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 148 SRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207

Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E+ITHSLCT EFQ  R  Y W+ + + I C P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALENITHSLCTLEFQDNRRLYDWVLDNITIPCHPRQYEFSRLNLEYT 267

Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+ +L+ ENIV+ WDDPR+ T++ LRRRG+  E+I +FC R+GVT     V    
Sbjct: 268 VMSKRKLNQLVTENIVDGWDDPRMPTISGLRRRGYTAESIREFCQRIGVTKQDNNVEMAS 327

Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LEA +R+ LN+ APR M VIDP+ L I N  +   +   T P+ PN    G+ ++ F R 
Sbjct: 328 LEACIRDDLNENAPRAMAVIDPVRLVIENMPE--GEEILTAPNHPNKPEMGTREVPFSRE 385

Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVD 728
           IYI+++DFK    + Y+RL  G+ V LR A  V++ ++V     G IT+I     P  ++
Sbjct: 386 IYIDRADFKEEANRQYKRLVLGKEVRLRNA-YVIKAERVEKDEQGEITTIYCTYDPQTLN 444

Query: 729 NKP------KAFIHWVARPISI--EVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVS 780
             P      K  IHWV+ P +I  E+RLY  LF   NP       E +LS INP+SL + 
Sbjct: 445 KDPADGRKVKGVIHWVSIPHAIPAEIRLYDRLFSVPNP----GAEEDFLSTINPESLVIR 500

Query: 781 IGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
            G+ ++          +QFER G+F  D+ S  + K V N TV L++   K
Sbjct: 501 QGFVEASLKDAAIEKAYQFEREGYFCADKLSTAD-KLVFNRTVGLRDTWAK 550

Proteus mirabilis (strain HI4320) (taxid: 529507)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6LTD1|SYQ_PHOPR Glutamine--tRNA ligase OS=Photobacterium profundum GN=glnS PE=3 SV=1

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/533 (43%), Positives = 333/533 (62%), Gaps = 30/533 (5%)

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNPEKE+ ++   IK+ V 
Sbjct: 29  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPEKEDIEYVESIKNDVN 88

Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP------LPSPWR 432
           WLG+    +I +SS+YF +LY +AV+LI KGLAYV     ++M+ +         PSP+R
Sbjct: 89  WLGFDWSGEICYSSNYFDKLYGFAVELINKGLAYVDELSPEQMREYRGNLTEPGKPSPYR 148

Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R V EN++LFE MKNG ++EG  +LR KI +       +DPV YR++F  HH+TGD WC
Sbjct: 149 DRSVAENLELFEKMKNGEVEEGIMSLRAKIDMASSFMVLRDPVIYRVRFATHHQTGDKWC 208

Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHS+CT EFQ  R  Y W+ + + I C P Q+E+ RLN+ YT
Sbjct: 209 IYPMYDFTHCISDALEGITHSICTLEFQDNRRLYDWVLDNITIDCQPRQYEFSRLNLEYT 268

Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+ +L+ +N+V+ WDDPR+ T++ LRRRGF   +I +FC R+GVT  +  +  + 
Sbjct: 269 VMSKRKLNQLVTDNLVSGWDDPRMPTVSGLRRRGFTSASIREFCKRIGVTKQENTIEMSS 328

Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTK-FTVPDFPNDATKGSHDIQFDR 667
           LE+ +R+ LN+ APR M V+DP+ + I NF     DT+  TV + PN++  G+ ++ F R
Sbjct: 329 LESCIRDDLNENAPRAMAVLDPVKIVIENFTG---DTEVLTVSNHPNNSEMGTREVPFTR 385

Query: 668 TIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DV 720
            I+IE+ DF+    K Y+RL  G+ V LR A  V++ +++     G IT+I        +
Sbjct: 386 EIWIEREDFREEANKKYKRLVLGKEVRLRGA-YVIKAERIEKDAEGNITTIFCSYDNETL 444

Query: 721 KATPVDVDNKPKAFIHWVARPISI--EVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLK 778
              P D   K K  IHWV+    +  E+RLY  LF   NP       + +++ INP+SL 
Sbjct: 445 GVNPSD-GRKVKGVIHWVSADAGLPAEIRLYDRLFTVANP----AAADDFVTVINPESLT 499

Query: 779 VSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
           V  G+ +      +    FQFER+G+F VD   +   K V N TV L++   K
Sbjct: 500 VLNGFVEPSLKVAEAEKAFQFERIGYFCVDSKDSSAEKLVFNRTVGLRDTWAK 552

Photobacterium profundum (taxid: 74109)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	832
322778839	814	hypothetical protein SINV_09433 [Solenop	0.925	0.945	0.640	0.0
357619562	780	hypothetical protein KGM_05260 [Danaus p	0.915	0.976	0.655	0.0
307196536	781	Probable glutaminyl-tRNA synthetase [Har	0.917	0.976	0.647	0.0
383861242	777	PREDICTED: probable glutamine--tRNA liga	0.913	0.978	0.653	0.0
321476104	770	hypothetical protein DAPPUDRAFT_307141 [	0.915	0.989	0.648	0.0
91092950	766	PREDICTED: similar to glutaminyl-trna sy	0.913	0.992	0.646	0.0
332024637	780	Putative glutaminyl-tRNA synthetase [Acr	0.914	0.975	0.639	0.0
307166500	781	Probable glutaminyl-tRNA synthetase [Cam	0.909	0.969	0.633	0.0
242019257	776	glutaminyl-tRNA synthetase, putative [Pe	0.918	0.984	0.644	0.0
195109638	785	GI24483 [Drosophila mojavensis] gi|19391	0.917	0.971	0.627	0.0

>gi|322778839|gb|EFZ09255.1| hypothetical protein SINV_09433 [Solenopsis invicta]

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/793 (64%), Positives = 614/793 (77%), Gaps = 23/793 (2%)

Query: 54  VSNIMTEIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSL 113
           +SN MT   +  +  F ++GL+E+KAKETLKN  ++  LK AI EA K    + Q+ G L
Sbjct: 29  ISNKMTMGNEEDVKLFQTIGLSEQKAKETLKNVNVTKNLKLAISEAVKHESIT-QETGVL 87

Query: 114 LYHLASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNE-KELEASCGV 172
           LYHLASKIK+Q +  +P +   IV K L+S  RVDAAL Y+L++VN   +  + E  CGV
Sbjct: 88  LYHLASKIKNQIADKIPFITNCIVEKKLNSVQRVDAALTYLLANVNNTPDIAKFEEFCGV 147

Query: 173 GVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQV 232
           G++V+ E IEE V K+++ HK E+L+KRYR+N G +MQ++R  LKWADGK IK+E D+Q+
Sbjct: 148 GIVVSPEQIEEEVEKIIKAHKDEILEKRYRFNSGPLMQQIRNRLKWADGKAIKNEFDIQL 207

Query: 233 LNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENV------------NIGD 280
           L+LLGPK +ADLAP PK     +  +PK  + +    E V+E               I +
Sbjct: 208 LDLLGPKVDADLAPAPK-----QVKQPKDKQIKTKKPEVVKEEQKETLHDEKVGAQTISE 262

Query: 281 LMK-KLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKA 339
           LMK K+ FHKPGEN+K+DGY+VT  TH+LL++H+K TGGKV TRFPPEPNGILHIGHAKA
Sbjct: 263 LMKNKVHFHKPGENYKTDGYIVTPNTHNLLQKHLKATGGKVVTRFPPEPNGILHIGHAKA 322

Query: 340 ININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLY 399
           ININFGYAAA++GIC+LRYDDTNPEKEEEKFF GI++MV+WLGYKPY ITHSSD F QLY
Sbjct: 323 ININFGYAAAYDGICYLRYDDTNPEKEEEKFFVGIREMVEWLGYKPYAITHSSDNFQQLY 382

Query: 400 EWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR 459
           EWAV+LIKK LAYVCHQ S+EMKGFNP PSPWR+RP+E++++LF  MKNGL++EGEATLR
Sbjct: 383 EWAVELIKKDLAYVCHQSSEEMKGFNPPPSPWRDRPIEKSLELFNDMKNGLLEEGEATLR 442

Query: 460 MKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSR 519
           MK+TLEEGKQDPVAYRIK+LPHHRTGD WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSR
Sbjct: 443 MKVTLEEGKQDPVAYRIKYLPHHRTGDKWCIYPTYDYTHCLCDSIENITHSLCTKEFQSR 502

Query: 520 RSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALR 579
           RSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKI KLI+E IV+DWDDPRLFTLTALR
Sbjct: 503 RSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKILKLIQEGIVSDWDDPRLFTLTALR 562

Query: 580 RRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFD 639
           RRGFPPEAIN FCA+MGVTGAQA V P  LEA VR+VLN TA R MVV++P+ L I NF 
Sbjct: 563 RRGFPPEAINNFCAQMGVTGAQATVDPTALEAAVRDVLNLTAARHMVVLEPIKLTIRNFP 622

Query: 640 QLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAG 699
           Q  V  K TVPDFPN+  +G H+I FD  IYIE +DFK I+EKG+RRL P Q VGL++ G
Sbjct: 623 QEKV-IKLTVPDFPNEPERGHHEITFDEIIYIEATDFKEIEEKGFRRLTPKQSVGLKHTG 681

Query: 700 LVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPE 759
           +++  + +    +G IT+I V+  PV   NKPKAFIHWV+ P+   VRLY  LF HKNPE
Sbjct: 682 VIVTFESIEKDASGNITNIIVRQDPVSEKNKPKAFIHWVSHPVLASVRLYERLFKHKNPE 741

Query: 760 DTYQVPEGYLSDINPDSLKVSIGYADSGFV-GVKPYDRFQFERVGFFTVDRDSNINHKPV 818
           DT +VP G+LSDINP S K  + Y D+      K YD+FQFER+GFF++D D+  N K V
Sbjct: 742 DTNEVPHGFLSDINPFSKKEIVAYMDNSLAKTAKVYDKFQFERIGFFSIDPDTKSN-KLV 800

Query: 819 VNLTVSLKEDSGK 831
            N TV+LKEDSGK
Sbjct: 801 FNRTVTLKEDSGK 813

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619562|gb|EHJ72088.1| hypothetical protein KGM_05260 [Danaus plexippus]

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/784 (65%), Positives = 606/784 (77%), Gaps = 22/784 (2%)

Query: 63  DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIK 122
           +  I  F  +GL+E+KAKETLKN  ++  L   + E    +  S    G LLYHLA+KIK
Sbjct: 4   EETIENFKLLGLSEQKAKETLKNANVTKSLLAVLNEVDVKNIPS--GSGLLLYHLATKIK 61

Query: 123 SQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVN--AVNEKELEASCGVGVIVTSED 180
            Q +  L  + KYI +  LDSTLRVDAAL+Y+L++VN   VN ++   +CG+ V++T E 
Sbjct: 62  PQIADKLSFVCKYIANGDLDSTLRVDAALDYLLANVNDSNVNFEKFVDACGINVVITPEQ 121

Query: 181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
           +E+ V K + K+K ELL KRY +N G++MQ VR  LKWADGK IK+EVD+Q+L+LLGPKT
Sbjct: 122 VEQAVEKHMAKYKEELLAKRYHFNSGIIMQAVRADLKWADGKAIKNEVDIQILDLLGPKT 181

Query: 241 EADLAPVPKVKVNEKKSK------PKSNETQEN-------GFEFVEENVNIGDLMKKLPF 287
           +ADLAPV K    EKKSK      PK +E Q +           +   +++ +LMKKLPF
Sbjct: 182 DADLAPVRKA---EKKSKGDGNKKPKLDENQGSKPTDLLSASGDIVSALSVPELMKKLPF 238

Query: 288 HKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYA 347
           H PGENFKSDGYVVT  T  LL EH+K T GKVRTRFPPEPNGILHIGHAKAININFGYA
Sbjct: 239 HAPGENFKSDGYVVTPNTKKLLEEHVKATKGKVRTRFPPEPNGILHIGHAKAININFGYA 298

Query: 348 AAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIK 407
           AAH+GICFLRYDDTNPEKEEEKFF GIKDMV+WLGYKPY+ITHSSDYF QLYEWAVKLIK
Sbjct: 299 AAHDGICFLRYDDTNPEKEEEKFFVGIKDMVEWLGYKPYKITHSSDYFDQLYEWAVKLIK 358

Query: 408 KGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG 467
           K LAYVCHQKS+E+KGFNP PSPWR RPVEE+++LFE MKNG IDEGEATLRMKITLEEG
Sbjct: 359 KDLAYVCHQKSEEIKGFNPPPSPWRNRPVEESLQLFEDMKNGKIDEGEATLRMKITLEEG 418

Query: 468 KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLC 527
           KQDPVAYRIKF PHHRTG+ WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLC
Sbjct: 419 KQDPVAYRIKFKPHHRTGNKWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLC 478

Query: 528 NALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEA 587
           NALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIE+ IV+DWDDPRLFTLT+LRRRG PP+A
Sbjct: 479 NALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEQGIVSDWDDPRLFTLTSLRRRGAPPQA 538

Query: 588 INKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKF 647
           IN FCA +GVTGA   + P++L+A +R+VLN TAPRVMVV++PL + IVNF   +   K 
Sbjct: 539 INSFCAGLGVTGASGALDPSVLDAAIRDVLNVTAPRVMVVLEPLKITIVNF-PTDKPVKI 597

Query: 648 TVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV 707
            VPDFP +  +GSH +  DR +YIE SDFK  +EKGYRRL P Q VGLR+AG V+ V+ V
Sbjct: 598 EVPDFPTEPERGSHTVILDRVLYIEASDFKEKEEKGYRRLTPTQSVGLRHAGYVITVNNV 657

Query: 708 NTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEG 767
                G +T ++      DV  KPKAFIHWV++P+++EVRLY  LF HKNPEDT +VP G
Sbjct: 658 IKDNTGKVTELECTCEASDVAKKPKAFIHWVSKPVTVEVRLYELLFEHKNPEDTSEVPGG 717

Query: 768 YLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
           +LSD   +SL+V   YADS   G K YD+FQFER+GFF+VD DS  N + V N TVSLKE
Sbjct: 718 FLSDCRKNSLEVVKAYADSSIQGAKVYDKFQFERIGFFSVDPDSTSN-EIVFNRTVSLKE 776

Query: 828 DSGK 831
           D+ K
Sbjct: 777 DANK 780

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196536|gb|EFN78066.1| Probable glutaminyl-tRNA synthetase [Harpegnathos saltator]

 Score = 1036 bits (2680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/775 (64%), Positives = 609/775 (78%), Gaps = 12/775 (1%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQS 125
           +  F ++GL+E+KAKETLKN  ++  LK AI EA+K  P  +QD G LLYHLASKIK+Q 
Sbjct: 9   VRLFQTIGLSEQKAKETLKNVNVTKNLKLAINEAAKHGP-IIQDVGILLYHLASKIKNQI 67

Query: 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEET 184
              +P +  YI+ K LD+  R+DAAL Y+L+++N  +N  + E  CGVGVIV  E IE  
Sbjct: 68  VDKIPFVTNYIIEKKLDTVQRIDAALTYLLANINNDINVADFEEFCGVGVIVLPEQIEAE 127

Query: 185 VSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADL 244
           V KVV+ +K E+L+KRYR+N G +MQ+VR  LKWADGK +K+E D+Q L+LLGPKT+AD 
Sbjct: 128 VEKVVKVYKNEILEKRYRFNSGPLMQQVRNTLKWADGKAVKNEFDIQFLDLLGPKTDADF 187

Query: 245 APVPKV--KVNEKKSKPKSNETQENGFEFVE----ENVNIGDLMK-KLPFHKPGENFKSD 297
           APVPK   +  +K++K K +E +    E +     E   + +LMK K+ FHKPGEN+K++
Sbjct: 188 APVPKQVKQPKDKQTKVKKSEVKNEQKEILNGEKAEIQTVSELMKTKVNFHKPGENYKTE 247

Query: 298 GYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLR 357
           GYVVT  TH LL++H+K TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAH+GIC+LR
Sbjct: 248 GYVVTPNTHCLLQQHLKITGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHDGICYLR 307

Query: 358 YDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQK 417
           YDDTNPEKEEEKFF GI+DMV+WLGYKP +ITHSSDYF QLY+WA+ LIKKGLAYVCHQ 
Sbjct: 308 YDDTNPEKEEEKFFVGIRDMVEWLGYKPAEITHSSDYFQQLYDWAIVLIKKGLAYVCHQS 367

Query: 418 SDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIK 477
           ++++KGFNP PSPWR+RP++E+++LF  MK+GL++EGEATLRMK+TLEEGKQDPVAYRIK
Sbjct: 368 NEDIKGFNPPPSPWRDRPIQESLQLFNDMKDGLLEEGEATLRMKVTLEEGKQDPVAYRIK 427

Query: 478 FLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQ 537
           + PHHRTGD WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLCN LD+YCPVQ
Sbjct: 428 YSPHHRTGDHWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNTLDVYCPVQ 487

Query: 538 WEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGV 597
           WEYGRLNV+YTVVSKRKIAKLI+E IV+DWDDPRLFTLTALRRRGFPPEAIN FCA+MGV
Sbjct: 488 WEYGRLNVSYTVVSKRKIAKLIQEGIVSDWDDPRLFTLTALRRRGFPPEAINNFCAQMGV 547

Query: 598 TGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDAT 657
           TGAQ  V P  LEA VR+VLN  A R MVV++P+ L I NF Q     K +VPDFPN+  
Sbjct: 548 TGAQVTVDPAALEAAVRDVLNLIATRSMVVLEPIKLTINNFPQ-EKPIKLSVPDFPNEPQ 606

Query: 658 KGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITS 717
           +G H+I FD  +YIE SDFK ++EKG+RRL P Q VGL++AG+VL    +    +G IT+
Sbjct: 607 RGHHEITFDEIVYIEASDFKEVEEKGFRRLTPKQPVGLKHAGVVLTFQSIEKDASGNITN 666

Query: 718 IDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSL 777
           + VK  PV   NKPKAFIHWV+ P    VRLY  LF HKNPEDT +VP G+LSDINP S 
Sbjct: 667 VTVKQEPVSESNKPKAFIHWVSHPALASVRLYERLFKHKNPEDTNEVPNGFLSDINPASK 726

Query: 778 KVSIGYADSGFVG-VKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
           K  + Y D+  VG  K YD+FQFER+GFF+VD D+    K V N TV+LKED+GK
Sbjct: 727 KEVVAYVDASLVGTAKVYDKFQFERIGFFSVDPDTRPG-KLVFNRTVTLKEDAGK 780

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861242|ref|XP_003706095.1| PREDICTED: probable glutamine--tRNA ligase-like [Megachile rotundata]

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/776 (65%), Positives = 607/776 (78%), Gaps = 16/776 (2%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEA---SKISPHSLQDCGSLLYHLASKIK 122
           +  F S+GL+E+KAKETLKN+ +S+ LK A+ EA     ISP    + G LLYHLASKIK
Sbjct: 7   VKLFESIGLSEQKAKETLKNKQVSSNLKLAVTEAKIHGTISP----EVGILLYHLASKIK 62

Query: 123 SQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDI 181
           +Q S  LP L KYIV K LD+  RVDA L Y+LSH+   V+    E  CG+G+ V+ E+I
Sbjct: 63  NQISDKLPFLTKYIVEKKLDTIQRVDAGLNYLLSHIKENVDISNFEKQCGIGITVSPEEI 122

Query: 182 EETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTE 241
           E  V KV+  HK E+L+KRY +N+G +MQ+VR+ LKWADGK IK+E DVQ+L+LLGPK +
Sbjct: 123 EHEVEKVIHAHKIEILEKRYHFNVGPLMQQVRSTLKWADGKAIKNEFDVQMLDLLGPKCD 182

Query: 242 ADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENV----NIGDLMK-KLPFHKPGENFKS 296
           +DLAP PK     K   P+  +  +       E +     I +LMK K+ FHKPGEN+K+
Sbjct: 183 SDLAPPPKSTKQTKTKTPEKEKVDQKNVSLTNEKIVGAQTISELMKTKVHFHKPGENYKT 242

Query: 297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFL 356
           +GYVVT  TH LL+EH+K TGGKV TRFPPEPNGILHIGHAKAININFGYAAAHNG+C+L
Sbjct: 243 EGYVVTPNTHKLLQEHLKITGGKVITRFPPEPNGILHIGHAKAININFGYAAAHNGMCYL 302

Query: 357 RYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ 416
           RYDDTNPEKEEEKFF GI++MV+WLGYKP +ITHSSDYF QL+EWA++LI+KGLAYVCHQ
Sbjct: 303 RYDDTNPEKEEEKFFIGIREMVEWLGYKPAKITHSSDYFQQLHEWAIQLIEKGLAYVCHQ 362

Query: 417 KSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI 476
            S+EMKGFNP PSPWR+RPV E+++LF  MK+GL++EGEATLRMK+TLEEGKQDPVAYRI
Sbjct: 363 SSEEMKGFNPPPSPWRDRPVSESLQLFNDMKDGLLEEGEATLRMKVTLEEGKQDPVAYRI 422

Query: 477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPV 536
           K++PHHRTGD WCIYPTYD+THCLCDSIE+ITHSLCTKEFQSRRSSYYWLCN LDIYCPV
Sbjct: 423 KYIPHHRTGDQWCIYPTYDFTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNVLDIYCPV 482

Query: 537 QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMG 596
           QWEYGRLNV+YTVVSKRKI+KLIEE IV+DWDDPRLFTLTALRRRGFPPEAIN FCA+MG
Sbjct: 483 QWEYGRLNVSYTVVSKRKISKLIEEGIVSDWDDPRLFTLTALRRRGFPPEAINNFCAQMG 542

Query: 597 VTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDA 656
           VTGAQAVV P +LEA VR+VLN TA R MVV+DP+ + I NF   N   K  V DFPN+ 
Sbjct: 543 VTGAQAVVDPAVLEASVRDVLNLTASRHMVVLDPIKVTINNFPHKN-PIKLNVFDFPNEP 601

Query: 657 TKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAIT 716
            KG H+I FD  +YIE SDFK   EK +RRL P Q VGL+Y GLVL + ++    +G I 
Sbjct: 602 EKGQHEIIFDEIVYIESSDFKEKAEKDFRRLTPNQSVGLKYIGLVLRIKEIVRDSSGNIE 661

Query: 717 SIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS 776
           ++ V+  P+   NKPKAFIHWV++PIS  VRLY  LF HKNPED ++VP G+LSD+N DS
Sbjct: 662 NLIVEQEPISETNKPKAFIHWVSKPISTFVRLYDRLFKHKNPEDPHEVPNGFLSDVNLDS 721

Query: 777 LKVSIGYADSGFVGV-KPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
            K   GYAD+    + KP+D+FQFERVGFF+VD DS +  K V N TV+LKEDSGK
Sbjct: 722 KKEITGYADASLAKLAKPFDKFQFERVGFFSVDPDS-VPGKLVFNRTVTLKEDSGK 776

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476104|gb|EFX87065.1| hypothetical protein DAPPUDRAFT_307141 [Daphnia pulex]

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/771 (64%), Positives = 606/771 (78%), Gaps = 9/771 (1%)

Query: 65  MISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ 124
           ++  F+ +GL+E KAKET KN  +ST LK  I+ AS     S +  G LLY++A+K+K Q
Sbjct: 6   LVKLFVGIGLSEIKAKETAKNSNVSTNLKTCIDAASSAGEIS-KSHGVLLYNIATKVKPQ 64

Query: 125 SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSEDIEE 183
            S  LPLL +Y+V   +DS LR++AA++Y+LS+ +  V+ K  E SCGVG++VT E IE+
Sbjct: 65  ISAQLPLLSRYVVEGKIDSELRLNAAMDYLLSNPLGDVDIKAFEESCGVGIMVTPEQIEQ 124

Query: 184 TVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEAD 243
            V KV++K+  EL++KRYR+N+G +M EVR+ LKW DGK +KSE+++QVL+LLGPKTEAD
Sbjct: 125 EVEKVIKKYHTELVEKRYRFNVGPLMSEVRSNLKWGDGKVVKSEIELQVLSLLGPKTEAD 184

Query: 244 LAPVPKVKVNEKKSKPKSNETQENGFEFVEENVN-IGDLMKKLPFHKPGENFKSDGYVVT 302
           LAP PKV   EK +KPK  +      E   ++ + I +LMKK+ FHKPGENFK+DGYV+ 
Sbjct: 185 LAPPPKV---EKVAKPKVAKPFVLPIEQDSDSASTITELMKKVQFHKPGENFKTDGYVIH 241

Query: 303 EQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTN 362
           ++T DLL++H+K TGG+VRTRFPPEPNGILHIGHAKAININFGYAAA++G+CFLRYDDTN
Sbjct: 242 DKTMDLLKQHLKETGGQVRTRFPPEPNGILHIGHAKAININFGYAAANDGVCFLRYDDTN 301

Query: 363 PEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK 422
           PEKEEEKFF GIKDMV+WLGYKPYQITHSSD FHQLYEWA  LIKKGLAYVCHQK++EMK
Sbjct: 302 PEKEEEKFFVGIKDMVEWLGYKPYQITHSSDNFHQLYEWAKVLIKKGLAYVCHQKAEEMK 361

Query: 423 GFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHH 482
           GFNP+PSP+R+RP+EE+++LFE MKNG+ +EG AT+RMK+TLEEGK DPVAYRIK++ HH
Sbjct: 362 GFNPIPSPFRDRPIEESLQLFEDMKNGMFEEGAATMRMKLTLEEGKLDPVAYRIKYVAHH 421

Query: 483 RTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGR 542
           RTGD WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGR
Sbjct: 422 RTGDQWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGR 481

Query: 543 LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQA 602
           LNV YTVVSKRKIAKLI E IV+DWDDPRLFTLTALRRRGFP EAIN FCA MGVTGAQ 
Sbjct: 482 LNVYYTVVSKRKIAKLITEKIVHDWDDPRLFTLTALRRRGFPAEAINNFCAGMGVTGAQM 541

Query: 603 VVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHD 662
            V P  LEAVV++ L+ TAPR MVV+ PL + I+NF   +  T   VPDFP +  +GSH 
Sbjct: 542 GVDPQKLEAVVKDTLDFTAPRSMVVLAPLKVTILNFPS-DRPTPIDVPDFPKEVQRGSHS 600

Query: 663 IQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKA 722
           +  DR IYI++SDF+ ++EKGYRRL   Q VGLRYAGLV+ +  V    +G +  ++V  
Sbjct: 601 VTLDRVIYIDRSDFREVEEKGYRRLTKSQAVGLRYAGLVISLKNVKKDASGQVVELEVTC 660

Query: 723 -TPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSI 781
            T      KPKAFIHWV+ P+ +EVRLY  LF H NPED  +VP G+LSDINP SL V  
Sbjct: 661 TTSATCTEKPKAFIHWVSNPMFVEVRLYERLFQHSNPEDINEVPGGFLSDINPHSLSVVE 720

Query: 782 GYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832
             AD    G K YD+FQFERVG+F+VD DS    K V N TVSLKED+GKS
Sbjct: 721 AAADKSLSGAKVYDKFQFERVGYFSVDPDST-KDKMVFNRTVSLKEDAGKS 770

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092950|ref|XP_972452.1| PREDICTED: similar to glutaminyl-trna synthetase [Tribolium castaneum] gi|270003024|gb|EEZ99471.1| hypothetical protein TcasGA2_TC000042 [Tribolium castaneum]

 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/773 (64%), Positives = 603/773 (78%), Gaps = 13/773 (1%)

Query: 60  EIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLAS 119
           ++A+ + + F   GL+E+KAKETLKN TL+  L   + E  ++     +  G+LLYHLA+
Sbjct: 6   DLANRLTTTF---GLSEQKAKETLKNVTLTQTLSTILHEVREVV--LPEGGGTLLYHLAT 60

Query: 120 KIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE 179
           KIK Q + HLPL++KYIV+K LD+T+RV+ A+EY LSH+  ++ KE E  CGVG++VT E
Sbjct: 61  KIKPQINHHLPLIIKYIVTKKLDNTVRVEKAIEYALSHIKDIDLKEFETYCGVGIVVTPE 120

Query: 180 DIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPK 239
           +IE  V  +++++K ELL+KRYR+N G +MQ+VR  L WADGK +KSE+DVQ+ +LLGPK
Sbjct: 121 EIENVVEGLLKEYKNELLEKRYRFNAGPLMQKVRAKLPWADGKAVKSEIDVQIFDLLGPK 180

Query: 240 TEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGY 299
           TE DLAP PK    +  ++PK  E         +  + I D+MKK+ FHKPGEN+K+DGY
Sbjct: 181 TEEDLAPPPKTDKKKPPTRPKVEEKVPQ-----DTALTILDVMKKINFHKPGENYKTDGY 235

Query: 300 VVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYD 359
           VVTE T  LL+EH+K TGG+V+TRFPPEPNGILHIGHAKAININFGYAAAH+G+C+LRYD
Sbjct: 236 VVTENTEKLLKEHLKATGGRVQTRFPPEPNGILHIGHAKAININFGYAAAHDGVCYLRYD 295

Query: 360 DTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD 419
           DTNPEKEEEKFFTGIKDMV WLGYKPY+ITHSSDYF QLYEWAV+LIKKG+AYVCHQ +D
Sbjct: 296 DTNPEKEEEKFFTGIKDMVTWLGYKPYKITHSSDYFDQLYEWAVELIKKGMAYVCHQTAD 355

Query: 420 EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFL 479
           EMKGFNP PSPWR+RPVEE+++LF+ MKNG IDEG ATLRMKITLEEGK DPVAYRI+F 
Sbjct: 356 EMKGFNPQPSPWRDRPVEESLQLFQDMKNGKIDEGAATLRMKITLEEGKLDPVAYRIRFT 415

Query: 480 PHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE 539
           PHHRTG+ WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLCNAL+IYCPVQWE
Sbjct: 416 PHHRTGNKWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNALNIYCPVQWE 475

Query: 540 YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599
           YGRLNVNYTVVSKRKIAKLIEE IVNDWDDPRLFTLTALRRRGFPPEAIN FCA++GVTG
Sbjct: 476 YGRLNVNYTVVSKRKIAKLIEEGIVNDWDDPRLFTLTALRRRGFPPEAINNFCAQLGVTG 535

Query: 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKG 659
           AQ+ V P MLEA VR+ LN+TAPR MVV+DPL + I NF       K  VP+FPN    G
Sbjct: 536 AQSTVDPAMLEAYVRDYLNNTAPRRMVVLDPLEIVIENFPS-GKPPKVNVPNFPNKPELG 594

Query: 660 SHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSID 719
            H + F   IYIE+SDF     K YRRL   Q VGLR+AG VL+V +V    +G + ++ 
Sbjct: 595 EHSVAFGSRIYIERSDFLEEGNKSYRRLTKSQSVGLRHAGYVLDVKEVRKNGSGQVVTVV 654

Query: 720 VKATPVD-VDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLK 778
            K T V+  + KPKAFIHWV  PI +EVRLYSTLF HKNPED  +VP G+++D N ++L 
Sbjct: 655 CKCTEVEKTETKPKAFIHWVCEPIEVEVRLYSTLFKHKNPEDPSEVPGGFVTDCNDNTLT 714

Query: 779 VSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
           +   +AD      K YD FQFER GFF+VD D+  + K + N TV LKED+GK
Sbjct: 715 ILRSFADKSLETAKIYDTFQFERNGFFSVDPDTR-SGKLIFNQTVGLKEDAGK 766

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024637|gb|EGI64834.1| Putative glutaminyl-tRNA synthetase [Acromyrmex echinatior]

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/776 (63%), Positives = 607/776 (78%), Gaps = 15/776 (1%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQS 125
           +  F ++GL+E+KAKE+LKN  ++  LK AI EA+K    + QD G LLYHLASK K+Q 
Sbjct: 9   VKLFQTIGLSEQKAKESLKNANITKNLKLAINEATKYGAIT-QDTGILLYHLASKTKNQI 67

Query: 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLSHV-NAVNEKELEASCGVGVIVTSEDIEET 184
              +P +  YIV K LDS  R+D AL ++L++V NA++  + E SCG+GVI+  E IEE 
Sbjct: 68  IDKIPFITNYIVEKKLDSVQRIDTALAHLLANVGNAIDIAKFEESCGIGVIILPEQIEEE 127

Query: 185 VSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADL 244
           V K+++ HK  +L+KRYR+N G +MQ+VR +LKWADGK IK+E DVQ+L+LLGPK +ADL
Sbjct: 128 VEKIIKVHKDAILEKRYRFNSGPLMQQVRNILKWADGKAIKNEFDVQLLDLLGPKVDADL 187

Query: 245 APVPK-VKVNEKKSKPK----SNETQE--NGFEFVEENVNIGDLMK-KLPFHKPGENFKS 296
           AP+ K VK  +K++K K    + E QE  NG +   +   I + MK K  FHKPGEN+K+
Sbjct: 188 APILKQVKPKDKQTKVKKLENAKEEQESLNGEKGGAQT--ISEFMKTKTQFHKPGENYKT 245

Query: 297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFL 356
           DGY+VT  TH LL++H+K TGGKV TRFPPEPNGILHIGHAKAININFGYAAA++GIC+L
Sbjct: 246 DGYIVTPNTHYLLQKHLKATGGKVVTRFPPEPNGILHIGHAKAININFGYAAAYDGICYL 305

Query: 357 RYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ 416
           RYDDTNPEKEEEKFF GI++MV+WLGYKP  ITHSSDYF QLY+WA++LIKK LAYVCHQ
Sbjct: 306 RYDDTNPEKEEEKFFVGIREMVEWLGYKPAVITHSSDYFQQLYDWAIELIKKDLAYVCHQ 365

Query: 417 KSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI 476
            S+EMKGFNP PSPWR+RPVEE+++LF  MK+GL++EGEATLRMK+TLEEGKQDPVAYRI
Sbjct: 366 SSEEMKGFNPPPSPWRDRPVEESLQLFNDMKDGLLEEGEATLRMKVTLEEGKQDPVAYRI 425

Query: 477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPV 536
           K+  HHRTGD+WCIYPTYDYTHCLCDSIE++THSLCTKEFQSRRSSYYWLCN+L IYCPV
Sbjct: 426 KYSLHHRTGDTWCIYPTYDYTHCLCDSIENVTHSLCTKEFQSRRSSYYWLCNSLSIYCPV 485

Query: 537 QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMG 596
           QWEYGRLNVNYTVVSKRKI KLI+E IV+DWDDPRLFTLTALRRRGFPPEAIN FCA+MG
Sbjct: 486 QWEYGRLNVNYTVVSKRKIVKLIQEGIVSDWDDPRLFTLTALRRRGFPPEAINNFCAQMG 545

Query: 597 VTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDA 656
           +TGAQA V P  LEA VR+VLN T PR MVV++P+ L I NF Q     K T PDFPN+ 
Sbjct: 546 LTGAQATVDPAALEAAVRDVLNLTTPRHMVVLEPIKLTIKNFPQEKA-IKLTAPDFPNEP 604

Query: 657 TKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAIT 716
            +G H+I FD  +YIE +DFK I+EKG+RRL P Q VGL++ G+++  + +    +G IT
Sbjct: 605 ERGHHEIIFDEIVYIEATDFKEIEEKGFRRLTPKQSVGLKHTGIIVTFESIEKDASGNIT 664

Query: 717 SIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS 776
           +I V+  PV   NKPKAFIHWV+ P+   VRLY  LF HKNPED ++VP G+LSDINP S
Sbjct: 665 NIIVRKDPVSEKNKPKAFIHWVSHPVLASVRLYERLFKHKNPEDVHEVPHGFLSDINPSS 724

Query: 777 LKVSIGYADSGFV-GVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
            K  + Y D+      K YD+FQFER+GFF+VD D+  N K V N  V+LKED+GK
Sbjct: 725 KKEIVAYMDNSLAETAKVYDKFQFERIGFFSVDPDTKPN-KLVFNRIVTLKEDTGK 779

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166500|gb|EFN60585.1| Probable glutaminyl-tRNA synthetase [Camponotus floridanus]

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/781 (63%), Positives = 604/781 (77%), Gaps = 24/781 (3%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQS 125
           +  F ++GL+E+KAKETLKN  ++  LK AI+EA K  P   QD G LLYHLASKIK+Q 
Sbjct: 9   VKLFQTIGLSEQKAKETLKNGNVTKNLKLAIDEAVKHGPVP-QDIGVLLYHLASKIKNQV 67

Query: 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNE-KELEASCGVGVIVTSEDIEET 184
              +P ++ YI  K LD+  R+DAAL Y+L+++N      E E  CG+GV+V+ E IEE 
Sbjct: 68  VDKIPFIINYINEKKLDTVQRIDAALSYLLANLNNPLNVAEFEEFCGIGVVVSPEQIEEE 127

Query: 185 VSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADL 244
           V K+++ H+ E+++KRYR+N G +MQ+VR +LKWADGK +K+E D+Q+L LLGPKT+AD 
Sbjct: 128 VEKIIKAHEKEIIEKRYRFNSGPLMQQVRNILKWADGKAVKNEFDIQLLYLLGPKTDADF 187

Query: 245 APVPKVKVNEKKSKPKSNETQENGFEFVEENV------------NIGDLMK-KLPFHKPG 291
            PV K+K      +PK  +T+    E V+E               I +LMK K+ FHKPG
Sbjct: 188 IPVSKMK------QPKDKQTKAKKSEIVKEEQKEVSNGERIEAQTISELMKTKIHFHKPG 241

Query: 292 ENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHN 351
           EN+K++GY+V   TH LL+EH+K TGG+VRTRFPPEPNGILHIGHAKAININFGYAAAH+
Sbjct: 242 ENYKTEGYIVMPNTHRLLQEHLKATGGRVRTRFPPEPNGILHIGHAKAININFGYAAAHD 301

Query: 352 GICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLA 411
           G+C+LRYDDTNPEKEEEKFFTGI++MV+WLGYKP  ITHSSDYF QLY+WAV+LI+KGLA
Sbjct: 302 GMCYLRYDDTNPEKEEEKFFTGIREMVEWLGYKPAAITHSSDYFQQLYKWAVELIEKGLA 361

Query: 412 YVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP 471
           YVCHQ S+EMKGFNP PSPWR R + E+++LF  MK+GL++EGEATLRMK+TLEEGKQDP
Sbjct: 362 YVCHQSSEEMKGFNPPPSPWRNRRIAESLQLFNDMKDGLLEEGEATLRMKVTLEEGKQDP 421

Query: 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531
           VAYRIK+ PHHRTGD WCIYPTYDYTHCLCDS+E+ITHSLCTKEFQSRRSSYYWLCNALD
Sbjct: 422 VAYRIKYSPHHRTGDQWCIYPTYDYTHCLCDSMENITHSLCTKEFQSRRSSYYWLCNALD 481

Query: 532 IYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKF 591
           IYCPVQWEYGRLNVNYTV+SKRKIAKLIEE IV+DWDDPRLFTL+ALRRRGFPPEAIN F
Sbjct: 482 IYCPVQWEYGRLNVNYTVISKRKIAKLIEEGIVSDWDDPRLFTLSALRRRGFPPEAINNF 541

Query: 592 CARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPD 651
           CA+MGVTGAQA V P +LEA VR+VLN TAPR MVV++P+ L I NF       K TVPD
Sbjct: 542 CAQMGVTGAQATVDPAVLEASVRDVLNLTAPRFMVVLEPIKLTIRNFPH-KKPLKLTVPD 600

Query: 652 FPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKC 711
           FPN+  +G H+I F+  +YIE SDFK I+EKG+RRL P Q VGL++ G+V+  + +    
Sbjct: 601 FPNEPERGHHEITFNEIVYIETSDFKEIEEKGFRRLTPKQPVGLKHVGVVVTFENIEKDA 660

Query: 712 NGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSD 771
           +G I +I V+  PV  +NKPKAFIHWV+ P+   VRLY  LF HKNPEDT +VP G+LSD
Sbjct: 661 SGNIINITVRQDPVSENNKPKAFIHWVSSPVLASVRLYERLFKHKNPEDTNEVPNGFLSD 720

Query: 772 INPDSLKVSIGYADSGFV-GVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSG 830
           INP S K  + Y D       K YD+ QFER+GFF+VD D+    K V N TV+LKED+G
Sbjct: 721 INPISKKEIVAYMDESLSKTAKVYDKIQFERIGFFSVDPDTKPG-KLVFNRTVTLKEDAG 779

Query: 831 K 831
           K
Sbjct: 780 K 780

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019257|ref|XP_002430078.1| glutaminyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212515159|gb|EEB17340.1| glutaminyl-tRNA synthetase, putative [Pediculus humanus corporis]

 Score = 1013 bits (2619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/771 (64%), Positives = 604/771 (78%), Gaps = 7/771 (0%)

Query: 65  MISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ 124
           ++    S+GL+E KAKETLKN  L+  L QAI EA+K  P   Q  G L+YHLASKIKSQ
Sbjct: 8   ILKTLQSIGLSESKAKETLKNNGLTQNLLQAITEANKYGPVDSQ-TGILVYHLASKIKSQ 66

Query: 125 SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEE 183
               +PLLV YI+S+ +DST++++AAL+Y+LS++ +  N++  E  CGVGV+V+ E IE+
Sbjct: 67  IKEQVPLLVSYIMSQKIDSTVKLEAALDYLLSNIKSDFNKENFEEYCGVGVVVSPEQIEQ 126

Query: 184 TVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEAD 243
            V  V+EK K +L+  RY +N+GL+MQ+VR  LKWADGK IKSEVD+QVL+LLGPKTE D
Sbjct: 127 CVENVMEKFKDDLIKNRYHFNIGLIMQDVRQQLKWADGKAIKSEVDLQVLDLLGPKTEED 186

Query: 244 LAPVPKVKVNEKKSKPKSNETQENGFEFVEENVN-IGDLMK-KLPFHKPGENFKSDGYVV 301
                K K  + KS  ++  + +       +  N IG+LMK K+ FHK GEN+K+DGYVV
Sbjct: 187 KKKPVKTKPEKPKSSVENKPSVQKKVAVESQGSNTIGELMKNKVHFHKVGENYKTDGYVV 246

Query: 302 TEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT 361
           T +T +LL EH+K TGGKVRTRFPPEPNGILHIGHAKAININFGYAAA++G+CFLRYDDT
Sbjct: 247 TPKTAELLAEHLKITGGKVRTRFPPEPNGILHIGHAKAININFGYAAAYDGVCFLRYDDT 306

Query: 362 NPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEM 421
           NPEKEEEKFF GIKDMV+WLGYKPY+ITHSSDYF +LYE A++LIKKGLAYVCHQK +++
Sbjct: 307 NPEKEEEKFFIGIKDMVEWLGYKPYKITHSSDYFDKLYELAIELIKKGLAYVCHQKPEDI 366

Query: 422 KGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPH 481
           KGFNP PSPWR+RP+E+N++LF+ MKNG  DEGEATLRMK+ LEEGK+DPVAYRIK++PH
Sbjct: 367 KGFNPPPSPWRDRPIEDNIRLFQDMKNGKFDEGEATLRMKVRLEEGKEDPVAYRIKYVPH 426

Query: 482 HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG 541
           HRTGD WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLCN+L++YCPVQWEYG
Sbjct: 427 HRTGDKWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNSLELYCPVQWEYG 486

Query: 542 RLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ 601
           RL+VNYTV SKRKIAKLI ENIV DWDDPRLFTL+ALRRRGFP EAIN FCA MGVTGA 
Sbjct: 487 RLSVNYTVTSKRKIAKLITENIVKDWDDPRLFTLSALRRRGFPAEAINNFCAGMGVTGAM 546

Query: 602 AVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSH 661
           + V P +LEA VR+VLN TAPR MVV++PL + I NF   +V  K  VP+FP+DA+KG+H
Sbjct: 547 SAVDPQVLEAYVRDVLNITAPRRMVVLEPLKVTITNFPSKDV-IKINVPNFPDDASKGTH 605

Query: 662 DIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVK 721
            IQF  TI+IE+SDF+   E GYRRL   Q VGLR+AG V+ +D+      G +  + VK
Sbjct: 606 TIQFSSTIFIERSDFREEHEAGYRRLTKAQPVGLRHAGYVIHLDETVKDSAGNLLELKVK 665

Query: 722 ATPV-DVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVS 780
            TPV ++  KPKAFIHWV+ P+ I VR++  LF HKNP+D  +VPEG+LSD N DSL   
Sbjct: 666 CTPVSEIKVKPKAFIHWVSNPMKITVRIFDPLFHHKNPDDPNEVPEGFLSDCNKDSLHEI 725

Query: 781 IGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
              AD    G K YD FQFER GFFTVD+DS+ + + V N TVSLKE SGK
Sbjct: 726 ESLADLSLSGSKCYDTFQFERNGFFTVDKDSD-DKRLVFNKTVSLKEASGK 775

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195109638|ref|XP_001999390.1| GI24483 [Drosophila mojavensis] gi|193915984|gb|EDW14851.1| GI24483 [Drosophila mojavensis]

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/789 (62%), Positives = 600/789 (76%), Gaps = 26/789 (3%)

Query: 62  ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKI 121
            + +I  F  +G++E+KAKETLKN  ++  L+ A+ E  K  P S    G LLYH+A+K+
Sbjct: 3   GEDLIIKFQELGMSEQKAKETLKNANVTRNLQLALAETKK--PLS-DGVGMLLYHMATKL 59

Query: 122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVL---SHVNA-VNEKELEASCGVGVIVT 177
           K Q + HLPLLV+YI  + LD+T RVDAALEY+L      NA V+  EL+  CGVGV+V+
Sbjct: 60  KPQIAAHLPLLVRYITERKLDNTQRVDAALEYLLKCGQKKNATVDVAELDRECGVGVVVS 119

Query: 178 SEDIEETVSKVVE-KHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLL 236
            E+IE  V K V+  +K  LLD+RYR+N   +MQEVR  LKWAD K +K+ +DV++ +LL
Sbjct: 120 PEEIERVVQKKVKGTYKEILLDQRYRFNSFKIMQEVRNELKWADAKSLKAAIDVEIFDLL 179

Query: 237 GPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVN------------IGDLMK- 283
           GPKTEADL P+PK   NEK+ K K+N+T  N     + + +            I +LMK 
Sbjct: 180 GPKTEADLIPLPKQ--NEKQPKAKANQTTTNAKTDAKASTSSASPPDNDGANTIAELMKT 237

Query: 284 KLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININ 343
           K+ FH PGENFK+DGYVVTE T  LLR+H+K TGG+V+TRFPPEPNGILHIGHAKAININ
Sbjct: 238 KVHFHAPGENFKTDGYVVTEHTEQLLRDHLKRTGGRVQTRFPPEPNGILHIGHAKAININ 297

Query: 344 FGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAV 403
           FGYAAAHNG+C+LRYDDTNPEKEEEKFF GI+DMV+WLGY PY+IT+SSD F QLYEWAV
Sbjct: 298 FGYAAAHNGVCYLRYDDTNPEKEEEKFFVGIRDMVEWLGYTPYKITYSSDNFQQLYEWAV 357

Query: 404 KLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT 463
            LI K LAYVCHQK+DE+KGFNP PSPWRERP+EE+++LFE MK G IDEG ATLR+K+T
Sbjct: 358 VLINKNLAYVCHQKADELKGFNPPPSPWRERPIEESLQLFEDMKRGKIDEGAATLRLKLT 417

Query: 464 LEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSY 523
           LEEGKQDPVAYRIKF+PHHRTG +WCIYPTYDYTHCLCDSIE ITHSLCTKEFQSRRSSY
Sbjct: 418 LEEGKQDPVAYRIKFIPHHRTGSNWCIYPTYDYTHCLCDSIEDITHSLCTKEFQSRRSSY 477

Query: 524 YWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGF 583
           YWLCNAL+IYCPVQWEYGRLN+NY +VSKRKIAKLI E IVNDWDDPRLFTLTALRRRG+
Sbjct: 478 YWLCNALNIYCPVQWEYGRLNMNYALVSKRKIAKLITEGIVNDWDDPRLFTLTALRRRGY 537

Query: 584 PPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNV 643
           P EAIN FCA+MGVTGAQ  V P+MLEA VR+VLN TAPR ++V+ PL + I N+     
Sbjct: 538 PAEAINNFCAQMGVTGAQISVDPSMLEAAVRDVLNLTAPRRLIVLQPLKVTISNYPHAG- 596

Query: 644 DTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLE 703
             +  VP+FP +   GSH I  DR IYIE SDFK+  EKGYRRL+P Q VGLR+AGLV+ 
Sbjct: 597 PVELEVPNFPQNPALGSHKITLDRVIYIEHSDFKLEPEKGYRRLSPQQSVGLRHAGLVIS 656

Query: 704 VDK-VNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTY 762
           + + +     G +  +  K+   +   KPKAF+ WV++PI +EVRLY  LF HKNPEDT 
Sbjct: 657 IQEIIRDPATGEVVELVCKSESAEQSEKPKAFVQWVSQPIELEVRLYEQLFKHKNPEDTN 716

Query: 763 QVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLT 822
           +VP G+LSDIN +S+ V   Y+D     VK YD+FQFER+GFF+VD D++   + V N T
Sbjct: 717 EVPGGFLSDINDNSMVVLNAYSDKSLSDVKVYDKFQFERIGFFSVDPDTS-GSRIVFNRT 775

Query: 823 VSLKEDSGK 831
           V LKEDSGK
Sbjct: 776 VGLKEDSGK 784

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	832
FB|FBgn0027090	778	Aats-gln "Glutaminyl-tRNA synt	0.918	0.982	0.613	1.1e-259
ZFIN|ZDB-GENE-040426-1011	797	qars "glutaminyl-tRNA syntheta	0.921	0.962	0.589	5.4e-253
UNIPROTKB|E2QRQ8	775	QARS "Uncharacterized protein"	0.918	0.985	0.580	2.5e-246
RGD|1359448	775	Qars "glutaminyl-tRNA syntheta	0.914	0.981	0.578	2.5e-246
UNIPROTKB|Q3MHH4	775	QARS "Glutamine--tRNA ligase"	0.915	0.983	0.579	6.8e-246
UNIPROTKB|P47897	775	QARS "Glutamine--tRNA ligase"	0.915	0.983	0.577	3.8e-243
UNIPROTKB|B4DWJ2	764	QARS "cDNA FLJ54314, highly si	0.902	0.982	0.574	6.7e-239
UNIPROTKB|F1MTC2	774	QARS "Glutamine--tRNA ligase"	0.914	0.983	0.562	2.7e-235
WB|WBGene00001336	786	qars-1 [Caenorhabditis elegans	0.913	0.966	0.572	2.7e-235
DICTYBASE|DDB_G0289481	779	glnS "glutamine-tRNA ligase" [	0.899	0.960	0.442	2.5e-168

FB|FBgn0027090 Aats-gln "Glutaminyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 2499 (884.8 bits), Expect = 1.1e-259, P = 1.1e-259
 Identities = 478/779 (61%), Positives = 582/779 (74%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQD-CGSLLYHLASKI 121
             D +I+ F ++G++E+KAKETLKN  ++  L+ ++  A   +   L D  G L+YH+A+K+
Sbjct:     4 DDLIAKFQALGMSEQKAKETLKNANVTKNLQLSLAAAGSAT---LSDGTGMLIYHMATKL 60

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLS---HVNA-VNEKELEASCGVGVIVT 177
             K Q++ HLPLLV+YIV   LD+T RVDAALEY+L     +NA ++ + LE  CGVGV+VT
Sbjct:    61 KPQTADHLPLLVRYIVEHKLDNTQRVDAALEYLLKCGQSLNANIDLQALEKECGVGVVVT 120

Query:   178 SEDIEETV-SKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLL 236
              E IE TV +K+   +K  LL++RY +N   ++Q+VR  LKWAD K +K+ +DV++ +LL
Sbjct:   121 PEQIERTVQAKIKASYKEALLEQRYHFNSFKILQDVRGELKWADAKSVKAAIDVEIFDLL 180

Query:   237 GPKTEADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXX--XXXIGDLMK-KLPFHKPGEN 293
             GPKTEADL                   T               I +LMK K+ FH PGEN
Sbjct:   181 GPKTEADLKPQTKANDKPKAAKPKAEVTPAAQTAEAASDGATTISELMKTKVHFHAPGEN 240

Query:   294 FKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGI 353
             FK+DGYVVTE T  LL+EH+  TGGKV TRFPPEPNGILHIGHAKAININFGYAAAH+G+
Sbjct:   241 FKADGYVVTEHTERLLKEHLARTGGKVHTRFPPEPNGILHIGHAKAININFGYAAAHDGV 300

Query:   354 CFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYV 413
             C+LRYDDTNPEKEEEKFF  IK+MV+WLGYKP++IT+SSD F QLYEWAV LI KGLAYV
Sbjct:   301 CYLRYDDTNPEKEEEKFFLAIKEMVEWLGYKPFKITYSSDNFQQLYEWAVVLINKGLAYV 360

Query:   414 CHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVA 473
             CHQK++E+KGFNP PSPWRERP+EE+++LFE MK G IDEG ATLRMK+TLEEGK DPVA
Sbjct:   361 CHQKAEELKGFNPKPSPWRERPIEESLRLFEDMKRGKIDEGAATLRMKVTLEEGKMDPVA 420

Query:   474 YRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY 533
             YRIKF+ HHRTG  WCIYPTYDYTHCLCDS+E ITHSLCTKEFQSRRSSYYWLCNAL IY
Sbjct:   421 YRIKFISHHRTGSDWCIYPTYDYTHCLCDSLEDITHSLCTKEFQSRRSSYYWLCNALGIY 480

Query:   534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCA 593
             CPVQWEYGRLN+NY +VSKRKIAKLI E IV+DWDDPRLFTLTALRRRGFP EAIN FCA
Sbjct:   481 CPVQWEYGRLNMNYALVSKRKIAKLITEQIVHDWDDPRLFTLTALRRRGFPAEAINNFCA 540

Query:   594 RMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFP 653
             +MGVTGAQ  V P MLEA VR+VLN TAPR +VV++PL + I NF       +  VPDFP
Sbjct:   541 QMGVTGAQIAVDPAMLEAAVRDVLNVTAPRRLVVLEPLKVTIKNFPHA-APVQLEVPDFP 599

Query:   654 NDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDK-VNTKCN 712
              +  +G+H I  D+ IYIE+ DFK+  EKGYRRLAP Q VGLR+AGLV+ VD+ V     
Sbjct:   600 QNPQQGTHKITLDKVIYIEQGDFKLEPEKGYRRLAPKQSVGLRHAGLVISVDEIVKDPAT 659

Query:   713 GAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDI 772
             G +  +   + P +   KPKAF+ WV++PI +EVRLY  LF HKNPED  +VP G+LSDI
Sbjct:   660 GQVVELICTSQPAEQAEKPKAFVQWVSQPIQLEVRLYEQLFKHKNPEDPNEVPGGFLSDI 719

Query:   773 NPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             +  S+ V + +AD      K YD+FQFER+GFF+VD D++ NH  V N TV LKED+GK
Sbjct:   720 SEQSMSVVVAFADRALNQAKVYDKFQFERIGFFSVDPDTSANHL-VFNRTVGLKEDAGK 777

GO:0004819 "glutamine-tRNA ligase activity" evidence=ISS;NAS

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;NAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-040426-1011 qars "glutaminyl-tRNA synthetase" [Danio rerio (taxid:7955)]

 Score = 2436 (862.6 bits), Expect = 5.4e-253, P = 5.4e-253
 Identities = 459/779 (58%), Positives = 580/779 (74%)

Query:    60 EIADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQD--CGSLLYHL 117
             E+AD ++S+F+S+GL+E+KAKETLKNETLS+ LK+AI+ A      S  D   G+LLY +
Sbjct:    23 EMAD-VVSSFMSIGLSEQKAKETLKNETLSSTLKKAIDLAQGQLGSSAIDKITGTLLYSM 81

Query:   118 ASKIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIV 176
              +++K  +   LP L KYI+S+ + + L++ AAL++V SH    V++++ E +CGVGV+V
Sbjct:    82 VTRLKDTN--RLPFLTKYIISRKITTELQLSAALDFVKSHPQGDVDQRKFEVACGVGVVV 139

Query:   177 TSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLL 236
             T E IE+ V  ++ KHK +LL +RYR+N+G++M E R  LKWADGK +K+EVD+QVL+LL
Sbjct:   140 TPEQIEDAVELIIRKHKDQLLAERYRFNMGILMGEARATLKWADGKIVKNEVDMQVLHLL 199

Query:   237 GPKTEADLAXXXXXXXXXX-XXXXXXXXTQXXXXXXXXXXXXIGDLMK--KLPFHKPGEN 293
             GPKTEADL                                  + + ++   L FHKPGEN
Sbjct:   200 GPKTEADLEKKSKAVKPKAPEKDVKIEQASAVNGDGNIENKSLMEQLRGEALKFHKPGEN 259

Query:   294 FKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGI 353
             +K++GYVVT  T +LL++H++ TGG+VRTRFPPEPNGILHIGHAKAIN NFG+A A+NGI
Sbjct:   260 YKTEGYVVTPNTMNLLKKHLEETGGQVRTRFPPEPNGILHIGHAKAINFNFGFAKANNGI 319

Query:   354 CFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYV 413
             CFLRYDDTNPEKEEEK+FT IKDMV+WLGY+PY +TH+SD F +LY  AV LI++G AYV
Sbjct:   320 CFLRYDDTNPEKEEEKYFTAIKDMVEWLGYEPYAVTHASDNFQRLYNLAVDLIRRGHAYV 379

Query:   414 CHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVA 473
             CHQ+ +E+KG N   SPWRERPVEE++ LFE M+ G+  EGEATLRMK+ +E+GK DPVA
Sbjct:   380 CHQRGEELKGHNVPSSPWRERPVEESLVLFEHMRKGMFAEGEATLRMKMVMEDGKMDPVA 439

Query:   474 YRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY 533
             YRIK+ PHHRTGD+WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQ+RRSSY+WLCNALD+Y
Sbjct:   440 YRIKYTPHHRTGDTWCIYPTYDYTHCLCDSIENITHSLCTKEFQARRSSYFWLCNALDVY 499

Query:   534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCA 593
             CPVQWEYGRLN+ YTVVSKRKI KL+E  +V DWDDPRLFTLTALRRRGFPP+AIN FCA
Sbjct:   500 CPVQWEYGRLNLTYTVVSKRKIIKLVETGVVRDWDDPRLFTLTALRRRGFPPQAINNFCA 559

Query:   594 RMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFP 653
             R+GVT AQ  + P++LEA VREVLNDTAPR M +++PL + I+N    N   +  VPDFP
Sbjct:   560 RVGVTVAQTTMEPHLLEACVREVLNDTAPRAMAILEPLKVTIINLPT-NAQKELRVPDFP 618

Query:   654 NDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNG 713
              +  +GSH + F +TI+IE+SDF+ + EKGY+RL P Q VGLRYAG V+ V +V     G
Sbjct:   619 ANEARGSHVVPFSKTIFIEQSDFREVMEKGYKRLTPDQSVGLRYAGYVISVQRVIKDDRG 678

Query:   714 AITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDIN 773
              +  ++V     D   KPKAFIHWV+ P+  EVRLY  LFLHKNPED  +VP G+LSDIN
Sbjct:   679 KVCELEVTCVSSDTAEKPKAFIHWVSEPLLCEVRLYERLFLHKNPEDPAEVPAGFLSDIN 738

Query:   774 PDSLKV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             P+SL V      D      K +D+FQFERVG+F+VD DS    K V N TV+LKED GK
Sbjct:   739 PNSLTVIESALVDRSVGKAKVFDKFQFERVGYFSVDADST-PEKLVFNRTVTLKEDPGK 796

GO:0000166 "nucleotide binding" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|E2QRQ8 QARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 2373 (840.4 bits), Expect = 2.5e-246, P = 2.5e-246
 Identities = 450/775 (58%), Positives = 561/775 (72%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDC-GSLLYHLASKI 121
             DS+ S F  +GL+E KA+ETLKN  LS  L++A  +A +    ++    G+LLY LAS++
Sbjct:     5 DSL-SLFTGLGLSEHKARETLKNTALSAQLREAATQAQQTLGSTIDKATGTLLYGLASRL 63

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
             +      L  LV YI +K + + L++ AALEYV SH ++ +N ++ E  CGVGV+VT E 
Sbjct:    64 RDPR--RLSFLVSYIANKKIHTELQLSAALEYVRSHPLDPINTEDFEQECGVGVMVTPEQ 121

Query:   181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
             IEE V   + +H+ +LL++RYR+N+GL+M E R +LKWADGK IK EVD+QVL+LLGPKT
Sbjct:   122 IEEAVEAAINRHRPQLLEERYRFNMGLLMGEARAVLKWADGKMIKHEVDMQVLHLLGPKT 181

Query:   241 EADLAXXXXXXXXX--XXXXXXXXXTQXXXXXXXXXXXXIGDLM-KKLPFHKPGENFKSD 297
             E DL                                   I  L  + L FHKPGEN+K+ 
Sbjct:   182 ETDLEKKPKVSKARPEEKDQRTAKVLMENGEAADQTLSLIEQLRGEALKFHKPGENYKTP 241

Query:   298 GYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLR 357
             GYV T  T DLL++H++ TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICFLR
Sbjct:   242 GYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLR 301

Query:   358 YDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQK 417
             +DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI +G AYVCHQ+
Sbjct:   302 FDDTNPEKEEAKFFTAICDMVTWLGYTPYKVTYASDYFDQLYAWAVELIHRGQAYVCHQR 361

Query:   418 SDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIK 477
              +E+KG N LPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR+K
Sbjct:   362 GEELKGHNSLPSPWRDRPIEESLLLFEAMRKGKFAEGEATLRMKLVMEDGKMDPVAYRVK 421

Query:   478 FLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQ 537
             + PHHRTGD+WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCPVQ
Sbjct:   422 YTPHHRTGDTWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCPVQ 481

Query:   538 WEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGV 597
             WEYGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+GV
Sbjct:   482 WEYGRLNLHYAVVSKRKILQLVAAGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVGV 541

Query:   598 TGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDAT 657
             T AQ  + P++LEA VR+VLNDTAPR M V++PL + I NF          VP+FP D T
Sbjct:   542 TVAQTTMEPHLLEACVRDVLNDTAPRAMAVLEPLQVIITNFPSTK-SLDIQVPNFPADET 600

Query:   658 KGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITS 717
             KG H I F   I+IE++DFK   E GY+RLA GQ VGLR+ G V+E+  V    +G + S
Sbjct:   601 KGFHQIPFGSMIFIERTDFKEEPEPGYKRLAWGQPVGLRHTGYVIELQHVVKGPSGCVES 660

Query:   718 IDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSL 777
             ++V     D   KPKAFIHWV++P++ E+RLY  LF HKNPED  +VP G+LSD+NP SL
Sbjct:   661 LEVTCRRADAAEKPKAFIHWVSQPLTCEIRLYERLFQHKNPEDPAEVPGGFLSDLNPASL 720

Query:   778 KV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             +V      D      KP+D+FQFER+G+F++D DS    + V N TV+LKED GK
Sbjct:   721 QVVEAALVDCSVALAKPFDKFQFERLGYFSLDPDS-CQGQLVFNRTVTLKEDPGK 774

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA

RGD|1359448 Qars "glutaminyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 2373 (840.4 bits), Expect = 2.5e-246, P = 2.5e-246
 Identities = 450/778 (57%), Positives = 567/778 (72%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDC-GSLLYHLASKI 121
             DS+ + F  +GL+E KA+ETLKN  LST L++A  +A +    ++    G+LLY LAS++
Sbjct:     5 DSL-ALFTGLGLSENKARETLKNAALSTQLREAATQAQQTLGSTIDKATGTLLYGLASRL 63

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
             +      L  LV YI +K + + L++ AALEYV SH ++ ++ K+ E  CGVGV+VT E 
Sbjct:    64 RDTR--RLSFLVGYIANKKIHTELQLSAALEYVRSHPLDPIDTKDFEQECGVGVVVTPEQ 121

Query:   181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
             IEE V   + +H+ +LL +RYR+++GL+M E R  L+WADGK IK+EVD+QVL+LLGPK 
Sbjct:   122 IEEAVEATINRHRPQLLVERYRFSMGLLMGEARAALRWADGKMIKNEVDMQVLHLLGPKM 181

Query:   241 EADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMKKL-----PFHKPGENFK 295
             EADL                                    LM++L      FHKPGEN+K
Sbjct:   182 EADLEKKPKVAKARLEETDRKTAKDVVENGEVAGQTL--SLMEQLRGEALKFHKPGENYK 239

Query:   296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICF 355
             + GYV T  T DLL++H++ TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICF
Sbjct:   240 TPGYVTTPHTMDLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICF 299

Query:   356 LRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH 415
             LR+DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++G AYVCH
Sbjct:   300 LRFDDTNPEKEEAKFFTAIYDMVTWLGYTPYKVTYASDYFDQLYAWAVELIRRGQAYVCH 359

Query:   416 QKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
             Q+ +E+KG NPLPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR
Sbjct:   360 QRGEELKGHNPLPSPWRDRPIEESLLLFEAMRKGKFAEGEATLRMKLVMEDGKMDPVAYR 419

Query:   476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
             +K+ PHHRTGD WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCP
Sbjct:   420 VKYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCP 479

Query:   536 VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM 595
             VQWEYGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+
Sbjct:   480 VQWEYGRLNLHYAVVSKRKILQLVAAGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARV 539

Query:   596 GVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLN-VDTKFTVPDFPN 654
             GVT AQ  + P++LEA VR+VLNDTAPR M V++PL + I NF     +D +  VP+FP 
Sbjct:   540 GVTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLEPLQVVITNFPAPKPLDIR--VPNFPA 597

Query:   655 DATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGA 714
             D TKG H + F  T++IE++DFK   E GY+RLA GQ VGLR+ G V+E+  V    +G 
Sbjct:   598 DETKGFHQVPFASTVFIERTDFKEESEPGYKRLAWGQPVGLRHTGYVIELQHVVRGSSGC 657

Query:   715 ITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINP 774
             +  ++V     D   KPKAFIHWV++P+  E+RLY  LF HKNPED  +VP G+LSD+NP
Sbjct:   658 VECLEVTCRRADAGEKPKAFIHWVSQPLVCEIRLYERLFQHKNPEDPVEVPGGFLSDLNP 717

Query:   775 DSLKVSIG-YADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
              SL+V  G   D      KP+D+FQFER+G+F+VD DS+   + V N TV+LKED GK
Sbjct:   718 ASLQVIKGALVDCSVALAKPFDKFQFERLGYFSVDPDSH-QGQVVFNRTVTLKEDPGK 774

GO:0005737 "cytoplasm" evidence=ISO

UNIPROTKB|Q3MHH4 QARS "Glutamine--tRNA ligase" [Bos taurus (taxid:9913)]

 Score = 2369 (839.0 bits), Expect = 6.8e-246, P = 6.8e-246
 Identities = 450/777 (57%), Positives = 560/777 (72%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDC-GSLLYHLASKI 121
             DS+ S F  +GL+E+KA+ETLKN  LS  L++A  +A +    S+    G+LLY LAS++
Sbjct:     5 DSL-SLFTGLGLSEQKARETLKNTVLSAQLREAATQAQQTLGSSIDKATGTLLYGLASRL 63

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
             +      L  LV YI S+ + +  ++ AALEYV SH ++ +N ++ E  CGVGV+VT E 
Sbjct:    64 RDPR--RLSFLVSYITSRKIHTETQLSAALEYVRSHPLDPINTEDFEQECGVGVVVTPEQ 121

Query:   181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
             IEE V   + +H+A+LL +RY +++GL+M E R  LKWADGK IK EVD+QVL+LLGPKT
Sbjct:   122 IEEAVEAAINRHRAKLLVERYHFSMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPKT 181

Query:   241 EADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMKKL-----PFHKPGENFK 295
             E DL                                    LM++L      FHKPGEN+K
Sbjct:   182 ETDLEKKPKVAKARPEETDQRTAKDVVENGEVVVQTL--SLMEQLRGEALKFHKPGENYK 239

Query:   296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICF 355
             + GYV T  T DLL++H+  TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICF
Sbjct:   240 TPGYVTTPHTMDLLKQHLDITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICF 299

Query:   356 LRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH 415
             LR+DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++  AYVCH
Sbjct:   300 LRFDDTNPEKEEAKFFTAIYDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRDQAYVCH 359

Query:   416 QKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
             Q+ +E+KG NPLPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR
Sbjct:   360 QRGEELKGHNPLPSPWRDRPIEESLLLFEAMRKGKFAEGEATLRMKLVMEDGKMDPVAYR 419

Query:   476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
             +K+ PHHRTGD+WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCP
Sbjct:   420 VKYTPHHRTGDTWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCP 479

Query:   536 VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM 595
             VQWEYGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+
Sbjct:   480 VQWEYGRLNLHYAVVSKRKILQLVAAGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARV 539

Query:   596 GVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND 655
             GVT AQ  + P++LEA VR+VLNDTAPR M V++PL + I NF          VP+FP D
Sbjct:   540 GVTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLEPLQVVITNFPATKA-LDIQVPNFPAD 598

Query:   656 ATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAI 715
              TKG H + F  T++IE+ DFK   E GY+RLA GQ VGLR+ G V+E+  V    +G +
Sbjct:   599 ETKGFHQVPFGSTVFIERMDFKEEPEPGYKRLAWGQPVGLRHTGYVIELQHVVKGPSGCV 658

Query:   716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
              S+ V     D   KPKAFIHWV++P++ E+RLY  LF HKNPED  +VP G+LSD+NP 
Sbjct:   659 ESLKVTCRRADAGEKPKAFIHWVSQPLTCEIRLYERLFQHKNPEDPAEVPGGFLSDLNPA 718

Query:   776 SLKV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             SL+V      D      KP+D+FQFER+G+F+VD DSN   + V N TV+LKED GK
Sbjct:   719 SLQVVEAALVDCSVALAKPFDKFQFERLGYFSVDPDSN-QGQLVFNRTVTLKEDPGK 774

GO:0005737 "cytoplasm" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|P47897 QARS "Glutamine--tRNA ligase" [Homo sapiens (taxid:9606)]

 Score = 2343 (829.8 bits), Expect = 3.8e-243, P = 3.8e-243
 Identities = 449/777 (57%), Positives = 559/777 (71%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDC-GSLLYHLASKI 121
             DS+ S F S+GL+E+KA+ETLKN  LS  L++A  +A +    ++    G LLY LAS++
Sbjct:     5 DSL-SLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLASRL 63

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
             +      L  LV YI SK + +  ++ AALEYV SH ++ ++  + E  CGVGVIVT E 
Sbjct:    64 RDTR--RLSFLVSYIASKKIHTEPQLSAALEYVRSHPLDPIDTVDFERECGVGVIVTPEQ 121

Query:   181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
             IEE V   + +H+ +LL +RY +N+GL+M E R +LKWADGK IK+EVD+QVL+LLGPK 
Sbjct:   122 IEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPKL 181

Query:   241 EADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMKKL-----PFHKPGENFK 295
             EADL                                    LM++L      FHKPGEN+K
Sbjct:   182 EADLEKKFKVAKARLEETDRRTAKDVVENGETADQTL--SLMEQLRGEALKFHKPGENYK 239

Query:   296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICF 355
             + GYVVT  T +LL++H++ TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICF
Sbjct:   240 TPGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICF 299

Query:   356 LRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH 415
             LR+DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++GLAYVCH
Sbjct:   300 LRFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCH 359

Query:   416 QKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
             Q+ +E+KG N LPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR
Sbjct:   360 QRGEELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYR 419

Query:   476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
             +K+ PHHRTGD WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCP
Sbjct:   420 VKYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCP 479

Query:   536 VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM 595
             VQWEYGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+
Sbjct:   480 VQWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARV 539

Query:   596 GVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND 655
             GVT AQ  + P++LEA VR+VLNDTAPR M V++ L + I NF          VP+FP D
Sbjct:   540 GVTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAK-SLDIQVPNFPAD 598

Query:   656 ATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAI 715
              TKG H + F   ++IE++DFK   E G++RLA GQ VGLR+ G V+E+  V    +G +
Sbjct:   599 ETKGFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCV 658

Query:   716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
              S++V     D   KPKAFIHWV++P+  EVRLY  LF HKNPED  +VP G+LSD+N  
Sbjct:   659 ESLEVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLA 718

Query:   776 SLKV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             SL V      D      KP+D+FQFER+G+F+VD DS+   K V N TV+LKED GK
Sbjct:   719 SLHVVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSH-QGKLVFNRTVTLKEDPGK 774

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|B4DWJ2 QARS "cDNA FLJ54314, highly similar to Glutaminyl-tRNA synthetase (EC 6.1.1.18)" [Homo sapiens (taxid:9606)]

 Score = 2303 (815.8 bits), Expect = 6.7e-239, P = 6.7e-239
 Identities = 446/777 (57%), Positives = 553/777 (71%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDC-GSLLYHLASKI 121
             DS+ S F S+GL+E+KA+ETLKN  LS  L++A  +A +    ++    G LLY LAS++
Sbjct:     5 DSL-SLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGSTIDKATGILLYGLASRL 63

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
             +      L  LV YI +           ALEYV SH ++ ++  + E  CGVGVIVT E 
Sbjct:    64 RDTR--RLSFLVSYIAT-----------ALEYVRSHPLDPIDTVDFERECGVGVIVTPEQ 110

Query:   181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
             IEE V   + +H+ +LL +RY +N+GL+M E R +LKWADGK IK+EVD+QVL+LLGPK 
Sbjct:   111 IEEAVEAAINRHRPQLLVERYHFNMGLLMGEARAVLKWADGKMIKNEVDMQVLHLLGPKL 170

Query:   241 EADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMKKL-----PFHKPGENFK 295
             EADL                                    LM++L      FHKPGEN+K
Sbjct:   171 EADLEKKFKVAKARLEETDRRTAKDVVENGETADQTL--SLMEQLRGEALKFHKPGENYK 228

Query:   296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICF 355
             + GYVVT  T +LL++H++ TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICF
Sbjct:   229 TPGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICF 288

Query:   356 LRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH 415
             LR+DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++GLAYVCH
Sbjct:   289 LRFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCH 348

Query:   416 QKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
             Q+ +E+KG N LPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR
Sbjct:   349 QRGEELKGHNTLPSPWRDRPMEESLLLFEAMRKGKFSEGEATLRMKLVMEDGKMDPVAYR 408

Query:   476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
             +K+ PHHRTGD WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCP
Sbjct:   409 VKYTPHHRTGDKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCP 468

Query:   536 VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM 595
             VQWEYGRLN++Y VVSKRKI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+
Sbjct:   469 VQWEYGRLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARV 528

Query:   596 GVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND 655
             GVT AQ  + P++LEA VR+VLNDTAPR M V++ L + I NF          VP+FP D
Sbjct:   529 GVTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAK-SLDIQVPNFPAD 587

Query:   656 ATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAI 715
              TKG H + F   ++IE++DFK   E G++RLA GQ VGLR+ G V+E+  V    +G +
Sbjct:   588 ETKGFHQVPFAPIVFIERTDFKEEPEPGFKRLAWGQPVGLRHTGYVIELQHVVKGPSGCV 647

Query:   716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
              S++V     D   KPKAFIHWV++P+  EVRLY  LF HKNPED  +VP G+LSD+N  
Sbjct:   648 ESLEVTCRRADAGEKPKAFIHWVSQPLMCEVRLYERLFQHKNPEDPTEVPGGFLSDLNLA 707

Query:   776 SLKV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             SL V      D      KP+D+FQFER+G+F+VD DS+   K V N TV+LKED GK
Sbjct:   708 SLHVVDAALVDCSVALAKPFDKFQFERLGYFSVDPDSH-QGKLVFNRTVTLKEDPGK 763

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MTC2 QARS "Glutamine--tRNA ligase" [Bos taurus (taxid:9913)]

 Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
 Identities = 437/777 (56%), Positives = 548/777 (70%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDC-GSLLYHLASKI 121
             DS+ S F  +GL+E+KA+ETLKN  LS  L++A  +A +    S+    G+LLY LAS++
Sbjct:     5 DSL-SLFTGLGLSEQKARETLKNTVLSAQLREAATQAQQTLGSSIDKATGTLLYGLASRL 63

Query:   122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
             +      L  LV YI S+ + +  ++ AALEYV SH ++ +N ++ E  CGVGV+VT E 
Sbjct:    64 RDPR--RLSFLVSYITSRKIHTETQLSAALEYVRSHPLDPINTEDFEQECGVGVVVTPEQ 121

Query:   181 IEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKT 240
             IEE V   + +H+A+LL +RY +++GL+M E R  LKWADGK IK EVD+QVL+LLGPKT
Sbjct:   122 IEEAVEAAINRHRAKLLVERYHFSMGLLMGEARAALKWADGKMIKHEVDMQVLHLLGPKT 181

Query:   241 EADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMKKL-----PFHKPGENFK 295
             E DL                                    LM++L      FHKPGEN+K
Sbjct:   182 ETDLEKKPKVAKARPEETDQRTAKDVVENGEVVVQTL--SLMEQLRGEALKFHKPGENYK 239

Query:   296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICF 355
             + GYV T  T DLL++H+  TGG+VRTRFPPEPNGILHIGHAKAIN NFGYA A+NGICF
Sbjct:   240 TPGYVTTPHTMDLLKQHLDITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICF 299

Query:   356 LRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH 415
             LR+DDTNPEKEE KFFT I DMV WLGY PY++T++SDYF QLY WAV+LI++  AYVCH
Sbjct:   300 LRFDDTNPEKEEAKFFTAIYDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRDQAYVCH 359

Query:   416 QKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
             Q+ +E+KG NPLPSPWR+RP+EE++ LFEAM+ G   EGEATLRMK+ +E+GK DPVAYR
Sbjct:   360 QRGEELKGHNPLPSPWRDRPIEESLLLFEAMRKGKFAEGEATLRMKLVMEDGKMDPVAYR 419

Query:   476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
             +K+ PHHRTGD+WCIYPTYDYTHCLCDSIEHITHSLCTKEFQ+RRSSY+WLCNALD+YCP
Sbjct:   420 VKYTPHHRTGDTWCIYPTYDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVYCP 479

Query:   536 VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM 595
             VQWEYGRLN++Y VVS +KI +L+    V DWDDPRLFTLTALRRRGFPPEAIN FCAR+
Sbjct:   480 VQWEYGRLNLHYAVVSXKKILQLVAAGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARV 539

Query:   596 GVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND 655
             GVT AQ  + P++LEA VR+VLNDTAPR M V++PL + I NF    V     V   P  
Sbjct:   540 GVTVAQTTMEPHLLEACVRDVLNDTAPRAMAVLEPLQVVITNFPATKVSLLQGVRFAPEL 599

Query:   656 ATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAI 715
             + +  H   F + +       +   E GY+RLA GQ VGLR+ G V+E+  V    +G +
Sbjct:   600 SLRTHHP--FFKPVSARHRGGRSEPEPGYKRLAWGQPVGLRHTGYVIELQHVVKGPSGCV 657

Query:   716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
              S+ V     D   KPKAFIHWV++P++ E+RLY  LF HKNPED  +VP G+LSD+NP 
Sbjct:   658 ESLKVTCRRADAGEKPKAFIHWVSQPLTCEIRLYERLFQHKNPEDPAEVPGGFLSDLNPA 717

Query:   776 SLKV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             SL+V      D      KP+D+FQFER+G+F+VD DSN   + V N TV+LKED GK
Sbjct:   718 SLQVVEAALVDCSVALAKPFDKFQFERLGYFSVDPDSN-QGQLVFNRTVTLKEDPGK 773

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA

WB|WBGene00001336 qars-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
 Identities = 446/779 (57%), Positives = 548/779 (70%)

Query:    70 LSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHL 129
             LS+GL++ K  ETLKN  L+  +   ++ AS+    S Q  G+LLY LA+K+K Q + H 
Sbjct:     8 LSLGLSDSKVAETLKNVKLTETIGSIVKLASESGEISKQK-GTLLYQLATKLKPQVAAHT 66

Query:   130 PLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSEDIEETVSKV 188
             PL+VKYI++  + +  ++ AA+EY+LSH V  +   + E SCGVGV+VT +DIE  V+KV
Sbjct:    67 PLVVKYIMNDGIKTEPQLSAAIEYLLSHTVKGIQVPDFEKSCGVGVVVTIDDIEAAVTKV 126

Query:   189 VEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAXX- 247
             + +H+ +++ +RY +  G ++ E+R LL WADG   K EVD++ L LLGPKT  DLA   
Sbjct:   127 IGQHREKIVAERYSFPAGKLLGELRALLPWADGAITKKEVDLRFLELLGPKTAEDLAPKK 186

Query:   248 ----------XXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMK-KLPFHKPGENFKS 296
                                        +            + +L++ +  FHK GENFK 
Sbjct:   187 KEKKPEGPKPSKDAAAAATAPGTKNQKEASPEEFADGAETMDELLRTRAHFHKVGENFKQ 246

Query:   297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFL 356
             DGYV T +T +LL+ H+   GGKV TRFPPEPNG+LHIGHAKAININFGYA A  G+C L
Sbjct:   247 DGYVTTPKTAELLKAHVAAVGGKVVTRFPPEPNGVLHIGHAKAININFGYAKAMGGVCNL 306

Query:   357 RYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ 416
             R+DDTNPEKEEEKFF+ I+D+V WLGY P ++THSSD F QLY WAVKLI+KGLA+VCHQ
Sbjct:   307 RFDDTNPEKEEEKFFSAIEDIVHWLGYDPARVTHSSDNFQQLYLWAVKLIQKGLAFVCHQ 366

Query:   417 KSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI 476
             K +EM+GF    SPWRERP+EEN++LFE MKNG  DEGEATLR+K+TLEEGK DPVAYRI
Sbjct:   367 KVEEMRGFEVQLSPWRERPIEENIQLFEDMKNGKFDEGEATLRLKLTLEEGKVDPVAYRI 426

Query:   477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPV 536
             K++PHHRTG+ WCIYPTYDYTHCLCDSIE+ITHSLCTKEFQSRRSSYYWLCNALDIYCPV
Sbjct:   427 KYVPHHRTGNQWCIYPTYDYTHCLCDSIENITHSLCTKEFQSRRSSYYWLCNALDIYCPV 486

Query:   537 QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMG 596
             QWEYGRLNVNYTVVSKRKI KLI    VNDWDDPRLFTLTALRRRG P EAIN+F A++G
Sbjct:   487 QWEYGRLNVNYTVVSKRKILKLITTKTVNDWDDPRLFTLTALRRRGIPSEAINRFVAKLG 546

Query:   597 VTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDA 656
             +T +Q V+ P++L+A VR+ LN  APR M V++ L L I NF +LN+ +   VPDFP+D 
Sbjct:   547 LTMSQMVIDPHVLDATVRDYLNIHAPRTMAVLEGLKLTIENFSELNLPSSVDVPDFPSDP 606

Query:   657 TKG-SHDIQFDRTIYIEKSDFKVIQ-EKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGA 714
             T    H +  DR I+IEKSD+K    +K +RRL P Q VGL++ GLVL   K      G 
Sbjct:   607 TDPRKHSVSVDREIFIEKSDYKPDDSDKSFRRLTPKQAVGLKHIGLVLRFVKEVKDAEGH 666

Query:   715 ITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINP 774
             +T + VKA  +   +KPKAFIHWVA+P+S EVRLY  LF  KNPED   VP G+LSDINP
Sbjct:   667 VTEVVVKAEKLSEKDKPKAFIHWVAKPVSCEVRLYDRLFKSKNPEDAQLVPGGFLSDINP 726

Query:   775 DSLKVSIG-YADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS 832
             DSL V      D      K YDRFQFER+GFF VDRDS  +   V N TV LK D G S
Sbjct:   727 DSLTVVYNALIDQSIAKSKVYDRFQFERIGFFCVDRDST-SSTLVFNRTVMLK-DGGAS 783

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

DICTYBASE|DDB_G0289481 glnS "glutamine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1637 (581.3 bits), Expect = 2.5e-168, P = 2.5e-168
 Identities = 349/788 (44%), Positives = 489/788 (62%)

Query:    63 DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIK 122
             D +++ F  +GL+  KAKET  N TLS+ L++ I+EA   S    +  G LLY LA+K  
Sbjct:    10 DELVTLFSQIGLDSSKAKETTNNATLSSNLQEIIKEAGAESGCE-KSVGLLLYTLATKYP 68

Query:   123 SQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDI 181
             + +  H   LV YI +K   +++ + A L+Y+    N  +N  E E SCGVGV++T E +
Sbjct:    69 ANAMKHRATLVDYIANKKSVNSINLQACLDYLRRTANEELNVAEFEQSCGVGVVITREQV 128

Query:   182 EETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTE 241
              + VS  + K+K++LL+KRY++N+G ++ E++  LKWA+ K IK EVD  +L+LLGPKT+
Sbjct:   129 AQAVSDYINKNKSDLLEKRYQFNIGGILMEIKNSLKWANAKDIKEEVDAAILSLLGPKTD 188

Query:   242 ADLAXXXXXXXXXXXXXXXXXXTQXXXXXXXXXXXXIGDLMKKLPFH-KPG-ENFK-SDG 298
             AD A                  T              GDL   +P   KP  E  K  D 
Sbjct:   189 ADKAPPAKPVKPT---------TPTAVATTTAATTTTGDLSPIIPAELKPAKEEIKFPDP 239

Query:   299 YVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRY 358
                 + T  LL +H+K TGGK+ TRFPPEPNG LHIGHAKA+++NFGYA  + G C+LR+
Sbjct:   240 SDNIQNTPKLLADHLKTTGGKIVTRFPPEPNGYLHIGHAKAMHLNFGYAKKNGGKCYLRF 299

Query:   359 DDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKS 418
             DDTNPEKE +++   I D V+WLG++P +IT+SS  F  LYE A +LI++G AYVCHQ +
Sbjct:   300 DDTNPEKENQEYIDSIIDSVKWLGHEPCEITYSSSQFDTLYEMANELIRRGYAYVCHQTA 359

Query:   419 DEM-KGFNPLP-SPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVA 473
              E+ +G   +  SP+R R VEEN+KLFE M+ G  +EG+A LRMK  ++      +D +A
Sbjct:   360 SEISEGREKMTDSPYRNRTVEENLKLFEDMRLGKFEEGKAILRMKGDMKHPNPCMRDLIA 419

Query:   474 YRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY 533
             YRIK+  H  +GD WCIYP+YDYTHCL DSIE+ITHSLCT EF+ RR +Y WL + L +Y
Sbjct:   420 YRIKYHHHPMSGDKWCIYPSYDYTHCLVDSIENITHSLCTLEFEIRRLTYNWLIDVLGLY 479

Query:   534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCA 593
              PV WEY RLN+ +TV+SKRKI  L++  IVN WDDPRL TL A RR+G+ PEAIN  C 
Sbjct:   480 RPVVWEYARLNLTHTVLSKRKIITLVQNKIVNGWDDPRLSTLNAFRRKGYTPEAINLLCD 539

Query:   594 RMGVTGAQAV-VSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDF 652
              +GVT      +S  +LE   R+ L+  A R M V DP+ + I N+ + +   +   P+ 
Sbjct:   540 TIGVTRTNGTTISYELLELCCRQDLDGKATRAMAVFDPIKVVITNYPE-DKSEEINAPNI 598

Query:   653 PNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCN 712
             P+   KG+H I F R +YIE+SDF++   K +  LAPG+ + L+YA   ++ +KV    +
Sbjct:   599 PSKPEKGTHKIDFSRIVYIERSDFRMEDNKDFFGLAPGKEILLKYA-YNIKCEKVIQDAD 657

Query:   713 GAITSIDVKATPVDVDNKPKAF--IHWVA-----RPISIEVRLYSTLFLHKNPEDTYQVP 765
             G +T + V     D DN  K    IHWV+      P+  EVRLY  LF     +D+ ++ 
Sbjct:   658 GKVTELHVT---YDKDNSSKKLKTIHWVSSVAGTEPMKAEVRLYEHLF-----KDS-EIG 708

Query:   766 EGYLSDINPDSLKV-SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVS 824
             + +L++INP+SL++    + D   +  K YDR+QFERVG+F VD+D+  + K V N TVS
Sbjct:   709 DDWLNNINPNSLRIIPNAFIDKTVLASKEYDRYQFERVGYFVVDKDTT-SDKMVFNRTVS 767

Query:   825 LKEDSGKS 832
             LKE+  KS
Sbjct:   768 LKENKEKS 775

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=IEA;ISS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0004819 "glutamine-tRNA ligase activity" evidence=IEA;ISS

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B5R651	SYQ_SALG2	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
Q8SR10	SYQ_ENCCU	6, ., 1, ., 1, ., 1, 8	0.4321	0.6129	0.7317	yes	N/A
Q5PCH8	SYQ_SALPA	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
A8GB43	SYQ_SERP5	6, ., 1, ., 1, ., 1, 8	0.4387	0.6069	0.9115	yes	N/A
P43831	SYQ_HAEIN	6, ., 1, ., 1, ., 1, 8	0.4438	0.6165	0.9210	yes	N/A
B5QWD0	SYQ_SALEP	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
Q6LTD1	SYQ_PHOPR	6, ., 1, ., 1, ., 1, 8	0.4371	0.6045	0.9063	yes	N/A
Q5QXQ2	SYQ_IDILO	6, ., 1, ., 1, ., 1, 8	0.4342	0.6069	0.9001	yes	N/A
Q7MMQ4	SYQ_VIBVY	6, ., 1, ., 1, ., 1, 8	0.4360	0.6069	0.9082	yes	N/A
B4RYH7	SYQ_ALTMD	6, ., 1, ., 1, ., 1, 8	0.4511	0.6069	0.9099	yes	N/A
B5XZG7	SYQ_KLEP3	6, ., 1, ., 1, ., 1, 8	0.4436	0.6069	0.9099	yes	N/A
C6DBY6	SYQ_PECCP	6, ., 1, ., 1, ., 1, 8	0.4393	0.6021	0.9076	yes	N/A
P47897	SYQ_HUMAN	6, ., 1, ., 1, ., 1, 8	0.5839	0.9134	0.9806	yes	N/A
C4L887	SYQ_TOLAT	6, ., 1, ., 1, ., 1, 8	0.4431	0.6033	0.9077	yes	N/A
B5FNC1	SYQ_SALDC	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
Q4QK64	SYQ_HAEI8	6, ., 1, ., 1, ., 1, 8	0.4438	0.6165	0.9210	yes	N/A
A5F2T1	SYQ_VIBC3	6, ., 1, ., 1, ., 1, 8	0.4421	0.6033	0.9028	yes	N/A
C3LTP5	SYQ_VIBCM	6, ., 1, ., 1, ., 1, 8	0.4406	0.6081	0.9100	yes	N/A
P14325	SYQ_DICDI	6, ., 1, ., 1, ., 1, 8	0.44	0.8846	0.9448	yes	N/A
B8D7U5	SYQ_BUCAT	6, ., 1, ., 1, ., 1, 8	0.4267	0.6045	0.8809	yes	N/A
Q9Y105	SYQ_DROME	6, ., 1, ., 1, ., 1, 8	0.6192	0.9194	0.9832	yes	N/A
B5BCC3	SYQ_SALPK	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
P13188	SYQ_YEAST	6, ., 1, ., 1, ., 1, 8	0.3959	0.8810	0.9060	yes	N/A
A7MT45	SYQ_VIBHB	6, ., 1, ., 1, ., 1, 8	0.4229	0.6069	0.9082	yes	N/A
P57490	SYQ_BUCAI	6, ., 1, ., 1, ., 1, 8	0.4267	0.6045	0.8809	yes	N/A
B5FC12	SYQ_VIBFM	6, ., 1, ., 1, ., 1, 8	0.4261	0.6021	0.9076	yes	N/A
A4W846	SYQ_ENT38	6, ., 1, ., 1, ., 1, 8	0.4427	0.6081	0.9117	yes	N/A
Q3IGW8	SYQ_PSEHT	6, ., 1, ., 1, ., 1, 8	0.4406	0.6033	0.9094	yes	N/A
P57847	SYQ_PASMU	6, ., 1, ., 1, ., 1, 8	0.4460	0.6009	0.8944	yes	N/A
Q5E6P2	SYQ_VIBF1	6, ., 1, ., 1, ., 1, 8	0.4261	0.6021	0.9076	yes	N/A
Q9Y7Y8	SYQ_SCHPO	6, ., 1, ., 1, ., 1, 8	0.4101	0.9074	0.9309	yes	N/A
Q8ZQX5	SYQ_SALTY	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
B5EZC3	SYQ_SALA4	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
B6EHL7	SYQ_ALISL	6, ., 1, ., 1, ., 1, 8	0.4299	0.6021	0.9076	yes	N/A
Q87RG4	SYQ_VIBPA	6, ., 1, ., 1, ., 1, 8	0.4293	0.6081	0.9100	yes	N/A
B4EV71	SYQ_PROMH	6, ., 1, ., 1, ., 1, 8	0.4500	0.6057	0.9081	yes	N/A
O62431	SYQ_CAEEL	6, ., 1, ., 1, ., 1, 8	0.5820	0.9146	0.9681	yes	N/A
A7MQT2	SYQ_CROS8	6, ., 1, ., 1, ., 1, 8	0.4509	0.6045	0.9063	yes	N/A
Q2NUP0	SYQ_SODGM	6, ., 1, ., 1, ., 1, 8	0.4383	0.6033	0.9028	yes	N/A
C0PWA7	SYQ_SALPC	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
Q6D7J7	SYQ_ERWCT	6, ., 1, ., 1, ., 1, 8	0.4393	0.6021	0.9076	yes	N/A
A6T6C3	SYQ_KLEP7	6, ., 1, ., 1, ., 1, 8	0.4390	0.6081	0.9117	yes	N/A
A8AJD6	SYQ_CITK8	6, ., 1, ., 1, ., 1, 8	0.4371	0.6081	0.9117	yes	N/A
Q3MHH4	SYQ_BOVIN	6, ., 1, ., 1, ., 1, 8	0.5886	0.9146	0.9819	yes	N/A
Q9KTA6	SYQ_VIBCH	6, ., 1, ., 1, ., 1, 8	0.4406	0.6081	0.9100	yes	N/A
B4TB84	SYQ_SALHS	6, ., 1, ., 1, ., 1, 8	0.4465	0.6081	0.9117	yes	N/A
B8D9J3	SYQ_BUCA5	6, ., 1, ., 1, ., 1, 8	0.4267	0.6045	0.8809	yes	N/A
B7VIH6	SYQ_VIBSL	6, ., 1, ., 1, ., 1, 8	0.4245	0.6129	0.9189	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.18	0.946
3rd Layer	6.1.1	0.963

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	832
PLN02859	788	PLN02859, PLN02859, glutamine-tRNA ligase	0.0
PRK05347	554	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Pr	0.0
TIGR00440	522	TIGR00440, glnS, glutaminyl-tRNA synthetase	0.0
PRK14703	771	PRK14703, PRK14703, glutaminyl-tRNA synthetase/Yqe	1e-178
PTZ00437	574	PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Pr	1e-165
pfam00749	314	pfam00749, tRNA-synt_1c, tRNA synthetases class I	1e-130
COG0008	472	COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synth	1e-100
TIGR00463	556	TIGR00463, gltX_arch, glutamyl-tRNA synthetase, ar	2e-92
cd00807	238	cd00807, GlnRS_core, catalytic core domain of glut	1e-88
PTZ00402	601	PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Prov	1e-83
PRK04156	567	PRK04156, gltX, glutamyl-tRNA synthetase; Provisio	3e-82
PLN02907	722	PLN02907, PLN02907, glutamate-tRNA ligase	1e-74
PLN03233	523	PLN03233, PLN03233, putative glutamate-tRNA ligase	4e-73
cd00807	238	cd00807, GlnRS_core, catalytic core domain of glut	2e-60
pfam04558	164	pfam04558, tRNA_synt_1c_R1, Glutaminyl-tRNA synthe	2e-50
pfam03950	174	pfam03950, tRNA-synt_1c_C, tRNA synthetases class	2e-47
cd00418	230	cd00418, GlxRS_core, catalytic core domain of glut	5e-25
cd09287	240	cd09287, GluRS_non_core, catalytic core domain of	8e-24
cd00418	230	cd00418, GlxRS_core, catalytic core domain of glut	7e-22
cd09287	240	cd09287, GluRS_non_core, catalytic core domain of	6e-21
TIGR00464	470	TIGR00464, gltX_bact, glutamyl-tRNA synthetase, ba	3e-17
PRK12558	445	PRK12558, PRK12558, glutamyl-tRNA synthetase; Prov	2e-16
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	1e-15
cd00808	239	cd00808, GluRS_core, catalytic core domain of disc	9e-12
PRK14895	513	PRK14895, gltX, glutamyl-tRNA synthetase; Provisio	5e-11
PLN02627	535	PLN02627, PLN02627, glutamyl-tRNA synthetase	7e-09
PRK01406	476	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	1e-08
PRK05710	299	PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetas	2e-07
cd00802	143	cd00802, class_I_aaRS_core, catalytic core domain	3e-06
PRK12410	433	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthe	2e-04

>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase

 Score =  773 bits (1999), Expect = 0.0
 Identities = 348/792 (43%), Positives = 496/792 (62%), Gaps = 39/792 (4%)

Query: 66  ISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQS 125
           +  FL +GL+E+ A+  + N  +++ L   I EA  ++    +  G+LLY +A+K  + +
Sbjct: 9   LELFLKIGLDERTARNAIANNKVTSNLTAVIHEAG-VTNGCDKTVGNLLYTVATKYPANA 67

Query: 126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLS-HVNAVNEKELEASCGVGVIVTSEDIEET 184
            +H P L+ YIVS  + +  +++AA  +  S    + +  + E +CGVGV+V+ EDIE  
Sbjct: 68  LVHRPTLLSYIVSSKIKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAA 127

Query: 185 VSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADL 244
           V++V E++K ++L++RYR N+G ++ +VR  L WAD K +K  +D ++  LLG KT AD 
Sbjct: 128 VNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYELLGEKTAADN 187

Query: 245 APVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFK-------SD 297
              P  K  EK +K +  +         EE +N         F +P ENFK       SD
Sbjct: 188 EK-PVKKKKEKPAKVEEKKVAVAAAPPSEEELN-----PYSIFPQPEENFKVHTEVFFSD 241

Query: 298 GYVV-TEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFL 356
           G V+    T ++L +H+K TGGKV TRFPPEPNG LHIGHAKA+ ++FG A    G C+L
Sbjct: 242 GSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYL 301

Query: 357 RYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ 416
           R+DDTNPE E++++   I+++V+W+G++P++IT++SDYF +LYE AV+LI++G AYV HQ
Sbjct: 302 RFDDTNPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQ 361

Query: 417 KSDEMKGF--NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDP 471
             +E+K +    + SPWR+RP+EE++KLFE M+ GLI+EG+ATLRMK  ++       D 
Sbjct: 362 TPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDL 421

Query: 472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD 531
           +AYRIKF PH   GD WCIYP+YDY HC+ DS+E+ITHSLCT EF++RR+SYYWL ++L 
Sbjct: 422 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG 481

Query: 532 IYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKF 591
           +Y P  WEY RLNV  TV+SKRK+ +L+ E  V+ WDDPRL TL  LRRRG  P AIN F
Sbjct: 482 LYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAF 541

Query: 592 CARMGVTGAQ-AVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFD---QLNVDTKF 647
           C  +G+T +  +++  + LE  +RE LN TAPR MVV+ PL + I N +    + +D K 
Sbjct: 542 CRGIGITRSDNSLIRMDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAK- 600

Query: 648 TVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV 707
             PD  ND     + + F R +YIE+SDF++   K Y  LAPG+ V LRYA  +   D V
Sbjct: 601 RWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSKDYYGLAPGKSVLLRYAFPIKCTDVV 660

Query: 708 NTKCNGAITSIDVKATPVDVDNKPKAFIHWVA------RPISIEVRLYSTLFLHKNPEDT 761
               N  +  I  +  P +   KPK  +HWVA       P+ +EVRL+  LFL +NP + 
Sbjct: 661 LADDNETVVEIRAEYDP-EKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENPAEL 719

Query: 762 YQVPEGYLSDINPDS-LKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVN 820
               E +L D+NP S   +S  YA       K  DRFQFER+G+F VD+DS    K V N
Sbjct: 720 ----EDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDS-TPEKLVFN 774

Query: 821 LTVSLKEDSGKS 832
            TV+LK+  GK 
Sbjct: 775 RTVTLKDSYGKG 786

Length = 788

>gnl|CDD|235424 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional

 Score =  661 bits (1708), Expect = 0.0
 Identities = 248/536 (46%), Positives = 332/536 (61%), Gaps = 32/536 (5%)

Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
            +V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNPEKE++++   IK+ 
Sbjct: 28  TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKED 87

Query: 378 VQWLGYKP-YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK---------GFNPL 427
           V+WLG+    ++ ++SDYF QLYE+AV+LIKKG AYV    ++E++         G N  
Sbjct: 88  VRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKN-- 145

Query: 428 PSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRT 484
            SP+R+R VEEN+ LFE M+ G   EG A LR KI +       +DPV YRI+   HHRT
Sbjct: 146 -SPYRDRSVEENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRT 204

Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRL 543
           GD WCIYP YD+ HC+ D+IE ITHSLCT EF+  R  Y W+ + L I   P Q+E+ RL
Sbjct: 205 GDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL 264

Query: 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV 603
           N+ YTV+SKRK+ +L+EE  V+ WDDPR+ T++ LRRRG+ PE+I +FC R+GVT   +V
Sbjct: 265 NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSV 324

Query: 604 VSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDI 663
           +  +MLE+ +RE LN+ APR M V+DPL L I N+ +  V+     P+ P D   G+ ++
Sbjct: 325 IDMSMLESCIREDLNENAPRAMAVLDPLKLVITNYPEGQVEE-LEAPNHPEDPEMGTREV 383

Query: 664 QFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI----- 718
            F R +YIE+ DF     K Y RL PG+ V LR A  V++ ++V    +G IT I     
Sbjct: 384 PFSRELYIEREDFMEEPPKKYFRLVPGKEVRLRNAY-VIKCEEVVKDADGNITEIHCTYD 442

Query: 719 -DVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
            D  +       K K  IHWV  A  +  EVRLY  LF   NP       + +L  +NPD
Sbjct: 443 PDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNPAAG----KDFLDFLNPD 498

Query: 776 SLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
           SL +  G+ +      KP DRFQFER G+F  D+DS    K V N TV L++   K
Sbjct: 499 SLVIKQGFVEPSLADAKPEDRFQFEREGYFCADKDSTPG-KLVFNRTVGLRDSWAK 553

Length = 554

>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase

 Score =  537 bits (1385), Expect = 0.0
 Identities = 238/531 (44%), Positives = 324/531 (61%), Gaps = 34/531 (6%)

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFGYA  +NG C LR+DDTNP KE+ ++   IK  V+
Sbjct: 1   VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60

Query: 380 WLGYKP-YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK---------GFNPLPS 429
           WLG+K   +I +SSDYF +LY +A +LIKKGLAYV     +E++         G N   S
Sbjct: 61  WLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKN---S 117

Query: 430 PWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGD 486
           P+R+R +EEN+ LFE M++G   EG+A LR KI +       +DPVAYRIKF PHH+TG 
Sbjct: 118 PYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGT 177

Query: 487 SWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNV 545
            WCIYP YD+THC+ D++E+ITHSLCT EFQ  R  Y W+ + + I+  P Q+E+ RLN+
Sbjct: 178 KWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNL 237

Query: 546 NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVS 605
             TV+SKRK+A+L+++  V  WDDPR+ T++ LRRRG+ P +I +FC R+GVT     + 
Sbjct: 238 EGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIE 297

Query: 606 PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNF-DQLNVDTKFTVPDFPNDATKGSHDIQ 664
              LE+ +RE LN+ APR M VIDP+ + I N  D+  +    T+P+ PN    G   + 
Sbjct: 298 VVRLESCIREDLNENAPRAMAVIDPVEVVIENLSDEYEL---ATIPNHPNTPEFGERQVP 354

Query: 665 FDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATP 724
           F    YI+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I      
Sbjct: 355 FTNEFYIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAAGKITTIFCTYDN 413

Query: 725 VDVDN------KPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS 776
             +        K K  IHWV  +     E RLY  LF   NP      P+ +LS INP+S
Sbjct: 414 KTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNP----GAPDDFLSVINPES 469

Query: 777 LKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
           L +  G+ +          RFQFER G+F +D   +   K V N TVSLK+
Sbjct: 470 LVIKQGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVVFNRTVSLKD 520

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases [Protein synthesis, tRNA aminoacylation]. Length = 522

>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

 Score =  531 bits (1371), Expect = e-178
 Identities = 226/541 (41%), Positives = 312/541 (57%), Gaps = 27/541 (4%)

Query: 311 EHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKF 370
           E  +Y   +V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR DDTNPE E+ ++
Sbjct: 25  EAGRY--PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEY 82

Query: 371 FTGIKDMVQWLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF----- 424
              IKD V+WLG+     + ++SDYF ++Y +A +LIK GLAYV     +E++       
Sbjct: 83  VEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVT 142

Query: 425 NP-LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLP 480
            P  PSP+R+R VEEN+ LF  M+ G   +G   LR KI +       +DP+ YRI+   
Sbjct: 143 EPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAH 202

Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC--PVQW 538
           H+RTGD WCIYP YD+ H L D+IE +THS+CT EF++ R+ Y W+ + L  +   P Q+
Sbjct: 203 HYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQY 262

Query: 539 EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVT 598
           E+ RL + YTV+SKRK+ +L+EE  V+ WDDPR+ T+   RRRG  PEAI  F  ++GV 
Sbjct: 263 EFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVA 322

Query: 599 GAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATK 658
              + V   +LE  +R+ LN  APRVM V+DPL + I N     V+    +P +P+D  K
Sbjct: 323 KTNSTVDIGVLEFAIRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEE-LDLPYWPHDVPK 381

Query: 659 -GSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITS 717
            GS  + F R +YIE+ DF     KG++RL PG+ V LR A  ++  D+V    +GA+T 
Sbjct: 382 EGSRKVPFTRELYIERDDFSEDPPKGFKRLTPGREVRLRGAY-IIRCDEVVRDADGAVTE 440

Query: 718 I-----DVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLS 770
           +        A   D   K    IHWV     +  EVRLY  LF    PE      E +L 
Sbjct: 441 LRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQPE---AADEDFLE 497

Query: 771 DINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSG 830
            +NPDSL+V+ G  +          R+QFER G+F  D   +     V N  ++LK+  G
Sbjct: 498 FLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPDALVFNRIITLKDTWG 557

Query: 831 K 831
            
Sbjct: 558 A 558

Length = 771

>gnl|CDD|240418 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional

 Score =  491 bits (1266), Expect = e-165
 Identities = 243/545 (44%), Positives = 336/545 (61%), Gaps = 35/545 (6%)

Query: 305 THDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE 364
           T +LL +H   TGGK   RFPPEPNG LHIGHAK++N+NFG A AH G C+LRYDDTNPE
Sbjct: 37  TPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPE 96

Query: 365 KEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF 424
            EE+ +   I +MV+W+G+KP  +T SSDYF QL+E+AV+LIK G AYV H   DE+K  
Sbjct: 97  TEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQ 156

Query: 425 --NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFL 479
                 SPWR R VEEN+ LFE M+ G   EGEATLR+K  ++      +D +AYR+K++
Sbjct: 157 REQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYV 216

Query: 480 PHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE 539
            H    D WCIYP+YD+THCL DS+E I +SLCT EF++RR SY+WL   L+++ P  WE
Sbjct: 217 EHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWE 276

Query: 540 YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599
           + RLNV  +++SKRKI  L+ + IV  +DDPRL TL  +RRRG+ P AIN+FC  +G+T 
Sbjct: 277 FSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITR 336

Query: 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKG 659
           +  V+  +MLE  +RE L++   R ++VIDP+ + + N+     + +F  P+ P     G
Sbjct: 337 SMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKG---EREFECPNHPRKPELG 393

Query: 660 SHDIQFDRTIYIEKSDFKV-IQEKGYRRLAPG-QGVGLRYAGLVLEVDKVNTKCNGAITS 717
           S  + F  T Y+++SDF+       +  LAPG + VGL+Y+G        N  C G    
Sbjct: 394 SRKVMFTDTFYVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSG--------NVVCKG--FE 443

Query: 718 IDVKATP----VDVD----NKPKAFIHWVARP--ISIEVRLYSTLFLHKNPEDTYQVPEG 767
           +D    P    VD+D    +KPK  I WV+      +EVRLY+ L      +D   +   
Sbjct: 444 VDAAGQPSVIHVDIDFERKDKPKTNISWVSATACTPVEVRLYNALL----KDDRAAIDPE 499

Query: 768 YLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
           +L  I+ DS  VS GYA+ G    K ++  Q ER G+F VD D+  +H  V+N  + L+E
Sbjct: 500 FLKFIDEDSEVVSHGYAEKGIENAKHFESVQAERFGYFVVDPDTRPDHL-VMNRVLGLRE 558

Query: 828 DSGKS 832
           D  K+
Sbjct: 559 DKEKA 563

Length = 574

>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q), catalytic domain

 Score =  391 bits (1007), Expect = e-130
 Identities = 124/314 (39%), Positives = 171/314 (54%), Gaps = 13/314 (4%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           KVRTRF P P G LHIGHA+    N+ +A  +NG   LR+DDT+PE+E+ ++   I + +
Sbjct: 1   KVRTRFAPSPTGYLHIGHARTALFNYLFAKNYNGKFILRFDDTDPEREKPEYEESILEDL 60

Query: 379 QWLGYKPY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP----LPSPWRE 433
           +WLG K   +  + SD F   Y++A +LI+KGLAYVC    +E++        L SP R 
Sbjct: 61  KWLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERP 120

Query: 434 RPVEENVKLFEAM-KNGLIDEGEATLRMKITLEEGKQ--DPVAYRIKFLP---HHRTGDS 487
           R  EE ++LFE   + G  + G+ATLR KI +E      D V  RIKF P   H RTG  
Sbjct: 121 RYDEECLRLFEEEMRKGEAEGGKATLRFKIPMESPYVMRDLVRGRIKFEPSALHDRTGLK 180

Query: 488 WCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPV-QWEYGRLNVN 546
           W  YPTYD+   + D+I  ITH L  +E         W+  AL    P    EY RLN++
Sbjct: 181 WDGYPTYDFAVVIDDAIMGITHVLRGEEHLDNTPKQIWIYQALGWEVPPFIHEYLRLNLD 240

Query: 547 YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV-VS 605
            T +SKRK++  +  + V  W DP    L  LRRRG+ PE I +F  R  +  +  +   
Sbjct: 241 GTKLSKRKLSLSVFISQVKGWGDPPEALLNFLRRRGWTPEGIREFFTREELIKSFDLNRV 300

Query: 606 PNMLEAVVREVLND 619
              LEA  R+ L+ 
Sbjct: 301 SKSLEAFDRKKLDW 314

Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Length = 314

>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

 Score =  318 bits (817), Expect = e-100
 Identities = 150/508 (29%), Positives = 209/508 (41%), Gaps = 62/508 (12%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
            VRTRF P P G LHIGHA+   +N+ YA  + G   LR +DT+PE+E  +    I + +
Sbjct: 9   GVRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDL 68

Query: 379 QWLGYKPYQ-ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDE--------MKGFNPLPS 429
           +WLG    +   + S+ F   YE+A KLI+KG AYVC+   +E             P PS
Sbjct: 69  EWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPS 128

Query: 430 PWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ---DPVAYRIKFLP-HHR-T 484
             R+   E N+ LFE M + L + G A +R+KI +        D V  RI F P H    
Sbjct: 129 YDRD---ERNLTLFEKMAD-LGEGGPAVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFV 184

Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN 544
              +  YPTY++   + D +  ITH L  ++         WL  AL    PV      L 
Sbjct: 185 ILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLL 244

Query: 545 VNYTVV-SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV 603
                  SKRK A  I E  V  W  P L  L AL  RG+PPEAI  F    G+      
Sbjct: 245 NEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLT 304

Query: 604 VSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDI 663
           +      A  R+ L+   PR M V DP+ + I N      +   T+P  P    +     
Sbjct: 305 IVSKSPAAFDRKKLDWLNPRYMRV-DPVEVVIENLKPHLEEEGATLPLNPEMGERVVPLT 363

Query: 664 QFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKAT 723
           + +  I IE+ DF              + V L+    V+  + +     G ITS      
Sbjct: 364 K-ETLIEIERLDF--------FFFEDKEEVRLKRLANVIVAEVLEKDAEGLITS------ 408

Query: 724 PVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS-LKVSIG 782
               D   +  IHWV           + LF  K P             + P   + ++ G
Sbjct: 409 ----DWTKENIIHWVKA--------VARLFGVKGP------------KLFPPLRVALTGG 444

Query: 783 YADSGFVGVKPYDR--FQFERVGFFTVD 808
           Y +              QFER+G+   D
Sbjct: 445 YVEPELADTIELLGKEVQFERLGYALAD 472

Length = 472

>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and eukaryotic family

 Score =  300 bits (771), Expect = 2e-92
 Identities = 156/573 (27%), Positives = 248/573 (43%), Gaps = 76/573 (13%)

Query: 248 PKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHD 307
           P+++   K+         E       E     +LMK+L      +  K  G         
Sbjct: 34  PELRKKAKEVLEAVEAAVEEVNSLSPEE--QKELMKRLGLDIKKKEKKRKG--------- 82

Query: 308 LLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEE 367
            LRE      G+V  RF P P+G LHIGHA+A  +N  YA  ++G   +R+DDT+P + +
Sbjct: 83  -LRELPGAKMGEVVMRFAPNPSGPLHIGHARAAILNHEYAKKYDGKLIIRFDDTDPRRVD 141

Query: 368 EKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF--N 425
            + +  I + ++WLG K  ++ + SD     Y++  KLI+ G AYVC  + +E +     
Sbjct: 142 PEAYDMILEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCRPEEFRELRNR 201

Query: 426 PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHH 482
                 R+R VEEN++ +E M  G  + G   +R+K  L+      +D V +RI   PH 
Sbjct: 202 GEACHCRDRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHP 261

Query: 483 RTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEF--QSRRSSYYWLCNALDIYCPVQWEY 540
           RTGD + +YPT D++  + D +  +TH L  K+     R+  Y +     +   P    +
Sbjct: 262 RTGDKYRVYPTMDFSVAIDDHLLGVTHVLRGKDHIDNRRKQEYIYRYFGWEP--PEFIHW 319

Query: 541 GRLNVN-YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG 599
           GRL ++    +S     K I     + WDDPRL TL A+RRRG  PEAI KF   +GV  
Sbjct: 320 GRLKIDDVRALSTSSARKGILRGEYSGWDDPRLPTLRAIRRRGIRPEAIRKFMLSIGVKI 379

Query: 600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKG 659
               +S   + A+ R+++++ A R   + +P+ + IV   +     +   PD P     G
Sbjct: 380 NDVTMSWKNIYALNRKIIDEEARRYFFIWNPVKIEIVGLPEPKRVERPLHPDHPE---IG 436

Query: 660 SHDIQFDRTIYIEKSDFKVIQEKGYRRLAPG----QGVGLRYAGLVLEVDKVNTKCNGAI 715
              +     IY+ K D +   E   R +           LRY    LE  +         
Sbjct: 437 ERVLILRGEIYVPKDDLEEGVEP-VRLMDAVNVIYSKKELRYHSEGLEGARKLG------ 489

Query: 716 TSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPD 775
                           K+ IHW+    +++V++                       I PD
Sbjct: 490 ----------------KSIIHWLPAKDAVKVKV-----------------------IMPD 510

Query: 776 SLKVSIGYADSGFVGVKPYDRFQFERVGFFTVD 808
           +  V  G  ++    ++  D  QFER GF  +D
Sbjct: 511 ASIVE-GVIEADASELEVGDVVQFERFGFARLD 542

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases, including all known archaeal enzymes (as of 2010) may act on both tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA aminoacylation]. Length = 556

>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase

 Score =  279 bits (717), Expect = 1e-88
 Identities = 89/143 (62%), Positives = 108/143 (75%)

Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY 540
           HHRTGD WCIYPTYD+ H + DSIE ITHSLCT EF+ RR SYYWLC+AL +Y P QWE+
Sbjct: 96  HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEF 155

Query: 541 GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600
            RLN+ YTV+SKRK+ +L++E  V+ WDDPRL TL  LRRRG  PEAI +F  R GV+ A
Sbjct: 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKA 215

Query: 601 QAVVSPNMLEAVVREVLNDTAPR 623
            + +  + LEA VR+ LN TAPR
Sbjct: 216 DSTIDWDKLEACVRKDLNPTAPR 238

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238

>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional

 Score =  279 bits (714), Expect = 1e-83
 Identities = 168/504 (33%), Positives = 253/504 (50%), Gaps = 26/504 (5%)

Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
           GKV TRFPPE +G LHIGHAKA  IN   A  + G    R+DDTNP KE+E F   I D 
Sbjct: 51  GKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDD 110

Query: 378 VQWLGYKPYQI--THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG--FNPLPSPWRE 433
           +  LG   + +  T+SSDY   +YE A +LIKKGLAY      +EM+   F+ +P+ +R+
Sbjct: 111 LATLGV-SWDVGPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRD 169

Query: 434 RPVEENVKLFEAMKNGLIDEGEATLRMKITLE---EGKQDPVAYRIKFLPHHRTGDSWCI 490
             VEE  +L+  MK G  +  E  LR KI+++   +  +DPV YR+   PH R G  +  
Sbjct: 170 ISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKYKA 229

Query: 491 YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV 550
           YPTYD+   + DS+E +TH+L T E+  R   YYW C+AL I  P+  ++ RLN+ Y+V+
Sbjct: 230 YPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSVM 289

Query: 551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE 610
           SKRK+ +L++ ++V+ WDDPR  T+ AL RRG   EA+ +F    G++     +  + L 
Sbjct: 290 SKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLW 349

Query: 611 AVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIY 670
               ++L+ + PR  VV + L +      Q++++              G         I+
Sbjct: 350 YFNTQILDPSVPRYTVVSNTLKVRCTVEGQIHLE-ACEKLLHKKVPDMGEKTYYKSDVIF 408

Query: 671 IEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNK 730
           ++  D  +++E        G  V L   G     +   +  +  IT  D+         K
Sbjct: 409 LDAEDVALLKE--------GDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKK 460

Query: 731 PKAFIHWVA---RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDI-NPDSLKVSIGYADS 786
            K  + WV    +   +E+  Y  L   K P+     PE  + DI  P +      Y + 
Sbjct: 461 TKFKLTWVPESPKAEVMELNEYDHLLTKKKPD-----PEESIDDIIAPVTKYTQEVYGEE 515

Query: 787 GFVGVKPYDRFQFERVGFFTVDRD 810
               +K  D  Q ER G++ VD  
Sbjct: 516 ALSVLKKGDIIQLERRGYYIVDDV 539

Length = 601

>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional

 Score =  274 bits (702), Expect = 3e-82
 Identities = 158/516 (30%), Positives = 229/516 (44%), Gaps = 85/516 (16%)

Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE--KEEEKFFTGIK 375
           GKV  RF P P+G LH+GHA+A  +N  YA  + G   LR++DT+P   + + + +  I 
Sbjct: 100 GKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMIL 159

Query: 376 DMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF--NPLPSPWRE 433
           + ++WLG K  ++   SD     YE+A KLI+ G AYVC    +E K       P P R+
Sbjct: 160 EDLKWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRD 219

Query: 434 RPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP-----VAYRIKFLPHHRTGDSW 488
           +  EEN++L+E M +G   EGEA +R+K  LE    +P     VA+RI   PH R GD +
Sbjct: 220 KSPEENLELWEKMLDGEYKEGEAVVRVKTDLEH--PNPSVRDWVAFRIVKTPHPRVGDKY 277

Query: 489 CIYPTYDYTHCLCDSIEHITHSLCTKEFQS--RRSSYYWLCNALDIYCPVQWEY------ 540
            ++PTY++   + D +  +TH L  K+      +  Y        IY    WEY      
Sbjct: 278 RVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY--------IYDYFGWEYPETIHY 329

Query: 541 GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600
           GRL +   V+S  KI K IEE   + WDDPRL TL ALRRRG  PEAI +    +GV   
Sbjct: 330 GRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKET 389

Query: 601 QAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGS 660
            A +S   L A+ R++++  A R   V DP+ L I   +      +  +P  P+   +G 
Sbjct: 390 DATISWENLYAINRKLIDPIANRYFFVRDPVELEIEGAE----PLEAKIPLHPDRPERGE 445

Query: 661 HDIQFDRTIYIEKSDFKVIQE----KGY---RRLAPGQGVGLRYAGLVLEVDKVNTKCNG 713
            +I     +Y+   D +   +                     RY    LE  +       
Sbjct: 446 REIPVGGKVYVSSDDLEAEGKMVRLMDLFNVEITGVS-VDKARYHSDDLEEAR------- 497

Query: 714 AITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDIN 773
                          NK    I WV    S+ VR+                       + 
Sbjct: 498 --------------KNKAP-IIQWVPEDESVPVRV-----------------------LK 519

Query: 774 PDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR 809
           PD   +  G A+     ++  D  QFER GF  +D 
Sbjct: 520 PDGGDIE-GLAEPDVADLEVDDIVQFERFGFVRIDS 554

Length = 567

>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase

 Score =  257 bits (659), Expect = 1e-74
 Identities = 157/522 (30%), Positives = 253/522 (48%), Gaps = 45/522 (8%)

Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
           GKV TRFPPEP+G LHIGHAKA  +N  +A  + G   +R+DDTNP KE ++F   I   
Sbjct: 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKD 271

Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG--FNPLPSPWRERP 435
           ++ LG K   +T++SDYF QL E A KLIK+G AYV     ++M+    + + S  R   
Sbjct: 272 IETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNS 331

Query: 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYP 492
           VEEN++L++ M  G     +  +R K+ +++     +DPV YR    PHHR G  + +YP
Sbjct: 332 VEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYP 391

Query: 493 TYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQ-WEYGRLNVNYTVVS 551
           TYD+     D++E +TH+L + E+  R + YY +   + +   V  WE+ RLN  YT++S
Sbjct: 392 TYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLR-KVHIWEFSRLNFVYTLLS 450

Query: 552 KRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA 611
           KRK+   ++   V  WDDPR  T+  + RRG   EA+ +F    G +    ++  + L  
Sbjct: 451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWT 510

Query: 612 VVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTK---FTVPDFPNDATKGSHDIQFDRT 668
           + +++++   PR   V+       V     +         +P        G     F   
Sbjct: 511 INKKIIDPVCPRHTAVLKE---GRVLLTLTDGPETPFVRIIPRHKKYEGAGKKATTFTNR 567

Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI--------DV 720
           I+++ +D + I E        G+ V L   G  + + ++     GA+T++         V
Sbjct: 568 IWLDYADAEAISE--------GEEVTLMDWGNAI-IKEITKDEGGAVTALSGELHLEGSV 618

Query: 721 KATPVDVDNKPKAFIHWVAR-PISIEVRL--YSTLFLHKNPEDTYQVPEGYLSDINPDSL 777
           K T        K  + W+      + + L  +  L   K  E+     + +L  +NP + 
Sbjct: 619 KTT--------KLKLTWLPDTNELVPLSLVEFDYLITKKKLEED----DNFLDVLNPCTK 666

Query: 778 KVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVV 819
           K +    DS    +K  +  Q ER G++  D     + KP+V
Sbjct: 667 KETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIV 708

Length = 722

>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional

 Score =  248 bits (634), Expect = 4e-73
 Identities = 165/516 (31%), Positives = 259/516 (50%), Gaps = 30/516 (5%)

Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
           G++ TRFPPEP+G LHIGHAKA  +N  YA  + G   LR+DDTNP KE+ +F   I + 
Sbjct: 10  GQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIED 69

Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG--FNPLPSPWRERP 435
           +  +  KP  ++ +SDYF  +  +A+ LI++GLAY+     +EMK    +   S  R + 
Sbjct: 70  LGKIEIKPDSVSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQS 129

Query: 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYP 492
            EE +++F+ M +G  + G   LR KI ++      +DPV +R    PHHR+G ++  YP
Sbjct: 130 PEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYP 189

Query: 493 TYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSK 552
           TYD    + DSIE +TH+L T E+  R + ++W+  AL +  P    + R+N   TV+SK
Sbjct: 190 TYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVLSK 249

Query: 553 RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV 612
           RK+   ++   V  WDD R  T+  + RRG   +A+  F    G +     +      A 
Sbjct: 250 RKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAE 309

Query: 613 VREVLNDTAPRVMVV--IDPLPLHIVNFDQLNVDTKFTVPDF-PNDATKGSHDIQFDRTI 669
            ++ ++  A R M +   D   L + N D+   D  F+  D  P D   G   ++    +
Sbjct: 310 NKKEIDKRAKRFMAIDKADHTALTVTNADE-EADFAFSETDCHPKDPGFGKRAMRICDEV 368

Query: 670 YIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGA-ITSIDVKATPVDVD 728
            +EK+D + IQ         G+ + L   G V+E+ K++    G  I   D KA      
Sbjct: 369 LLEKADTEDIQ--------LGEDIVLLRWG-VIEISKIDGDLEGHFIPDGDFKAA----- 414

Query: 729 NKPKAFIHWVAR-PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSG 787
              K  I W+A    +I V L    F +   ++  +  + +   INPD+L  +    D+G
Sbjct: 415 ---KKKISWIADVSDNIPVVLSE--FDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAG 469

Query: 788 FVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTV 823
              +K +D  Q ER GF+ VDR      KP++   +
Sbjct: 470 LKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMI 505

Length = 523

>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase

 Score =  204 bits (521), Expect = 2e-60
 Identities = 68/104 (65%), Positives = 83/104 (79%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           KV TRFPPEPNG LHIGHAKAI +NFGYA  + G C LR+DDTNPEKEEE++   IK+ V
Sbjct: 1   KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDV 60

Query: 379 QWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK 422
           +WLG KPY++T++SDYF QLYE+A +LIKKG AYV H+  D+  
Sbjct: 61  KWLGIKPYKVTYASDYFDQLYEYAEQLIKKGKAYVHHRTGDKWC 104

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 238

>gnl|CDD|218149 pfam04558, tRNA_synt_1c_R1, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1

 Score =  174 bits (443), Expect = 2e-50
 Identities = 74/163 (45%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 62  ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKI 121
            + ++  F  +GL+EKKAKETLKN+ +S  L   I EA   S    +  G+LLY+LA+K+
Sbjct: 3   VEELLKLFSKIGLDEKKAKETLKNKKVSASLLAIIAEAGATSGCDKKT-GALLYNLATKL 61

Query: 122 KSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSED 180
           K     H PL+V YIV+  L +TL+VDAAL+Y+ ++   A +  E E +CGVGV+VT ED
Sbjct: 62  KGNEVPHRPLIVSYIVNGKLKTTLQVDAALKYLKANGSEAFDVAEFEEACGVGVVVTPED 121

Query: 181 IEETVSKVVEKHKAELLDKRYR-YNLGLVMQEVRTLLKWADGK 222
           +E  V+  +E++K E+L+KRY+ +N+GL++ + R  LKWAD K
Sbjct: 122 VERAVADYIEENKEEILEKRYKLFNVGLLLVKARPELKWADPK 164

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 164

>gnl|CDD|217810 pfam03950, tRNA-synt_1c_C, tRNA synthetases class I (E and Q), anti-codon binding domain

 Score =  165 bits (421), Expect = 2e-47
 Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 24/193 (12%)

Query: 621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQ 680
           APR M V+DP+ + I N+ +   +    VP+ P +   G+  + F R IYIE+ DFK   
Sbjct: 1   APRYMAVLDPVKVVIENYPEGEEEE-AEVPNHPKNPELGTRKVPFSREIYIEREDFK--- 56

Query: 681 EKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATP--VDVDNKPKAFIHWV 738
                RL PG+ V L  A   ++V +V    +G +T +        +    K K  IHWV
Sbjct: 57  -----RLKPGEEVRLMGAY-NIKVTEVVKDEDGNVTELHCTYDGDSLGGARKVKGIIHWV 110

Query: 739 A--RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSI-GYADSGFVGVKPYD 795
           +    +  EVRLY  LF  ++  D           +NPDSLKV   G A+     +K  D
Sbjct: 111 SADDAVPAEVRLYDRLFKDEDDFDFL---------LNPDSLKVITEGLAEPALANLKVGD 161

Query: 796 RFQFERVGFFTVD 808
             QFER+G+F VD
Sbjct: 162 IVQFERIGYFRVD 174

Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). Length = 174

>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

 Score =  104 bits (260), Expect = 5e-25
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
            V TRF P P G LHIGHA+    NF +A  + G   LR +DT+PE+   ++   I + +
Sbjct: 1   TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDL 60

Query: 379 QWLGYK----PYQITHSSDYFHQLYEWAVKLIKKG 409
           +WLG      PY     SD F     +A +LIKKG
Sbjct: 61  KWLGLDWDEGPY---RQSDRFDLYRAYAEELIKKG 92

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains. Length = 230

>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase

 Score =  100 bits (252), Expect = 8e-24
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQS--RRSSYYWLCNALDIYCPVQW 538
           H RTG  + ++PT ++   + D +  +TH L  K+      +  Y +     +   P   
Sbjct: 98  HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEY--PETI 155

Query: 539 EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVT 598
            +GRL +    +S  KI K IE      WDDPRL TL ALRRRG  PEAI  F   +GV 
Sbjct: 156 HWGRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVK 215

Query: 599 GAQAVVSPNMLEAVVREVLNDTAPR 623
              A +S   L A+ R++++  A R
Sbjct: 216 QTDATISWENLYAINRKLIDPRANR 240

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 240

>gnl|CDD|185672 cd00418, GlxRS_core, catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

 Score = 94.8 bits (236), Expect = 7e-22
 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 18/154 (11%)

Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY-T 548
            YP Y++ H + D++  ITH L  ++         WL  AL    P  + + RL +   T
Sbjct: 93  GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGT 152

Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
            +SKRK+                  TL ALRRRG+ PEA+  + A +G +         +
Sbjct: 153 KLSKRKLNT----------------TLRALRRRGYLPEALRNYLALIGWSKPDGHELFTL 196

Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLN 642
            E +    +           D   L  +N + + 
Sbjct: 197 EEMIAAFSVERVNSA-DATFDWAKLEWLNREYIR 229

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains. Length = 230

>gnl|CDD|185682 cd09287, GluRS_non_core, catalytic core domain of non-discriminating glutamyl-tRNA synthetase

 Score = 92.4 bits (230), Expect = 6e-21
 Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE--KEEEKFFTGIKD 376
           KV  RF P PNG LH+GHA+A  +N  YA  + G   LR+DDT+P   + + + +  I +
Sbjct: 1   KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPE 60

Query: 377 MVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYV 413
            ++WLG K  ++  +SD     YE+A KLI+ G AYV
Sbjct: 61  DLEWLGVKWDEVVIASDRIELYYEYARKLIEMGGAYV 97

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. Length = 240

>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family

 Score = 85.1 bits (211), Expect = 3e-17
 Identities = 75/308 (24%), Positives = 120/308 (38%), Gaps = 66/308 (21%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           KVRTRF P P G LHIG A+    N+ +A    G   LR +DT+ E+  E+    I + +
Sbjct: 1   KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFLLRIEDTDLERNIEEAEEAILEGL 60

Query: 379 QWLG----YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRER 434
           +WLG      PY  +   D + +  +   +L+++GLAY C+   + ++         R R
Sbjct: 61  KWLGISWDEGPYYQSQRLDIYKKYAK---ELLEEGLAYRCYCSKERLE---------RLR 108

Query: 435 PVEENVKLF------------EAMKNGLIDEGEATLRMKITLEE--GKQDPVAYRIKFLP 480
             ++  K              E ++N L       +R KI  E      D V   I F  
Sbjct: 109 EEQKANKETPRYDRHCRNLHNEEIENALAKGIPPVVRFKIPQEGVVSFNDQVRGEITFQN 168

Query: 481 HH-------RTGDSWCIYPTYDYTHCLCDSIEH-ITHSLCTKEFQSRRSSYYWLCNALDI 532
                    ++  S    PTY++   + D     ITH +  ++  S       +  AL  
Sbjct: 169 SELDDFVILKSDGS----PTYNFA-VVVDDYLMKITHVIRGEDHISNTPKQILIYKALGW 223

Query: 533 YCPVQWEYGRLNVNYTVV----SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAI 588
             PV   +  L +         SKR  A  I +                 + +G+ PEA+
Sbjct: 224 KIPV---FAHLPMILGEDGKKLSKRDGATSIMQ----------------FKEQGYLPEAL 264

Query: 589 NKFCARMG 596
             + A +G
Sbjct: 265 INYLALLG 272

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences [Protein synthesis, tRNA aminoacylation]. Length = 470

>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional

 Score = 82.2 bits (204), Expect = 2e-16
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
            V TRF P P G LH+G+A+   +N+ YA  H G   LR DDT+ E+ ++++   I + +
Sbjct: 2   TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDL 61

Query: 379 QWLGYKPYQITHSSDYFHQLYEWAV-KLIKKGLAYVCHQKSDE 420
           +WLG    +    SD F   Y+ A  KL   G  Y C++  +E
Sbjct: 62  KWLGINWDRTFRQSDRF-DRYDEAAEKLKAAGRLYPCYETPEE 103

Length = 445

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 23/97 (23%)

Query: 224 IKSEVDVQVLNLLGPKTEADLAPVPKVK--------VNEKKSKPKSNETQENGFEFVEEN 275
            K EVD+Q+L LLGPKTEADL    K K            K+K  + E    G  F+E  
Sbjct: 2   FKPEVDMQILELLGPKTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG- 60

Query: 276 VNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREH 312
                 + +  FHKPGEN+         QT+ LL++H
Sbjct: 61  -----FLGE-KFHKPGENY--------PQTYPLLKKH 83

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|173905 cd00808, GluRS_core, catalytic core domain of discriminating glutamyl-tRNA synthetase

 Score = 65.7 bits (161), Expect = 9e-12
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           KVRTRF P P G LHIG A+    N+ +A  H G   LR +DT+ E+   +    I + +
Sbjct: 1   KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEAL 60

Query: 379 QWLG------------YKPYQITHSSDYFHQLYEWAVKLIKKG 409
           +WLG            Y PY+    S+      ++A KL++KG
Sbjct: 61  KWLGLDWDEGPDVGGPYGPYR---QSERLEIYRKYAEKLLEKG 100

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 239

>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional

 Score = 65.9 bits (160), Expect = 5e-11
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRF P P G LHIG A+    N+ +A  HNG   LR +DT+ E+  ++    I   ++
Sbjct: 5   VITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLK 64

Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK 422
           WLG     ++   S   +   E A+KL++ G AY C  + +E++
Sbjct: 65  WLGLDWNGEVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIE 108

Length = 513

>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase

 Score = 59.0 bits (143), Expect = 7e-09
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 24/125 (19%)

Query: 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE---KEEEKFFT 372
            GG VR RF P P G LH+G A+    N+ +A +  G   LR +DT+     KE E+   
Sbjct: 42  KGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEE--A 99

Query: 373 GIKDMVQWLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDE 420
            ++D+ +WLG            Y PY+ +  +  + Q    A KL++ G  Y C    +E
Sbjct: 100 VLRDL-KWLGLDWDEGPDVGGEYGPYRQSERNAIYKQY---AEKLLESGHVYPCFCTDEE 155

Query: 421 ---MK 422
              MK
Sbjct: 156 LEAMK 160

Length = 535

>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed

 Score = 58.2 bits (142), Expect = 1e-08
 Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 39/173 (22%)

Query: 319 KVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
           KVRTRF P P G LHIG A+ A+  N+ +A  H G   LR +DT+ E+  E+    I + 
Sbjct: 4   KVRTRFAPSPTGYLHIGGARTAL-FNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEG 62

Query: 378 VQWLG-----------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM--- 421
           ++WLG           Y PY Q    S+    +Y E+A +L+++G AY C+   +E+   
Sbjct: 63  LKWLGLDWDEGPDGGPYGPYRQ----SERLD-IYKEYAEQLLEEGKAYYCYCTPEELEAM 117

Query: 422 ------KGFNPL-PSPWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKITLEE 466
                  G  P      R+   EE V    A        GE   +R K+  E 
Sbjct: 118 REEQRAAGEPPRYDGRCRDLTKEE-VAARLA-------AGEPPVIRFKVPDEG 162

Length = 476

>gnl|CDD|235573 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 321 RTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQW 380
             RF P P+G LH G   A   ++  A AH G   LR +D +P +E       I   ++W
Sbjct: 7   IGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEW 66

Query: 381 LGYKP-----YQITHSSDYFHQLYEWAV-KLIKKGLAYVCH 415
           LG        YQ        H  Y  A+ +L  +GL Y C 
Sbjct: 67  LGLHWDGPVLYQSQR-----HDAYRAALDRLRAQGLVYPCF 102

Length = 299

>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 13/85 (15%)

Query: 322 TRFPPEPNGILHIGHAKAININFGYAAAHN-----GICFLRYDDTNPEKEEEKFFTGIKD 376
           T     PNG LHIGH + I      A A+        C    DD            G   
Sbjct: 2   TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGG-------LIGDPA 54

Query: 377 MVQWLGYKPYQITHSSDYFHQLYEW 401
             +    K +      +   +  E+
Sbjct: 55  NKKGENAKAFVE-RWIERIKEDVEY 78

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143

>gnl|CDD|237094 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 33/198 (16%)

Query: 323 RFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE-----KEEEKFFTGIKDM 377
           RF P P G +HIG+ +A   N+  A   N    +R +DT+ E     K++E     I ++
Sbjct: 3   RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKE-----ILEI 57

Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH-------QKSDEMKGFNPLPSP 430
           +   G    ++ + S+      + A KL+ +  A+ C         K ++ K       P
Sbjct: 58  LNLFGISWDKLVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEK---KP 114

Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK-QDPVAYRIKFLPHHRTGDSWC 489
           +R     EN++  E +           +R+K         D +   + F P     DS+ 
Sbjct: 115 YRYDGTCENLEDDEVLNC----NKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEI--DSFV 168

Query: 490 IY-----PTYDYTHCLCD 502
           I      PTY++  C  D
Sbjct: 169 ILRADKTPTYNFA-CAVD 185

Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	832
KOG1148|consensus	764		100.0
PLN02859	788	glutamine-tRNA ligase	100.0
PTZ00437	574	glutaminyl-tRNA synthetase; Provisional	100.0
PRK05347	554	glutaminyl-tRNA synthetase; Provisional	100.0
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	100.0
TIGR00440	522	glnS glutaminyl-tRNA synthetase. This protein is a	100.0
PLN03233	523	putative glutamate-tRNA ligase; Provisional	100.0
PTZ00402	601	glutamyl-tRNA synthetase; Provisional	100.0
PLN02907	722	glutamate-tRNA ligase	100.0
KOG1147|consensus	712		100.0
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	100.0
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	100.0
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	100.0
cd00807	238	GlnRS_core catalytic core domain of glutaminyl-tRN	100.0
PRK12410	433	glutamylglutaminyl-tRNA synthetase; Provisional	100.0
PLN02627	535	glutamyl-tRNA synthetase	100.0
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	100.0
cd09287	240	GluRS_non_core catalytic core domain of non-discri	100.0
PRK12558	445	glutamyl-tRNA synthetase; Provisional	100.0
KOG1149|consensus	524		100.0
PRK05710	299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	100.0
TIGR03838	272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	100.0
PRK14895	513	gltX glutamyl-tRNA synthetase; Provisional	100.0
PRK01406	476	gltX glutamyl-tRNA synthetase; Reviewed	100.0
TIGR00464	470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	100.0
cd00418	230	GlxRS_core catalytic core domain of glutamyl-tRNA	100.0
cd00808	239	GluRS_core catalytic core domain of discriminating	100.0
PF04558	164	tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-s	100.0
PF03950	174	tRNA-synt_1c_C: tRNA synthetases class I (E and Q)	100.0
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	99.65
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	99.64
PF01406	300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	99.6
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	99.58
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.57
PF04557	84	tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-s	99.54
PLN02946	557	cysteine-tRNA ligase	99.49
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	99.47
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	99.46
PRK14534	481	cysS cysteinyl-tRNA synthetase; Provisional	99.46
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	99.45
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	99.36
PTZ00399	651	cysteinyl-tRNA-synthetase; Provisional	99.31
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	99.3
cd00802	143	class_I_aaRS_core catalytic core domain of class I	99.3
PRK11893	511	methionyl-tRNA synthetase; Reviewed	99.25
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	99.02
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	98.86
PLN02224	616	methionine-tRNA ligase	98.81
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	98.8
KOG2007|consensus	586		98.79
PRK12267	648	methionyl-tRNA synthetase; Reviewed	98.65
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	98.62
PRK12268	556	methionyl-tRNA synthetase; Reviewed	98.61
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	98.57
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	98.57
cd00674	353	LysRS_core_class_I catalytic core domain of class	98.5
cd00806	280	TrpRS_core catalytic core domain of tryptophanyl-t	98.49
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	98.45
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	98.21
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	98.2
PRK12451	562	arginyl-tRNA synthetase; Reviewed	98.2
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	98.14
PLN02610	801	probable methionyl-tRNA synthetase	98.13
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	98.06
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	98.02
TIGR00233	328	trpS tryptophanyl-tRNA synthetase. This model repr	97.74
PLN02286	576	arginine-tRNA ligase	97.68
PRK12285	368	tryptophanyl-tRNA synthetase; Reviewed	97.56
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	97.55
COG0018	577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	97.51
COG2511	631	GatE Archaeal Glu-tRNAGln amidotransferase subunit	97.37
PRK12556	332	tryptophanyl-tRNA synthetase; Provisional	97.28
TIGR00134	620	gatE_arch glutamyl-tRNA(Gln) amidotransferase, sub	97.26
PRK14703	771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	97.22
PRK08560	329	tyrosyl-tRNA synthetase; Validated	97.19
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	97.04
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	97.03
PRK04028	630	glutamyl-tRNA(Gln) amidotransferase subunit E; Val	97.01
cd00395	273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	96.98
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	96.89
PF01921	360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	96.85
PRK05477	474	gatB aspartyl/glutamyl-tRNA amidotransferase subun	96.83
TIGR00133	478	gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	96.64
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	96.62
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	96.54
PLN02563	963	aminoacyl-tRNA ligase	96.5
PLN02751	544	glutamyl-tRNA(Gln) amidotransferase	96.48
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	96.46
cd00805	269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	96.43
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	96.42
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	96.41
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	96.33
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	96.28
PLN02843	974	isoleucyl-tRNA synthetase	96.28
COG0180	314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	96.27
PLN02943	958	aminoacyl-tRNA ligase	96.24
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	96.03
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	95.92
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	95.89
cd02156	105	nt_trans nucleotidyl transferase superfamily. nt_t	95.82
PF00579	292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	95.78
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	95.77
PLN02381	1066	valyl-tRNA synthetase	95.73
PRK05912	408	tyrosyl-tRNA synthetase; Validated	95.69
PRK13354	410	tyrosyl-tRNA synthetase; Provisional	95.67
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	95.58
PRK00927	333	tryptophanyl-tRNA synthetase; Reviewed	95.58
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	95.57
KOG0436|consensus	578		95.33
COG0064	483	GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B su	95.25
PRK12282	333	tryptophanyl-tRNA synthetase II; Reviewed	95.12
PLN02882	1159	aminoacyl-tRNA ligase	94.86
KOG0435|consensus	876		94.74
PRK12284	431	tryptophanyl-tRNA synthetase; Reviewed	94.62
PF09424	143	YqeY: Yqey-like protein; InterPro: IPR019004 Putat	94.56
PF02637	148	GatB_Yqey: GatB domain; InterPro: IPR018027 The Ga	94.2
KOG0432|consensus	995		93.94
PRK12283	398	tryptophanyl-tRNA synthetase; Reviewed	93.89
PLN02959	1084	aminoacyl-tRNA ligase	93.88
PLN02886	389	aminoacyl-tRNA ligase	93.46
smart00845	147	GatB_Yqey GatB domain. This domain is found in Gat	93.27
PLN02486	383	aminoacyl-tRNA ligase	93.19
PTZ00126	383	tyrosyl-tRNA synthetase; Provisional	92.05
PF00750	354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	91.95
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	91.32
PTZ00348	682	tyrosyl-tRNA synthetase; Provisional	89.65
PF00749	314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	88.07
PHA01735	76	hypothetical protein	87.78
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	86.87
TIGR00234	377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	86.46
COG0008	472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	86.22
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	85.74

>KOG1148|consensus

Probab=100.00  E-value=1.7e-226  Score=1849.00  Aligned_cols=753  Identities=59%  Similarity=0.991  Sum_probs=715.3

Q ss_pred             HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575         62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL  141 (832)
Q Consensus        62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl  141 (832)
                      +++++++|.+|||||+||+||+||++||++|..+|.+|++ +++||+++|+|||+|||++++|..+|+++|++||++|+|
T Consensus         3 ~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~-~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~i   81 (764)
T KOG1148|consen    3 MEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADV-SSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGKI   81 (764)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhccc-ccccccccchhHHHHHhhcCccccccchHHHHHHHhccc
Confidence            7899999999999999999999999999999999999998 788999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCCCCCh
Q psy17575        142 DSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADG  221 (832)
Q Consensus       142 kt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~LkWAd~  221 (832)
                      ||++||+||++|++++  +++..+|+++|||||+||+|||+++|.+||++|++.|+++||+||.| |+|.||+.|||||+
T Consensus        82 kt~~ql~aa~~Y~~~~--~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwAD~  158 (764)
T KOG1148|consen   82 KTELQLDAALEYVKSH--TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWADP  158 (764)
T ss_pred             CchHHHHHHHHHHhcc--ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCCCH
Confidence            9999999999999994  47889999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhhHHHHHHHHHhhcCCCcccccCCCCccccccccCCCC-CcccccCCccccccchhhhhhccccCCCCCCCCCccCCcc
Q psy17575        222 KYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPK-SNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYV  300 (832)
Q Consensus       222 k~vK~~vD~~~l~lLGPKte~d~~kk~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~  300 (832)
                      +.||++||+++++|||||||+|++++.|+++++..+++. .+..+.+.+.++...+.|++++ ..+||+||+|.      
T Consensus       159 ~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~-~~~~hk~gent------  231 (764)
T KOG1148|consen  159 KSVKKEIDKEVLELLGPKTEADLEKKKKKKKAEGEKKKTVSAKKAKNQEAASDKAPQIEELF-LTKFHKPGENT------  231 (764)
T ss_pred             HHHHHHHhhHHHHhcCccchhhcccccccccccccccccccCCCCCchhhhcccccchhhhh-hhhcccCCCCc------
Confidence            999999999999999999999999887665332211111 1111222232345567778754 36999999994      


Q ss_pred             cccccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHH
Q psy17575        301 VTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQW  380 (832)
Q Consensus       301 ~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~W  380 (832)
                        ++|+++|++||++|||+|+|||||+|||+||||||+|+.+||+||+.+||.|+||||||||+++.++|+++|.++++|
T Consensus       232 --~~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~W  309 (764)
T KOG1148|consen  232 --QHTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAW  309 (764)
T ss_pred             --cchHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHH
Confidence              688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCC---CCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        381 LGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP---LPSPWRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       381 LGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~---~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      ||++|++++|+||||+++|++|.+||++|+||+|||+.|||++.++   .+|+||+||+||||.+|++|++|++++|+++
T Consensus       310 LG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF~~Mr~Gk~~eGeAt  389 (764)
T KOG1148|consen  310 LGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLFEDMRDGKYEEGEAT  389 (764)
T ss_pred             hCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHHHHHhcCCcCcChhh
Confidence            9999999999999999999999999999999999999999996543   5799999999999999999999999999999


Q ss_pred             EEEEecccCCC---CCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575        458 LRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC  534 (832)
Q Consensus       458 lR~K~~~~~~~---~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~  534 (832)
                      ||||+++++++   +|+|+|||.+.||||+|++||||||||||||++||+++|||++|+.||..++.+|+|||++|++|+
T Consensus       390 LRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcnaL~iY~  469 (764)
T KOG1148|consen  390 LRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNALEIYC  469 (764)
T ss_pred             eeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhccc
Confidence            99999999876   999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575        535 PVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR  614 (832)
Q Consensus       535 P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r  614 (832)
                      |+||||||||+.||+|||||+.+||.+|+|.||||||++||.+|||||++|+||++||+.+|+|.++.+|++.+||+++|
T Consensus       470 P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a~~~i~v~~lE~~VR  549 (764)
T KOG1148|consen  470 PVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTAQTTIDVARLEAAVR  549 (764)
T ss_pred             chhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCcceeeceecHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeee
Q psy17575        615 EVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVG  694 (832)
Q Consensus       615 ~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~  694 (832)
                      ++||.+|||.|+|++|+||+|+|+++ +.++.+++|++|++|.+|+|+|+|++.||||++||++.++|+|+||+|||+||
T Consensus       550 d~Ln~tapR~M~VleplkVti~N~~~-~~~~~i~iPd~P~dp~~g~~~Vpft~vIYIErSDFkee~dK~f~RLtpgQpVG  628 (764)
T KOG1148|consen  550 DYLNDTAPRLMFVLEPLKVTIENLSD-DYPESIEIPDFPGDPTSGFHKVPFTRVIYIERSDFKEEDDKDFFRLTPGQPVG  628 (764)
T ss_pred             HHHhccCcceEEeecceEEEEecCCc-chhhhccCCCCCCCCccccccccccceEEEEcccccccCCcchhccCCCCcce
Confidence            99999999999999999999999999 88999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCceEEEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEecc-CCceeEEEEcccccCCCCCCCCCCCCCCccccCC
Q psy17575        695 LRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVA-RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDIN  773 (832)
Q Consensus       695 L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~-~~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN  773 (832)
                      |+++|+++++..+++|++|.|+||+++|++.++.+|||++||||| +|+.||||+|++||+++||+|.   ++.||+|||
T Consensus       629 Lr~~~~vi~~~~vvkD~~g~v~ei~v~yd~~s~~~KPK~fIhWVse~Pv~vEvRlye~LFks~NP~d~---~e~fLsDiN  705 (764)
T KOG1148|consen  629 LRYAGYVIRVVKVVKDDEGTVIEIHVEYDPASKKKKPKAFIHWVSESPVKVEVRLYEQLFKSENPADL---NEVFLSDIN  705 (764)
T ss_pred             eEeecceEEEEEEeeCCCCceEEEEEEecccccccCCceeEEeccCCCeEeehhHHHHHhccCCccch---hHHHHHhcC
Confidence            999999999999999999999999999999888899999999999 7899999999999999999876   456999999


Q ss_pred             CCceeEEE-EEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575        774 PDSLKVSI-GYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS  832 (832)
Q Consensus       774 ~~S~~~~~-~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~  832 (832)
                      |+|+.|+. |++|..+...+++|+|||||+||||||+||+++ +|||||||+|||++||.
T Consensus       706 p~S~~V~~~a~~D~~~~~a~v~DrFQfeRiGYF~VDkDSt~~-kLVfNRtV~LKd~~gk~  764 (764)
T KOG1148|consen  706 PDSLVVVKGALADKSISDAKVYDRFQFERIGYFCVDKDSTPG-KLVFNRTVTLKDDSGKK  764 (764)
T ss_pred             ccchhhhhhhhhhhhhcccchhhhHhhhhcceeEecCCCCCc-eEEEEeEEEeccCCCCC
Confidence            99999999 899999999999999999999999999999999 99999999999999884

>PLN02859 glutamine-tRNA ligase

Probab=100.00  E-value=4.6e-214  Score=1844.03  Aligned_cols=755  Identities=45%  Similarity=0.807  Sum_probs=706.0

Q ss_pred             HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575         62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL  141 (832)
Q Consensus        62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl  141 (832)
                      +++++++|++|||+|+||+||+||++|+++|..+|++|++ ..+||+++|+|||+|||+++++...||++|++||++|+|
T Consensus         5 ~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~-~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gkI   83 (788)
T PLN02859          5 SEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGV-TNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSKI   83 (788)
T ss_pred             cHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCC-ccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCCC
Confidence            4678999999999999999999999999999999999998 456999999999999999998888999999999999999


Q ss_pred             CCHHhHHHHHHHHHhCCCc-cCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCCCCC
Q psy17575        142 DSTLRVDAALEYVLSHVNA-VNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWAD  220 (832)
Q Consensus       142 kt~~Ql~aAlkyl~~~~~~-~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~LkWAd  220 (832)
                      ||++||+||++|+++++.+ +|.++||++|||||+||+|||+++|++||++|+++|+++||++|+|.||++||+.|||||
T Consensus        84 kT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwad  163 (788)
T PLN02859         84 KTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWAD  163 (788)
T ss_pred             CCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCCC
Confidence            9999999999999999764 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHhhcCCCcccccCCCCccccccccCCCCCcccccCCccccccchhhhhhcc-ccCCCCCCCCCccCCc
Q psy17575        221 GKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMK-KLPFHKPGENFKSDGY  299 (832)
Q Consensus       221 ~k~vK~~vD~~~l~lLGPKte~d~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~n~~~~~~  299 (832)
                      ++.||++||+++++||||||++|.+|++|++++++++..+ . +.   .  .+.....++|++ ...||+||||++++||
T Consensus       164 ~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k~~~~~~~~-~-~~---~--~~~~~~~~~~~~~~~~~~~p~en~~~~~~  236 (788)
T PLN02859        164 PKIVKKLIDKKLYELLGEKTAADNEKPVKKKKEKPAKVEE-K-KV---A--VAAAPPSEEELNPYSIFPQPEENFKVHTE  236 (788)
T ss_pred             HHHHHHHHHHHHHHhcCCcchhhhcccccccccccccccc-c-cc---c--ccccccchhhccccccCCCccccccccce
Confidence            9999999999999999999999998665544333321111 0 00   0  112233456766 7789999999999999


Q ss_pred             cccc--------ccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHH
Q psy17575        300 VVTE--------QTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFF  371 (832)
Q Consensus       300 ~~~~--------~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~  371 (832)
                      |+++        |++++|++||++++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~  316 (788)
T PLN02859        237 VFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYI  316 (788)
T ss_pred             eeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHH
Confidence            9988        99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCC--CCCCCCCCChhHhHHHHHHHHcC
Q psy17575        372 TGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP--LPSPWRERPVEENVKLFEAMKNG  449 (832)
Q Consensus       372 ~~I~edL~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~--~~~~~R~r~~ee~L~~f~~m~~g  449 (832)
                      ++|+++|+|||+.||+++|||+||+.+|++|.+||++|+||+|+||+|||++.+.  .+|+||+++++|||.+|++|++|
T Consensus       317 ~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g  396 (788)
T PLN02859        317 DHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRG  396 (788)
T ss_pred             HHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhc
Confidence            9999999999999999999999999999999999999999999999999987653  57999999999999999999999


Q ss_pred             cccCCCceEEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHH
Q psy17575        450 LIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWL  526 (832)
Q Consensus       450 ~~~~g~~~lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L  526 (832)
                      ++.+|++|||||+|+.++   ++|+|+|||.+.+|+|+||+||||||||||||||||+|||||||||.||++|+++|+||
T Consensus       397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl  476 (788)
T PLN02859        397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL  476 (788)
T ss_pred             hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence            999999999999999765   48999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCc-ccC
Q psy17575        527 CNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQA-VVS  605 (832)
Q Consensus       527 ~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~-~~~  605 (832)
                      +++|||++|.+|||+|||++|++||||++.++|++|+|+||||||++||++||||||+|+||+|||+.+|||.++. .|+
T Consensus       477 ~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~  556 (788)
T PLN02859        477 LDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIR  556 (788)
T ss_pred             HHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 899


Q ss_pred             HHHHHHHHHHhhccCCCceeEEecCcceEEeecCCCCceeEEee---cCCCCCCCCceeEEeecceeEEeCCcccccccc
Q psy17575        606 PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTV---PDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEK  682 (832)
Q Consensus       606 ~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~---p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~  682 (832)
                      ++.||+|+|+.||+++||+|||+||+||+|+|+|+ +..+++++   |.||+++++|+|+|+|+++||||++||++.+++
T Consensus       557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~-~~~~~~~~~~~P~~p~~~~~g~r~v~f~~~iyIe~~D~~~~~~~  635 (788)
T PLN02859        557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLES-GEVIELDAKRWPDAQNDDPSAFYKVPFSRVVYIERSDFRLKDSK  635 (788)
T ss_pred             HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCC-CceeecccccCCCCCCCccCceEEEEECCeEEEEhHHhhccccc
Confidence            99999999999999999999999999999999998 77778888   555556789999999999999999999999999


Q ss_pred             CccccCCCCeeeeeecCceEEEeeEe-ecCCCCEEEEEEEEcCCCCCCCCceEEEeccC------CceeEEEEcccccCC
Q psy17575        683 GYRRLAPGQGVGLRYAGLVLEVDKVN-TKCNGAITSIDVKATPVDVDNKPKAFIHWVAR------PISIEVRLYSTLFLH  755 (832)
Q Consensus       683 ~~~rL~~~~~V~L~~~~~~~~~~~~~-~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~------~~~~evr~y~~Lf~~  755 (832)
                      +|+||+||++|+|+++ |+|.|++++ +|++|+|++|+|+|++.+. .|+|++|||||+      ++++|+|+|++||++
T Consensus       636 ~~~rL~pg~~V~L~~~-~~i~~~~~~~~d~~g~v~el~~~~d~~~~-~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~  713 (788)
T PLN02859        636 DYYGLAPGKSVLLRYA-FPIKCTDVVLADDNETVVEIRAEYDPEKK-TKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLS  713 (788)
T ss_pred             cceecCCCCEEEEcce-eEEEEEEEEEeCCCCCEEEEEEEEccCCC-CccCceEEeeecCCCCCCceeEEEEeehhhcCC
Confidence            9999999999999765 778899988 8999999999999998754 689999999985      379999999999999


Q ss_pred             CCCCCCCCCCCCccccCCCCceeEEE-EEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575        756 KNPEDTYQVPEGYLSDINPDSLKVSI-GYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS  832 (832)
Q Consensus       756 ~~p~~~~~~~~~~~~~iN~~S~~~~~-~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~  832 (832)
                      ++|++.    ++|+++|||+|+.++. |++|++++++++||+|||||+||||||+||+++ ++||||||+||++|+|+
T Consensus       714 ~~p~~~----~~~~~~iNp~S~~v~~~a~~e~~~~~~~~~~~~QfeR~GYF~~D~ds~~~-~~vfNr~v~Lkd~~~k~  786 (788)
T PLN02859        714 ENPAEL----EDWLEDLNPQSKEVISGAYAVPSLKDAKVGDRFQFERLGYFAVDKDSTPE-KLVFNRTVTLKDSYGKG  786 (788)
T ss_pred             CCCccc----ccHHHhCCCCccEEEeceEEcHhHhhCCCCCeEEEEeeeEEeccCCCCCC-CeEEEeeeecccccccc
Confidence            999754    5799999999999997 999999999999999999999999999999988 99999999999999874

>PTZ00437 glutaminyl-tRNA synthetase; Provisional

Probab=100.00  E-value=7.9e-152  Score=1287.55  Aligned_cols=535  Identities=44%  Similarity=0.794  Sum_probs=508.1

Q ss_pred             cCCCCCCCCCccCCcccccccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcc
Q psy17575        285 LPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE  364 (832)
Q Consensus       285 ~~~~~~g~n~~~~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~  364 (832)
                      ..||..+++....||   .|+++++++|++.++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+
T Consensus        20 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp~   96 (574)
T PTZ00437         20 RDLSLLQTGRPVPGC---RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPE   96 (574)
T ss_pred             cchhhhcccCCCccc---CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCcc
Confidence            556777777766666   57899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHcCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHH
Q psy17575        365 KEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKL  442 (832)
Q Consensus       365 r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~  442 (832)
                      |+.++|+++|+++|+|||+.||++++||+||+.||++|.+||++|+||+|+||+|||++.+  +.+|+||+++++|||++
T Consensus        97 r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~~~~eenL~l  176 (574)
T PTZ00437         97 TEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEENLLL  176 (574)
T ss_pred             ccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCccccCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998764  45799999999999999


Q ss_pred             HHHHHcCcccCCCceEEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeeccccccc
Q psy17575        443 FEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSR  519 (832)
Q Consensus       443 f~~m~~g~~~~g~~~lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~  519 (832)
                      |++|++|.+.+|++|||+|+|+.++   ++|+|+|||.+.+|||+||+|+||||||||||||||+|||||||||.||..+
T Consensus       177 fe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r  256 (574)
T PTZ00437        177 FEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETR  256 (574)
T ss_pred             HHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcc
Confidence            9999999999999999999999874   4899999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhcCCCCCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575        520 RSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG  599 (832)
Q Consensus       520 ~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~  599 (832)
                      ++.|+||+++|+++.|.+|+|+|||++|++||||++.++|++|+|+||||||++||++||||||+||||+|||+.+|||+
T Consensus       257 ~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk  336 (574)
T PTZ00437        257 RESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITR  336 (574)
T ss_pred             cHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCHHHHHHHHHHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccc-c
Q psy17575        600 AQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFK-V  678 (832)
Q Consensus       600 ~~~~~~~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~-~  678 (832)
                      +++.|+|++||++||++||+.|||+|||+||++|+|+|++.   .+++++|+||++|++|+|+|+|+++||||++||+ +
T Consensus       337 ~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~---~~~~~~p~hP~~~~~G~R~i~~~~~iyIe~~D~~~~  413 (574)
T PTZ00437        337 SMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKG---EREFECPNHPRKPELGSRKVMFTDTFYVDRSDFRTE  413 (574)
T ss_pred             cceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCC---ceEEeccCCCCCCcCceEEEEEcCeEEEEHHHhhcc
Confidence            99999999999999999999999999999999999999764   3778999999999999999999999999999998 5


Q ss_pred             ccccCccccCCCC-eeeeeecCceEEEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEeccCC--ceeEEEEcccccCC
Q psy17575        679 IQEKGYRRLAPGQ-GVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARP--ISIEVRLYSTLFLH  755 (832)
Q Consensus       679 ~~~~~~~rL~~~~-~V~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~~--~~~evr~y~~Lf~~  755 (832)
                      .++++|+||+||+ .|+||++++| .|+++.+|.+|+|++++|.++... .+|+|++|||||+.  ++++||+|++||++
T Consensus       414 ~~~~~f~rL~~g~~~vrL~~~~~i-~~~~~~~d~~g~v~~~~~~~d~~~-~~k~k~~IhWvs~~~~v~~evr~Yd~Lf~~  491 (574)
T PTZ00437        414 DNNSKFYGLAPGPRVVGLKYSGNV-VCKGFEVDAAGQPSVIHVDIDFER-KDKPKTNISWVSATACTPVEVRLYNALLKD  491 (574)
T ss_pred             cccccceecCCCCeEEEeccEEEE-EEEEEEECCCCCEEEEEEEecccc-cccCCCeEEEeecCCceeEEEEeccccccC
Confidence            6789999999997 8999999865 688899999999999999998874 57889999999964  89999999999999


Q ss_pred             CCCCCCCCCCCCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575        756 KNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS  832 (832)
Q Consensus       756 ~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~  832 (832)
                      ++|+.+    ++|+++|||+|+.+..|++|+++.++++|++|||||+|||+||++|+++ ++||||||+||++++|.
T Consensus       492 ~~p~~~----~~~~~~iNp~s~~~~~g~~E~~~~~~~~~~~~QfeR~Gyf~vD~ds~~~-~~vfNr~v~Lkd~~~K~  563 (574)
T PTZ00437        492 DRAAID----PEFLKFIDEDSEVVSHGYAEKGIENAKHFESVQAERFGYFVVDPDTRPD-HLVMNRVLGLREDKEKA  563 (574)
T ss_pred             CCCCcc----ccHhhhCCCCceEEEEEEEchhhhhCCCCCeEEEEEeEEEEeCCCCCCC-CEEEEeeeEcccccccc
Confidence            999643    6899999999999989999999999999999999999999999998888 99999999999998773

>PRK05347 glutaminyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.1e-149  Score=1271.66  Aligned_cols=520  Identities=47%  Similarity=0.845  Sum_probs=492.2

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~  384 (832)
                      .+++.+.|+.. .++|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus        15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~   94 (554)
T PRK05347         15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD   94 (554)
T ss_pred             HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence            45566666643 35899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      || .+++||+||+.||++|.+||++|+||+|+||+|||++.+      +.+|+||+++++|+|++|++|++|.+.+|+++
T Consensus        95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v  174 (554)
T PRK05347         95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV  174 (554)
T ss_pred             CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence            95 789999999999999999999999999999999998654      46899999999999999999999999999999


Q ss_pred             EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCC-C
Q psy17575        458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI-Y  533 (832)
Q Consensus       458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~-~  533 (832)
                      ||+|+|+.++   ++|||+||+.+.||||+||+||||||||||||||||+|||||||||.||++|+++|.||+++||+ +
T Consensus       175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~  254 (554)
T PRK05347        175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP  254 (554)
T ss_pred             EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence            9999999875   37999999999999999999999999999999999999999999999999999999999999985 5


Q ss_pred             CCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       534 ~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                      .|.||+|+|||++|++||||++.++|++|.|+||||||++||++||||||+||||+|||+.+|||.++..|+|++||++|
T Consensus       255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n  334 (554)
T PRK05347        255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI  334 (554)
T ss_pred             CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCee
Q psy17575        614 REVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGV  693 (832)
Q Consensus       614 r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V  693 (832)
                      |++||+.|||+|||.||++|+|+|+++ ...+.+++|+||+++++|+|+|+|+++||||++||++.++++|+||+||++|
T Consensus       335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~-~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~~~~~~~~~rl~~g~~v  413 (554)
T PRK05347        335 REDLNENAPRAMAVLDPLKLVITNYPE-GQVEELEAPNHPEDPEMGTREVPFSRELYIEREDFMEEPPKKYFRLVPGKEV  413 (554)
T ss_pred             HHHhccCCCceEEEcCCeEEEEEeCCC-CceEEEEecCCCCCCcCceEEEEEcCeEEEEhHHhhccccccccccCCCCEE
Confidence            999999999999999999999999987 6778899999999999999999999999999999999999999999999999


Q ss_pred             eeeecCceEEEeeEeecCCCCEEEEEEEEcCCC------CCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCC
Q psy17575        694 GLRYAGLVLEVDKVNTKCNGAITSIDVKATPVD------VDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVP  765 (832)
Q Consensus       694 ~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~------~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~  765 (832)
                      +||++++ |.|+++.+|.+|.|++++|++++.+      +.+|+|++|||||+  .++++||+|++||++++|++.    
T Consensus       414 rL~~~~~-i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~~~v~~~v~~yd~Lf~~~~p~~~----  488 (554)
T PRK05347        414 RLRNAYV-IKCEEVVKDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNPAAG----  488 (554)
T ss_pred             EecCEEE-EEEEEEEEcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecCCCEeEEEEEeccccCCCCCCcc----
Confidence            9999865 5789999999999999999998763      56788999999985  489999999999999999743    


Q ss_pred             CCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccCCCCC
Q psy17575        766 EGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGKS  832 (832)
Q Consensus       766 ~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~~~k~  832 (832)
                      ++|+++|||+|+.+..|++|+++.++++|++|||||+|||+||++++++ ++||||||+||++++|.
T Consensus       489 ~~~~~~iN~~s~~~~~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~-~~v~n~~v~l~d~~~k~  554 (554)
T PRK05347        489 KDFLDFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREGYFCADKDSTPG-KLVFNRTVGLRDSWAKI  554 (554)
T ss_pred             ccHhHhcCCCceEEEeEEEcHHHhhCCCCCEEEEEEeeEEEecCCCCCC-CeEEEeeeecccccCCC
Confidence            6899999999998888999999999999999999999999999988888 99999999999999874

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=100.00  E-value=1.5e-145  Score=1281.62  Aligned_cols=520  Identities=43%  Similarity=0.771  Sum_probs=494.5

Q ss_pred             HHHHHHhhhh-cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575        306 HDLLREHIKY-TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       306 ~~~~~~hl~~-~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~  384 (832)
                      .+++++||+. ..|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus        17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~   96 (771)
T PRK14703         17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD   96 (771)
T ss_pred             HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence            6889999998 678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCc-ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        385 PYQ-ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       385 pd~-~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      ||+ +++||+||+.||++|.+||++|+||+|+||++||++.+      +.+|+||+++++|++.+|++|++|.+.+|+++
T Consensus        97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v  176 (771)
T PRK14703         97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV  176 (771)
T ss_pred             CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence            995 69999999999999999999999999999999998754      46899999999999999999999999999999


Q ss_pred             EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC-
Q psy17575        458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY-  533 (832)
Q Consensus       458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~-  533 (832)
                      ||+|+++.++   ++|||+||+...||||+||+||||||||||||||||+|||||||||.||.+++++|+||+++||+. 
T Consensus       177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~  256 (771)
T PRK14703        177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP  256 (771)
T ss_pred             EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence            9999999875   379999999999999999999999999999999999999999999999999999999999999653 


Q ss_pred             -CCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575        534 -CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV  612 (832)
Q Consensus       534 -~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~  612 (832)
                       .|.||+|+|||+.|++||||++.++|++|.|+||||||++||++||||||+||||+|||+.+|||++++.++|++||++
T Consensus       257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~  336 (771)
T PRK14703        257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA  336 (771)
T ss_pred             CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence             5999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCC-CCCceeEEeecceeEEeCCccccccccCccccCCCC
Q psy17575        613 VREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND-ATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQ  691 (832)
Q Consensus       613 ~r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~-~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~  691 (832)
                      ||++||+.|||+|||+||++|+|+|.++ +.++++++|+||++ |++|+|+|+|+++||||++||++.++++|+||+||+
T Consensus       337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~-~~~~~~~~p~hp~~~~~~G~r~v~~~~~iyIe~~D~~~~~~~~~~~l~~g~  415 (771)
T PRK14703        337 IRDDLNRRAPRVMAVLDPLKVVIENLPA-GKVEELDLPYWPHDVPKEGSRKVPFTRELYIERDDFSEDPPKGFKRLTPGR  415 (771)
T ss_pred             HHHHhccCCCceEEEcCCeEEEEEeCCC-CceEEEeccCCCCCCccCceEEEEEcCeEEEEhhHhhccccccccccCCCC
Confidence            9999999999999999999999999987 77899999999997 899999999999999999999999999999999999


Q ss_pred             eeeeeecCceEEEeeEeecCCCCEEEEEEEEcCCCC-----CCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCC
Q psy17575        692 GVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDV-----DNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQV  764 (832)
Q Consensus       692 ~V~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~-----~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~  764 (832)
                      +|+||++++ |.|+++.+|++|.|++++|++++.+.     .+|++++|||||.  .++++||+|++||++++|++.   
T Consensus       416 ~vrL~~~~~-i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~~~v~~~vr~Yd~Lf~~~~p~~~---  491 (771)
T PRK14703        416 EVRLRGAYI-IRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQPEAA---  491 (771)
T ss_pred             EEEecceEE-EEEEEEEEcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecCCCeeEEEEecccccCCCCCCcc---
Confidence            999999865 57899999999999999999988764     3678889999985  489999999999999999632   


Q ss_pred             CCCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccCCCC
Q psy17575        765 PEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKEDSGK  831 (832)
Q Consensus       765 ~~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~~~k  831 (832)
                      +++|+++|||+|+.++.|++|+++.++++|++|||||+|||+||+ +|+++ ++||||||+||++|+|
T Consensus       492 ~~~~~~~lN~~Sl~~~~g~~e~~~~~~~~~~~~QfeR~Gyf~~D~~d~~~~-~~vfNr~v~lkd~~~~  558 (771)
T PRK14703        492 DEDFLEFLNPDSLRVAQGRVEPAVRDDPADTRYQFERQGYFWADPVDSRPD-ALVFNRIITLKDTWGA  558 (771)
T ss_pred             ccchHhhcCCCCceeEccEEcHhHhhCCCCCEEEEEEeEEEEEccCCCCCC-CeEEEeecccCccccc
Confidence            468999999999999999999999999999999999999999997 66677 9999999999999986

>TIGR00440 glnS glutaminyl-tRNA synthetase

Probab=100.00  E-value=1.3e-143  Score=1220.12  Aligned_cols=502  Identities=47%  Similarity=0.838  Sum_probs=477.5

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQL  398 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~~  398 (832)
                      |+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||+.|| .+++||+||+.|
T Consensus         1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~   80 (522)
T TIGR00440         1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL   80 (522)
T ss_pred             CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999995 689999999999


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CC
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQ  469 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~  469 (832)
                      |++|.+||++|+||+|+||+|||++.+      +.+|+||+++++|+|++|++|++|++++|++|||||+|+.++   ++
T Consensus        81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r  160 (522)
T TIGR00440        81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR  160 (522)
T ss_pred             HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence            999999999999999999999998765      357999999999999999999999999999999999999764   48


Q ss_pred             CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC-CCCcccccccCCCCc
Q psy17575        470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY-CPVQWEYGRLNVNYT  548 (832)
Q Consensus       470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~-~P~~~ef~hL~l~gt  548 (832)
                      |+|+|||.+.+|+|+||+|+||||||||||||||+|||||||||+||++||++|.||+++|+++ .|.||+|+|||++|+
T Consensus       161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~  240 (522)
T TIGR00440       161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT  240 (522)
T ss_pred             eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998 899999999999999


Q ss_pred             ccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEe
Q psy17575        549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVI  628 (832)
Q Consensus       549 kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~  628 (832)
                      |||||++.++|++|.|+||||||++||++||||||+||||+|||+.+|||.++..+++..|++++|+++++.++|+|||+
T Consensus       241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~  320 (522)
T TIGR00440       241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI  320 (522)
T ss_pred             CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             cCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEe
Q psy17575        629 DPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN  708 (832)
Q Consensus       629 dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~  708 (832)
                      ||+||+|+|++. . .+..++|+||+++++|+|.++|+++||||++||++.++++|+||+||++|+||++++ |.|+++.
T Consensus       321 d~~kl~i~~~~~-~-~~~~~~p~~p~~~~~g~r~v~~~~~i~Ie~~D~~~~~~~~f~~l~~g~~vrL~~~~~-i~~~~~~  397 (522)
T TIGR00440       321 DPVEVVIENLSD-E-YELATIPNHPNTPEFGERQVPFTNEFYIDRADFREEANKQYKRLVLGKEVRLRNAYV-IKAERVE  397 (522)
T ss_pred             ccceEEEecCCC-C-ceEEeccCCCCChhHeeEEEEecceeEEEHHHhhccccccccccCCCCEEEeCCEEE-EEEEEEE
Confidence            999999999875 3 346789999999999999999999999999999999999999999999999999865 5689999


Q ss_pred             ecCCCCEEEEEEEEcCC------CCCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEE
Q psy17575        709 TKCNGAITSIDVKATPV------DVDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVS  780 (832)
Q Consensus       709 ~~~~g~v~e~~~~~~~~------~~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~  780 (832)
                      +|++|.|++++|++++.      ++.+|+|++|||||+  .++||+|+|++||++++|++.    ++|++++||+|+.+.
T Consensus       398 ~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~evr~yd~Lf~~~~p~~~----d~~~~~~np~s~~~~  473 (522)
T TIGR00440       398 KDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNPGAP----DDFLSVINPESLVIK  473 (522)
T ss_pred             ecCCCCEEEEEEEEccccccCCccccccCCcEEEeeecCCCeeEEEEecccccCCCCCCcc----ccHhhhCCCCceEEE
Confidence            99999999999999875      356888999999985  389999999999999999853    689999999999988


Q ss_pred             EEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccCC
Q psy17575        781 IGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKEDS  829 (832)
Q Consensus       781 ~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~~  829 (832)
                      .|++|++++++++|++|||||+||||||+ +++++ ++||||||+||++|
T Consensus       474 ~~~~E~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~-~~v~Nr~v~l~d~~  522 (522)
T TIGR00440       474 QGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTE-KVVFNRTVSLKDAT  522 (522)
T ss_pred             EEEEchhHhhCCCCCEEEEEEeEEEEEccCCCCCC-CeEEEeeeecCCCC
Confidence            89999999999999999999999999995 66667 99999999999986

This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.

>PLN03233 putative glutamate-tRNA ligase; Provisional

Probab=100.00  E-value=3.9e-139  Score=1182.29  Aligned_cols=492  Identities=32%  Similarity=0.518  Sum_probs=459.5

Q ss_pred             cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhH
Q psy17575        316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYF  395 (832)
Q Consensus       316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~  395 (832)
                      ++|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||+.||++++||+||
T Consensus         8 ~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr~   87 (523)
T PLN03233          8 IAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDYF   87 (523)
T ss_pred             CCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCccccccH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCC
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQD  470 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D  470 (832)
                      +.||++|.+||++|+||+|+||+|||++.+  ..+|+||+++++|++++|++|++|.+.+|++++|+|+++.+.   ++|
T Consensus        88 ~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D  167 (523)
T PLN03233         88 EPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRD  167 (523)
T ss_pred             HHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCcC
Confidence            999999999999999999999999998764  357899999999999999999999999899999999998653   489


Q ss_pred             ceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCccc
Q psy17575        471 PVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV  550 (832)
Q Consensus       471 ~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkL  550 (832)
                      ||+||+...+|||+||+|++||||||||||||++|||||||||.||+++|++|.||+++||++.|.+|+|+|||+.|+||
T Consensus       168 ~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~kL  247 (523)
T PLN03233        168 PVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTVL  247 (523)
T ss_pred             CEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEe--
Q psy17575        551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVI--  628 (832)
Q Consensus       551 SKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~--  628 (832)
                      |||++.++|++|.|+||||||++||++||||||+||||+|||+.+|+|.+++.++|++||++||++||+.|||+|||.  
T Consensus       248 SKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~~  327 (523)
T PLN03233        248 SKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDKA  327 (523)
T ss_pred             cccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             cCcceEEeecCCCCcee-EEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeE
Q psy17575        629 DPLPLHIVNFDQLNVDT-KFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV  707 (832)
Q Consensus       629 dp~kl~i~N~~~~~~~~-~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~  707 (832)
                      +|++|+|+|++. +..+ .+++|+||++|++|+|+|+|+++||||++||+        +|+||++|+||+|||+ .|+++
T Consensus       328 ~pv~v~i~n~~~-~~~~~~~~~p~hP~~~~~G~r~v~~~~~iyIe~~D~~--------~l~~g~~vrL~~~~~i-~~~~~  397 (523)
T PLN03233        328 DHTALTVTNADE-EADFAFSETDCHPKDPGFGKRAMRICDEVLLEKADTE--------DIQLGEDIVLLRWGVI-EISKI  397 (523)
T ss_pred             CcEEEEecCCCC-ccceeccccccCCCCCCCceEEEEECCcEEEEHhHHh--------hcCCCCEEEeCceeeE-EEEEE
Confidence            699999999986 5433 35899999999999999999999999999996        6999999999999975 68888


Q ss_pred             eecCCCCEEEEEEEEcCCCCCCCCceEEEeccC---CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q psy17575        708 NTKCNGAITSIDVKATPVDVDNKPKAFIHWVAR---PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYA  784 (832)
Q Consensus       708 ~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~---~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~  784 (832)
                      ++|.+|+++       +.++.+|+|++|||||+   .+++++++|++||++++|++.    ++|+++|||+|+.+..|++
T Consensus       398 ~~d~~~~~~-------~~~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~~~~~~~~----~~~~~~~n~~S~~~~~~~~  466 (523)
T PLN03233        398 DGDLEGHFI-------PDGDFKAAKKKISWIADVSDNIPVVLSEFDNLIIKEKLEED----DKFEDFINPDTLAETDVIG  466 (523)
T ss_pred             EecCceEEe-------eCCCCcccccEEEEcCCCCCccceEEEecccccCCCCCCcc----cChhhhcCCCceEEEeEEE
Confidence            888777553       23456788889999984   389999999999999999753    6899999999999999999


Q ss_pred             ecCccCCCCCCeEEeEEeeeEEEecC-CCCCCccEEEeeeccccC
Q psy17575        785 DSGFVGVKPYDRFQFERVGFFTVDRD-SNINHKPVVNLTVSLKED  828 (832)
Q Consensus       785 e~~~~~~~~~~~~QfeR~Gyf~~D~~-~~~~~~lv~n~~v~lk~~  828 (832)
                      |+++.++++|++|||||+|||+||+. ++++..+||+.|..-|..
T Consensus       467 e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~~~~~~~ipdg~~k  511 (523)
T PLN03233        467 DAGLKTLKEHDIIQLERRGFYRVDRPYMGEEKPLILFMIPDGKKK  511 (523)
T ss_pred             chhHhhCCCCCeEEEEEeeEEEEccCCCCCCceEEEEECCCCCcc
Confidence            99999999999999999999999984 555545699988876654

>PTZ00402 glutamyl-tRNA synthetase; Provisional

Probab=100.00  E-value=3.4e-136  Score=1168.33  Aligned_cols=496  Identities=34%  Similarity=0.517  Sum_probs=466.7

Q ss_pred             cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchh
Q psy17575        316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDY  394 (832)
Q Consensus       316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~  394 (832)
                      ++|+|+||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||+.||+ ++|||+|
T Consensus        49 ~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSdr  128 (601)
T PTZ00402         49 EEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSDY  128 (601)
T ss_pred             CCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeecccc
Confidence            467899999999999999999999999999999999999999999999999999999999999999999996 8999999


Q ss_pred             HHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CC
Q psy17575        395 FHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQ  469 (832)
Q Consensus       395 ~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~  469 (832)
                      |+.||++|.+||++|+||+|+||+|+|++.+  +.+|+||+++++|++.+|+.|++|.+.+|.+++|+|+++.++   ++
T Consensus       129 ~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~r  208 (601)
T PTZ00402        129 MDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMR  208 (601)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCcc
Confidence            9999999999999999999999999997653  578999999999999999999999888889999999998764   58


Q ss_pred             CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcc
Q psy17575        470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTV  549 (832)
Q Consensus       470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtk  549 (832)
                      |||+||+...+|+|+||+|++||||||||||||++|||||||||.||+++|++|.||+++||++.|.+|+|++|+++|++
T Consensus       209 D~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~k  288 (601)
T PTZ00402        209 DPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYSV  288 (601)
T ss_pred             CCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEec
Q psy17575        550 VSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVID  629 (832)
Q Consensus       550 LSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~d  629 (832)
                      ||||++.++|++|+|.||||||++||++|||||++|+||++||..+|+|++++.|+|++||++||++|++.|||+|||+|
T Consensus       289 LSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~~  368 (601)
T PTZ00402        289 MSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVSN  368 (601)
T ss_pred             ccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEe-
Q psy17575        630 PLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN-  708 (832)
Q Consensus       630 p~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~-  708 (832)
                      |++|+|+|.++ +..+.+++|+||++|++|+|+++|+++||||++||+        ||+||++|+||+|||++ |.++. 
T Consensus       369 p~kv~i~~~~~-~~~~~~~~p~hP~~~~~G~r~i~~~~~iyIe~~D~~--------~l~~g~~vrL~~~gn~~-i~~~~~  438 (601)
T PTZ00402        369 TLKVRCTVEGQ-IHLEACEKLLHKKVPDMGEKTYYKSDVIFLDAEDVA--------LLKEGDEVTLMDWGNAY-IKNIRR  438 (601)
T ss_pred             CCEEEEEECCC-CcceEeeccCCCCCcccCceEEEECCeEEEEhhhHh--------hcCCCCEEEEeccCCEE-EEEEEe
Confidence            99999999887 666788999999999999999999999999999986        79999999999999975 44443 


Q ss_pred             ecCCCCEEEEEEEEcCCCCCCCCceEEEeccCC---ceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q psy17575        709 TKCNGAITSIDVKATPVDVDNKPKAFIHWVARP---ISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYAD  785 (832)
Q Consensus       709 ~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~~---~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e  785 (832)
                      ++.+|+|++++|++++.++.+|+|++|||||..   +++++|+|++||++++|++.    ++|++.+||+|+.+..|++|
T Consensus       439 ~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~p~~~----~~~~~~ln~~s~~~~~~~~E  514 (601)
T PTZ00402        439 SGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKKPDPE----ESIDDIIAPVTKYTQEVYGE  514 (601)
T ss_pred             eCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEecccccCCCCCCcc----ccHHHhcCCCChheEEEEEc
Confidence            457899999999999988889999999999863   68999999999999999753    57999999999999889999


Q ss_pred             cCccCCCCCCeEEeEEeeeEEEecCCCCCCccEEEeeeccccC
Q psy17575        786 SGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKED  828 (832)
Q Consensus       786 ~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~n~~v~lk~~  828 (832)
                      +++.++++|++|||||+|||+||+++ ++  .||..|..-|..
T Consensus       515 ~~~~~~~~~~~~QfeR~Gyf~~D~~~-~~--~vl~~ipdg~~~  554 (601)
T PTZ00402        515 EALSVLKKGDIIQLERRGYYIVDDVT-PK--KVLIAIPDGREK  554 (601)
T ss_pred             hhHhhCCCCCEEeEEEeEEEEEecCC-CC--eEEEECCCCccc
Confidence            99999999999999999999999854 33  488877776644

>PLN02907 glutamate-tRNA ligase

Probab=100.00  E-value=4.5e-134  Score=1186.60  Aligned_cols=493  Identities=30%  Similarity=0.509  Sum_probs=467.4

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFH  396 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~  396 (832)
                      +|+|+||||||||||||||||||||+||+|||++||+|+||||||||+|+.++|+++|++||+|||++||++++||+||+
T Consensus       211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~  290 (722)
T PLN02907        211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFP  290 (722)
T ss_pred             CCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCCc
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDP  471 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D~  471 (832)
                      .||++|.+||++|+||+|+|+++++++.+  +.+|+||+++++||+++|++|++|.+.+++++||+|+|+.++   ++|+
T Consensus       291 ~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~  370 (722)
T PLN02907        291 QLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDP  370 (722)
T ss_pred             HHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccC
Confidence            99999999999999999999999998653  578999999999999999999999999999999999998764   4899


Q ss_pred             eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcccc
Q psy17575        472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVS  551 (832)
Q Consensus       472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLS  551 (832)
                      |+||+...+|+|+||+|++|||||||||||||+|||||||||.||++|+++|+||+++||++.|.+|+|+|||++|++||
T Consensus       371 v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lS  450 (722)
T PLN02907        371 VYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLS  450 (722)
T ss_pred             EEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEecC-
Q psy17575        552 KRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP-  630 (832)
Q Consensus       552 KRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~dp-  630 (832)
                      ||++.++|++|+|+||||||++|++++|||||+|+||++||..+|+|++++.|+|++||++||++||+.|||+|||+|| 
T Consensus       451 KR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~  530 (722)
T PLN02907        451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEG  530 (722)
T ss_pred             ccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -cceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEee
Q psy17575        631 -LPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNT  709 (832)
Q Consensus       631 -~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~  709 (832)
                       ++|+|+|+++  .++.+++|+||+|+++|+|+|+|+++||||++||+        +|+||++|+||+|||++ |+++.+
T Consensus       531 ~v~~~i~~~~~--~~~~~~~p~hp~~~~~g~r~~~~~~~i~i~~~D~~--------~l~~g~~v~L~~~~~~~-i~~~~~  599 (722)
T PLN02907        531 RVLLTLTDGPE--TPFVRIIPRHKKYEGAGKKATTFTNRIWLDYADAE--------AISEGEEVTLMDWGNAI-IKEITK  599 (722)
T ss_pred             EEEEEEcCCCC--CceeeeccCCCCCCccceEEEEECCcEEEEcchHh--------hcCCCCEEEEcccCCEE-EEEEEE
Confidence             8888999875  36788999999999999999999999999999997        48899999999999976 778889


Q ss_pred             cCCCCEEEEEEEEcCCCCCCCCceEEEeccC---CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEeec
Q psy17575        710 KCNGAITSIDVKATPVDVDNKPKAFIHWVAR---PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADS  786 (832)
Q Consensus       710 ~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~---~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e~  786 (832)
                      |++|+|+++.|++++.++.+|+|++|||||+   .+++++++|++||++++|++.    ++|+++|||+|+.+..|++|+
T Consensus       600 ~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~~~~~~~~~~~d~l~~~~~~~~~----~~~~~~~n~~s~~~~~~~~e~  675 (722)
T PLN02907        600 DEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKKLEED----DNFLDVLNPCTKKETAALGDS  675 (722)
T ss_pred             CCCCcEEEEEEEEccccCCCcCCCeEEEecCCCCceEEEEEccccccccCCCccc----cchhHhcCCCceeEEEEEEcH
Confidence            9999999999999999888999999999985   379999999999999999754    689999999999999999999


Q ss_pred             CccCCCCCCeEEeEEeeeEEEecC-CCCCCccEEEeeec
Q psy17575        787 GFVGVKPYDRFQFERVGFFTVDRD-SNINHKPVVNLTVS  824 (832)
Q Consensus       787 ~~~~~~~~~~~QfeR~Gyf~~D~~-~~~~~~lv~n~~v~  824 (832)
                      ++.++++|++|||||+|||+||+. ++++..+||-.|..
T Consensus       676 ~~~~~~~~~~~QfeR~Gy~~~D~~~~~~~~~~~~~~ip~  714 (722)
T PLN02907        676 NMRNLKRGEIIQLERKGYYRCDAPFVRSSKPIVLFAIPD  714 (722)
T ss_pred             hHhhCCCCCeEEEEEeEEEEECcCCCCCCceEEEEECCC
Confidence            999999999999999999999984 44553567865554

>KOG1147|consensus

Probab=100.00  E-value=6.7e-122  Score=1009.39  Aligned_cols=497  Identities=34%  Similarity=0.564  Sum_probs=464.5

Q ss_pred             cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhH
Q psy17575        316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYF  395 (832)
Q Consensus       316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~  395 (832)
                      ..|+|+|||||+|+||||||||+|||+|++||.+++|++|+|||||||++|.++|.+.|++||..|||+||.++|+||||
T Consensus       197 e~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDyF  276 (712)
T KOG1147|consen  197 EMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDYF  276 (712)
T ss_pred             ccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhhH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhcc--CCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCC
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGF--NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQD  470 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~--~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D  470 (832)
                      +.+++++++||+.|+||++..+.|+|+..  .+.+|.||++++||||++|++|..|....-.+|+|+|+||.++   ++|
T Consensus       277 ~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMRD  356 (712)
T KOG1147|consen  277 DEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMRD  356 (712)
T ss_pred             HHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCccccC
Confidence            99999999999999999999999999864  4578999999999999999999999755446899999999885   489


Q ss_pred             ceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCccc
Q psy17575        471 PVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV  550 (832)
Q Consensus       471 ~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkL  550 (832)
                      ||+|||...||||||++|.|||||||||+|+|+++||||.||+.|+.++.++|+|++++||+++|..|+|+|||+.+|+|
T Consensus       357 PviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTvL  436 (712)
T KOG1147|consen  357 PVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTVL  436 (712)
T ss_pred             CeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEecC
Q psy17575        551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP  630 (832)
Q Consensus       551 SKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~dp  630 (832)
                      ||||+.++|++|+|+||||||++|+++.+|||++.|+|++|+..+|.|++-.+++|+.+|+||+++|||.|||++||..+
T Consensus       437 SKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~~  516 (712)
T KOG1147|consen  437 SKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVKE  516 (712)
T ss_pred             hhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             c--ceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEe
Q psy17575        631 L--PLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN  708 (832)
Q Consensus       631 ~--kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~  708 (832)
                      .  .+++.|.|.  .+..-..|.||+||+.|.++|.|++.||||+.|++.        |..|++|+||+|||++ |+++.
T Consensus       517 ~~V~v~i~~~~~--~~~~~~~PkHkKn~~lG~K~v~~~~~I~le~~Da~~--------l~~gEevTlmnWGN~~-i~ki~  585 (712)
T KOG1147|consen  517 DRVEVTITNGPQ--EEYIEVSPKHKKNPELGEKKVIYSKKILLEQADAEA--------LKEGEEVTLMNWGNAI-IKKIN  585 (712)
T ss_pred             ceEEEecCCCCC--cchhhccccCCCCcccCccceeeccceeEeccchhh--------hcCCcEEEEEecccee-eEEee
Confidence            4  455667654  223335789999999999999999999999999986        5679999999999986 89999


Q ss_pred             ecCCCCEEEEEEEEcCCCCCCCCceEEEeccC---CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEee
Q psy17575        709 TKCNGAITSIDVKATPVDVDNKPKAFIHWVAR---PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYAD  785 (832)
Q Consensus       709 ~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~---~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e  785 (832)
                      +|.+|+||.+.++++++++.+|+|.+++|+++   .+++.+..|++|++++..+++    ++|.+++||||.....+++|
T Consensus       586 kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~~vpv~lv~fd~lItK~~le~d----Ed~k~f~n~~t~~~~~~~gd  661 (712)
T KOG1147|consen  586 KDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTNDSVPVDLVDFDHLITKDKLEKD----EDFKDFVNPNTVKETLMLGD  661 (712)
T ss_pred             ccCCceEEEEEEEeccCCccccccceeEEeccCCCccceEEeechhhcchhhcccc----hhHHHhcCCCccccchhccC
Confidence            99999999999999999999999999999996   389999999999998877764    68999999999999999999


Q ss_pred             cCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeecccc
Q psy17575        786 SGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKE  827 (832)
Q Consensus       786 ~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~  827 (832)
                      ++++++|.||+|||||.|||+||. -+..+..+||+-|..-|.
T Consensus       662 ~~ikn~KkGDIIQ~eRkGfy~~D~p~~~~~~p~Vlf~IPdg~t  704 (712)
T KOG1147|consen  662 PAIKNLKKGDIIQLERKGFYICDVPLPKDGKPLVLFSIPDGKT  704 (712)
T ss_pred             hhhhccccCceEEEeccceEEeccccCCCCCcEEEEECCCCCc
Confidence            999999999999999999999997 455555899998876553

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.8e-120  Score=1040.79  Aligned_cols=449  Identities=34%  Similarity=0.547  Sum_probs=418.1

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCc--ccccHHHHHHHHHHHHHcCCCcCcccccchh
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNP--EKEEEKFFTGIKDMVQWLGYKPYQITHSSDY  394 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp--~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~  394 (832)
                      +|+|+|||||||||||||||||||++||+|||++||+|+||||||||  +|+.++|+++|++||+|||+.||++++||+|
T Consensus        99 ~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr  178 (567)
T PRK04156         99 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDR  178 (567)
T ss_pred             CCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccC
Confidence            67899999999999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CC
Q psy17575        395 FHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQ  469 (832)
Q Consensus       395 ~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~  469 (832)
                      |+.||++|.+||++|+||+|+||++++++.+  +.+|+||++++++++++|++|.+|.+.+|+++||+|+|+.+.   ++
T Consensus       179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r  258 (567)
T PRK04156        179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR  258 (567)
T ss_pred             HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence            9999999999999999999999999998653  468999999999999999999999999999999999998653   48


Q ss_pred             CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcc
Q psy17575        470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTV  549 (832)
Q Consensus       470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtk  549 (832)
                      |+|+||+...+|+|+|++|+||||||||||||||+|||||||||.||++|+++|.||+++|||..|.++||++|+++|+|
T Consensus       259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~k  338 (567)
T PRK04156        259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFV  338 (567)
T ss_pred             ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCce
Confidence            99999999899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEec
Q psy17575        550 VSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVID  629 (832)
Q Consensus       550 LSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~d  629 (832)
                      ||||+++++|++|.|+||||||++||++||++|++|+||++||+.+||+.+++.|+|+.|+++||++||+.|+|+|||.|
T Consensus       339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~  418 (567)
T PRK04156        339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVRD  418 (567)
T ss_pred             eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEee
Q psy17575        630 PLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNT  709 (832)
Q Consensus       630 p~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~  709 (832)
                      |++|+|+|.+.    .++++|+||+++++|+|+|+|+++||||++||++.          |+.|+||+|||+. |+++. 
T Consensus       419 pv~v~i~~~~~----~~~~~p~hP~~~~~G~r~v~~~~~i~i~~~D~~~~----------g~~vrL~~~~nv~-~~~~~-  482 (567)
T PRK04156        419 PVELEIEGAEP----LEAKIPLHPDRPERGEREIPVGGKVYVSSDDLEAE----------GKMVRLMDLFNVE-ITGVS-  482 (567)
T ss_pred             ceEEEEcCCCc----eEEEcCCCCCCCCCceEEEEECCeEEEEHHHHhhc----------CCEEEeeeEEEEE-EEEEE-
Confidence            99999999643    78899999999999999999999999999999854          8999999999874 55542 


Q ss_pred             cCCCCEEEEEEEEcCC--CCCCCCc-eEEEeccCC--ceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEe
Q psy17575        710 KCNGAITSIDVKATPV--DVDNKPK-AFIHWVARP--ISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYA  784 (832)
Q Consensus       710 ~~~g~v~e~~~~~~~~--~~~~k~k-~~I~Wv~~~--~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~  784 (832)
                             +++|++++.  ++++|++ .+|||||..  ++++|+.         |       ++          .+..|++
T Consensus       483 -------~~~~~~~~~~~~~~~k~~~~~i~Wv~~~~~v~~~v~~---------~-------~~----------~~~~g~~  529 (567)
T PRK04156        483 -------VDKARYHSDDLEEARKNKAPIIQWVPEDESVPVRVLK---------P-------DG----------GDIEGLA  529 (567)
T ss_pred             -------EEEEEEcCCccccccccCCCEEEEccCCCCeeEEEEC---------C-------Cc----------eEEEEEE
Confidence                   467777665  4677887 499999964  7888885         2       11          3456999


Q ss_pred             ecCccCCCCCCeEEeEEeeeEEEecCCCCC
Q psy17575        785 DSGFVGVKPYDRFQFERVGFFTVDRDSNIN  814 (832)
Q Consensus       785 e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~  814 (832)
                      |+++.++++|++|||||+|||+||+..+++
T Consensus       530 E~~~~~~~~~~~~QfeR~Gf~~~D~~~~~~  559 (567)
T PRK04156        530 EPDVADLEVDDIVQFERFGFVRIDSVEDDE  559 (567)
T ss_pred             chhHhhCCCCCEEEEEEeEEEEEecCCCCe
Confidence            999999999999999999999999975433

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=100.00  E-value=1.7e-120  Score=1039.62  Aligned_cols=459  Identities=30%  Similarity=0.494  Sum_probs=416.6

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFH  396 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~  396 (832)
                      .|+||||||||||||||||||||||+||+||+++||+|+||||||||+|+.++|+++|++||+|||+.||.+++||+||+
T Consensus        91 ~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~~  170 (560)
T TIGR00463        91 MGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRIE  170 (560)
T ss_pred             CCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---CCCc
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDP  471 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---~~D~  471 (832)
                      .||++|.+||++|+||+|+||+++|++.+  +.+|+||+++++|++++|++|++|.+.+++++||+|+|+.++   ++|+
T Consensus       171 ~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~  250 (560)
T TIGR00463       171 EYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDW  250 (560)
T ss_pred             HHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCc
Confidence            99999999999999999999999998653  578999999999999999999999999999999999998654   4899


Q ss_pred             eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCC-ccc
Q psy17575        472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY-TVV  550 (832)
Q Consensus       472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~g-tkL  550 (832)
                      |+||+..+||+|+||+|++||||||||||||++|||||||||.||++||++|.+++.+|||..|.+++|+++.+.+ .+|
T Consensus       251 V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~kL  330 (560)
T TIGR00463       251 VIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRTL  330 (560)
T ss_pred             EEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcEe
Confidence            9999999999999999999999999999999999999999999999999999999999999999877777666654 478


Q ss_pred             chhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEEecC
Q psy17575        551 SKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDP  630 (832)
Q Consensus       551 SKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av~dp  630 (832)
                      |||.....+.+|.|+||||||++||++||+||++|+||++||..+|||.+++.++|+.||++||++||+.|||+|||.||
T Consensus       331 skk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~p  410 (560)
T TIGR00463       331 STSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWNP  410 (560)
T ss_pred             cchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcCC
Confidence            87766666666999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeEeec
Q psy17575        631 LPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTK  710 (832)
Q Consensus       631 ~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~~  710 (832)
                      ++|+|+|+++   ..++++|+||++|++|+|+|+|+++||||++||++         +||++|+||+|||++ |+++.+ 
T Consensus       411 ~~v~i~~~~~---~~~~~~p~hp~~~~~G~r~v~~~~~i~i~~~D~~~---------~~g~~vrL~~~~ni~-~~~~~~-  476 (560)
T TIGR00463       411 VKIEIEGAPE---PKIVERPLHPDNPEVGERKLIYYGEIYVDKDDLEV---------IEGEEVRLMDWGNVI-ITKKND-  476 (560)
T ss_pred             cEEEEecCCC---CeeEEccCCCCCCCCceEEEEECCeEEEEHHHHhh---------CCCCEEEEeecccEE-EEEEeC-
Confidence            9999999874   25568999999999999999999999999999973         589999999999975 666543 


Q ss_pred             CCCCEEEEEEEEcCCCCCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEEEeecCc
Q psy17575        711 CNGAITSIDVKATPVDVDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGF  788 (832)
Q Consensus       711 ~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~~~e~~~  788 (832)
                       +|.+   .+..+..++.+|++++|||||+  .++++++.|++|++                          ++++|+++
T Consensus       477 -~~~~---~~~~~~~~~~~~~~~~i~Wv~~~~~v~~~~~~~d~l~~--------------------------~~~~E~~~  526 (560)
T TIGR00463       477 -DGSM---YHSLNLEGARKKGKHIIHWLPDKDAVKVKVIMPDHLIT--------------------------EGRLEEDA  526 (560)
T ss_pred             -CCcE---EeccccccccccCCCEEEECcCCCceEEEEEcCccccc--------------------------cCccCcch
Confidence             3432   3445555666778889999986  48999999887753                          36678888


Q ss_pred             cCCCCCCeEEeEEeeeEEEecCCCCCCccEE
Q psy17575        789 VGVKPYDRFQFERVGFFTVDRDSNINHKPVV  819 (832)
Q Consensus       789 ~~~~~~~~~QfeR~Gyf~~D~~~~~~~~lv~  819 (832)
                      ...++||+|||||+|||+||+...++...||
T Consensus       527 ~~~~~~~~vQfeR~Gy~~~D~~~~~~~~~~f  557 (560)
T TIGR00463       527 SFEEVGDIIQFERFGFYRLDSADKDGKVYVY  557 (560)
T ss_pred             hhcCCCCEEEEEEeEEEEEccCCCCCceEEE
Confidence            7889999999999999999998655546777

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=9.9e-92  Score=791.36  Aligned_cols=443  Identities=33%  Similarity=0.468  Sum_probs=373.6

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQL  398 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~~  398 (832)
                      ||||||||||||||||||||||+||+|||++||+||||||||||+|+.++|+++|+++|+|||++||+ ++|||+||+.|
T Consensus        10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y   89 (472)
T COG0008          10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY   89 (472)
T ss_pred             eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 89999999999


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhccC------C-CC-CCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKGFN------P-LP-SPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---  467 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~~~------~-~~-~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---  467 (832)
                      |++|.+||++|+||+|+||+|||++++      + .| +.+|+   +++|..|+.|..... ++++++|+|+|+.+.   
T Consensus        90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~-~~~~viR~k~~~~~~~~~  165 (472)
T COG0008          90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE-GGPAVVRLKIPMAHPGPV  165 (472)
T ss_pred             HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc-CCCeEEEEeCCCCCCCCc
Confidence            999999999999999999997776542      1 23 55554   678999999988322 678999999996532   


Q ss_pred             CCCceEEEeeeCC-CCC-CCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCC
Q psy17575        468 KQDPVAYRIKFLP-HHR-TGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNV  545 (832)
Q Consensus       468 ~~D~V~~Ri~~~~-h~r-~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l  545 (832)
                      +.|+|.|||.+.+ |++ ++.+|.+|||||||||||||+|||||||||+||++|||+|.||+++|||+.|.++||+++..
T Consensus       166 ~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~  245 (472)
T COG0008         166 FRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLN  245 (472)
T ss_pred             cccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeec
Confidence            5899999999998 988 89999999999999999999999999999999999999999999999999998777766654


Q ss_pred             -CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCce
Q psy17575        546 -NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRV  624 (832)
Q Consensus       546 -~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~  624 (832)
                       +|.|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+....+..+++|+++.|+..++|+
T Consensus       246 ~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~ry  325 (472)
T COG0008         246 EDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPRY  325 (472)
T ss_pred             CCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHHH
Confidence             4569999999766666689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecc--eeEEeCCccccccccCccccCCCCeeeeeecCceE
Q psy17575        625 MVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDR--TIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVL  702 (832)
Q Consensus       625 ~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~--~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~  702 (832)
                      |++ +|+++.+.|.+.........+|+   ++++|.+.+++.+  .+||++.|+....+        +++|+++.+.+++
T Consensus       326 ~~~-~p~e~~~~~l~~~~~~~~~~~~~---~~e~~~~~~~l~~~~~~~i~~~~~~~~~~--------~~~~~~~~l~~~~  393 (472)
T COG0008         326 MRV-DPVEVVIENLKPHLEEEGATLPL---NPEMGERVVPLTKETLIEIERLDFFFFED--------KEEVRLKRLANVI  393 (472)
T ss_pred             HHh-CCHHHHHHhhhhhhhhhcccCCC---CHHHHhhhhhhccchHHHHhHHHHHHhcc--------hHHHHHHhhcchH
Confidence            999 99999999986423344555665   7889999999999  89999999876543        2677887777653


Q ss_pred             EEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEeccCCceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEE-
Q psy17575        703 EVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSI-  781 (832)
Q Consensus       703 ~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~-  781 (832)
                      ....+.....+.+..          ...+..++|||++..        .+|+.+.|            .+++.+...+. 
T Consensus       394 ~~~~l~~~~~~l~~~----------~~~~~~i~~wv~~~~--------~~~~vk~~------------~~~~plr~a~tG  443 (472)
T COG0008         394 VAEVLEKDAEGLITS----------DWTKENIIHWVKAVA--------RLFGVKGP------------KLFPPLRVALTG  443 (472)
T ss_pred             HHHHHHHHHHhhhhc----------cccHHHHHHHHHHHH--------HHhCCCCc------------ccchhhHHHhcC
Confidence            222222222222211          123344999997632        44554444            46777777888 


Q ss_pred             EEeecCccCCCCCC--eEEeEEeeeEEEe
Q psy17575        782 GYADSGFVGVKPYD--RFQFERVGFFTVD  808 (832)
Q Consensus       782 ~~~e~~~~~~~~~~--~~QfeR~Gyf~~D  808 (832)
                      ++++|.+.+..+..  .+||+|+|||++|
T Consensus       444 ~~~~p~l~~~~~~~g~~~q~~Rl~~~~~~  472 (472)
T COG0008         444 GYVEPELADTIELLGKEVQFERLGYALAD  472 (472)
T ss_pred             CccCCCHHHHHHhhchHHHHHHHHHHhhC
Confidence            99999987765544  4999999999875

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase

Probab=100.00  E-value=1.1e-75  Score=609.52  Aligned_cols=238  Identities=65%  Similarity=1.135  Sum_probs=231.6

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQL  398 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~  398 (832)
                      +|||||||||||+|||||+|+||+||++||++||+|+||||||||+|+.++|++.|++||+|||++||++++||+|++.|
T Consensus         1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y   80 (238)
T cd00807           1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL   80 (238)
T ss_pred             CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeee
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKF  478 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~  478 (832)
                      ++++.+|+++|+||+                                                                 
T Consensus        81 ~~~~~~L~~~g~aY~-----------------------------------------------------------------   95 (238)
T cd00807          81 YEYAEQLIKKGKAYV-----------------------------------------------------------------   95 (238)
T ss_pred             HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence            999999999999999                                                                 


Q ss_pred             CCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcccchhHHHHh
Q psy17575        479 LPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKL  558 (832)
Q Consensus       479 ~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~~l  558 (832)
                        |++++++|+++||||||+||||++|||||||||+||+++|++|.||+++||++.|.+|+|+||+.+|+|||||+++++
T Consensus        96 --~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR~~~~~  173 (238)
T cd00807          96 --HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKRKLLQL  173 (238)
T ss_pred             --CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCcCchhc
Confidence              123456788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCc
Q psy17575        559 IEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPR  623 (832)
Q Consensus       559 v~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R  623 (832)
                      |++|.|.||||||++|+.+||++|++||||+|||+.+|||.++..+++++|+++||++||+.++|
T Consensus       174 i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r  238 (238)
T cd00807         174 VDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR  238 (238)
T ss_pred             cccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998

Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.3e-73  Score=636.57  Aligned_cols=286  Identities=21%  Similarity=0.304  Sum_probs=252.3

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHHHHHH
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYE  400 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ye  400 (832)
                      +||||||||||||||||||||+||+|||++||+|||||||||++|+.+++++.|+++|+||||.||++++||+|++.|++
T Consensus         1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~   80 (433)
T PRK12410          1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ   80 (433)
T ss_pred             CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-CCC
Q psy17575        401 WAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-GKQ  469 (832)
Q Consensus       401 ~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~~~  469 (832)
                      +|++|+++|+||+||||++|+++.+          .+++.||+.+.++.+      .    ..+++++|||+|... .+.
T Consensus        81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p~~~~~f~  150 (433)
T PRK12410         81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKPNHTMSFT  150 (433)
T ss_pred             HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcCCCceeee
Confidence            9999999999999999999997542          135778888776541      1    234689999998532 358


Q ss_pred             CceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC
Q psy17575        470 DPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN  544 (832)
Q Consensus       470 D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~  544 (832)
                      |.|.|++.+.++  +.+||+|     +||||||+||||++|||||||||+||++|||+|.+|+++|||..|-  .|+|+|
T Consensus       151 D~v~G~i~~~~~--~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp--~f~Hlp  226 (433)
T PRK12410        151 DAIKGEVSFEPD--EIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEI--TYAHLP  226 (433)
T ss_pred             eccceeEEeccc--cCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCC--eEEEee
Confidence            999999998763  5678987     7999999999999999999999999999999999999999998641  599987


Q ss_pred             C----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCH-HHHHHHHHHhhcc
Q psy17575        545 V----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSP-NMLEAVVREVLND  619 (832)
Q Consensus       545 l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~-~~le~~~r~~l~~  619 (832)
                      +    +|+|||||+++                .+|.+||++||+|+||+||++.+||+..++.++. +++++|..+.+.+
T Consensus       227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli~~F~~~~i~~  290 (433)
T PRK12410        227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAIEWFDIEKISK  290 (433)
T ss_pred             eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHHHhCCHhhCCC
Confidence            5    68999999863                4799999999999999999999999987777876 5567787777776


Q ss_pred             CCCceeEEecCcceEEeecCC
Q psy17575        620 TAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       620 ~a~R~~av~dp~kl~i~N~~~  640 (832)
                      ..    +++|+.||.|.|...
T Consensus       291 ~~----~~~d~~kL~~~N~~~  307 (433)
T PRK12410        291 SP----AKFDLKKLRFINREH  307 (433)
T ss_pred             cc----ccCCHHHHHHHHHHH
Confidence            55    789999999999654

>PLN02627 glutamyl-tRNA synthetase

Probab=100.00  E-value=7.3e-73  Score=642.38  Aligned_cols=296  Identities=22%  Similarity=0.388  Sum_probs=258.6

Q ss_pred             hhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc----
Q psy17575        312 HIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ----  387 (832)
Q Consensus       312 hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~----  387 (832)
                      |.+.+.++|||||||||||+||||||||||+||+|||++||+|||||||||++|+.++|++.|+++|+||||+||+    
T Consensus        38 ~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDegp~~  117 (535)
T PLN02627         38 AGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEGPDV  117 (535)
T ss_pred             cccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcCccc
Confidence            4555678899999999999999999999999999999999999999999999999999999999999999999995    


Q ss_pred             -----ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCccc
Q psy17575        388 -----ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLID  452 (832)
Q Consensus       388 -----~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~  452 (832)
                           +++||+|++.|+++|++|+++|+||+||||++++++.+          .+++.||+++.+++.+.   +     .
T Consensus       118 gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~---~-----~  189 (535)
T PLN02627        118 GGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAE---L-----A  189 (535)
T ss_pred             CCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHH---H-----h
Confidence                 48999999999999999999999999999999997542          13567999998876432   2     2


Q ss_pred             CC-CceEEEEecccCC--CCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHH
Q psy17575        453 EG-EATLRMKITLEEG--KQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYY  524 (832)
Q Consensus       453 ~g-~~~lR~K~~~~~~--~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~  524 (832)
                      .| ++++|||++....  +.|.|.+.+.+...  +.+||+|     +||||||||||||+|||||||||+||++||++|+
T Consensus       190 ~g~~~~iR~k~p~~~~~~~~D~i~G~i~~~~~--~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi  267 (535)
T PLN02627        190 KGTPYTYRFRVPKEGSVKIDDLIRGEVSWNTD--TLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQA  267 (535)
T ss_pred             CCCCceEEEEcCCCCceEEEeeeeeeeeeccc--cCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHH
Confidence            23 4899999986432  47999999887653  4567876     9999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC
Q psy17575        525 WLCNALDIYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA  600 (832)
Q Consensus       525 ~L~~aL~~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~  600 (832)
                      ||+++|||..|   .|+|+|+    +|+|||||++.                .++..||++||.|+||+||++.|||+..
T Consensus       268 ~ly~aLg~~~P---~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~  328 (535)
T PLN02627        268 LIYKALGFPMP---RFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDG  328 (535)
T ss_pred             HHHHHcCCCCC---eEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence            99999999999   5999987    48999999843                3689999999999999999999999865


Q ss_pred             --CcccCH-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        601 --QAVVSP-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       601 --~~~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                        ++.++. ++++.|+-+.+.++.    +++|+.||.|.|..+
T Consensus       329 ~~~e~~~~~eli~~F~l~~v~~s~----~~fD~~KL~wlN~~y  367 (535)
T PLN02627        329 TENEIFTLEELVEKFSIDRINKSG----AVFDSTKLKWMNGQH  367 (535)
T ss_pred             CCCCcCCHHHHHHhCCHhhCCCcc----cccCHHHHHHHHHHH
Confidence              356776 667888888877765    789999999999765

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=5.2e-74  Score=623.44  Aligned_cols=296  Identities=33%  Similarity=0.445  Sum_probs=238.1

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQ  397 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~  397 (832)
                      +|||||||||||+||||||||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.|| .+++||+|++.
T Consensus         1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~   80 (314)
T PF00749_consen    1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI   80 (314)
T ss_dssp             --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred             CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999998 89999999999


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccCC----CCCCCCCCChhHhHHHH-HHHHcCcccCCCceEEEEecccCC--CCC
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNP----LPSPWRERPVEENVKLF-EAMKNGLIDEGEATLRMKITLEEG--KQD  470 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~----~~~~~R~r~~ee~L~~f-~~m~~g~~~~g~~~lR~K~~~~~~--~~D  470 (832)
                      |+++|++|+++|+||+|+||++||++.+.    ..|+++.+..++++.++ ++|.++....+++++|||+|+.+.  +.|
T Consensus        81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D  160 (314)
T PF00749_consen   81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD  160 (314)
T ss_dssp             HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred             HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence            99999999999999999999999987642    35678889999999999 889989888889999999999864  589


Q ss_pred             ceEEEeeeCC---CCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC---
Q psy17575        471 PVAYRIKFLP---HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN---  544 (832)
Q Consensus       471 ~V~~Ri~~~~---h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~---  544 (832)
                      +|.|++.+.+   |...+..+.++||||||+||||++|||||||||.||+++|+.|.||+++||+..|   .|.|+|   
T Consensus       161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P---~~~H~pl~l  237 (314)
T PF00749_consen  161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPP---PYAHLPLIL  237 (314)
T ss_dssp             TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS----EEEEEEEEE
T ss_pred             CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCc---ceEeeeeee
Confidence            9999999876   3333333334999999999999999999999999999999999999999999988   477765   


Q ss_pred             -CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC--CcccCH-HHHHHHHHHhhccC
Q psy17575        545 -VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA--QAVVSP-NMLEAVVREVLNDT  620 (832)
Q Consensus       545 -l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~--~~~~~~-~~le~~~r~~l~~~  620 (832)
                       .+|+|||||+++.+|              .+..+|..|++|+++.|||+.+||+..  .+.++. +..++|.-..+.+ 
T Consensus       238 ~~~g~kLSKR~~~~~i--------------~~~~~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~-  302 (314)
T PF00749_consen  238 NEDGKKLSKRKGAKSI--------------ELGDYREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISK-  302 (314)
T ss_dssp             ETTSSBSSTTCSHHBH--------------HHHHHHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHS-
T ss_pred             cCCCcEechhhccccc--------------cccccccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccC-
Confidence             479999999987654              377788888888888888888888843  234443 3334443333333 


Q ss_pred             CCceeEEecCcceEE
Q psy17575        621 APRVMVVIDPLPLHI  635 (832)
Q Consensus       621 a~R~~av~dp~kl~i  635 (832)
                         ..+++|+.||.|
T Consensus       303 ---~~~~fd~~kL~w  314 (314)
T PF00749_consen  303 ---SPAVFDRKKLDW  314 (314)
T ss_dssp             ---SHEEHHHHHHHH
T ss_pred             ---chHHhCHHHhCC
Confidence               336777776643

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=100.00  E-value=2.3e-71  Score=578.83  Aligned_cols=238  Identities=38%  Similarity=0.595  Sum_probs=228.7

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCccc--ccHHHHHHHHHHHHHcCCCcCcccccchhHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK--EEEKFFTGIKDMVQWLGYKPYQITHSSDYFH  396 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r--~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~  396 (832)
                      +|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|  +.+++++.|++||+|||+.||++++||+|++
T Consensus         1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~   80 (240)
T cd09287           1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE   80 (240)
T ss_pred             CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence            48999999999999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEe
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI  476 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri  476 (832)
                      .|++++++|+++|+||+                                                               
T Consensus        81 ~y~~~~~~Li~~G~aY~---------------------------------------------------------------   97 (240)
T cd09287          81 LYYEYARKLIEMGGAYV---------------------------------------------------------------   97 (240)
T ss_pred             HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence            99999999999999998                                                               


Q ss_pred             eeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCCcccchhHHH
Q psy17575        477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIA  556 (832)
Q Consensus       477 ~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~gtkLSKRk~~  556 (832)
                          |++.+++|+++|||||||||||++|||||||||+||+++|++|.||+++||+..|.+++++.++..|+|||||+++
T Consensus        98 ----~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLSKR~~~  173 (240)
T cd09287          98 ----HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLSTSKIR  173 (240)
T ss_pred             ----CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeecccccc
Confidence                1234568999999999999999999999999999999999999999999999999877777776789999999999


Q ss_pred             HhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCc
Q psy17575        557 KLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPR  623 (832)
Q Consensus       557 ~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R  623 (832)
                      ++|++|.|.||||||++|+++||++|++|+||+||+..+|||.+++.+++++|+++||++||+.|+|
T Consensus       174 ~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r  240 (240)
T cd09287         174 KGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR  240 (240)
T ss_pred             ccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>PRK12558 glutamyl-tRNA synthetase; Provisional

Probab=100.00  E-value=9.7e-71  Score=617.87  Aligned_cols=289  Identities=25%  Similarity=0.333  Sum_probs=252.4

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhHHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQL  398 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~  398 (832)
                      +||||||||||||||||||||||+||+|||++||+|||||||||++|+.+++.+.|+++|+|||+.||+.++||++++.|
T Consensus         2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y   81 (445)
T PRK12558          2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY   81 (445)
T ss_pred             ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCC-CceEEEEecccC-
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEG-EATLRMKITLEE-  466 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~lR~K~~~~~-  466 (832)
                      ++++++|+++|+||+||||+||+++.+          .+++.||+.+.++..        .+..+| ++++|||++... 
T Consensus        82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~--------~~~~~g~~~~iR~k~~~~~~  153 (445)
T PRK12558         82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKA--------ALEAEGRKPHWRFKLDDEPI  153 (445)
T ss_pred             HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHH--------hHHhcCCCceEEEecCCCce
Confidence            999999999999999999999997532          134567877766542        223334 489999995432 


Q ss_pred             CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccc
Q psy17575        467 GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG  541 (832)
Q Consensus       467 ~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~  541 (832)
                      .+.|.|.|.+.+.+.  +.+||+|     +|||||||||||++|||||||||+||++|||+|+||+++|||..|   +|+
T Consensus       154 ~~~D~i~G~~~~~~~--~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P---~f~  228 (445)
T PRK12558        154 SWDDLIRGEQSIDAA--SLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPP---VFA  228 (445)
T ss_pred             EEEEEeeeEeecccc--cCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCC---eEE
Confidence            247889998877653  3467876     999999999999999999999999999999999999999999999   699


Q ss_pred             ccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCc-ccCH-HHHHHHHHH
Q psy17575        542 RLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQA-VVSP-NMLEAVVRE  615 (832)
Q Consensus       542 hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~-~~~~-~~le~~~r~  615 (832)
                      |+|+    +|+|||||++.                .+|.+||++||+||||+||++.|||+..+. .+++ ++++.|.-+
T Consensus       229 H~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~~F~l~  292 (445)
T PRK12558        229 HLSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAESFDLS  292 (445)
T ss_pred             EcccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHHhCCHh
Confidence            9987    57899999842                489999999999999999999999997654 4576 667889888


Q ss_pred             hhccCCCceeEEecCcceEEeecCC
Q psy17575        616 VLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       616 ~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      .+++++    +++|+.||.|.|..+
T Consensus       293 ~~~~~~----~~fd~~KL~w~N~~~  313 (445)
T PRK12558        293 SFSRAP----AKFDPEDLERLNARL  313 (445)
T ss_pred             hCCCcc----ccCCHHHHHHHHHHH
Confidence            888766    789999999999765

>KOG1149|consensus

Probab=100.00  E-value=8.4e-70  Score=588.55  Aligned_cols=291  Identities=22%  Similarity=0.343  Sum_probs=255.6

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------c
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------I  388 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~  388 (832)
                      ..|||||||||||+||+|++||||+||+|||++||+|||||||||++|..+++.+.|.++|+|+||.||+         +
T Consensus        32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP  111 (524)
T KOG1149|consen   32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP  111 (524)
T ss_pred             ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence            4599999999999999999999999999999999999999999999999999999999999999999994         4


Q ss_pred             cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC-------C---CCCCCCCCChhHhHHHHHHHHcCcccCC-Cce
Q psy17575        389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN-------P---LPSPWRERPVEENVKLFEAMKNGLIDEG-EAT  457 (832)
Q Consensus       389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~-------~---~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~  457 (832)
                      |.||+|.++|.++|+.|++.|+||+||||++++..++       .   +...||+.+.+|.        ..+.+.| +++
T Consensus       112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei--------~~~lakg~pf~  183 (524)
T KOG1149|consen  112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEI--------KQKLAKGTPFT  183 (524)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHH--------HHHHhcCCCee
Confidence            8999999999999999999999999999999886542       1   2346888776653        2234456 489


Q ss_pred             EEEEecccC-CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575        458 LRMKITLEE-GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD  531 (832)
Q Consensus       458 lR~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~  531 (832)
                      +|||++... .+.|+|.|.+......+.| |++|     +||||||+|||||+|||||||||.||++||.+|..||+|+|
T Consensus       184 iRFrl~~~~~~f~DLvyG~v~~~~d~~~g-D~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfg  262 (524)
T KOG1149|consen  184 IRFRLPKESPPFTDLVYGKVNHNVDSNEG-DPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFG  262 (524)
T ss_pred             EEEecCCCCCChhhhhhhhhhccccccCC-CcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHhC
Confidence            999999854 5789999998777665544 5665     99999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccC
Q psy17575        532 IYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVS  605 (832)
Q Consensus       532 ~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~  605 (832)
                      |.+|   .|+|||+    +|+|||||++..                .+..||++||.||||.|||+.+||+..+  ..++
T Consensus       263 W~pP---kFaHlpLl~n~d~sKLSKRqgD~----------------~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~s  323 (524)
T KOG1149|consen  263 WQPP---KFAHLPLLLNPDGSKLSKRQGDA----------------SVSHYREQGYLPEALLNYIALLGWGFRTENEFFS  323 (524)
T ss_pred             CCCC---ceeeeeeeecCCcchhhhhcCcc----------------hHHHHHHcCCChHHHHHHHHHcCCCccccccccc
Confidence            9999   6999987    699999999642                6889999999999999999999999653  4567


Q ss_pred             H-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        606 P-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       606 ~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      + ++++.|+.+.+++..    +++|+.||.+.|..+
T Consensus       324 l~eLieqF~i~~ltk~~----a~ld~ekL~~~Nr~~  355 (524)
T KOG1149|consen  324 LEELIEQFSIERLTKSN----AILDSEKLRFLNRLH  355 (524)
T ss_pred             HHHHHHHhchhhhcccc----cccCHHHHHHHHHHH
Confidence            6 667889999988877    889999999999655

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed

Probab=100.00  E-value=8.4e-68  Score=568.43  Aligned_cols=267  Identities=21%  Similarity=0.232  Sum_probs=225.3

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYF  395 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~  395 (832)
                      ..+|||||||||||+|||||+|+||+||++||++||+|||||||||++|+.++|++.|+++|+||||.|| .+++||+|+
T Consensus         3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~   82 (299)
T PRK05710          3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH   82 (299)
T ss_pred             CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence            3569999999999999999999999999999999999999999999999999999999999999999999 489999999


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhccC--------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-  466 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-  466 (832)
                      +.|++++++|+++|+||+|+||++||++.+        .++++||+++.+++              .+++||||+|... 
T Consensus        83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~~~~~  148 (299)
T PRK05710         83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVPDAVI  148 (299)
T ss_pred             HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcCCCce
Confidence            999999999999999999999999997543        24678898776542              1689999998221 


Q ss_pred             CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccc
Q psy17575        467 GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG  541 (832)
Q Consensus       467 ~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~  541 (832)
                      .+.|.+.+.+.+.+.. ..+||+|     +|||||||||||++|||||||||+||+++|++|.||+++||+..|   +|+
T Consensus       149 ~~~D~~~G~~~~~~~~-~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P---~y~  224 (299)
T PRK05710        149 AFDDRLQGRQHQDLAL-AVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTP---RYL  224 (299)
T ss_pred             EEEEecceeEeeCCCC-CCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCC---eEE
Confidence            2467777777655542 3456775     899999999999999999999999999999999999999999999   588


Q ss_pred             ccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccC---HHHHHHH
Q psy17575        542 RLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVS---PNMLEAV  612 (832)
Q Consensus       542 hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~---~~~le~~  612 (832)
                      |+|+    +|+|||||+++..                |..   .|+.|+ |.||++.|||+...  ..++   .+.+++|
T Consensus       225 H~pll~~~~g~kLSKr~~~~~----------------i~~---~g~~p~-l~~~l~~lG~~~~~~~~~~~~~~~~~i~~f  284 (299)
T PRK05710        225 HLPLVLNADGQKLSKQNGAPA----------------LDA---AGPLPV-LAAALRFLGQPPPAADASVEELLAQAVAHW  284 (299)
T ss_pred             EeecccCCCCCcccccCCccc----------------hhh---cCcCHH-HHHHHHHcCCCCCccccccccCHHHHHHhC
Confidence            8764    6899999997543                333   799999 99999999998753  2222   2556666


Q ss_pred             HHHhhccCC
Q psy17575        613 VREVLNDTA  621 (832)
Q Consensus       613 ~r~~l~~~a  621 (832)
                      ....+....
T Consensus       285 ~~~~~~~~~  293 (299)
T PRK05710        285 DLTRLPRQA  293 (299)
T ss_pred             CHhhCCcCC
Confidence            555554443

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase

Probab=100.00  E-value=6.1e-68  Score=563.60  Aligned_cols=251  Identities=21%  Similarity=0.232  Sum_probs=215.9

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQL  398 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~~  398 (832)
                      ++|||||||||+|||||||+||+||++||++||+|||||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus         1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y   80 (272)
T TIGR03838         1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY   80 (272)
T ss_pred             CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999996 57999999999


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhccC---C--CCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-CCCCce
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKGFN---P--LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-GKQDPV  472 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~~~---~--~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~~~D~V  472 (832)
                      +++|++|+++|+||+||||++||++.+   .  .++.||+ +.            ....+++++||||++... .+.|.+
T Consensus        81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~------------~~~~~~~~~~Rlk~~~~~~~~~D~~  147 (272)
T TIGR03838        81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GL------------LGRPARPAAWRLRVPDGVIAFDDRL  147 (272)
T ss_pred             HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-cc------------ccccCCCceEEEecCCCCceEEEee
Confidence            999999999999999999999998662   1  2345776 21            012345689999998643 357999


Q ss_pred             EEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC---
Q psy17575        473 AYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN---  544 (832)
Q Consensus       473 ~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~---  544 (832)
                      .+++.+. |+...++|+|     +|||||||||||++|||||||||+||+++|++|.||+++||+..|   .|+|+|   
T Consensus       148 ~g~~~~~-~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P---~y~H~pll~  223 (272)
T TIGR03838       148 QGPQQQD-LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPP---RYLHLPLVV  223 (272)
T ss_pred             eeEEEec-CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCC---eEEechhhh
Confidence            9999865 3456678999     999999999999999999999999999999999999999999999   588865   


Q ss_pred             -CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC--CcccCHH
Q psy17575        545 -VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA--QAVVSPN  607 (832)
Q Consensus       545 -l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~--~~~~~~~  607 (832)
                       .+|+|||||+++.+|+++                    -+++++.+|++.+||+..  .+.++++
T Consensus       224 ~~~g~kLSKR~~~~~i~~~--------------------~~~~~~~~~l~~lG~~~~~~~~~~~~~  269 (272)
T TIGR03838       224 NADGEKLSKQNGAPALDLS--------------------HPLPALLAALRFLGLPPPPELAAASPA  269 (272)
T ss_pred             CCCCCeeeccCCccchhcC--------------------CcHHHHHHHHHHcCCCCCcccccCCHH
Confidence             479999999987665432                    246789999999999865  2455554

This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional

Probab=100.00  E-value=8.8e-68  Score=600.02  Aligned_cols=288  Identities=23%  Similarity=0.360  Sum_probs=250.6

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYF  395 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~  395 (832)
                      +.+|||||||||||+||||||||||+||+|||++||+|+|||||||++|+.++++++|+++|+||||.|| .+++||+|+
T Consensus         2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~   81 (513)
T PRK14895          2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN   81 (513)
T ss_pred             CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999 689999999


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEeccc
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLE  465 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~  465 (832)
                      +.|+++|++|+++|+||+||||++++++.+          .+++.||+.+.++.           ...+++++|||+|..
T Consensus        82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-----------~~~~~~~iR~k~p~~  150 (513)
T PRK14895         82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-----------PTDIKPVIRLKTPRE  150 (513)
T ss_pred             HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-----------hcCCCeeEEEEcCCC
Confidence            999999999999999999999999997542          13456777664421           123568999999865


Q ss_pred             C--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcc
Q psy17575        466 E--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQW  538 (832)
Q Consensus       466 ~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~  538 (832)
                      .  .+.|.|.|.+.+...  +.++++|     .|||+||++|||++|||||||||.||.+++++|.+++++||+..|   
T Consensus       151 ~~~~~~D~v~G~~~~~~~--~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p---  225 (513)
T PRK14895        151 GSITIHDTLQGEVVIENS--HIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVP---  225 (513)
T ss_pred             CceEEEeecccceecccc--cCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCC---
Confidence            3  247888888877653  2356776     799999999999999999999999999999999999999999988   


Q ss_pred             cccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH-HHHHHH
Q psy17575        539 EYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP-NMLEAV  612 (832)
Q Consensus       539 ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~-~~le~~  612 (832)
                      .|.|+|+    +|.|||||+++                .+|..||++||.|+||+||++.|||+..+ +.+++ ++++.|
T Consensus       226 ~~~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~~F  289 (513)
T PRK14895        226 SMTHIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAIDWF  289 (513)
T ss_pred             eEEEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHhhC
Confidence            5778654    68999999964                26899999999999999999999999764 56776 567888


Q ss_pred             HHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        613 VREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       613 ~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      .-+.++++.    ++||+.||.|.|..+
T Consensus       290 ~~~~v~~s~----~~FD~~KL~wlN~~y  313 (513)
T PRK14895        290 NLDSLGKSP----SKLDFAKMNSLNAHY  313 (513)
T ss_pred             CHHhCcCCc----CcCCHHHHHHHHHHH
Confidence            888887765    789999999999765

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.4e-67  Score=600.38  Aligned_cols=292  Identities=27%  Similarity=0.382  Sum_probs=249.5

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcc--------
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQI--------  388 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~--------  388 (832)
                      .++|||||||||||||||||+||||+||+|||++||+|||||||||++|+.++|+++|+++|+||||.||+.        
T Consensus         2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp   81 (476)
T PRK01406          2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP   81 (476)
T ss_pred             CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence            457999999999999999999999999999999999999999999999999999999999999999999964        


Q ss_pred             cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575        389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATL  458 (832)
Q Consensus       389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l  458 (832)
                      ++||+|++.|+++|++|+++|+||+||||+|||++.+          .+++.||+++.++..+   .+.+|    .++++
T Consensus        82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g----~~~~i  154 (476)
T PRK01406         82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAG----EPPVI  154 (476)
T ss_pred             eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCC----CCeeE
Confidence            9999999999999999999999999999999997542          1457899998876532   23333    25899


Q ss_pred             EEEecccC--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575        459 RMKITLEE--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD  531 (832)
Q Consensus       459 R~K~~~~~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~  531 (832)
                      |||+|...  .+.|.|.|++.+...  ..++++|     +|||+||+|||||+|+|||||||.||++++++|.+++++||
T Consensus       155 R~k~p~~~~~~~~D~i~G~~~~~~~--~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG  232 (476)
T PRK01406        155 RFKVPDEGEVVFDDLVRGEIEFPNS--ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG  232 (476)
T ss_pred             EEEcCCCCceEEEEeccceEEeccc--cCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC
Confidence            99998653  247999999887654  2356766     99999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccC----CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH
Q psy17575        532 IYCPVQWEYGRLN----VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP  606 (832)
Q Consensus       532 ~~~P~~~ef~hL~----l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~  606 (832)
                      +..|   .|+|+|    .+|.|||||++.                .+|.+||++||.|+||.||++.+||+... ..++.
T Consensus       233 ~~~p---~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~~e~~~~  293 (476)
T PRK01406        233 WEVP---VFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGDQEIFSL  293 (476)
T ss_pred             CCCC---eEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCccccCCH
Confidence            9988   588865    468999999852                38999999999999999999999999654 34443


Q ss_pred             -HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        607 -NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       607 -~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                       ++++.|+.+.+.    +..+++|+.||.|.|...
T Consensus       294 ~~~i~~f~l~~~~----~s~~~fd~~kL~~~N~~~  324 (476)
T PRK01406        294 EELIELFDLERVS----KSPARFDIKKLDWLNGHY  324 (476)
T ss_pred             HHHHHhcChhhCC----CCCccccHHHHHHHHHHH
Confidence             445555555544    445889999999999765

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family

Probab=100.00  E-value=3e-66  Score=588.94  Aligned_cols=290  Identities=26%  Similarity=0.362  Sum_probs=248.8

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQ  397 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~  397 (832)
                      +||||||||||||||||||||||+||+|||++||+|+|||||||++|+.++|+++|+++|+||||+|| .+++||+|++.
T Consensus         1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~   80 (470)
T TIGR00464         1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI   80 (470)
T ss_pred             CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999 78999999999


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-  466 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-  466 (832)
                      |+++|.+|+++|+||+||||++++++.+          .+++.||+++.+++...+       ...+++++|||+|... 
T Consensus        81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~-------~~g~~~~iR~k~~~~~~  153 (470)
T TIGR00464        81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKL-------AKGIPPVVRFKIPQEAV  153 (470)
T ss_pred             HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHH-------hcCCCceEEEEcCCCCc
Confidence            9999999999999999999999997542          246789999887754322       1235689999999754 


Q ss_pred             -CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccc
Q psy17575        467 -GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY  540 (832)
Q Consensus       467 -~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef  540 (832)
                       .+.|.|.|++.+.++  ..++++|     +|||+||++|||++|||||||||.||.+++++|.+++++||+..|   .|
T Consensus       154 ~~~~D~~~G~~~~~~~--~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p---~~  228 (470)
T TIGR00464       154 VSFNDQVRGEITFQNS--ELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIP---VF  228 (470)
T ss_pred             eeEEecccceEEecCc--cCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCC---eE
Confidence             357999999988764  3457776     899999999999999999999999999999999999999999888   58


Q ss_pred             cccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHHHH
Q psy17575        541 GRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEAVV  613 (832)
Q Consensus       541 ~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~~~  613 (832)
                      .|+|+    +|+|||||++                ..+|..||++||.|+||.||++.+||+...  ..++. ++++.|.
T Consensus       229 ~H~p~l~~~~g~kLSKR~g----------------~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~  292 (470)
T TIGR00464       229 AHLPMILDEDGKKLSKRDG----------------ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFS  292 (470)
T ss_pred             EEEeeeecCCCccccccCC----------------CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcC
Confidence            88755    6899999984                248999999999999999999999998753  34444 3444444


Q ss_pred             HHhhccCCCceeEEecCcceEEeecCC
Q psy17575        614 REVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       614 r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      -+.+    ++.-+++|..||.|.|..+
T Consensus       293 l~~~----~~~~~~fd~~kL~~~N~~~  315 (470)
T TIGR00464       293 LNRV----SKSPAKFDWKKLQWLNAHY  315 (470)
T ss_pred             cccC----CCCCCeecHHHHHHHHHHH
Confidence            3333    3444789999999999765

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase

Probab=100.00  E-value=9e-61  Score=497.20  Aligned_cols=220  Identities=35%  Similarity=0.544  Sum_probs=192.0

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQ  397 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~  397 (832)
                      +|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|++||+|||+.||+ +++||+|++.
T Consensus         1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~   80 (230)
T cd00418           1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL   80 (230)
T ss_pred             CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence            489999999999999999999999999999999999999999999999999999999999999999997 9999999999


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEee
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIK  477 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~  477 (832)
                      |+++|++|+++|                                                                    
T Consensus        81 y~~~~~~L~~~g--------------------------------------------------------------------   92 (230)
T cd00418          81 YRAYAEELIKKG--------------------------------------------------------------------   92 (230)
T ss_pred             HHHHHHHHHHcC--------------------------------------------------------------------
Confidence            999999999999                                                                    


Q ss_pred             eCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC-CCCcccchhHHH
Q psy17575        478 FLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN-VNYTVVSKRKIA  556 (832)
Q Consensus       478 ~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~-l~gtkLSKRk~~  556 (832)
                                  ++|||||||||||++|||||||||.||+++|++|.||+++||++.|.++++..+. .+|+|||||+++
T Consensus        93 ------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLSKr~~~  160 (230)
T cd00418          93 ------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLSKRKLN  160 (230)
T ss_pred             ------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCccCcCCC
Confidence                        2899999999999999999999999999999999999999999999644444442 257999999853


Q ss_pred             HhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHHHHHHhhccCCCceeEEecCcce
Q psy17575        557 KLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEAVVREVLNDTAPRVMVVIDPLPL  633 (832)
Q Consensus       557 ~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl  633 (832)
                                      +||+++|++|++|+||++|++.+||+...  +.+++ +++++|....+....    +++|+.||
T Consensus       161 ----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~f~~~~~~~~~----~~~d~~kL  220 (230)
T cd00418         161 ----------------TTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAAFSVERVNSAD----ATFDWAKL  220 (230)
T ss_pred             ----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHhcCHhhCCCCC----cccCHHHH
Confidence                            48999999999999999999999998742  34443 445555555544433    56677777


Q ss_pred             EEeec
Q psy17575        634 HIVNF  638 (832)
Q Consensus       634 ~i~N~  638 (832)
                      .+.|.
T Consensus       221 ~~~N~  225 (230)
T cd00418         221 EWLNR  225 (230)
T ss_pred             HHHHH
Confidence            66664

Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase

Probab=100.00  E-value=2.6e-56  Score=466.77  Aligned_cols=221  Identities=29%  Similarity=0.435  Sum_probs=197.8

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------cc
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------IT  389 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~~  389 (832)
                      +|+|||||||||+|||||+++||+||++||++||+|+|||||||++|+.+++++.|+++|+|||++||+         ++
T Consensus         1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~   80 (239)
T cd00808           1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY   80 (239)
T ss_pred             CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence            489999999999999999999999999999999999999999999999999999999999999999998         89


Q ss_pred             ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCC
Q psy17575        390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ  469 (832)
Q Consensus       390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~  469 (832)
                      +||+|++.|++++++|+++|                                                            
T Consensus        81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------  100 (239)
T cd00808          81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------  100 (239)
T ss_pred             eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence            99999999999999999988                                                            


Q ss_pred             CceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccccc-CCCCc
Q psy17575        470 DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-NVNYT  548 (832)
Q Consensus       470 D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-~l~gt  548 (832)
                                    +|     +|||+||+||||++|||||||||.||+.++++|.|++++||++.|.++++..+ +.+|.
T Consensus       101 --------------dg-----~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~~~~g~  161 (239)
T cd00808         101 --------------DG-----FPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLILNPDGK  161 (239)
T ss_pred             --------------CC-----CcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeeccccCCCCC
Confidence                          12     89999999999999999999999999999999999999999999965544443 55789


Q ss_pred             ccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCHH-HHHHHHHHhhccCCCcee
Q psy17575        549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSPN-MLEAVVREVLNDTAPRVM  625 (832)
Q Consensus       549 kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~~-~le~~~r~~l~~~a~R~~  625 (832)
                      |||||+++                +||++||++|++|+||++|++.+||+..+  ..++.+ +++.|+-+.+..    ..
T Consensus       162 KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~f~~~~~~~----~~  221 (239)
T cd00808         162 KLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIELFDLERVSK----SP  221 (239)
T ss_pred             cccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhcCCHhhCCc----Cc
Confidence            99999964                48999999999999999999999998765  455654 667777666654    44


Q ss_pred             EEecCcceEEeec
Q psy17575        626 VVIDPLPLHIVNF  638 (832)
Q Consensus       626 av~dp~kl~i~N~  638 (832)
                      +++|+.||.+.|.
T Consensus       222 ~~~d~~kL~~~n~  234 (239)
T cd00808         222 AIFDPEKLDWLNG  234 (239)
T ss_pred             CcCCHHHHHHHHH
Confidence            7789999877763

Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=6e-49  Score=389.91  Aligned_cols=160  Identities=50%  Similarity=0.804  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575         62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL  141 (832)
Q Consensus        62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl  141 (832)
                      ++++++||++|||+|+||+||+||++++++|.++|++|+. ..+||+++|+|||+|||+++++..+||++|++||++|+|
T Consensus         3 ~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~-~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gkl   81 (164)
T PF04558_consen    3 EEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGV-DSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGKL   81 (164)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-T-T----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS-
T ss_pred             hHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCCC
Confidence            7899999999999999999999999999999999999987 578999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHhCCC-ccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhHHHHHhhCCCC
Q psy17575        142 DSTLRVDAALEYVLSHVN-AVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYR-YNLGLVMQEVRTLLKWA  219 (832)
Q Consensus       142 kt~~Ql~aAlkyl~~~~~-~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~-~n~g~ll~~vR~~LkWA  219 (832)
                      +|++||+||++|+++++. ++|.++||++|||||+||+|||+++|++||++|+++|+++||+ ||+|.+++++|..||||
T Consensus        82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkWA  161 (164)
T PF04558_consen   82 KTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKWA  161 (164)
T ss_dssp             -SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTTS
T ss_pred             CCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCCC
Confidence            999999999999999987 5999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             Chh
Q psy17575        220 DGK  222 (832)
Q Consensus       220 d~k  222 (832)
                      ||+
T Consensus       162 d~k  164 (164)
T PF04558_consen  162 DGK  164 (164)
T ss_dssp             -T-
T ss_pred             CCC
Confidence            996

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.

>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=2.1e-43  Score=354.42  Aligned_cols=169  Identities=42%  Similarity=0.773  Sum_probs=139.2

Q ss_pred             CCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCc
Q psy17575        621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGL  700 (832)
Q Consensus       621 a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~  700 (832)
                      |||+|||.||++|+|+|+|+ +..+++++|+||+++++|+|+++|+++||||++|        |+||+||++|+||+|||
T Consensus         1 A~R~maV~dPv~v~I~n~~~-~~~~~~~~p~hPk~~~~G~r~v~~~~~i~Ie~~D--------~~~l~~g~~v~L~~~~n   71 (174)
T PF03950_consen    1 APRYMAVLDPVKVKITNFPE-DEPEEIEVPLHPKNPELGTREVPFSKTIYIERSD--------FFRLAPGKEVRLMYWGN   71 (174)
T ss_dssp             SEEE-EECSEEEEEECT--S-SSEEEEEEESSTT-GGG-EEEEEECSEEEEEGGG----------SEETTCEEEETTTEE
T ss_pred             CCcEEEECCCEEEEEEcCCC-CCEEEEEecCCCCCccCceEEEEECceEEEEhhH--------hhhccCCCEEEEeccce
Confidence            79999999999999999998 7889999999999999999999999999999999        56899999999999998


Q ss_pred             eEEEeeEeecCCCCEEEEEEEEcCCCC--CCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccCCCCc
Q psy17575        701 VLEVDKVNTKCNGAITSIDVKATPVDV--DNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDS  776 (832)
Q Consensus       701 ~~~~~~~~~~~~g~v~e~~~~~~~~~~--~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S  776 (832)
                      + .|+++.++.+|.|++++|++++.+.  ++|++++|||||+  +++|++|+|++||++++ ++      +++  +||+|
T Consensus        72 i-~i~~~~~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~~~-~~------~~~--inp~s  141 (174)
T PF03950_consen   72 I-KITSIEKDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSAKDSVPVEVRLYDHLFTVDN-DE------DDL--INPNS  141 (174)
T ss_dssp             E-EEEEEEE-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEGCC-EEEEEEEE--SBSSS--GG------TGG--B-TTS
T ss_pred             E-EEEEeeecCCCCEEEEEEEEecccccCCcccCcEEEEccCCCCeeeEEEEehhhcCCCc-cc------cce--ECCCC
Confidence            6 6899999999999999999998642  4688889999995  48999999999999877 43      455  99999


Q ss_pred             eeEE-EEEeecCccCCCCCCeEEeEEeeeEEEe
Q psy17575        777 LKVS-IGYADSGFVGVKPYDRFQFERVGFFTVD  808 (832)
Q Consensus       777 ~~~~-~~~~e~~~~~~~~~~~~QfeR~Gyf~~D  808 (832)
                      +.++ .|++|+++.++++|++|||||+|||+||
T Consensus       142 ~~~~~~~~~E~~~~~~k~g~~vQfER~Gyf~vD  174 (174)
T PF03950_consen  142 LKVVKNGLVEPALKNLKPGDIVQFERRGYFRVD  174 (174)
T ss_dssp             EEEEEEEEE-GGGGGS-TT-EEEETTTEEEEEE
T ss_pred             cEEccCEEEchhHHhCCCCCEEeEEEeeEEEeC
Confidence            9995 6999999999999999999999999998

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=99.65  E-value=1.2e-15  Score=174.89  Aligned_cols=265  Identities=17%  Similarity=0.211  Sum_probs=181.3

Q ss_pred             CCceEEe-eCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc-------------cHHHHHHHHHH
Q psy17575        317 GGKVRTR-FPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------EEKFFTGIKDM  377 (832)
Q Consensus       317 ~~~v~tR-FaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------~~e~~~~I~ed  377 (832)
                      .+.|... .+|+|+|++||||+|+.++...+||.     +...|+..++|+|++-.             ...|.+.+.++
T Consensus        21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~  100 (463)
T PRK00260         21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED  100 (463)
T ss_pred             CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3455555 78999999999999999999888887     78899999999997642             35789999999


Q ss_pred             HHHcCC-CcCcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCC
Q psy17575        378 VQWLGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGE  455 (832)
Q Consensus       378 L~WLGl-~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~  455 (832)
                      +++||+ .|+.....|++.+.+++++++|+++|+||.+.-+.- ++.++..+ +.-..+.       .++|..|.     
T Consensus       101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~y-g~ls~~~-------~~~~~~~~-----  167 (463)
T PRK00260        101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDY-GKLSGRN-------LDELQAGA-----  167 (463)
T ss_pred             HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccccccc-ccCCCCC-------HHHHhccC-----
Confidence            999999 567666778899999999999999999996521110 11222111 1111111       23444441     


Q ss_pred             ceEEEEecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceee-eeecCCCCcceeee--ccccc-ccchhHHHHHHh
Q psy17575        456 ATLRMKITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTH-CLCDSIEHITHSLC--TKEFQ-SRRSSYYWLCNA  529 (832)
Q Consensus       456 ~~lR~K~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~-~VdD~l~gITHvlR--g~E~~-~~~~~~~~L~~a  529 (832)
                         |...+. .....|+++|+-....++.-...| .+.|.+|..| +......|.+--|+  |.|++ ++....+....+
T Consensus       168 ---~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a  244 (463)
T PRK00260        168 ---RVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEA  244 (463)
T ss_pred             ---cCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHH
Confidence               111111 112379999985433232111223 2499999999 55777888877777  89986 566666666556


Q ss_pred             c-CCCCCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHH
Q psy17575        530 L-DIYCPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPN  607 (832)
Q Consensus       530 L-~~~~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~  607 (832)
                      + |.+.+.+| +++++.++|.|||||+++               ..++..+.+. +.|++|+-|++. +-.+++..++++
T Consensus       245 ~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll~-~~~~~~~~fs~~  307 (463)
T PRK00260        245 ATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLLS-AHYRSPLNFSEE  307 (463)
T ss_pred             hcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHHh-CCCCCCCccCHH
Confidence            4 52222244 367888999999999864               2367777774 999999999886 335567778887


Q ss_pred             HHHHHHH
Q psy17575        608 MLEAVVR  614 (832)
Q Consensus       608 ~le~~~r  614 (832)
                      .|+...+
T Consensus       308 ~l~~a~~  314 (463)
T PRK00260        308 ALEQAKK  314 (463)
T ss_pred             HHHHHHH
Confidence            7766544

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=99.64  E-value=1.9e-15  Score=173.27  Aligned_cols=259  Identities=16%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             eeCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC
Q psy17575        323 RFPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       323 RFaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~  384 (832)
                      =-.|+|+|++||||+|+++....++|     .+...|+..+||+|++-.             ...|.+.+.+++++||+.
T Consensus        26 vcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~  105 (465)
T TIGR00435        26 VCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVL  105 (465)
T ss_pred             EecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34699999999999999999988888     788999999999998642             257899999999999998


Q ss_pred             cCc-ccccchhHHHHHHHHHHHHHcCCccccC-CCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEE
Q psy17575        385 PYQ-ITHSSDYFHQLYEWAVKLIKKGLAYVCH-QKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMK  461 (832)
Q Consensus       385 pd~-~~~qSd~~~~~ye~A~~Li~~G~AY~C~-Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K  461 (832)
                      ++. ....|++.+.++++.++|+++|+||.+. -+.- .+..+..+ +....+..       ++|..|.-        ..
T Consensus       106 ~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~y-G~ls~~~~-------~~~~~~~~--------~~  169 (465)
T TIGR00435       106 PPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDY-GKLSKQDL-------DQLEAGAR--------VD  169 (465)
T ss_pred             CCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchh-ccCCCCCH-------HHHhcccc--------cC
Confidence            775 4578899999999999999999999764 1110 11111111 11111221       23444421        11


Q ss_pred             ecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CCCC
Q psy17575        462 ITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DIYC  534 (832)
Q Consensus       462 ~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~~~  534 (832)
                      ++. .....|+++|+.....++.-...| .+.|.+|..|++ .....|.+--|+  |.|++ ++......+..++ |.+.
T Consensus       170 ~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~  249 (465)
T TIGR00435       170 VDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQL  249 (465)
T ss_pred             cccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCC
Confidence            111 112379999986543222111223 259999999885 355556444444  88987 5666666666664 6444


Q ss_pred             CCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        535 PVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       535 P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                      +.+| +++++.++|.|||||+++               ..++..+.+. +.|+|++-|+.... .+++..|+++.|+...
T Consensus       250 ~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~-~~~~l~fs~~~l~~a~  312 (465)
T TIGR00435       250 AKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVH-YRSPLDFSEELLEAAK  312 (465)
T ss_pred             CcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCC-CCCCCccCHHHHHHHH
Confidence            4443 478889999999999964               2378887775 99999999998765 5667788988887765


Q ss_pred             H
Q psy17575        614 R  614 (832)
Q Consensus       614 r  614 (832)
                      +
T Consensus       313 ~  313 (465)
T TIGR00435       313 N  313 (465)
T ss_pred             H
Confidence            4

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6

Probab=99.60  E-value=2.5e-15  Score=162.01  Aligned_cols=256  Identities=16%  Similarity=0.167  Sum_probs=162.5

Q ss_pred             CCCCCCcCchHHHHHHHHH-----HHHHHhcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCc-
Q psy17575        325 PPEPNGILHIGHAKAININ-----FGYAAAHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKP-  385 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n-----~l~Ar~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~p-  385 (832)
                      .|++..+.||||+|++++-     ||-...+.-.++..|.|+|.+--             ...|++.+.+||+.||+.+ 
T Consensus        15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p   94 (300)
T PF01406_consen   15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP   94 (300)
T ss_dssp             EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred             CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            5999999999999999976     44455677799999999996531             3578999999999999986 


Q ss_pred             CcccccchhHHHHHHHHHHHHHcCCccccC-CCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEec
Q psy17575        386 YQITHSSDYFHQLYEWAVKLIKKGLAYVCH-QKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT  463 (832)
Q Consensus       386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~-Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~  463 (832)
                      +.....|++++.+.+++++|+++|+||.-. -+.- ++.++..+ +.-..+..       ++|..|.-.+..       .
T Consensus        95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~Y-G~Ls~~~~-------~~l~~~~~~~~~-------~  159 (300)
T PF01406_consen   95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDY-GKLSNQDL-------EDLEAGARVEVD-------Y  159 (300)
T ss_dssp             SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTT-TTTTT-SH-------HHHHHCHHHTT--------T
T ss_pred             ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecccccc-ccccccch-------hhHHhhhhcccc-------c
Confidence            577899999999999999999999999865 3222 23332211 11111222       334444322111       1


Q ss_pred             ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CCCCCCc
Q psy17575        464 LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DIYCPVQ  537 (832)
Q Consensus       464 ~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~~~P~~  537 (832)
                      ......|+++|+-.....+.=...| .+.|.+|..|++ .....|-+--|.  |.|++ ++.+..+.+++++ |-....+
T Consensus       160 ~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~  239 (300)
T PF01406_consen  160 EKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANY  239 (300)
T ss_dssp             TSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEE
T ss_pred             ccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHH
Confidence            1123479999986532211111112 469999999887 555556555555  89998 8888888899887 5333344


Q ss_pred             cc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575        538 WE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV  612 (832)
Q Consensus       538 ~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~  612 (832)
                      |- -+||.++|.||||+.++               +.||+.+..+ ++|.+|+-||..-. .++...++++.|+..
T Consensus       240 W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~h-Yr~~l~~s~~~l~~A  298 (300)
T PF01406_consen  240 WMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTH-YRKPLNFSEENLEEA  298 (300)
T ss_dssp             EEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS--TTS-EEE-HHHHHHH
T ss_pred             HHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCC-CCCccccCHHHHHHh
Confidence            43 47889999999999865               3589999875 99999999887766 567788999988764

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=5.3e-15  Score=166.69  Aligned_cols=258  Identities=17%  Similarity=0.173  Sum_probs=184.4

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH---hcCC--EEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC-c
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA---AHNG--ICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK-P  385 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar---~~gG--~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~-p  385 (832)
                      .|++..|.||||+|++++--.+.|   ..|+  +|+..|.|+|.+--             .+.|+....+|++.||+. |
T Consensus        29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p  108 (464)
T COG0215          29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP  108 (464)
T ss_pred             CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            599999999999999987644443   3444  89999999997631             357899999999999995 6


Q ss_pred             CcccccchhHHHHHHHHHHHHHcCCcccc-CCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEec
Q psy17575        386 YQITHSSDYFHQLYEWAVKLIKKGLAYVC-HQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT  463 (832)
Q Consensus       386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C-~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~  463 (832)
                      +.....+++.+.+.+++++||++|+||+- .-+.. +..++..+..--+....       +++..|.-.+....      
T Consensus       109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~l-------e~l~~gar~~~~~~------  175 (464)
T COG0215         109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSL-------EELQAGARVEVDEE------  175 (464)
T ss_pred             cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCCh-------hHHhhccccccccc------
Confidence            88889999999999999999999999986 33322 33333211000001111       23333321111110      


Q ss_pred             ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhcCC-CC-CC
Q psy17575        464 LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNALDI-YC-PV  536 (832)
Q Consensus       464 ~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL~~-~~-P~  536 (832)
                       .....|+|+|+-.....|.=..-| .+.|.||.-|++ .+...|-+--|.  |.|++ +++...+..++++.- .+ ..
T Consensus       176 -Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~  254 (464)
T COG0215         176 -KRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAK  254 (464)
T ss_pred             -cCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCccee
Confidence             112379999996544333211223 369999999988 777888888888  89998 899999999998754 22 44


Q ss_pred             ccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        537 QWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       537 ~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                      +|- -++|+++|.||||+.++               +.|++.+.+. +.|++|+-|+.... .+++..++.+.|+...
T Consensus       255 yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~H-YR~pl~fsee~L~~A~  315 (464)
T COG0215         255 YWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSH-YRSPLDFSEELLEEAK  315 (464)
T ss_pred             EeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHH-hCCccccCHHHHHHHH
Confidence            553 57789999999999865               4589998887 99999999998877 6777888888887654

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=99.57  E-value=3.7e-15  Score=154.32  Aligned_cols=176  Identities=18%  Similarity=0.105  Sum_probs=129.6

Q ss_pred             eCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCccc------------ccHHHHHHHHHHHHHcCCCcC
Q psy17575        324 FPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEK------------EEEKFFTGIKDMVQWLGYKPY  386 (832)
Q Consensus       324 FaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r------------~~~e~~~~I~edL~WLGl~pd  386 (832)
                      .+|+|||+|||||+|++++-..+||     .+.-.+.-=++|.+.+-            -...+.+.+.+++++||+.+|
T Consensus         7 ~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~d   86 (212)
T cd00671           7 VSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRFD   86 (212)
T ss_pred             cCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCc
Confidence            4799999999999999887655554     34445555566776542            234677889999999999998


Q ss_pred             cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC
Q psy17575        387 QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE  466 (832)
Q Consensus       387 ~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~  466 (832)
                      .....|++.....+..++|+++|.+|.-.                                      |..++++  +...
T Consensus        87 ~~~~es~~~~~~~~~i~~L~~~g~~~~~~--------------------------------------g~~~~~~--~~~~  126 (212)
T cd00671          87 VWFGESSYLGLMGKVVELLEELGLLYEED--------------------------------------GALWLDL--TEFG  126 (212)
T ss_pred             eecchhhhhhHHHHHHHHHHHCCCEEEeC--------------------------------------CcEEEec--hhhC
Confidence            77778887777778888999999997311                                      1001000  0000


Q ss_pred             CCCCceEEEeeeCCCCCCCCceeEeeccc---eeeeeecCCCCccee--eecccccccchhHHHHHHhcCCC-CCCcccc
Q psy17575        467 GKQDPVAYRIKFLPHHRTGDSWCIYPTYD---YTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNALDIY-CPVQWEY  540 (832)
Q Consensus       467 ~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~---fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~aL~~~-~P~~~ef  540 (832)
                      ...|+|+-|       ++|     .|||.   +|+.+++..+++||+  |+|.|+..+.+++.+++++||+. .|   .+
T Consensus       127 ~~~d~vl~r-------sdG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~~~~---~~  191 (212)
T cd00671         127 DDKDRVLVR-------SDG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGYDEAK---KL  191 (212)
T ss_pred             CCCCeEEEE-------CCC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCCCCC---Ce
Confidence            124677776       455     57888   799999999999999  99999999999999999999986 34   34


Q ss_pred             ccc-----CCC-CcccchhH
Q psy17575        541 GRL-----NVN-YTVVSKRK  554 (832)
Q Consensus       541 ~hL-----~l~-gtkLSKRk  554 (832)
                      .|+     .+. |.+||||+
T Consensus       192 ~h~~~~~v~~~~~~kmS~R~  211 (212)
T cd00671         192 EHLLYGMVNLPKEGKMSTRA  211 (212)
T ss_pred             EEEEEEeEEcCCCCCCCCCC
Confidence            454     444 88999997

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6

Probab=99.54  E-value=1.5e-15  Score=135.83  Aligned_cols=83  Identities=47%  Similarity=0.640  Sum_probs=16.8

Q ss_pred             hhHHHHHHHHHhhcCCCcccccCCCCccccccccCCC-CCcccccCCccccccchhhhhhccccCCCCCCCCCccCCccc
Q psy17575        223 YIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKP-KSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVV  301 (832)
Q Consensus       223 ~vK~~vD~~~l~lLGPKte~d~~kk~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~~  301 (832)
                      +||++||.||++|||||||+|+++++|++++++++.. ..+....+.+...++..++++|++.++||+|||||+      
T Consensus         1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~fHkPGEN~k------   74 (84)
T PF04557_consen    1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGDLHFHKPGENYK------   74 (84)
T ss_dssp             -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcccCCCCccccCC------
Confidence            5899999999999999999999988776654332211 111111111211334556678886667999999976      


Q ss_pred             ccccHHHHHHh
Q psy17575        302 TEQTHDLLREH  312 (832)
Q Consensus       302 ~~~~~~~~~~h  312 (832)
                       ++|+++|.+|
T Consensus        75 -pqt~~~L~~h   84 (84)
T PF04557_consen   75 -PQTMPLLKKH   84 (84)
T ss_dssp             -----------
T ss_pred             -cchHHHHhcC
Confidence             5778888887

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.

>PLN02946 cysteine-tRNA ligase

Probab=99.49  E-value=6.3e-14  Score=162.69  Aligned_cols=257  Identities=14%  Similarity=0.124  Sum_probs=177.0

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCc-
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKP-  385 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~p-  385 (832)
                      .|++.|+.||||+|++++-..++|     .+.-.|+.-|+|.|.+-.             ...|.+.+.++++.||+.+ 
T Consensus        87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p  166 (557)
T PLN02946         87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP  166 (557)
T ss_pred             CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence            799999999999999998866665     466789999999996631             3578899999999999864 


Q ss_pred             CcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecc
Q psy17575        386 YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITL  464 (832)
Q Consensus       386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~  464 (832)
                      +..+..|++.+.+.+++++|+++|+||.-.-+.- ++.++..+ +.-..+.       .++|..|.        |..++.
T Consensus       167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~Y-G~Ls~~~-------l~~l~~g~--------rv~~~~  230 (557)
T PLN02946        167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEY-GKLSGRK-------LEDNRAGE--------RVAVDS  230 (557)
T ss_pred             CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhh-hhcCCCC-------hhHhhcCC--------CCCccc
Confidence            4567889999999999999999999996321110 11222111 1111111       23444442        111111


Q ss_pred             -cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CCCCCCc
Q psy17575        465 -EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DIYCPVQ  537 (832)
Q Consensus       465 -~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~~~P~~  537 (832)
                       .....|+++|+-....++.=...| .+.|.||..|++ .....|-+--|.  |.|++ +++...+...++. |.....+
T Consensus       231 ~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~y  310 (557)
T PLN02946        231 RKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISY  310 (557)
T ss_pred             ccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCce
Confidence             112379999985432112111123 469999999987 445566666666  88997 7777777777764 4332224


Q ss_pred             c-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575        538 W-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR  614 (832)
Q Consensus       538 ~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r  614 (832)
                      | +++++.++|.|||||.++               ..|+..+.+. |.|++++-|++..+ .+++..|+++.|+...+
T Consensus       311 W~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~h-yr~~l~fs~e~L~~a~~  371 (557)
T PLN02946        311 WIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTH-YRSPINYSDVQLESASE  371 (557)
T ss_pred             eeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccC-CCCCcEecHHHHHHHHH
Confidence            4 468899999999999864               2478888875 99999999998755 56777899888877643

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=99.47  E-value=1.4e-13  Score=153.92  Aligned_cols=264  Identities=14%  Similarity=0.072  Sum_probs=176.6

Q ss_pred             eCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCC-C
Q psy17575        324 FPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGY-K  384 (832)
Q Consensus       324 FaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl-~  384 (832)
                      -.|+|.|++||||+|+++.--.++|     .+.-.|+.-++|.|.+-.             ...|.+.+.++++.||+ .
T Consensus        15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~   94 (384)
T PRK12418         15 CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLP   94 (384)
T ss_pred             cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3599999999999999988766655     345789999999987632             34688899999999997 6


Q ss_pred             cCcccccchhHHHHHHHHHHHHHcCCccccCC----CHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEE
Q psy17575        385 PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ----KSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR  459 (832)
Q Consensus       385 pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~C----s~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR  459 (832)
                      |+..+..|++.+.+.++.++|+++|.||.-.-    +.- ++.++..+ +.-..+..       ++|..|..... ... 
T Consensus        95 ~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~Y-G~ls~~~~-------~~~~~~~~~~~-~~~-  164 (384)
T PRK12418         95 PRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQF-GYESGYDR-------ATMLELFAERG-GDP-  164 (384)
T ss_pred             CCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhc-ccccCCCH-------HHHHhhhcccc-cCc-
Confidence            77778889999999999999999999996432    111 22222111 11111222       23332100000 000 


Q ss_pred             EEecccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC-
Q psy17575        460 MKITLEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI-  532 (832)
Q Consensus       460 ~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~-  532 (832)
                       .-.......|+++||-....++.=...| .+.|.+|..|++ .....|-+--|+  |.|++ ++.+..+....++ |- 
T Consensus       165 -~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~  243 (384)
T PRK12418        165 -DRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGER  243 (384)
T ss_pred             -ccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCC
Confidence             0001113479999996532122111123 469999999887 555666666677  68997 6777777777775 33 


Q ss_pred             CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575        533 YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA  611 (832)
Q Consensus       533 ~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~  611 (832)
                      +.+.+|- -++|.++|.||||+.++               ..++..+.+.|+.|.+++-|+. .+-.+++..++++.|+.
T Consensus       244 ~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~  307 (384)
T PRK12418        244 RFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALL-AGHYRADREWTDAVLAE  307 (384)
T ss_pred             CcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEe-ccCCCCCcccCHHHHHH
Confidence            2233443 35678899999999874               2478888888999999999886 44456678899988877


Q ss_pred             HHH
Q psy17575        612 VVR  614 (832)
Q Consensus       612 ~~r  614 (832)
                      ..+
T Consensus       308 a~~  310 (384)
T PRK12418        308 AEA  310 (384)
T ss_pred             HHH
Confidence            544

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.46  E-value=4.7e-13  Score=153.84  Aligned_cols=254  Identities=13%  Similarity=0.138  Sum_probs=174.9

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCC----------Ccccc-------------cHHHHHHHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDT----------NPEKE-------------EEKFFTGIKD  376 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDT----------Dp~r~-------------~~e~~~~I~e  376 (832)
                      .|+++++.||||+|+++.--.++|     .+.-.|+..|.|+          |++-.             ...|.+.+.+
T Consensus        30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~  109 (490)
T PRK14536         30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR  109 (490)
T ss_pred             CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            599999999999999888766555     4556888899999          66521             2468889999


Q ss_pred             HHHHcCCCc-CcccccchhHHHHHHHHHHHHHcCCcccc-----CCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCc
Q psy17575        377 MVQWLGYKP-YQITHSSDYFHQLYEWAVKLIKKGLAYVC-----HQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGL  450 (832)
Q Consensus       377 dL~WLGl~p-d~~~~qSd~~~~~ye~A~~Li~~G~AY~C-----~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~  450 (832)
                      +++.||+.+ +..+..+++.+.+.+++.+|+++|.||.-     ||.    .++..+ +.-..+.       .++|..|.
T Consensus       110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv----~~~~~Y-G~Ls~~~-------~~~l~~g~  177 (490)
T PRK14536        110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDI----RTFPSY-GSLASAA-------VEDLQAGA  177 (490)
T ss_pred             HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeC----Ccccch-hhhcCCC-------HHHhhcCC
Confidence            999999976 45577899999999999999999999953     332    111110 1111112       23344442


Q ss_pred             ccCCCceEEEEecc-cCCCCCceEEEeeeC-C--CCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccch
Q psy17575        451 IDEGEATLRMKITL-EEGKQDPVAYRIKFL-P--HHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRS  521 (832)
Q Consensus       451 ~~~g~~~lR~K~~~-~~~~~D~V~~Ri~~~-~--h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~  521 (832)
                      .        ...+. .....|+++|+.... +  .+.=...| .+.|.+|..|++ .....|-+-.|.  |.|++ +++.
T Consensus       178 ~--------v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHe  249 (490)
T PRK14536        178 R--------IEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHT  249 (490)
T ss_pred             c--------CCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchh
Confidence            1        11111 112379999975421 1  11001123 359999998887 333345444555  88997 7888


Q ss_pred             hHHHHHHhc-CCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575        522 SYYWLCNAL-DIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG  599 (832)
Q Consensus       522 ~~~~L~~aL-~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~  599 (832)
                      ..+.+.+++ |...+.+|- -++|.++|.|||||.++               ..|++.+.+.|+.|+|++-|+.... .+
T Consensus       250 neiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR~~lls~~-yr  313 (490)
T PRK14536        250 NEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYRFFLLGGH-YR  313 (490)
T ss_pred             hHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHHHHHHhCC-CC
Confidence            888887776 544444543 56788899999999964               3589999999999999999888744 66


Q ss_pred             CCcccCHHHHHHHHH
Q psy17575        600 AQAVVSPNMLEAVVR  614 (832)
Q Consensus       600 ~~~~~~~~~le~~~r  614 (832)
                      ++..|+++.|+...+
T Consensus       314 ~~l~Fs~e~l~~a~~  328 (490)
T PRK14536        314 SQLAFSWEALKTAKA  328 (490)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            778899988877655

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.46  E-value=4.1e-13  Score=153.80  Aligned_cols=253  Identities=17%  Similarity=0.151  Sum_probs=174.0

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCC----------Ccccc-------------cHHHHHHHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDT----------NPEKE-------------EEKFFTGIKD  376 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDT----------Dp~r~-------------~~e~~~~I~e  376 (832)
                      .|++..++||||+|++++-..++|     .+.-.|+..|.|+          |++-.             ...|.+.+.+
T Consensus        28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~  107 (481)
T PRK14534         28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD  107 (481)
T ss_pred             CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            599999999999999988766555     4556899999999          66421             3578889999


Q ss_pred             HHHHcCCCcC-cccccchhHHHHHHHHHHHHHcCCcccc-----CCCHHHHhccCCCCCCCCCCChhHhHHHHHHHH--c
Q psy17575        377 MVQWLGYKPY-QITHSSDYFHQLYEWAVKLIKKGLAYVC-----HQKSDEMKGFNPLPSPWRERPVEENVKLFEAMK--N  448 (832)
Q Consensus       377 dL~WLGl~pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C-----~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~--~  448 (832)
                      +++.||+.++ .....+++.+.+.+++.+|+++|+||.-     ||...    +..+ +.-..+..       ++|.  .
T Consensus       108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~~~Y-G~ls~~~l-------~~l~~~~  175 (481)
T PRK14534        108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----FKSY-GQMAGINL-------NDFKDMS  175 (481)
T ss_pred             HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----ccch-hhhcCCCH-------HHHhhhc
Confidence            9999999866 3445789999999999999999999953     33221    1111 00111211       2332  2


Q ss_pred             CcccCCCceEEEEecc-cCCCCCceEEEeee--CC-CCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-cc
Q psy17575        449 GLIDEGEATLRMKITL-EEGKQDPVAYRIKF--LP-HHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SR  519 (832)
Q Consensus       449 g~~~~g~~~lR~K~~~-~~~~~D~V~~Ri~~--~~-h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~  519 (832)
                      |.        |+.++. .....|+++|+...  .| ++.-...| .++|.+|..|++ .....|-|-.|.  |.|++ ++
T Consensus       176 ~~--------~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPH  247 (481)
T PRK14534        176 VS--------RVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVH  247 (481)
T ss_pred             cC--------cCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCCc
Confidence            21        111111 11237999998542  11 11001123 369999999887 333456555666  88987 77


Q ss_pred             chhHHHHHHhc-CCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCC
Q psy17575        520 RSSYYWLCNAL-DIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGV  597 (832)
Q Consensus       520 ~~~~~~L~~aL-~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~  597 (832)
                      +.....+..++ |...+.+|- -++|.++|.|||||.++               ..|++.|.+.|+.|++++-|+.... 
T Consensus       248 Hene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~alR~~lls~~-  311 (481)
T PRK14534        248 HINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDFRYFCLTAH-  311 (481)
T ss_pred             chhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHHHHHHHhCC-
Confidence            77777777775 555555554 46788899999999864               3589999999999999998865544 


Q ss_pred             CCCCcccCHHHHHHHH
Q psy17575        598 TGAQAVVSPNMLEAVV  613 (832)
Q Consensus       598 s~~~~~~~~~~le~~~  613 (832)
                      .++...|+++.|+++.
T Consensus       312 yr~~l~Fs~e~l~~a~  327 (481)
T PRK14534        312 YRTQLKFTFNNLKACK  327 (481)
T ss_pred             CCCCCCCCHHHHHHHH
Confidence            6778899999998875

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=99.45  E-value=1.8e-13  Score=153.95  Aligned_cols=260  Identities=12%  Similarity=0.045  Sum_probs=178.6

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC-c
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK-P  385 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~-p  385 (832)
                      .|+|.+++||||+|+++.--.++|     .+.-.|+.-|+|.|.+-.             ...|.+.+.++++.||+. |
T Consensus        43 GpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~  122 (411)
T TIGR03447        43 GITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPP  122 (411)
T ss_pred             CCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            599999999999999988867766     456789999999987631             246888999999999976 6


Q ss_pred             CcccccchhHHHHHHHHHHHHHcCCccccCC----CHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEE
Q psy17575        386 YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQ----KSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRM  460 (832)
Q Consensus       386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~C----s~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~  460 (832)
                      +..+..|++.+.+.+++.+|+++|.||.-.-    +.- ++.++..+ +.-..+..       ++|..+....   .  .
T Consensus       123 d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~Y-G~Ls~~~~-------~~~~~~~~~~---~--~  189 (411)
T TIGR03447       123 RDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQF-GYESGYDR-------ATMLELFAER---G--G  189 (411)
T ss_pred             CcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhcc-ccccCCCH-------HHHHhhhccc---c--c
Confidence            7778899999999999999999999996331    000 22222111 11111222       2233210000   0  0


Q ss_pred             Eec--ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC
Q psy17575        461 KIT--LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI  532 (832)
Q Consensus       461 K~~--~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~  532 (832)
                      ..+  ......|+++|+-....++.=...| .+.|.+|..|++ .....|-+--|+  |.|++ ++....+....++ |.
T Consensus       190 ~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~  269 (411)
T TIGR03447       190 DPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGV  269 (411)
T ss_pred             CcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCC
Confidence            011  1112379999985432222111223 469999999887 666778888888  99998 6777777777775 43


Q ss_pred             -CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHH
Q psy17575        533 -YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE  610 (832)
Q Consensus       533 -~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le  610 (832)
                       +-+.+|- -++|.++|.||||+.++               ..++..+.+.|+.|++++-|++ .+-.+++..++.+.|+
T Consensus       270 ~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~  333 (411)
T TIGR03447       270 RRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLL-AGHYRQDRDWTDAVLA  333 (411)
T ss_pred             CCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEe-cCCCCCCCccCHHHHH
Confidence             3344554 47789999999999864               2478899889999999999886 3435667788888887


Q ss_pred             HHH
Q psy17575        611 AVV  613 (832)
Q Consensus       611 ~~~  613 (832)
                      ...
T Consensus       334 ~a~  336 (411)
T TIGR03447       334 EAE  336 (411)
T ss_pred             HHH
Confidence            743

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=99.36  E-value=6.2e-12  Score=147.63  Aligned_cols=253  Identities=15%  Similarity=0.162  Sum_probs=174.6

Q ss_pred             eCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCc
Q psy17575        324 FPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKP  385 (832)
Q Consensus       324 FaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~p  385 (832)
                      -.|++.++.||||+|++++-..++|     .+.-.|+.-|+|.|.+-.             ...|.+.+.++++.||+.+
T Consensus       254 CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~  333 (699)
T PRK14535        254 CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLR  333 (699)
T ss_pred             cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3699999999999999998766665     455789999999997632             2578889999999999976


Q ss_pred             C-cccccchhHHHHHHHHHHHHHcCCccc------cCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575        386 Y-QITHSSDYFHQLYEWAVKLIKKGLAYV------CHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATL  458 (832)
Q Consensus       386 d-~~~~qSd~~~~~ye~A~~Li~~G~AY~------C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l  458 (832)
                      + ..+..|++.+.+.+++.+|+++|.||.      +||..    ++..+ +.-..+.       .++|..|.        
T Consensus       334 p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~----~f~~Y-G~LS~~~-------~~~l~~g~--------  393 (699)
T PRK14535        334 PDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR----EFAAY-GQLSGKS-------LDDLRAGE--------  393 (699)
T ss_pred             CcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc----ccccc-ccccCCC-------hHHhcCCC--------
Confidence            6 456788999999999999999999995      24432    22111 1111111       23444442        


Q ss_pred             EEEecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-C
Q psy17575        459 RMKITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-D  531 (832)
Q Consensus       459 R~K~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~  531 (832)
                      |..++. .....|+++|+-....++-=..-| .+.|.||..|++ .....|-+--|.  |.|++ ++.+..+...+++ |
T Consensus       394 rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g  473 (699)
T PRK14535        394 RVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATG  473 (699)
T ss_pred             ccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhC
Confidence            111111 112379999985432221001113 369999999988 555667666666  88997 7888888888775 4


Q ss_pred             CC----------------CCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHH
Q psy17575        532 IY----------------CPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR  594 (832)
Q Consensus       532 ~~----------------~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~  594 (832)
                      ..                -..+| +-+++.++|.||||+.++               ..|++.+.+. +.|++++-|++.
T Consensus       474 ~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygpdalRl~lLs  537 (699)
T PRK14535        474 HTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDPEVVRFFILR  537 (699)
T ss_pred             CCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCHHHHHHHHHc
Confidence            31                11123 247778899999999864               2478887774 999999999988


Q ss_pred             hCCCCCCcccCHHHHHHHH
Q psy17575        595 MGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       595 lG~s~~~~~~~~~~le~~~  613 (832)
                      .. .+++..++.+.|+...
T Consensus       538 sh-YRspL~fS~e~Le~Ak  555 (699)
T PRK14535        538 AH-YRSPLNYSDAHLDDAK  555 (699)
T ss_pred             CC-CCCCCCcCHHHHHHHH
Confidence            44 6677788888887754

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional

Probab=99.31  E-value=7.1e-12  Score=149.01  Aligned_cols=266  Identities=14%  Similarity=0.161  Sum_probs=171.5

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH------hcCCEEEEeccCCCcccc--------------cHHHHHHHHHHHHHcCCC
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA------AHNGICFLRYDDTNPEKE--------------EEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar------~~gG~~iLRiDDTDp~r~--------------~~e~~~~I~edL~WLGl~  384 (832)
                      .|++.++.||||||+.++.-.++|      .|.-.|+..|+|+|.+-.              ...|.+.+.+|++.||+.
T Consensus        67 GPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~  146 (651)
T PTZ00399         67 GPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVR  146 (651)
T ss_pred             CCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999998766554      344789999999997621              246888999999999997


Q ss_pred             c-CcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEe
Q psy17575        385 P-YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKI  462 (832)
Q Consensus       385 p-d~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~  462 (832)
                      + +.++..|+|.+.+.++..+|+++|.||.-.-+.- ++.++......+...+++ +....+.|..|.   |.  +. ..
T Consensus       147 ~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~-~~~~~~~~~~g~---~~--l~-~~  219 (651)
T PTZ00399        147 PPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPE-SVADEDRIAEGE---GA--LG-KV  219 (651)
T ss_pred             CCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChh-hcCCHHHHhccc---CC--cc-cc
Confidence            6 4677789999999999999999999996432111 222221000001111111 001112233332   10  00 00


Q ss_pred             c-ccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC-CC
Q psy17575        463 T-LEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI-YC  534 (832)
Q Consensus       463 ~-~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~-~~  534 (832)
                      + ......|+++|.+....++.=..-| .+.|.||..|.+ .-.+.|-+--|+  |.|++ +++...+...+|+ |- .-
T Consensus       220 ~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~  299 (651)
T PTZ00399        220 SGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQW  299 (651)
T ss_pred             CcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCC
Confidence            1 1112468888887643332100111 258999996655 444455565666  77876 7778888888886 32 23


Q ss_pred             CCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        535 PVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       535 P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                      +.+|. .+||.+.|.|||||.++               ..|+..+.+. |.|++|+-|++.. -..++..|+++.+....
T Consensus       300 v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~-~~~~dldFS~e~l~~a~  362 (651)
T PTZ00399        300 VNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH-KWDKPMNYSDESMDEAI  362 (651)
T ss_pred             CcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc-CCCCCCccCHHHHHHHH
Confidence            44555 38899999999999864               2377777776 9999999988855 34567788888876654


Q ss_pred             H
Q psy17575        614 R  614 (832)
Q Consensus       614 r  614 (832)
                      .
T Consensus       363 ~  363 (651)
T PTZ00399        363 E  363 (651)
T ss_pred             H
Confidence            3

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=99.30  E-value=3.7e-12  Score=147.86  Aligned_cols=229  Identities=19%  Similarity=0.158  Sum_probs=148.5

Q ss_pred             CCceEEee-CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcc-------------cccHHHHHHHHHH
Q psy17575        317 GGKVRTRF-PPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPE-------------KEEEKFFTGIKDM  377 (832)
Q Consensus       317 ~~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~-------------r~~~e~~~~I~ed  377 (832)
                      +++|+.-| +|+|||+|||||+|++++-..+||-  ..|.-+.|   ++|.+..             ...+.+.+.|.++
T Consensus       110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~  189 (507)
T PRK01611        110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED  189 (507)
T ss_pred             CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788888 8999999999999999998888875  45655555   4888743             3457888999999


Q ss_pred             HHHcCCCcCcccccchhH--HHHHHHHHHHHHcCCcc-ccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCC
Q psy17575        378 VQWLGYKPYQITHSSDYF--HQLYEWAVKLIKKGLAY-VCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEG  454 (832)
Q Consensus       378 L~WLGl~pd~~~~qSd~~--~~~ye~A~~Li~~G~AY-~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g  454 (832)
                      ++|||+.+|...+.|+.+  +.+.+..++|.++|.+| .-                                      +|
T Consensus       190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~--------------------------------------~G  231 (507)
T PRK01611        190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES--------------------------------------DG  231 (507)
T ss_pred             HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee--------------------------------------CC
Confidence            999999998654445433  34566777899999998 20                                      01


Q ss_pred             CceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccc---eeeeeecCCCCccee--eecccccccchhHHHHHHh
Q psy17575        455 EATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYD---YTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNA  529 (832)
Q Consensus       455 ~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~---fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~a  529 (832)
                      ..++++  +.-....|.|+.|       ++|     .|||.   +|....-... .+++  |.|.|+..+.++...+.++
T Consensus       232 a~~~~~--~~~~~~~~~vl~k-------sdG-----~~~Y~t~Dia~~~~k~~~-~d~~i~V~g~~q~~hf~~~~~~~~~  296 (507)
T PRK01611        232 ALWVRL--TEFGDDKDRVLIK-------SDG-----TYTYFTRDIAYHLYKFER-FDRVIYVVGADHHGHFKRLKAALKA  296 (507)
T ss_pred             cEEEEc--hhhCCCCCeEEEE-------CCC-----CccchHHHHHHHHHHHhh-cCEEEEEECCChHHHHHHHHHHHHH
Confidence            111110  0000012566666       344     23443   4433322211 3455  7799999999998999999


Q ss_pred             cCCCCCCcccccccC------CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCH----------------HH
Q psy17575        530 LDIYCPVQWEYGRLN------VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPP----------------EA  587 (832)
Q Consensus       530 L~~~~P~~~ef~hL~------l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~P----------------eA  587 (832)
                      ||+..+..-.+.|.+      -+|.|||||+++.               .++..+.+.++..                .|
T Consensus       297 lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~---------------i~l~dll~~a~g~~~~~~~~~~~a~~vgidA  361 (507)
T PRK01611        297 LGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNV---------------VTLDDLLDEAVGRARELIEEKEIAEAVGIDA  361 (507)
T ss_pred             cCCCcccceEEEEEEEEeeECCCCCcccCCCCce---------------eEHHHHHHHHHHHHHHHHHhhhhhhhhccce
Confidence            997643101144432      2578999999742               3677777765555                66


Q ss_pred             HHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575        588 INKFCARMGVTGAQAVVSPNMLEAVVR  614 (832)
Q Consensus       588 I~nfl~~lG~s~~~~~~~~~~le~~~r  614 (832)
                      |+-|+... -..++..|+|+.+.++..
T Consensus       362 iR~~~L~~-~~~~~~~Fd~~~~~~~~~  387 (507)
T PRK01611        362 VRYFDLSR-SRDKDLDFDLDLALSFEG  387 (507)
T ss_pred             eEehhhhc-CCCCCCccCHHHHHhhcC
Confidence            77655544 245567889988766653

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=99.30  E-value=1e-12  Score=127.65  Aligned_cols=133  Identities=20%  Similarity=0.077  Sum_probs=101.5

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHhc-----CCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccchhH
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAAH-----NGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYF  395 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~~-----gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~  395 (832)
                      ++.++|+|||.+||||+|++++.+.+||..     +..++..+||.+..+..+....         |..|          
T Consensus         1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~---------~~~~----------   61 (143)
T cd00802           1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK---------GENA----------   61 (143)
T ss_pred             CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc---------CCCH----------
Confidence            367899999999999999999998888886     8999999999998766554332         1111          


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEE
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR  475 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~R  475 (832)
                                             +++..              .+.+.|.+..+                           
T Consensus        62 -----------------------~~~~~--------------~~~~~~~~~~~---------------------------   77 (143)
T cd00802          62 -----------------------KAFVE--------------RWIERIKEDVE---------------------------   77 (143)
T ss_pred             -----------------------HHHHH--------------HHHHHHHHHHH---------------------------
Confidence                                   11110              11111211110                           


Q ss_pred             eeeCCCCCCCCceeEeeccceeeeeecCCCCc---ceeeecccccccchhHHHHHHhcCCC-CCCcccccccCCC-Cccc
Q psy17575        476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHI---THSLCTKEFQSRRSSYYWLCNALDIY-CPVQWEYGRLNVN-YTVV  550 (832)
Q Consensus       476 i~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gI---THvlRg~E~~~~~~~~~~L~~aL~~~-~P~~~ef~hL~l~-gtkL  550 (832)
                                        |++.+++++...++   ||+++|.|+..+.+.+.++.++++.. .|....|+++... |.||
T Consensus        78 ------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~Km  139 (143)
T cd00802          78 ------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKM  139 (143)
T ss_pred             ------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcC
Confidence                              88888888888888   99999999999999999999999875 6877789998874 5999


Q ss_pred             chhH
Q psy17575        551 SKRK  554 (832)
Q Consensus       551 SKRk  554 (832)
                      |||+
T Consensus       140 Sks~  143 (143)
T cd00802         140 SKSK  143 (143)
T ss_pred             CCCC
Confidence            9984

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=99.25  E-value=6.4e-11  Score=137.16  Aligned_cols=277  Identities=16%  Similarity=0.057  Sum_probs=156.4

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccc-------------ccHHHHHHHHHHHHHcC
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEK-------------EEEKFFTGIKDMVQWLG  382 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r-------------~~~e~~~~I~edL~WLG  382 (832)
                      +|==+|+|||.+||||+++.+....++|.     +.-.++.-+||.+.+-             -...|.+.|.++|+.||
T Consensus         5 i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~   84 (511)
T PRK11893          5 ITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALN   84 (511)
T ss_pred             EecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34447999999999999999988777765     3456777788886531             23568889999999999


Q ss_pred             CCcCcccccch--hHHHHHHHHHHHHHcCCccc----------c--CCCHHHHhccCCCCCCCCCCChh-----Hh----
Q psy17575        383 YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYV----------C--HQKSDEMKGFNPLPSPWRERPVE-----EN----  439 (832)
Q Consensus       383 l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~----------C--~Cs~eel~~~~~~~~~~R~r~~e-----e~----  439 (832)
                      +.+|..+..++  +.+...+...+|.++|++|.          |  +++..++..-.  +..+|+.+.-     ++    
T Consensus        85 I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~--p~~~~~~~~~~~~~~~~~f~~  162 (511)
T PRK11893         85 ISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDG--YRCPPTGAPVEWVEEESYFFR  162 (511)
T ss_pred             CCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCC--CCCCCCCCcceEEecCeEEEE
Confidence            99886544444  66777788889999999996          3  44445544211  1122322210     00    


Q ss_pred             HHHHHHHHcCcccCCCceE------E-EEecccCCCCCceEEE-eee--CCCCCCC----CceeE-eeccc------eee
Q psy17575        440 VKLFEAMKNGLIDEGEATL------R-MKITLEEGKQDPVAYR-IKF--LPHHRTG----DSWCI-YPTYD------YTH  498 (832)
Q Consensus       440 L~~f~~m~~g~~~~g~~~l------R-~K~~~~~~~~D~V~~R-i~~--~~h~r~g----d~~~i-~PtY~------fA~  498 (832)
                      +..|.+.....+.++...+      + +..-+..+..|+.+.| -..  .|-|-..    +-|.= ...|.      ..+
T Consensus       163 l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~~  242 (511)
T PRK11893        163 LSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDDE  242 (511)
T ss_pred             cHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcccccc
Confidence            1111111111111100000      0 0000011235666666 111  0111000    01310 00011      011


Q ss_pred             eee--cC--CCCcceeeeccccccc-chhHHHHHHhcCCCCCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcch
Q psy17575        499 CLC--DS--IEHITHSLCTKEFQSR-RSSYYWLCNALDIYCPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRL  572 (832)
Q Consensus       499 ~Vd--D~--l~gITHvlRg~E~~~~-~~~~~~L~~aL~~~~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~  572 (832)
                      ...  +.  ....+--+-|.|.+.. ...+..+..+++...|..| ..+++.++|.|||||+++.               
T Consensus       243 ~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~---------------  307 (511)
T PRK11893        243 ELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNV---------------  307 (511)
T ss_pred             ccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcE---------------
Confidence            100  10  0011224458888754 3334466667777777543 3688888999999999642               


Q ss_pred             hhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575        573 FTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE  615 (832)
Q Consensus       573 ~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~  615 (832)
                      .++..+.+. +.+.|++-|++..+....+..|+++.+....+.
T Consensus       308 i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~  349 (511)
T PRK11893        308 IDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRINA  349 (511)
T ss_pred             EcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHH
Confidence            255666555 889999999999877778889999888654443

>TIGR00398 metG methionyl-tRNA synthetase

Probab=99.02  E-value=8.8e-10  Score=128.63  Aligned_cols=94  Identities=22%  Similarity=0.274  Sum_probs=71.3

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WL  381 (832)
                      ++|--+|.|||.|||||+++.+.-..+||.  ..|   .|+.-+||.+.+             .-...+.+.|.+++++|
T Consensus         2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L   81 (530)
T TIGR00398         2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL   81 (530)
T ss_pred             EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            467779999999999999999998888864  334   455556665432             23457889999999999


Q ss_pred             CCCcCcccc--cchhHHHHHHHHHHHHHcCCccc
Q psy17575        382 GYKPYQITH--SSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd~~~~--qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      |+.+|....  .+.+.+...+...+|.++|.+|.
T Consensus        82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~  115 (530)
T TIGR00398        82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYE  115 (530)
T ss_pred             CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            999885433  33366667778889999999983

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=98.86  E-value=5.9e-09  Score=114.53  Aligned_cols=93  Identities=22%  Similarity=0.296  Sum_probs=69.1

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHcC
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWLG  382 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WLG  382 (832)
                      +|==+|.|||.+||||+++.++...+||.  ..|   .++.-+||.+.+             .-...+.+.|.++++.||
T Consensus         4 it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~Lg   83 (319)
T cd00814           4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLN   83 (319)
T ss_pred             EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence            33346999999999999999988887773  334   455667777543             234578889999999999


Q ss_pred             CCcCcccccch--hHHHHHHHHHHHHHcCCccc
Q psy17575        383 YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       383 l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~  413 (832)
                      +.+|..+..++  +.+...+...+|.++|.+|.
T Consensus        84 I~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~  116 (319)
T cd00814          84 ISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE  116 (319)
T ss_pred             CcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence            99885443333  44556677789999999985

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>PLN02224 methionine-tRNA ligase

Probab=98.81  E-value=4.4e-08  Score=116.29  Aligned_cols=280  Identities=16%  Similarity=0.123  Sum_probs=146.8

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WL  381 (832)
                      ++|==+|.|||.+|||||++.++-..+||.  ..|   .|+-=+||-+.+             .-..++...+.+.+++|
T Consensus        72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l  151 (616)
T PLN02224         72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL  151 (616)
T ss_pred             EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence            566667899999999999999998888775  233   455566666522             12346777888999999


Q ss_pred             CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CC-------CHHHHhccCCCCCCCCCCCh----hHh----
Q psy17575        382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQ-------KSDEMKGFNPLPSPWRERPV----EEN----  439 (832)
Q Consensus       382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~C-------s~eel~~~~~~~~~~R~r~~----ee~----  439 (832)
                      |+.+|..+..++  +....++...+|.++|..|.-     +|       +..++..  +..|++-..++    +++    
T Consensus       152 ~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~--~~~~~~~~~~~~~~~e~~~ff~  229 (616)
T PLN02224        152 DIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLE--NNCCPVHQMPCVARKEDNYFFA  229 (616)
T ss_pred             CCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcC--CCCCCCCCCcceEEecceEEEE
Confidence            999996555444  444455566689999998853     23       2333321  11122211111    111    


Q ss_pred             HHHHHHHHcCcccCCCceEE----EEe--c-ccCCCCCceEEEee--e-CCCCCCCCceeEee------ccceeee--ee
Q psy17575        440 VKLFEAMKNGLIDEGEATLR----MKI--T-LEEGKQDPVAYRIK--F-LPHHRTGDSWCIYP------TYDYTHC--LC  501 (832)
Q Consensus       440 L~~f~~m~~g~~~~g~~~lR----~K~--~-~~~~~~D~V~~Ri~--~-~~h~r~gd~~~i~P------tY~fA~~--Vd  501 (832)
                      |..|++.....+.+.+..++    .+.  . +.++..|.-+=|-.  + -|-|-. ++-+||.      .|--+..  .+
T Consensus       230 Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~-~~~viYVWfDAl~~Yls~~~~~~~  308 (616)
T PLN02224        230 LSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDD-DKQTIYVWFDALLGYISALTEDNK  308 (616)
T ss_pred             hHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCC-CCcEEEEehhhHHHHHHHhccccc
Confidence            22232222222211110000    000  0 00112232222200  0 011111 1112211      1111000  00


Q ss_pred             c----C--C---CCcceeeecccccccchh-HHHHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCc
Q psy17575        502 D----S--I---EHITHSLCTKEFQSRRSS-YYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDP  570 (832)
Q Consensus       502 D----~--l---~gITHvlRg~E~~~~~~~-~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDP  570 (832)
                      +    .  .   -..-|++ |.|.+..+.. .-.+..++|+..|..+- .+++.++|.||||++++.      |      
T Consensus       309 ~~~~~~~~~~~w~~~v~~i-GKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l~~eG~KMSKS~GN~------i------  375 (616)
T PLN02224        309 QQNLETAVSFGWPASLHLI-GKDILRFHAVYWPAMLMSAGLELPKMVFGHGFLTKDGMKMGKSLGNT------L------  375 (616)
T ss_pred             ccccchhhccCCCcceEEE-eecccccHHHHHHHHHHHCCCCCCcEEEecccEecCCccccccCCcc------C------
Confidence            0    0  0   0122332 7887754332 22334456777775433 577889999999998642      1      


Q ss_pred             chhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHH-HHHHHhhcc
Q psy17575        571 RLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLE-AVVREVLND  619 (832)
Q Consensus       571 r~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le-~~~r~~l~~  619 (832)
                         ....+.++ |.+++++-||+..+.-..+..|+++.+. ..+.+.++.
T Consensus       376 ---~p~e~l~~-ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~  421 (616)
T PLN02224        376 ---EPFELVQK-FGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANT  421 (616)
T ss_pred             ---CHHHHHHH-cCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence               34455554 8999999999998766778899988753 445555543

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=98.80  E-value=1.5e-08  Score=110.74  Aligned_cols=249  Identities=18%  Similarity=0.093  Sum_probs=127.9

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc--------------------------cHHHHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE--------------------------EEKFFTG  373 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~--------------------------~~e~~~~  373 (832)
                      +|+|||.+||||+++.++-..++|     .+.-.++.-+||.+.+.+                          ..++.+.
T Consensus         8 pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T cd00668           8 PPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGE   87 (312)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHH
Confidence            799999999999999776655554     344456666666542211                          2367789


Q ss_pred             HHHHHHHcCCCcC--cc--cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCC-ChhHhHHHHHHHHc
Q psy17575        374 IKDMVQWLGYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRER-PVEENVKLFEAMKN  448 (832)
Q Consensus       374 I~edL~WLGl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r-~~ee~L~~f~~m~~  448 (832)
                      |.++++.||+..|  ..  +....+.+...+...+|.++|++|.-.-..   .....   -+-.. ...+  .+.+.+..
T Consensus        88 ~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v---~~~~~---~f~~~~~l~~--~~~~~~~~  159 (312)
T cd00668          88 HKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV---RITEQ---WFFDMPKFKE--KLLKALRR  159 (312)
T ss_pred             HHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee---Eeeee---EEEEcHHHHH--HHHHHHhc
Confidence            9999999999765  32  333445566667778999999999843211   00000   00000 0000  01111111


Q ss_pred             CcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEee-----ccceeee--eec-----CCCCcceeeecccc
Q psy17575        449 GLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYP-----TYDYTHC--LCD-----SIEHITHSLCTKEF  516 (832)
Q Consensus       449 g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P-----tY~fA~~--VdD-----~l~gITHvlRg~E~  516 (832)
                      +.... +..-+.-.++-....|+.+-|-..=.+++-  .|+|+-     .+-+++.  ..+     ......--+=|.|+
T Consensus       160 ~~~~p-~~~~~~~~~~l~~~~d~~isR~~~WG~~~P--~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~  236 (312)
T cd00668         160 GKIVP-EHVKNRMEAWLESLLDWAISRQRYWGTPLP--EDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDI  236 (312)
T ss_pred             CCcCC-hHHHHHHHHHHhCCCCeEEeccCCCCCcCC--cccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecch
Confidence            11000 000000000000112555544221111111  122211     0001100  000     00022223337887


Q ss_pred             c-ccchhHHHHHHhcCCC-CC-CcccccccCCCC-cccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHH
Q psy17575        517 Q-SRRSSYYWLCNALDIY-CP-VQWEYGRLNVNY-TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFC  592 (832)
Q Consensus       517 ~-~~~~~~~~L~~aL~~~-~P-~~~ef~hL~l~g-tkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl  592 (832)
                      . ........+..+++.+ .| ..|-++++.+.| .|||||+++.               .++..+.+. +.|+|++-|+
T Consensus       237 ~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~---------------v~~~d~~~~-~~~da~R~~l  300 (312)
T cd00668         237 LRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNV---------------IDPSDVVEK-YGADALRYYL  300 (312)
T ss_pred             hhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCc---------------CCHHHHHHH-cCcHHHHHHH
Confidence            7 5555555666677654 33 344567778877 9999999642               356777766 9999999999


Q ss_pred             HHhCCCCC
Q psy17575        593 ARMGVTGA  600 (832)
Q Consensus       593 ~~lG~s~~  600 (832)
                      +..+-...
T Consensus       301 ~~~~~~~~  308 (312)
T cd00668         301 TSLAPYGD  308 (312)
T ss_pred             HhcCCccC
Confidence            88764333

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>KOG2007|consensus

Probab=98.79  E-value=2.9e-08  Score=112.04  Aligned_cols=243  Identities=13%  Similarity=0.124  Sum_probs=162.9

Q ss_pred             CCCCCCcCchHHHHHHHHH---HHHHH---hcCCEEEEeccCCCccc---cc---------------HHHHHHHHHHHHH
Q psy17575        325 PPEPNGILHIGHAKAININ---FGYAA---AHNGICFLRYDDTNPEK---EE---------------EKFFTGIKDMVQW  380 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n---~l~Ar---~~gG~~iLRiDDTDp~r---~~---------------~e~~~~I~edL~W  380 (832)
                      .|+....-||||||+++--   .-+-+   .|+-.|+..|.|+|.+.   ..               .-|++....|+..
T Consensus        62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~  141 (586)
T KOG2007|consen   62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAA  141 (586)
T ss_pred             cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence            5777788999999998843   22333   46789999999999752   21               1266889999999


Q ss_pred             cCC-CcCcccccchhHHHHHHHHHHHHHcCCccccCCCHH-HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575        381 LGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATL  458 (832)
Q Consensus       381 LGl-~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l  458 (832)
                      |.. .|+.+++-|+|.+++..+++++|++|.||+-.-|.. ++.++.   ..|--..  ..+   +.+..   .+|..++
T Consensus       142 LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~---~~YgKL~--G~~---~~~~~---gEg~l~d  210 (586)
T KOG2007|consen  142 LNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP---HSYGKLV--GQR---KNLQE---GEGVLSD  210 (586)
T ss_pred             hCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc---chhhhhc--Cch---hhccc---CcCcccc
Confidence            995 566888999999999999999999999999855443 333332   1111100  000   11111   2333330


Q ss_pred             EEEecccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhcCCC
Q psy17575        459 RMKITLEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNALDIY  533 (832)
Q Consensus       459 R~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL~~~  533 (832)
                          ...-...|+.+|+-.....|.=...| .+-|.||..|.+ .-++.|-+--|.  |.|+. +++...+..+.|-= .
T Consensus       211 ----s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~-~  285 (586)
T KOG2007|consen  211 ----SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAF-D  285 (586)
T ss_pred             ----ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHh-c
Confidence                00012368888886654333222233 358999999888 455677777777  67775 77777777777641 1


Q ss_pred             CC----CcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575        534 CP----VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG  599 (832)
Q Consensus       534 ~P----~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~  599 (832)
                      .+    ...+-|||.+.|.||||+..+               +.||+.+.+ -|+|-+++-||+...|..
T Consensus       286 ~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIke~Lk-~~sp~qLRl~fl~~~wr~  339 (586)
T KOG2007|consen  286 DSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIKEALK-KYSPRQLRLAFLLHQWRS  339 (586)
T ss_pred             CCccceeEEEcCeeeeccchhhhhhcc---------------ceeHHHHHH-hcCHHHHHHHHHHHHhcC
Confidence            12    111348999999999999754               348888766 699999999999888753

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=98.65  E-value=1.4e-07  Score=113.04  Aligned_cols=95  Identities=21%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WL  381 (832)
                      ++|==.|.|||.+||||+++.+....+||.  ..|   .|+.=.||-+.+             .-...+.+.|.+++++|
T Consensus         7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l   86 (648)
T PRK12267          7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL   86 (648)
T ss_pred             EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            445556999999999999999998888774  334   444445554433             22457889999999999


Q ss_pred             CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      |+.+|..++.++  +.....+...+|.++|++|.-
T Consensus        87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~  121 (648)
T PRK12267         87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKG  121 (648)
T ss_pred             CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence            999986555554  444445666789999999864

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=98.62  E-value=4.4e-07  Score=109.26  Aligned_cols=94  Identities=19%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~WL  381 (832)
                      ++|==+|.|||.+||||+++.++-..+||.  ..|.=++-+-.||                |..-...|.+.+.+++++|
T Consensus         5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l   84 (673)
T PRK00133          5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF   84 (673)
T ss_pred             EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            344446899999999999999999888874  3343233333333                2333467999999999999


Q ss_pred             CCCcCcccccc--hhHHHHHHHHHHHHHcCCccc
Q psy17575        382 GYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~  413 (832)
                      |+.+|..+..+  +|.....+...+|+++|.+|.
T Consensus        85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~  118 (673)
T PRK00133         85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIYE  118 (673)
T ss_pred             CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence            99988543333  467777788889999999885

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=98.61  E-value=1.5e-07  Score=110.65  Aligned_cols=95  Identities=22%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             eEEeeCCCCCCcCchHHHHHH-HHHHHHHHh--cCC---EEEEeccCCCccc-------------ccHHHHHHHHHHHHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKAI-NINFGYAAA--HNG---ICFLRYDDTNPEK-------------EEEKFFTGIKDMVQW  380 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaa-L~n~l~Ar~--~gG---~~iLRiDDTDp~r-------------~~~e~~~~I~edL~W  380 (832)
                      ++|==+|.|||.|||||+++. +.-..+||.  ..|   .|+.=+||.+.+-             -...+.+.+.++++.
T Consensus         6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~   85 (556)
T PRK12268          6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK   85 (556)
T ss_pred             EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            445557999999999999998 766666653  234   4555555554331             135788999999999


Q ss_pred             cCCCcCcccccc--hhHHHHHHHHHHHHHcCCcccc
Q psy17575        381 LGYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       381 LGl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ||+.+|..+..+  ++.+...+...+|.++|.+|.-
T Consensus        86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~  121 (556)
T PRK12268         86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKK  121 (556)
T ss_pred             cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEe
Confidence            999998655555  6777777888899999999953

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=98.57  E-value=1.8e-07  Score=102.85  Aligned_cols=91  Identities=24%  Similarity=0.295  Sum_probs=63.8

Q ss_pred             eeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC
Q psy17575        323 RFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       323 RFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~  384 (832)
                      ==+|.|||.+||||+++.+.-..+||.     +.-.++.-+||.+.+-+             ...+.+.+.++++.||+.
T Consensus         6 ~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~   85 (314)
T cd00812           6 VMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFS   85 (314)
T ss_pred             cCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            336999999999999999888776653     34457777888864432             367889999999999998


Q ss_pred             cC--cccc-cchhHHH-HHHHHHHHHHcCCccc
Q psy17575        385 PY--QITH-SSDYFHQ-LYEWAVKLIKKGLAYV  413 (832)
Q Consensus       385 pd--~~~~-qSd~~~~-~ye~A~~Li~~G~AY~  413 (832)
                      +|  .... .++.+.. ......+|.++|.+|.
T Consensus        86 ~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~  118 (314)
T cd00812          86 YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK  118 (314)
T ss_pred             eecccccccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence            76  2211 2222222 2223348999999984

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=98.57  E-value=2.9e-07  Score=107.52  Aligned_cols=238  Identities=18%  Similarity=0.174  Sum_probs=142.3

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccccc--------------------------
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEE--------------------------  367 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~--------------------------  367 (832)
                      .++.-=+.+|||.+||||++.++..+.+||.     +.-.|+.=-||-|+-|..                          
T Consensus        24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G  103 (510)
T PRK00750         24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG  103 (510)
T ss_pred             cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence            3777778899999999999999988777764     345677777999863322                          


Q ss_pred             ------HHHHHHHHHHHHHcCCCcCcc----cccchhHHHHHHHHHH-HHHcCCccccCCCHHHHhccCC-----CCCCC
Q psy17575        368 ------EKFFTGIKDMVQWLGYKPYQI----THSSDYFHQLYEWAVK-LIKKGLAYVCHQKSDEMKGFNP-----LPSPW  431 (832)
Q Consensus       368 ------~e~~~~I~edL~WLGl~pd~~----~~qSd~~~~~ye~A~~-Li~~G~AY~C~Cs~eel~~~~~-----~~~~~  431 (832)
                            ..|...+.+.++.+|+.++..    .|+|..|.   +.... |-+.+...      +-|....+     ..+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~gi~~d~~~~t~~y~~g~~~---~~i~~~l~~~~~i~------~il~~~~~~~~~~~~~P~  174 (510)
T PRK00750        104 CHESYAEHFNAPLREFLDRFGIEYEFISATECYKSGRYD---EAILTALENRDEIM------EILLPYLGEERQATYSPF  174 (510)
T ss_pred             CchHHHHHHHHHHHHHHHHcCCceEEEehhhhhccCchH---HHHHHHHHhHHHHH------HHHHHhcCCccCCCeeee
Confidence                  345667788899999988732    22333332   22222 22222111      11111111     01111


Q ss_pred             CCCChhHhHHHHHHHHcCcccCCCceEEE-EecccCCCCCceEEEeeeCCC-----CCCCC-c--eeE-eeccceeeeee
Q psy17575        432 RERPVEENVKLFEAMKNGLIDEGEATLRM-KITLEEGKQDPVAYRIKFLPH-----HRTGD-S--WCI-YPTYDYTHCLC  501 (832)
Q Consensus       432 R~r~~ee~L~~f~~m~~g~~~~g~~~lR~-K~~~~~~~~D~V~~Ri~~~~h-----~r~gd-~--~~i-~PtY~fA~~Vd  501 (832)
                        .++.+        ..|+..    +..+ ..+..   ..-|.|++. ..|     .+.|. +  |.+ ||+       -
T Consensus       175 --~pic~--------~cg~~~----~~~~~~~d~~---~~~v~y~~~-cG~~~~~~~~~g~~KL~Wr~dW~~-------r  229 (510)
T PRK00750        175 --LPICP--------KCGKVL----TTPVISYDAE---AGTVTYDCE-CGHEGEVPVTGGHGKLQWKVDWPM-------R  229 (510)
T ss_pred             --eeeCC--------CCCccc----eEEEEEEeCC---CCEEEEEcC-CCCEEEEecCCCCcccCCCCCcHH-------H
Confidence              01111        022221    1111 22211   112445432 111     12221 1  544 443       2


Q ss_pred             cCCCCcceeeecccccc-cchhHHHHHH-hcCCCCCCcccccccCCC-CcccchhHHHHhhhcCccCCCCCcchhhHHHH
Q psy17575        502 DSIEHITHSLCTKEFQS-RRSSYYWLCN-ALDIYCPVQWEYGRLNVN-YTVVSKRKIAKLIEENIVNDWDDPRLFTLTAL  578 (832)
Q Consensus       502 D~l~gITHvlRg~E~~~-~~~~~~~L~~-aL~~~~P~~~ef~hL~l~-gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~l  578 (832)
                      -+..||+..+.|.||.. +...+..+++ .||...|....|+.+.+. |.|||||+++.               .++..+
T Consensus       230 W~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~---------------i~~~d~  294 (510)
T PRK00750        230 WAALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV---------------ITIEDW  294 (510)
T ss_pred             HHHcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc---------------cCHHHH
Confidence            24689999999999999 9999999999 999999988889888887 99999999642               256666


Q ss_pred             HHcCCCHHHHHHHHHHhCCCCCCcccCH
Q psy17575        579 RRRGFPPEAINKFCARMGVTGAQAVVSP  606 (832)
Q Consensus       579 rrrG~~PeAI~nfl~~lG~s~~~~~~~~  606 (832)
                      .+. +.|++++-|+..-.-...+..|++
T Consensus       295 l~~-~~pd~lR~~l~~~~~~~~~~~f~~  321 (510)
T PRK00750        295 LEY-APPESLRLFMFARPKPAKRLDFDV  321 (510)
T ss_pred             HHH-CCHHHHHHHHHhCCCCCCCCcccH
Confidence            554 899999988876544444555654

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=98.50  E-value=4.9e-06  Score=93.05  Aligned_cols=243  Identities=20%  Similarity=0.192  Sum_probs=144.0

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc--------------------------
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE--------------------------  366 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~--------------------------  366 (832)
                      .+++.-=+++|||.+||||++..+....+||.     +.-.|+.=.||-|+-|.                          
T Consensus        19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~   98 (353)
T cd00674          19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC   98 (353)
T ss_pred             CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence            34666668899999999999998887766654     45678888888876333                          


Q ss_pred             ----cHHHHHHHHHHHHHcCCCcCcccccchhHHHHH-HHHH-HHHHcCCccccCCCHHHHhccCCC-----CCCCCCCC
Q psy17575        367 ----EEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLY-EWAV-KLIKKGLAYVCHQKSDEMKGFNPL-----PSPWRERP  435 (832)
Q Consensus       367 ----~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~y-e~A~-~Li~~G~AY~C~Cs~eel~~~~~~-----~~~~R~r~  435 (832)
                          ...+...+.+.|+.||+.++.++....|-.-.| +... .|-+.+....      -|....+.     .+|.  .+
T Consensus        99 ~~~~~d~~~~~f~~~l~~lgi~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~------i~~~~~~~~~~~~~~P~--~p  170 (353)
T cd00674          99 CESYAEHFERPFEESLEKLGIEVEFISQSQMYKSGLYDENILIALEKRDEIMA------ILNEYRGRELQETWYPF--MP  170 (353)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeeeeeecCCchhhchHHHHHHHHHHHCChHHH------HHHHhcCCccCCCceee--ee
Confidence                235667788899999999874332222222222 2333 3555544321      12221110     0111  01


Q ss_pred             hhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCC-----CCCCC-c--eeE-eeccceeeeeecCCCC
Q psy17575        436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPH-----HRTGD-S--WCI-YPTYDYTHCLCDSIEH  506 (832)
Q Consensus       436 ~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h-----~r~gd-~--~~i-~PtY~fA~~VdD~l~g  506 (832)
                      +.++        .|+..  ..+  ...+.+   ..-|.|++. .-|     .+.|. +  |.+ ||+       .-+..|
T Consensus       171 ~c~~--------cg~~~--~~v--~~~d~~---~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~-------rW~~l~  227 (353)
T cd00674         171 YCEK--------CGKDT--TTV--EAYDAK---AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPM-------RWAILG  227 (353)
T ss_pred             ecCC--------cCcce--eEE--EEEeCC---CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchh-------hhhhcC
Confidence            1110        12110  001  011111   123556542 111     11221 1  544 443       234678


Q ss_pred             cceeeeccccccc---chhHHHHHH-hcCCCCCCcccccccCCCCc-ccchhHHHHhhhcCccCCCCCcchhhHHHHHHc
Q psy17575        507 ITHSLCTKEFQSR---RSSYYWLCN-ALDIYCPVQWEYGRLNVNYT-VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRR  581 (832)
Q Consensus       507 ITHvlRg~E~~~~---~~~~~~L~~-aL~~~~P~~~ef~hL~l~gt-kLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrr  581 (832)
                      |+--+=|.||..+   ...-..+++ .||...|....|+.+.+.+. |||||+++-               .++..+.+.
T Consensus       228 Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnv---------------I~~~dll~~  292 (353)
T cd00674         228 VDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNV---------------ITPSDWLEV  292 (353)
T ss_pred             CCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCc---------------CCHHHHHHH
Confidence            9999999999877   666677887 99999898777888888765 999999642               367777776


Q ss_pred             CCCHHHHHHHHHHhCCCCCCcccCHH
Q psy17575        582 GFPPEAINKFCARMGVTGAQAVVSPN  607 (832)
Q Consensus       582 G~~PeAI~nfl~~lG~s~~~~~~~~~  607 (832)
                       +.|++|+-|++...-...+..|+++
T Consensus       293 -~~~dalR~~~l~~~~~~~~i~Fd~~  317 (353)
T cd00674         293 -APPEVLRYLYARRKNPEKHIGFDLD  317 (353)
T ss_pred             -hChHHHHHHHHhCCCCCCCCCcChh
Confidence             8899999998887633345566654

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase

Probab=98.49  E-value=4.1e-07  Score=98.71  Aligned_cols=171  Identities=16%  Similarity=0.111  Sum_probs=115.5

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccccchhHHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQ  397 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~  397 (832)
                      .|||.|||||...|+.+|...+..|..+++.|-|.       +..++..++...+..++.++|++|++  +..||++. .
T Consensus         7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~   85 (280)
T cd00806           7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E   85 (280)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence            48899999999999999999999999999999998       45567778889999999999999973  57799876 4


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEee
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIK  477 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~  477 (832)
                      +++.+-.       +.|.|+..++++.-.    +++            +..+    +          .+.+         
T Consensus        86 ~~~l~~~-------l~~~~~~~~l~r~~~----fk~------------~~~~----~----------~~~~---------  119 (280)
T cd00806          86 HYELAWL-------LSCVVTFGELERMTG----FKD------------KSAQ----G----------ESVN---------  119 (280)
T ss_pred             HHHHHHH-------HhCcCCHHHHHhccc----hhh------------hhcc----C----------CCCc---------
Confidence            5655432       669999999875311    111            1000    0          0000         


Q ss_pred             eCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCcccc--ccc-CCCC-
Q psy17575        478 FLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWEY--GRL-NVNY-  547 (832)
Q Consensus       478 ~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~ef--~hL-~l~g-  547 (832)
                            .|  ...||.-+=   .|=.+.+.++|..|.|-..+-..-.-+.+.++      +..|....=  ..+ .+.| 
T Consensus       120 ------~g--~~~YP~lqa---aDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~  188 (280)
T cd00806         120 ------IG--LLTYPVLQA---ADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGP  188 (280)
T ss_pred             ------ch--hhcchHHHH---hhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCC
Confidence                  00  111333221   12123345899999998877777777888888      566642221  223 3555 


Q ss_pred             -cccchhHH
Q psy17575        548 -TVVSKRKI  555 (832)
Q Consensus       548 -tkLSKRk~  555 (832)
                       +||||+..
T Consensus       189 ~~KMSKS~~  197 (280)
T cd00806         189 SKKMSKSDP  197 (280)
T ss_pred             CCcccCCCC
Confidence             59999975

Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=98.45  E-value=5.8e-07  Score=93.92  Aligned_cols=41  Identities=17%  Similarity=0.096  Sum_probs=34.5

Q ss_pred             eCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcc
Q psy17575        324 FPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPE  364 (832)
Q Consensus       324 FaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~  364 (832)
                      ..|.|+|.+||||+|+.++...+||.     +.-.|+.-+||.+.+
T Consensus        26 ~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~k   71 (213)
T cd00672          26 CGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDK   71 (213)
T ss_pred             eCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCH
Confidence            46999999999999999999887763     446788999999864

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=98.21  E-value=3.2e-06  Score=95.84  Aligned_cols=99  Identities=20%  Similarity=0.156  Sum_probs=64.2

Q ss_pred             cCCCCcceeeeccccccc-chhHHHHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHH
Q psy17575        502 DSIEHITHSLCTKEFQSR-RSSYYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALR  579 (832)
Q Consensus       502 D~l~gITHvlRg~E~~~~-~~~~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lr  579 (832)
                      |....+.|+| |.|.+.. .-.+-.++.++|++.|...- -+++.++|.||||+.+.      .|         ....+.
T Consensus       279 ~~~~~~v~~i-GkDi~~fH~i~~pa~l~a~~~~lP~~i~~~~~~~~~g~K~SkS~gn------~i---------~~~~~~  342 (391)
T PF09334_consen  279 DSDVEIVHFI-GKDIIRFHAIYWPAMLLAAGLPLPRRIVVHGFLTLDGEKMSKSRGN------VI---------WPDDLL  342 (391)
T ss_dssp             T--SEEEEEE-EGGGHHHHHTHHHHHHHHCTB---SEEEEE--EEETTCCEETTTTE------SS---------BHHHHH
T ss_pred             cCCceEEEEE-ccchhHHHHHHhHHHHhcccCCCCCEEEeeeeEEECCeeccccCCc------cc---------CHHHHH
Confidence            3334456665 8887643 33344666778988885432 46788999999999853      22         355566


Q ss_pred             HcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhh
Q psy17575        580 RRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVL  617 (832)
Q Consensus       580 rrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l  617 (832)
                      ++ +.+++++-||+..|.-..++.|+++.+...+...|
T Consensus       343 ~~-~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L  379 (391)
T PF09334_consen  343 EE-YGADALRYYLAREGPEGQDSDFSWEDFIERVNNEL  379 (391)
T ss_dssp             HH-H-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCC
T ss_pred             Hh-CChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            65 89999999999999888999999999877666554

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=1.5e-05  Score=93.74  Aligned_cols=94  Identities=23%  Similarity=0.241  Sum_probs=68.5

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL  381 (832)
                      ++|==-|-|||.+||||+.+.|....+||-  ..|.=.+=+--||.                +.-..++.+.+.++.+||
T Consensus         8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l   87 (558)
T COG0143           8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL   87 (558)
T ss_pred             EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            555556999999999999999999999975  44654554555542                222456778899999999


Q ss_pred             CCCcCcc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575        382 GYKPYQI--THSSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd~~--~~qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      ++..|.-  +..+.+...-.+.-.+|.++|..|.
T Consensus        88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~  121 (558)
T COG0143          88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIYL  121 (558)
T ss_pred             CCcccccccCCCHHHHHHHHHHHHHHHHCCCEec
Confidence            9999843  4444444445566678999998874

>PRK12451 arginyl-tRNA synthetase; Reviewed

Probab=98.20  E-value=1.3e-06  Score=103.18  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=35.5

Q ss_pred             Ccceeee--cccccccchhHHHHHHhcCCCCCCc---ccccccCCCCcccchhHHH
Q psy17575        506 HITHSLC--TKEFQSRRSSYYWLCNALDIYCPVQ---WEYGRLNVNYTVVSKRKIA  556 (832)
Q Consensus       506 gITHvlR--g~E~~~~~~~~~~L~~aL~~~~P~~---~ef~hL~l~gtkLSKRk~~  556 (832)
                      +.+++|=  |.|+..+-++-....++||+..+..   ..|+.+.++|.+||+|++.
T Consensus       323 ~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~  378 (562)
T PRK12451        323 GFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGR  378 (562)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCC
Confidence            4555554  7777766666667788899764321   2367777888999999964

>TIGR00456 argS arginyl-tRNA synthetase

Probab=98.14  E-value=2.2e-06  Score=101.34  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=39.7

Q ss_pred             eeccceeeeeecCCCCcceeee--cccccccchhHHHHHHhcCCCCCCccc-ccccCCCCcccchhHHH
Q psy17575        491 YPTYDYTHCLCDSIEHITHSLC--TKEFQSRRSSYYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIA  556 (832)
Q Consensus       491 ~PtY~fA~~VdD~l~gITHvlR--g~E~~~~~~~~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~  556 (832)
                      |.|=|+|....=...+.+++|=  |.||..+-.+-.....+||++.|.... .++--+.+.+||||++.
T Consensus       311 Y~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn  379 (566)
T TIGR00456       311 YLTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGN  379 (566)
T ss_pred             echhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCc
Confidence            4444444333211225666654  888877777767788899987775322 22222356899999864

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>PLN02610 probable methionyl-tRNA synthetase

Probab=98.13  E-value=3.1e-05  Score=95.02  Aligned_cols=89  Identities=12%  Similarity=-0.078  Sum_probs=61.3

Q ss_pred             ceeeecccccccchh-HHHHHHhcCCC--CCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCC
Q psy17575        508 THSLCTKEFQSRRSS-YYWLCNALDIY--CPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGF  583 (832)
Q Consensus       508 THvlRg~E~~~~~~~-~~~L~~aL~~~--~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~  583 (832)
                      .|+| |.|-+.-+.. .-.++-++|..  .|...- -+++.++|.||||++++      .|         ....+.+++|
T Consensus       304 ~hfi-GKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~~eG~KMSKS~GN------vV---------~p~~~i~~~y  367 (801)
T PLN02610        304 YQFM-GKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLNYEGGKFSKSKGV------GV---------FGNDAKDTNI  367 (801)
T ss_pred             EEEE-eeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEecCCceecCcCCc------cc---------CHHHHHhccC
Confidence            4554 7776543332 23455566743  564322 46688999999999864      12         3456677789


Q ss_pred             CHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575        584 PPEAINKFCARMGVTGAQAVVSPNMLEAV  612 (832)
Q Consensus       584 ~PeAI~nfl~~lG~s~~~~~~~~~~le~~  612 (832)
                      .++++|-||+..+--..+..|+|+.|...
T Consensus       368 g~D~lRyyLl~~~p~~~D~dFs~~~f~~~  396 (801)
T PLN02610        368 PVEVWRYYLLTNRPEVSDTLFTWADLQAK  396 (801)
T ss_pred             CchHhHHHhhhcCCCCCCCcCCHHHHHHH
Confidence            99999999999887778999999766443

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=98.06  E-value=5.3e-06  Score=92.23  Aligned_cols=91  Identities=23%  Similarity=0.239  Sum_probs=67.2

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCC---EEEEeccC----CCcccc--------------------------cHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNG---ICFLRYDD----TNPEKE--------------------------EEK  369 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG---~~iLRiDD----TDp~r~--------------------------~~e  369 (832)
                      ||.|||.+|||||++.++...++|.  ..|   .++.-+||    ++.+.+                          ..+
T Consensus         9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~   88 (338)
T cd00818           9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR   88 (338)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence            7999999999999999888777764  233   45555666    332111                          235


Q ss_pred             HHHHHHHHHHHcCC--CcCc--ccccchhHHHHHHHHHHHHHcCCccccC
Q psy17575        370 FFTGIKDMVQWLGY--KPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCH  415 (832)
Q Consensus       370 ~~~~I~edL~WLGl--~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~  415 (832)
                      +.+.+.++++.||+  .|+.  .+...++.+...+...+|+++|++|.-.
T Consensus        89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~  138 (338)
T cd00818          89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY  138 (338)
T ss_pred             HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence            67899999999999  6653  4555677777888888999999999753

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=98.02  E-value=8.3e-05  Score=87.11  Aligned_cols=237  Identities=16%  Similarity=0.178  Sum_probs=133.5

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccccH------------------------
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEEE------------------------  368 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~~------------------------  368 (832)
                      +.++.-=+=+|||.+||||++..+....+||.     +.-+||.=-||-||-|..+                        
T Consensus        18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~   97 (515)
T TIGR00467        18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC   97 (515)
T ss_pred             CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence            35666667779999999999999888777764     4567888888887766432                        


Q ss_pred             ------HHHHHHHHHHHHcCCCcCc----ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc----CC-----CCC
Q psy17575        369 ------KFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF----NP-----LPS  429 (832)
Q Consensus       369 ------e~~~~I~edL~WLGl~pd~----~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~----~~-----~~~  429 (832)
                            .|-..+.++|.-||+++..    ..|+|-.|+.   .....++         .++++.+.    .+     ..+
T Consensus        98 ~~s~~~h~~~~~~~~l~~~gi~~e~~s~te~Y~sG~~~~---~i~~~L~---------~~~~I~~il~~~~~~~~~~~~~  165 (515)
T TIGR00467        98 KTSYAEHFLIPFLESLPVLGINPEFIRASKQYTSGLYAS---QIKIALD---------HRKEISEILNEYRTSKLEENWY  165 (515)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCeEEEEEHHHhhhcCChHH---HHHHHHH---------hHHHHHHHHHHhcCCccCCCce
Confidence                  3444567777778886432    1233333332   2222221         12333321    11     011


Q ss_pred             CCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCC-----CCCC-Cc--eeE-eeccceeeee
Q psy17575        430 PWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPH-----HRTG-DS--WCI-YPTYDYTHCL  500 (832)
Q Consensus       430 ~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h-----~r~g-d~--~~i-~PtY~fA~~V  500 (832)
                      |.  .++.+        +.|+...  .++  ..+.    .+.|.|++. ..|     .+.| .+  |.+ ||+=      
T Consensus       166 P~--~pic~--------~cGrv~~--~~~--~~~~----~~~v~Y~c~-cG~~g~~~~~~g~~KL~WkvdW~~R------  220 (515)
T TIGR00467       166 PI--SVFCE--------NCGRDTT--TVN--NYDN----EYSIEYSCE-CGNQESVDIYTGAIKLPWRVDWPAR------  220 (515)
T ss_pred             ee--eeecC--------CcCccCc--eEE--EecC----CceEEEEcC-CCCEEEEeecCCCcccCCCCCcHhh------
Confidence            11  11111        1233211  111  1111    114666653 111     1111 11  544 4432      


Q ss_pred             ecCCCCcceeeecccccccc---hhHHHHH-HhcCCCCCC--cccccccCCCCcccchhHHHHhhhcCccCCCCCcchhh
Q psy17575        501 CDSIEHITHSLCTKEFQSRR---SSYYWLC-NALDIYCPV--QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFT  574 (832)
Q Consensus       501 dD~l~gITHvlRg~E~~~~~---~~~~~L~-~aL~~~~P~--~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~t  574 (832)
                       -+..|||-=-=|.||..+.   .....++ ++||.++|.  .++|-||...|.|||||+++               ..|
T Consensus       221 -W~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~it  284 (515)
T TIGR00467       221 -WKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VIS  284 (515)
T ss_pred             -HhhhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------Ccc
Confidence             2346777777799998644   3334455 489888774  45567777678899999964               248


Q ss_pred             HHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHH
Q psy17575        575 LTALRRRGFPPEAINKFCARMGVTGAQAVVSPNML  609 (832)
Q Consensus       575 L~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~l  609 (832)
                      +..+.+. +.|++++-|+..-. ..+...|+++.|
T Consensus       285 l~dll~~-~~pdalR~~~l~~~-~~~~ldFd~~~l  317 (515)
T TIGR00467       285 VKDVLEV-YTPEITRFLFARTK-PEFHISFDLDVI  317 (515)
T ss_pred             HHHHHHH-cCHHHHHHHHhccC-CCCCCcCCHHHH
Confidence            8888887 89999998754433 455667777766

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>TIGR00233 trpS tryptophanyl-tRNA synthetase

Probab=97.74  E-value=9.8e-05  Score=82.08  Aligned_cols=169  Identities=18%  Similarity=0.198  Sum_probs=104.8

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc----cccHHHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE----KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFH  396 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~----r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~  396 (832)
                      .|||.+||||...++.+|..- +.|..+++=|-|.    ++.    .......+.+..++-.+|++|+  .+..||+.. 
T Consensus        10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~-   87 (328)
T TIGR00233        10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP-   87 (328)
T ss_pred             CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence            588999999999999999877 6677766666654    221    1233455566677778999998  468899976 


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEe
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRI  476 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri  476 (832)
                      .|++.+-.|-       |++|-.++++.-.    +.++...               +                ++     
T Consensus        88 e~~el~~~l~-------~~~t~~~l~r~~~----~k~k~~~---------------~----------------~~-----  120 (328)
T TIGR00233        88 EHYELAWLLS-------CQVTFGELKRMTQ----FKDKSQA---------------E----------------NV-----  120 (328)
T ss_pred             HHHHHHHHHH-------ccCCHHHHHhccC----cchhccC---------------C----------------CC-----
Confidence            4666665443       8888888865311    1111000               0                00     


Q ss_pred             eeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCccc--c-ccc-CCC
Q psy17575        477 KFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWE--Y-GRL-NVN  546 (832)
Q Consensus       477 ~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~e--f-~hL-~l~  546 (832)
                            ..  ...+||..+=|.++   +.+.++|..|.|-..+-..-.-+.+.+|      +..|....  + .+| .++
T Consensus       121 ------~~--g~l~YP~lqaaDil---~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~  189 (328)
T TIGR00233       121 ------PI--GLFSYPVLQAADIL---LYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLS  189 (328)
T ss_pred             ------Cc--hhhcchHHHHhhhh---hcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCC
Confidence                  00  12236666544332   4578899999997665555555677777      55564221  1 222 245


Q ss_pred             CcccchhHH
Q psy17575        547 YTVVSKRKI  555 (832)
Q Consensus       547 gtkLSKRk~  555 (832)
                      |+||||+..
T Consensus       190 ~~KMSKS~~  198 (328)
T TIGR00233       190 GKKMSKSDP  198 (328)
T ss_pred             CCcCCCCCC
Confidence            679999974

This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.

>PLN02286 arginine-tRNA ligase

Probab=97.68  E-value=4.9e-05  Score=90.28  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             ceEEee-CCCCCCcCchHHHHHHHHHHHHHH
Q psy17575        319 KVRTRF-PPEPNGILHIGHAKAININFGYAA  348 (832)
Q Consensus       319 ~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar  348 (832)
                      +|+.=| .|.|||+||+||+|++++=..+|+
T Consensus       118 ~v~VEfsSpNp~kplHvGHlRsaiiGdsLar  148 (576)
T PLN02286        118 RAVVDFSSPNIAKEMHVGHLRSTIIGDTLAR  148 (576)
T ss_pred             eEEEEecCCCCCCCCccccccchhhHHHHHH
Confidence            455544 699999999999999998655554

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed

Probab=97.56  E-value=0.00056  Score=77.22  Aligned_cols=186  Identities=18%  Similarity=0.179  Sum_probs=108.6

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCc----c---cccHHHHHHHHHH
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNP----E---KEEEKFFTGIKDM  377 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp----~---r~~~e~~~~I~ed  377 (832)
                      .+.+.++++.. .-.+.+=|.  |||.|||||.. .+.+|.+-...|..+++-|-|.-.    .   .+..++...++.+
T Consensus        54 ~d~il~~~~~~~~~~iytG~~--PSG~lHLGh~~-~~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~  130 (368)
T PRK12285         54 YDKILEAYRNGKPFAVYTGFM--PSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILD  130 (368)
T ss_pred             HHHHHHHHhcCCCeEEEEccC--CCCCccHHHHH-HHHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHH
Confidence            44444445432 223455555  45899999986 566666556678888877777521    1   1233455557778


Q ss_pred             HHHcCCCcC--cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCC
Q psy17575        378 VQWLGYKPY--QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGE  455 (832)
Q Consensus       378 L~WLGl~pd--~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~  455 (832)
                      +-.+|++|+  .+..||++.+ +|+.+..|       -|.+|-.++++.-+.     ..+.  +                
T Consensus       131 ~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~~~f-----~~~~--~----------------  179 (368)
T PRK12285        131 LIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAIYGF-----TGET--N----------------  179 (368)
T ss_pred             HHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHhhCC-----CCCC--c----------------
Confidence            889999998  4788999874 78877766       467777777543110     0000  0                


Q ss_pred             ceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeee---ecCCCCcceeeecccccccchhHHHHHHhc--
Q psy17575        456 ATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCL---CDSIEHITHSLCTKEFQSRRSSYYWLCNAL--  530 (832)
Q Consensus       456 ~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~V---dD~l~gITHvlRg~E~~~~~~~~~~L~~aL--  530 (832)
                                                  .|  ...||.-+=|.++   .|.-..-++|..|.|-..+-..-.-+...+  
T Consensus       180 ----------------------------~g--~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~  229 (368)
T PRK12285        180 ----------------------------IG--HIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHG  229 (368)
T ss_pred             ----------------------------hh--hhhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhh
Confidence                                        00  1114433322222   111135578999999655444434456666  


Q ss_pred             --CCCCCCccccccc-CCCCcccchhHH
Q psy17575        531 --DIYCPVQWEYGRL-NVNYTVVSKRKI  555 (832)
Q Consensus       531 --~~~~P~~~ef~hL-~l~gtkLSKRk~  555 (832)
                        |+..|....-..+ .++|+||||+..
T Consensus       230 ~~gf~~P~~l~~~~lpgL~G~KMSkS~~  257 (368)
T PRK12285        230 GYGFIKPSSTYHKFMPGLTGGKMSSSKP  257 (368)
T ss_pred             hcCCCCchhHhhhcccCCCCCcCCCCCC
Confidence              8888854322223 567899999973

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=97.55  E-value=0.00017  Score=81.68  Aligned_cols=89  Identities=29%  Similarity=0.292  Sum_probs=61.4

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc---------c-----------------------ccHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE---------K-----------------------EEEKF  370 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~---------r-----------------------~~~e~  370 (832)
                      +|.|||.|||||+++.++.-.+||.  ..|.-++.+--+|.-         +                       -..++
T Consensus         9 pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (382)
T cd00817           9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEES   88 (382)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHH
Confidence            7999999999999999998888765  346555554444431         0                       12357


Q ss_pred             HHHHHHHHHHcCCCcC--cc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575        371 FTGIKDMVQWLGYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       371 ~~~I~edL~WLGl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      .+.+.++++.||+..|  ..  +....+.........+|.++|++|.
T Consensus        89 ~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  135 (382)
T cd00817          89 GGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR  135 (382)
T ss_pred             HHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence            7889999999998644  43  3333333334445568999999987

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00026  Score=83.90  Aligned_cols=30  Identities=37%  Similarity=0.551  Sum_probs=24.3

Q ss_pred             ceEEee-CCCCCCcCchHHHHHHHHHHHHHH
Q psy17575        319 KVRTRF-PPEPNGILHIGHAKAININFGYAA  348 (832)
Q Consensus       319 ~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar  348 (832)
                      +|+.=| +|.|||+|||||+|.+++--.+||
T Consensus       118 kV~iE~sSaNptkplHiGHlR~aiiGDsLar  148 (577)
T COG0018         118 KVVIEYSSANPTGPLHIGHLRNAIIGDSLAR  148 (577)
T ss_pred             EEEEEEeCCCCCCCcccchhhhhHHHHHHHH
Confidence            555555 799999999999999998765555

>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.0038  Score=72.12  Aligned_cols=164  Identities=15%  Similarity=0.304  Sum_probs=124.2

Q ss_pred             HHHHHH-HhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCC-------CccchHHHHHH
Q psy17575         64 SMISAF-LSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ-------SSIHLPLLVKY  135 (832)
Q Consensus        64 ~l~~lF-~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~-------~~~~r~~l~~~  135 (832)
                      +.++.| ...|||++-|.++++.+.+ ..|.++.+. ++.    +.-.+..|.+.-..+...       ...|..-+.+.
T Consensus       458 ek~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~----p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~  531 (631)
T COG2511         458 EKVERYVKEYGLSKELAEQLASDPRV-DLFEELVEK-GVD----PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRL  531 (631)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC----HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHH
Confidence            445555 4489999999999998665 345444433 442    344455555544333322       35778889999


Q ss_pred             HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh-
Q psy17575        136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT-  214 (832)
Q Consensus       136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~-  214 (832)
                      +.+|+|.- .|+..+++++.+++. -+.++.-+..|.. ..++|||++.|.++++++.+.+.+.+-. .+|.|||.+=+ 
T Consensus       532 ~~~g~iak-e~iee~l~~l~~~p~-~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~-a~g~lmg~~M~~  607 (631)
T COG2511         532 VSEGKIAK-EAIEEILKALAENPG-KDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMG-AMGLLMGRVMAK  607 (631)
T ss_pred             HhcccchH-HHHHHHHHHHHhCCC-CCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchh-hHHHHHHHHHHH
Confidence            99999985 999999999998764 6778888887764 7899999999999999999998887766 58899998544 


Q ss_pred             hCCCCChhhhHHHHHHHHHhhcC
Q psy17575        215 LLKWADGKYIKSEVDVQVLNLLG  237 (832)
Q Consensus       215 ~LkWAd~k~vK~~vD~~~l~lLG  237 (832)
                      .=-=|||+.|...+.+.+.+.+|
T Consensus       608 ~rg~aDgk~v~e~lr~~i~e~~~  630 (631)
T COG2511         608 LRGRADGKLVSEILREKLQEILG  630 (631)
T ss_pred             hhccCCcHHHHHHHHHHHHHhhc
Confidence            33469999999999998888776

>PRK12556 tryptophanyl-tRNA synthetase; Provisional

Probab=97.28  E-value=0.0014  Score=73.10  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             CCCCcCchHHHHHHHHHHHHH-HhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575        327 EPNGILHIGHAKAININFGYA-AAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFH  396 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~A-r~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~  396 (832)
                      .|||.+||||...++-||..- ..+|..+++=|=|.       ||+. ..++...+..++-.+|++|+  .+..||+.-+
T Consensus        11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~-l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~   89 (332)
T PRK12556         11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQ-FRSYTREVAATWLSLGLDPEDVIFYRQSDVPE   89 (332)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHH-HHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence            478999999999999999655 44565555545443       2222 23444456667778999998  4788999643


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKGF  424 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~  424 (832)
                       .++.+..       ..|.++-.+|.++
T Consensus        90 -~~eL~~i-------l~~~t~~g~L~R~  109 (332)
T PRK12556         90 -IFELAWI-------LSCLTPKGLMNRA  109 (332)
T ss_pred             -HHHHHHH-------HHccchHHHHHhc
Confidence             3443332       3478777777643

>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E

Probab=97.26  E-value=0.0048  Score=73.75  Aligned_cols=159  Identities=15%  Similarity=0.201  Sum_probs=117.8

Q ss_pred             HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCC-------CccchHHHHHH
Q psy17575         64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ-------SSIHLPLLVKY  135 (832)
Q Consensus        64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~-------~~~~r~~l~~~  135 (832)
                      +..+.|. ..||++.-|.-++.+. .+.-+.+++..++.    -++...+.|.+....++..       ...|...|++.
T Consensus       450 ~~~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~----~~~~~an~l~~~~~~l~~~~~~~~~~~~~~l~~l~~~  524 (620)
T TIGR00134       450 EKKERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV----DPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKL  524 (620)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHH
Confidence            4455555 6899999999988885 67777666554432    2466666666554434322       23688889999


Q ss_pred             HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhh
Q psy17575        136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTL  215 (832)
Q Consensus       136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~  215 (832)
                      |.+|+|.. .++...++.+..++.  +.++.-++.|.. .+|.++|+++|+++|++|.+.+.+.+-+ .+|.+||+|.+.
T Consensus       525 ~~~g~is~-~~~k~vl~~~~~~~~--~~~~iiee~gL~-qlsdeel~~iV~evI~en~~~V~~~~~k-~~G~lmGqVMk~  599 (620)
T TIGR00134       525 LEVGKIAK-EGLREILKCMCDEPL--AAEDAARKLKLK-LLAEEEIESIIQEIIEENLDMISERGEG-AMGPLMGQAMGR  599 (620)
T ss_pred             HHcCCCcH-HHHHHHHHHHHhCCC--CHHHHHHHcCCc-CCCHHHHHHHHHHHHHhChHhhhccCHh-HHHHHHHHHHHH
Confidence            99999975 677778887765543  566788889864 5799999999999999998877775544 689999999875


Q ss_pred             CCC-CChhhhHHHHHHHH
Q psy17575        216 LKW-ADGKYIKSEVDVQV  232 (832)
Q Consensus       216 LkW-Ad~k~vK~~vD~~~  232 (832)
                      .+= |||+.|.+.|.+.+
T Consensus       600 tkGkAdp~~V~~lLke~L  617 (620)
T TIGR00134       600 LRGKADGKVVNRILRKKL  617 (620)
T ss_pred             hcCCCCHHHHHHHHHHHH
Confidence            554 99999999887755

The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional

Probab=97.22  E-value=0.0066  Score=74.32  Aligned_cols=170  Identities=16%  Similarity=0.234  Sum_probs=122.7

Q ss_pred             cccccchhhHHHHHHHHHh-CCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccCC------
Q psy17575         53 VVSNIMTEIADSMISAFLS-VGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKSQ------  124 (832)
Q Consensus        53 ~~~~~~~~~~~~l~~lF~~-iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~~------  124 (832)
                      ...-.++  .++..+.|.+ .||++.-|.-++.++.++.-+.+++... .    -++...+.|. .|...++..      
T Consensus       589 ~~~~~~~--~~~r~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~-~----~pk~aANWl~~El~~~Lne~~i~~~~  661 (771)
T PRK14703        589 AAALNPE--QRARFDRYLSELGLNEEDARTLARDPALAAFFEAALAAG-K----SPVQLANWVVNDLAGLLRDRELAALP  661 (771)
T ss_pred             cccCCHh--HHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcC-C----CHHHHHHHHHHHHHHHHhcCCCccCC
Confidence            3444444  6667777775 8999999999999999998888876532 1    2455555433 344443332      


Q ss_pred             -CccchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--c
Q psy17575        125 -SSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--Y  201 (832)
Q Consensus       125 -~~~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y  201 (832)
                       ...+...|+..|.+|+|.. .+....++-+-..+  -+.++.-++.|.+.+-.+++|+++|+++|++|.+.+.+-|  -
T Consensus       662 l~pe~LaeLv~lV~~g~IS~-~~AK~VL~~m~~~~--~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK  738 (771)
T PRK14703        662 FTPAALARLVALVDAGRIST-RIAKDVLAELAASG--GDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGK  738 (771)
T ss_pred             CCHHHHHHHHHHHHcCCccH-HHHHHHHHHHHhcC--CCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcch
Confidence             3468899999999999976 66677777665432  4788999999999776668999999999999999877644  1


Q ss_pred             ccchhhhHHHHHhhC-CCCChhhhHHHHHHHH
Q psy17575        202 RYNLGLVMQEVRTLL-KWADGKYIKSEVDVQV  232 (832)
Q Consensus       202 ~~n~g~ll~~vR~~L-kWAd~k~vK~~vD~~~  232 (832)
                      .--+|-|||+|=+.. ==|||+.|.+.|.+.+
T Consensus       739 ~kalgfLVGqVMK~tkGKAdP~~V~elLke~L  770 (771)
T PRK14703        739 TKLLGFFVGQVMRETGGKANPQQVRELLQKKL  770 (771)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            225778888885533 4589999998887643

>PRK08560 tyrosyl-tRNA synthetase; Validated

Probab=97.19  E-value=0.0023  Score=71.33  Aligned_cols=188  Identities=16%  Similarity=0.096  Sum_probs=110.2

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cc--ccccHHHHHHHHHHH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NP--EKEEEKFFTGIKDMV  378 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp--~r~~~e~~~~I~edL  378 (832)
                      .+.|++.++. +.+.+.=..=.|||.+||||+- ++.+|..-...|..+++=|-|.     |+  ..........+..++
T Consensus        18 ~~el~~~l~~-~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~   95 (329)
T PRK08560         18 EEELRELLES-KEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVF   95 (329)
T ss_pred             HHHHHHHHhC-CCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHH
Confidence            6777777753 3343333555678999999976 6777777666687777767664     21  123345666778888


Q ss_pred             HHcCCCcC--cccccchhHHH--HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCC
Q psy17575        379 QWLGYKPY--QITHSSDYFHQ--LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEG  454 (832)
Q Consensus       379 ~WLGl~pd--~~~~qSd~~~~--~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g  454 (832)
                      ..+|++|+  .+..||+....  |+..+..|       .|.++-.++.+....                    .|+..++
T Consensus        96 ~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~~--------------------~~~~~~~  148 (329)
T PRK08560         96 EALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMTI--------------------MGRRMEE  148 (329)
T ss_pred             HHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhhh--------------------hcccCCC
Confidence            88999998  46788886432  33333333       377777766642110                    0000000


Q ss_pred             CceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575        455 EATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC  534 (832)
Q Consensus       455 ~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~  534 (832)
                                  .+               .|  ...||.-+=|   |=.+.+.++|..|.|-..+-..-.-+++.++...
T Consensus       149 ------------~~---------------~g--~l~YP~lqaa---Dil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~  196 (329)
T PRK08560        149 ------------PD---------------VS--KLVYPLMQVA---DIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKK  196 (329)
T ss_pred             ------------CC---------------HH--HHHHHHHHHH---HHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCC
Confidence                        00               00  1124444322   2223467899999997655444455667788777


Q ss_pred             CCccccccc-CCCCc--ccchhH
Q psy17575        535 PVQWEYGRL-NVNYT--VVSKRK  554 (832)
Q Consensus       535 P~~~ef~hL-~l~gt--kLSKRk  554 (832)
                      |....-..| .++|.  ||||+.
T Consensus       197 p~~l~~~~l~~L~g~~~KMSKS~  219 (329)
T PRK08560        197 PVCIHTPLLTGLDGGGIKMSKSK  219 (329)
T ss_pred             ceEEEcCccCCCCCCCCCCcCCC
Confidence            754332333 45675  999997

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=97.04  E-value=0.0012  Score=81.70  Aligned_cols=95  Identities=23%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL  381 (832)
                      +++==+|.|||.|||||+++.++-..+||.  ..|.-++.+--+|.                ..-..++.+.|.++++.|
T Consensus        35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l  114 (805)
T PRK00390         35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL  114 (805)
T ss_pred             EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            444446999999999999999998888875  45666665544442                122457899999999999


Q ss_pred             CCC--cCccc--ccchhHHHHHHHHHHHHHcCCcccc
Q psy17575        382 GYK--PYQIT--HSSDYFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       382 Gl~--pd~~~--~qSd~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      |+.  |+..+  ...+|.........+|.++|++|.-
T Consensus       115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~  151 (805)
T PRK00390        115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRK  151 (805)
T ss_pred             CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence            985  44433  3334444444555689999999875

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=97.03  E-value=0.0013  Score=81.48  Aligned_cols=93  Identities=27%  Similarity=0.388  Sum_probs=66.6

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL  381 (832)
                      +++==+|.|||.|||||+++.++...+||.  ..|.-++..--+|.                ..-..++.+.+.++++.|
T Consensus        32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l  111 (842)
T TIGR00396        32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL  111 (842)
T ss_pred             EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            455558999999999999999999888875  45666666554442                112357889999999999


Q ss_pred             CCC--cCcccccchhHHHHHHHH----HHHHHcCCcccc
Q psy17575        382 GYK--PYQITHSSDYFHQLYEWA----VKLIKKGLAYVC  414 (832)
Q Consensus       382 Gl~--pd~~~~qSd~~~~~ye~A----~~Li~~G~AY~C  414 (832)
                      |+.  |+..+..++  +.|++..    .+|.++|++|.-
T Consensus       112 G~~~Dw~~~~~T~d--~~y~~~~~~~F~~L~~kGliy~~  148 (842)
T TIGR00396       112 GFSYDWDREIATCD--PEYYKWTQWIFLELFEKGLAYVK  148 (842)
T ss_pred             CCcccCCCCcccCC--HHHHHHHHHHHHHHHHCCCeEee
Confidence            975  555444433  3455444    589999998864

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated

Probab=97.01  E-value=0.011  Score=70.74  Aligned_cols=165  Identities=16%  Similarity=0.262  Sum_probs=119.6

Q ss_pred             HHHHHHHHh-CCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCC-------CccchHHHHH
Q psy17575         63 DSMISAFLS-VGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQ-------SSIHLPLLVK  134 (832)
Q Consensus        63 ~~l~~lF~~-iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~-------~~~~r~~l~~  134 (832)
                      ++..+.|.. .||++.-|.-++.++. +.-+.+++.. .    .-++...+.|.+....++..       ...+...|+.
T Consensus       456 ~~~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~----~~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~  529 (630)
T PRK04028        456 EEKVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-G----VDPTLIASTLENTLKELRREGVDVENITDEHIEEVFK  529 (630)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-C----CCHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHH
Confidence            345555654 8999999987777765 6666665432 1    23577777777765444432       2367888899


Q ss_pred             HHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh
Q psy17575        135 YIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT  214 (832)
Q Consensus       135 ~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~  214 (832)
                      .|.+|+|.. .+....++-+-+.+ .-+.++.-++.|.. .+|.++|+++|+++|++|.+.+...+ .-.+|.+||+|.+
T Consensus       530 ~~~~~~is~-~~ak~v~~~~~~~~-~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVMk  605 (630)
T PRK04028        530 LVSEGKIAK-EAIEEILKELAENP-GKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVMA  605 (630)
T ss_pred             HHHcCCccH-HHHHHHHHHHHhcC-CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHHH
Confidence            999999986 55666776444332 25788899999987 56899999999999999877666543 3368999999977


Q ss_pred             hCC-CCChhhhHHHHHHHHHhhcC
Q psy17575        215 LLK-WADGKYIKSEVDVQVLNLLG  237 (832)
Q Consensus       215 ~Lk-WAd~k~vK~~vD~~~l~lLG  237 (832)
                      ..+ =|||+.|.+.|.+.+-+.+|
T Consensus       606 ~tkGkAdp~~V~~llke~L~~~~~  629 (630)
T PRK04028        606 ELRGKADGKLVSEILREKLKEILN  629 (630)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHhc
Confidence            544 49999999999988776654

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase

Probab=96.98  E-value=0.0029  Score=68.78  Aligned_cols=171  Identities=15%  Similarity=0.146  Sum_probs=99.8

Q ss_pred             CCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cc-----------ccccHHHHHHHHHHHHHcCCC--cC-
Q psy17575        327 EPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NP-----------EKEEEKFFTGIKDMVQWLGYK--PY-  386 (832)
Q Consensus       327 sPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp-----------~r~~~e~~~~I~edL~WLGl~--pd-  386 (832)
                      .||| .|||||+.. +.++..-+..|..+++=|-|-     ||           .....+....|..++..+|+.  |+ 
T Consensus         7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k   85 (273)
T cd00395           7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ   85 (273)
T ss_pred             cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence            4889 799999988 777766666665655533221     33           122345667788889999998  76 


Q ss_pred             -cccccchhHH--HHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEec
Q psy17575        387 -QITHSSDYFH--QLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKIT  463 (832)
Q Consensus       387 -~~~~qSd~~~--~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~  463 (832)
                       .+..||+.+.  .+++.+..|-       |+++-.+|.+...                |.+..    ..+.       +
T Consensus        86 ~~i~~ns~~~~~~~~~~l~~~l~-------~~~~~~~l~~~~~----------------~k~r~----~~~~-------~  131 (273)
T cd00395          86 ATLFNNSDWPGPLAHIQFLRDLG-------KHVYVNYMERKTS----------------FQSRS----EEGI-------S  131 (273)
T ss_pred             eEEEEccccCCcccHHHHHHHHH-------ccCcHHHHHhChH----------------HHHHh----cCCC-------C
Confidence             4788998764  3555555443       6777777764311                11100    0010       0


Q ss_pred             ccCCCCCceEEEeeeCCCCCCCCceeEee---ccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC-CCCCCccc
Q psy17575        464 LEEGKQDPVAYRIKFLPHHRTGDSWCIYP---TYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD-IYCPVQWE  539 (832)
Q Consensus       464 ~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P---tY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~-~~~P~~~e  539 (832)
                      .     -.+                 .||   +||+-+.  ..-.+.++++-|.|-..+-..-.-+...++ ...|....
T Consensus       132 ~-----~~~-----------------~Yp~lQaaD~l~l--~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~  187 (273)
T cd00395         132 A-----TEF-----------------TYPPLQAADFLLL--NTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLT  187 (273)
T ss_pred             c-----hhh-----------------hhHHHHHHHHHHH--hcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEe
Confidence            0     000                 122   2222110  112567899999997666555556677775 45675444


Q ss_pred             cccc-CCCCcccchhHHH
Q psy17575        540 YGRL-NVNYTVVSKRKIA  556 (832)
Q Consensus       540 f~hL-~l~gtkLSKRk~~  556 (832)
                      ...| .++|.||||+...
T Consensus       188 ~p~l~~l~G~KMSKS~~~  205 (273)
T cd00395         188 IPLVTKLDGPKFGKSESG  205 (273)
T ss_pred             eccccCCCCCcCCCCCCC
Confidence            4444 4579999999753

Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=96.89  E-value=0.002  Score=79.63  Aligned_cols=90  Identities=21%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCC-----------------Cccc------------ccHHHHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDT-----------------NPEK------------EEEKFFTG  373 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDT-----------------Dp~r------------~~~e~~~~  373 (832)
                      +|.|||.|||||+++.++--.+||.  ..|.-++.+--+                 ++..            -..++.+.
T Consensus        46 pPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~  125 (800)
T PRK13208         46 PPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKK  125 (800)
T ss_pred             cCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999888875  456666653322                 3321            23467889


Q ss_pred             HHHHHHHcCCC--cCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        374 IKDMVQWLGYK--PYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       374 I~edL~WLGl~--pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      |.++++.||+.  |+..+..++  |.........+|.++|++|..
T Consensus       126 ~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~  170 (800)
T PRK13208        126 FRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRA  170 (800)
T ss_pred             HHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeec
Confidence            99999999975  545444333  222222334479999998865

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6

Probab=96.85  E-value=0.0036  Score=70.30  Aligned_cols=237  Identities=19%  Similarity=0.225  Sum_probs=105.3

Q ss_pred             HHHHHHhhhh--cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccccc-----------
Q psy17575        306 HDLLREHIKY--TGGKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEE-----------  367 (832)
Q Consensus       306 ~~~~~~hl~~--~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~-----------  367 (832)
                      .++++++.+.  .++.++.-=.=+|||..||||+|-++..++.++.     ..-++|+=-||-|+=|..           
T Consensus         9 ~~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~   88 (360)
T PF01921_consen    9 DEIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEK   88 (360)
T ss_dssp             HHHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCC
T ss_pred             HHHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHH
Confidence            3455444443  3567888888899999999999999998888765     235789999999987643           


Q ss_pred             --------------------HHHHHHHHHHHHHcCCCcCc----ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        368 --------------------EKFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       368 --------------------~e~~~~I~edL~WLGl~pd~----~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                                          +.|...+.+.|+.||+++..    ..|+|-.|+....   ..++         .+++|.+
T Consensus        89 ylg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i~---~aL~---------~~~~I~~  156 (360)
T PF01921_consen   89 YLGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQIR---TALE---------NRDEIRE  156 (360)
T ss_dssp             CTTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHHC---HHHH---------THHHHHH
T ss_pred             hcCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHHH---HHHH---------hHHHHHH
Confidence                                23555566667777775531    2334433332111   1111         1222221


Q ss_pred             c---------CCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEE-EecccCCCCCceEEEeeeCCCC-----CCCC-c
Q psy17575        424 F---------NPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRM-KITLEEGKQDPVAYRIKFLPHH-----RTGD-S  487 (832)
Q Consensus       424 ~---------~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~-K~~~~~~~~D~V~~Ri~~~~h~-----r~gd-~  487 (832)
                      .         ....+|.  .++.++        .|+.    .+..+ ..+   ...+-|.|++...-|.     +.|. +
T Consensus       157 Il~~~~~~~~~~~y~Pf--~piC~~--------cGri----~tt~v~~~d---~~~~~v~Y~c~~cG~~g~~~i~~g~gK  219 (360)
T PF01921_consen  157 ILNEYRGRERPETYSPF--LPICEK--------CGRI----DTTEVTEYD---PEGGTVTYRCEECGHEGEVDITGGNGK  219 (360)
T ss_dssp             HHHHHHHHT--TT--SE--EEEETT--------TEE------EEEEEEE-----SSSEEEEE--TTS---EEETTTT-EE
T ss_pred             HHHHhcCcCCCCCeeee--eeeccc--------cCCc----ccceeeEee---cCCCEEEEEecCCCCEEEEecCCCccc
Confidence            1         0000110  000000        1111    01110 111   1245677777333221     2221 1


Q ss_pred             --eeE-eeccceeeeeecCCCCcceeeecccccc---cchhHHHHH-HhcCCCCCCcccccccCCCCc-ccchhHHHHhh
Q psy17575        488 --WCI-YPTYDYTHCLCDSIEHITHSLCTKEFQS---RRSSYYWLC-NALDIYCPVQWEYGRLNVNYT-VVSKRKIAKLI  559 (832)
Q Consensus       488 --~~i-~PtY~fA~~VdD~l~gITHvlRg~E~~~---~~~~~~~L~-~aL~~~~P~~~ef~hL~l~gt-kLSKRk~~~lv  559 (832)
                        |.+ ||+       --+..||+-=-=|+||.+   |......|+ +.||..+|+...|.-+-+.|. ||||++++-  
T Consensus       220 L~WkvDW~m-------RW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~~--  290 (360)
T PF01921_consen  220 LQWKVDWPM-------RWAALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGNG--  290 (360)
T ss_dssp             E-HHHHHHH-------HHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------
T ss_pred             ccCCCcChh-------hhhhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCCc--
Confidence              333 333       223578888889999998   888888999 889999998877887777765 999999752  


Q ss_pred             hcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHH
Q psy17575        560 EENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR  594 (832)
Q Consensus       560 ~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~  594 (832)
                                   .|+....+ =++||.|+-|+..
T Consensus       291 -------------~t~~e~L~-~~~PE~lr~l~~~  311 (360)
T PF01921_consen  291 -------------ITPEEWLE-YAPPESLRYLMAR  311 (360)
T ss_dssp             ---------------HHHHHT-TS-HHHHHHHHHC
T ss_pred             -------------cCHHHHHH-hcCHHHHHHHHcc
Confidence                         36777665 3567777766654

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.

>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated

Probab=96.83  E-value=0.018  Score=67.03  Aligned_cols=160  Identities=17%  Similarity=0.244  Sum_probs=115.9

Q ss_pred             HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhccCC---------CccchHHH
Q psy17575         64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIKSQ---------SSIHLPLL  132 (832)
Q Consensus        64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k~~---------~~~~r~~l  132 (832)
                      +..+.|. ..||++.-|.-++.++.++.-+.+++.. +.    .++...+.|.+ +...++..         ...+...|
T Consensus       300 ~~~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~----~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~L  374 (474)
T PRK05477        300 AKRARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA----DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAEL  374 (474)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHH
Confidence            4455565 4999999999999998999988877543 22    34566665544 44333321         23678889


Q ss_pred             HHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhhhHH
Q psy17575        133 VKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGLVMQ  210 (832)
Q Consensus       133 ~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~  210 (832)
                      +..|.+|+|.+ .+....+.-+...  ..+.++.-++.|.+.+-.+++|++.|+++|++|.+.+.+-|  -.-.+|-|||
T Consensus       375 i~lv~~g~Is~-~~ak~vl~~~~~~--~~~~~~ii~~~gl~~isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lvG  451 (474)
T PRK05477        375 IKLIDDGTISG-KIAKEVFEEMLET--GGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLVG  451 (474)
T ss_pred             HHHHHcCCccH-HHHHHHHHHHHhc--CCCHHHHHHHcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHH
Confidence            99999999987 5567777655443  36789999999998544445999999999999999877652  1235788888


Q ss_pred             HHHh-hCCCCChhhhHHHHHHH
Q psy17575        211 EVRT-LLKWADGKYIKSEVDVQ  231 (832)
Q Consensus       211 ~vR~-~LkWAd~k~vK~~vD~~  231 (832)
                      +|-+ .=--|||+.|.+.+.+.
T Consensus       452 ~vMk~t~GkAdp~~v~~ll~e~  473 (474)
T PRK05477        452 QVMKATKGKANPKLVNELLKEK  473 (474)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHh
Confidence            8844 45569999999888653

>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit

Probab=96.64  E-value=0.034  Score=64.95  Aligned_cols=159  Identities=14%  Similarity=0.190  Sum_probs=112.5

Q ss_pred             HHHHH-HhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccC---------CCccchHHHH
Q psy17575         65 MISAF-LSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKS---------QSSIHLPLLV  133 (832)
Q Consensus        65 l~~lF-~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~---------~~~~~r~~l~  133 (832)
                      ..+.| ...||++.-|.-++.++.++.-+.+++.. +.    -++...+.|. .+...++.         -...|...|+
T Consensus       304 ~~~R~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li  378 (478)
T TIGR00133       304 KRIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKL-IG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELI  378 (478)
T ss_pred             HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHH
Confidence            33445 56899999999999999999999877543 21    2455555543 23222221         1346889999


Q ss_pred             HHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhc--ccccchhhhHHH
Q psy17575        134 KYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDK--RYRYNLGLVMQE  211 (832)
Q Consensus       134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~--ry~~n~g~ll~~  211 (832)
                      ..|.+|+|.. .+....+.-+-..  .-+.+++-++-|.+.+-.+++|++.|+++|++|.+++.+-  +-.--+|-|+|+
T Consensus       379 ~lv~~g~Is~-~~ak~vl~~~~~~--~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGq  455 (478)
T TIGR00133       379 KLIKEGKISG-KSAKQLIEEMLEN--GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQ  455 (478)
T ss_pred             HHHHcCCCcH-HHHHHHHHHHHhc--CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHH
Confidence            9999999986 5556666655443  2578899999999865555589999999999998877761  222257788888


Q ss_pred             HHh-hCCCCChhhhHHHHHHH
Q psy17575        212 VRT-LLKWADGKYIKSEVDVQ  231 (832)
Q Consensus       212 vR~-~LkWAd~k~vK~~vD~~  231 (832)
                      |=+ .=-=|||+.|.+.+.+.
T Consensus       456 vMk~t~GkA~p~~v~~~l~~~  476 (478)
T TIGR00133       456 VMKRTRGRANPQLVNEILKEM  476 (478)
T ss_pred             HHHHhCCCCCHHHHHHHHHHH
Confidence            744 45569999999887654

The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.0019  Score=79.11  Aligned_cols=92  Identities=30%  Similarity=0.433  Sum_probs=64.7

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEE---eccC-------------CCcccccHHHHHHHHHHHHHcC
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFL---RYDD-------------TNPEKEEEKFFTGIKDMVQWLG  382 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iL---RiDD-------------TDp~r~~~e~~~~I~edL~WLG  382 (832)
                      ++=-=|-|||.||+||.|+..+.-.+||.  ..|.=+|   =+|=             +||..-...+++.+.++|+.||
T Consensus        38 vl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG  117 (814)
T COG0495          38 VLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLG  117 (814)
T ss_pred             EEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhC
Confidence            34444999999999999999999888874  3343333   2332             2666667889999999999999


Q ss_pred             CC--cCcccccchhHHHHHHHH----HHHHHcCCcccc
Q psy17575        383 YK--PYQITHSSDYFHQLYEWA----VKLIKKGLAYVC  414 (832)
Q Consensus       383 l~--pd~~~~qSd~~~~~ye~A----~~Li~~G~AY~C  414 (832)
                      +.  |++...+.|  ..||.+.    .+|.++|++|.-
T Consensus       118 ~siDW~Ref~T~D--p~Yyk~~QW~F~kL~ekGL~y~~  153 (814)
T COG0495         118 FSIDWRREFATCD--PEYYKWIQWQFLKLYEKGLAYRK  153 (814)
T ss_pred             CccccccceecCC--ccHHHHHHHHHHHHHHCCCEEec
Confidence            75  554433333  2245443    479999999975

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=96.54  E-value=0.0048  Score=77.33  Aligned_cols=93  Identities=20%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEecc----------------------CCCccc-------ccHH
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYD----------------------DTNPEK-------EEEK  369 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiD----------------------DTDp~r-------~~~e  369 (832)
                      ++==||.+||.||||||++.++--.+||.  ..|.-++.+=                      +++++.       -..+
T Consensus        53 i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~  132 (912)
T PRK05743         53 LHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALE  132 (912)
T ss_pred             EeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHH
Confidence            33447999999999999999998888865  3455554332                      333332       2345


Q ss_pred             HHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCccc
Q psy17575        370 FFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       370 ~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~  413 (832)
                      +.+.+.++++.||+  +|+..+...+  |.........+|.++|+.|.
T Consensus       133 ~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~  180 (912)
T PRK05743        133 QVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK  180 (912)
T ss_pred             HHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence            67899999999999  7876554443  22222334457999999887

>PLN02563 aminoacyl-tRNA ligase

Probab=96.50  E-value=0.0061  Score=76.58  Aligned_cols=95  Identities=22%  Similarity=0.303  Sum_probs=67.1

Q ss_pred             eEEeeCCCCCCc-CchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHH
Q psy17575        320 VRTRFPPEPNGI-LHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQW  380 (832)
Q Consensus       320 v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~W  380 (832)
                      +++=-+|-|||. |||||+++.++...+||.  ..|.-+|.+=-+|                |.....++++.+.+.++.
T Consensus       113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~  192 (963)
T PLN02563        113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS  192 (963)
T ss_pred             EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence            455556999996 999999999999988875  4566666655444                222345788999999999


Q ss_pred             cCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        381 LGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       381 LGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ||+  +|+..+..++  |...-+....+|.++|++|.-
T Consensus       193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~  230 (963)
T PLN02563        193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQA  230 (963)
T ss_pred             hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEee
Confidence            995  5665544443  332223344579999999964

>PLN02751 glutamyl-tRNA(Gln) amidotransferase

Probab=96.48  E-value=0.047  Score=64.60  Aligned_cols=160  Identities=16%  Similarity=0.212  Sum_probs=114.7

Q ss_pred             HHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccC---------CCccchHHHH
Q psy17575         64 SMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKS---------QSSIHLPLLV  133 (832)
Q Consensus        64 ~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~---------~~~~~r~~l~  133 (832)
                      +..+.|...||++.-|.-++.++.++.-+.+++.. +.    -++..++.|. .|...++.         -..++...|+
T Consensus       368 ~~~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~----~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi  442 (544)
T PLN02751        368 AKRRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA----DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELI  442 (544)
T ss_pred             HHHHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC----CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHH
Confidence            35566788999999999999999999888877653 21    2455554433 34333322         1246789999


Q ss_pred             HHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc---cccchhhhHH
Q psy17575        134 KYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR---YRYNLGLVMQ  210 (832)
Q Consensus       134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r---y~~n~g~ll~  210 (832)
                      ..|.+|+|....- ...+.=+-..  .-+.++.-++-|.+..-.+++|+++|+++|++|.+.+.+-|   -+ -+|-|||
T Consensus       443 ~li~~g~Is~~~A-K~vl~~~~~~--~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k-~~g~lvG  518 (544)
T PLN02751        443 ASIKDGTISGKIG-KEILPELLAK--GGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTK-LQGFFAG  518 (544)
T ss_pred             HHHHcCCccHHHH-HHHHHHHHhC--CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHH-HHHHHHH
Confidence            9999999987443 4444433322  25788999999998654588999999999999999876644   23 4788888


Q ss_pred             HHHhhCC-CCChhhhHHHHHHHH
Q psy17575        211 EVRTLLK-WADGKYIKSEVDVQV  232 (832)
Q Consensus       211 ~vR~~Lk-WAd~k~vK~~vD~~~  232 (832)
                      +|-+..+ =|||+.|...+.+.+
T Consensus       519 qVMK~tkGkAnp~~v~~iL~e~L  541 (544)
T PLN02751        519 QVMKASKGKANPGLLNKILMEKL  541 (544)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHh
Confidence            8855444 599999999887654

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=96.46  E-value=0.0061  Score=77.09  Aligned_cols=95  Identities=26%  Similarity=0.235  Sum_probs=68.1

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCccc-------------c------------------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPEK-------------E------------------  366 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~r-------------~------------------  366 (832)
                      +++==||.|||.||||||++.++--.+||.  ..|.-+|.+--+|..-             .                  
T Consensus        63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~  142 (995)
T PTZ00419         63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW  142 (995)
T ss_pred             EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence            344447999999999999999999888875  5677777776666320             0                  


Q ss_pred             --cHHHHHHHHHHHHHcCC--CcCccccc--chhHHHHHHHHHHHHHcCCcccc
Q psy17575        367 --EEKFFTGIKDMVQWLGY--KPYQITHS--SDYFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       367 --~~e~~~~I~edL~WLGl--~pd~~~~q--Sd~~~~~ye~A~~Li~~G~AY~C  414 (832)
                        ..++.+.|.++++.||+  +|+..++.  .+|....+....+|.++|+.|..
T Consensus       143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~  196 (995)
T PTZ00419        143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRD  196 (995)
T ss_pred             HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence              25678889999999995  56554433  33444444555689999999875

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase

Probab=96.43  E-value=0.0098  Score=64.50  Aligned_cols=205  Identities=15%  Similarity=0.138  Sum_probs=120.3

Q ss_pred             CCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccHHHHHHHHHHHHHcCCC--cC-
Q psy17575        327 EPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEEKFFTGIKDMVQWLGYK--PY-  386 (832)
Q Consensus       327 sPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~e~~~~I~edL~WLGl~--pd-  386 (832)
                      .||| .|||||...++ ++..-...|..+++=|=|.     ||.     |      +.......|..++..+|+.  |+ 
T Consensus         8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k   86 (269)
T cd00805           8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK   86 (269)
T ss_pred             CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence            4789 99999999765 5544455576766666662     442     1      2345667788899999986  76 


Q ss_pred             -cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEeccc
Q psy17575        387 -QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLE  465 (832)
Q Consensus       387 -~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~  465 (832)
                       .+..||+..+.  .+...+++    +-|+|+-.++.+...                |.+..+.  ..+.       +  
T Consensus        87 ~~i~~~s~~~~~--l~~~~~l~----l~~~~~~~~l~~~~~----------------~k~r~~~--~~~~-------~--  133 (269)
T cd00805          87 AKFVNNSDWLLS--LYTLDFLR----LGKHFTVNRMLRRDA----------------VKVRLEE--EEGI-------S--  133 (269)
T ss_pred             eEEEEchHhhcc--CCHHHHHH----HHhhCcHHHHHHHHH----------------HHHHHhc--CCCC-------c--
Confidence             57889987664  12233332    558888888875311                1000000  0000       0  


Q ss_pred             CCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccccccc-C
Q psy17575        466 EGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-N  544 (832)
Q Consensus       466 ~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-~  544 (832)
                                        .+  -.+||..+=|..   ...+.++++.|.|-..+-..-.-+.+.++...|+......| .
T Consensus       134 ------------------~~--~~~YP~lQaaDi---~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~  190 (269)
T cd00805         134 ------------------FS--EFIYPLLQAYDF---VYLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTG  190 (269)
T ss_pred             ------------------HH--HHHHHHHHHhhH---HHHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccC
Confidence                              00  011443322211   12455899999998777666677778888777765444444 4


Q ss_pred             CCCcccchhHHHHh-hhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhC
Q psy17575        545 VNYTVVSKRKIAKL-IEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMG  596 (832)
Q Consensus       545 l~gtkLSKRk~~~l-v~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG  596 (832)
                      ++|.||||+..... |     .--|+|.  ++...-++-+++ .+.+|+..+-
T Consensus       191 l~G~KMSKS~~~~~~i-----~l~dsp~--~i~~Ki~~a~~~-~v~~~l~~~~  235 (269)
T cd00805         191 LDGGKMSKSEGNAIWD-----PVLDSPY--DVYQKIRNAFDP-DVLEFLKLFT  235 (269)
T ss_pred             CCCCcccCCCCCcccc-----cCCCCHH--HHHHHHHcCCcH-HHHHHHHHHH
Confidence            67999999985432 1     1224443  566666667777 4466666554

Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=96.42  E-value=0.0077  Score=75.11  Aligned_cols=94  Identities=21%  Similarity=0.130  Sum_probs=66.0

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC-----------------------cc----------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN-----------------------PE----------  364 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD-----------------------p~----------  364 (832)
                      +++==||.|||.|||||+++..+--.+||.  ..|.-+|++=-.|                       +.          
T Consensus        39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~  118 (861)
T TIGR00392        39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR  118 (861)
T ss_pred             EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence            455568999999999999999999888875  4566665543332                       21          


Q ss_pred             cccHHHHHHHHHHHHHcCC--CcCcccccchhHHHHHHH----HHHHHHcCCccccC
Q psy17575        365 KEEEKFFTGIKDMVQWLGY--KPYQITHSSDYFHQLYEW----AVKLIKKGLAYVCH  415 (832)
Q Consensus       365 r~~~e~~~~I~edL~WLGl--~pd~~~~qSd~~~~~ye~----A~~Li~~G~AY~C~  415 (832)
                      .-..++.+.+.++++.||+  +|+..+...+  ..|++.    ..+|.++|++|...
T Consensus       119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~--p~y~~~~~~~f~~l~~~gliyr~~  173 (861)
T TIGR00392       119 EFALKQIEEQREQFQRLGVWGDWENPYKTMD--PSYEESQWWLFKEAHEKGLLYRGL  173 (861)
T ss_pred             HHHHHHHHHHHHHHHHhCceecCCCCcCcCC--HHHHHHHHHHHHHHHHCCCEeecc
Confidence            1123578889999999998  6776655444  333333    34799999999764

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=96.41  E-value=0.0073  Score=75.46  Aligned_cols=90  Identities=26%  Similarity=0.279  Sum_probs=64.2

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------cc--------------cHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------KE--------------EEKF  370 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------r~--------------~~e~  370 (832)
                      ||.+||.|||||+.+..+--.+||.  ..|.-+|.+--||..                  +.              ..++
T Consensus        44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~  123 (874)
T PRK05729         44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES  123 (874)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence            7999999999999999998888875  457777766666632                  00              3567


Q ss_pred             HHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        371 FTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       371 ~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ...|.++++.||+  +|++.++..|  +.........+|.++|+.|.-
T Consensus       124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~  171 (874)
T PRK05729        124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRG  171 (874)
T ss_pred             HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeec
Confidence            8899999999996  4555544443  222223334579999998864

>TIGR00422 valS valyl-tRNA synthetase

Probab=96.33  E-value=0.009  Score=74.51  Aligned_cols=90  Identities=31%  Similarity=0.326  Sum_probs=64.2

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------cc--------------cHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------KE--------------EEKF  370 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------r~--------------~~e~  370 (832)
                      ||.+||.|||||+++.++--.+||-  ..|.-+|++--+|..                  +.              ..+|
T Consensus        41 pPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~  120 (861)
T TIGR00422        41 PPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEES  120 (861)
T ss_pred             CCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHH
Confidence            7999999999999999999888875  567777777666632                  00              3467


Q ss_pred             HHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        371 FTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       371 ~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ...|.++++.||+  +|+..++..|  |.........+|.++|+.|..
T Consensus       121 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~  168 (861)
T TIGR00422       121 GGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRG  168 (861)
T ss_pred             HHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeec
Confidence            8899999999995  4555444443  222222334479999999875

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=96.28  E-value=0.009  Score=75.91  Aligned_cols=94  Identities=24%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc---------c------------------------
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE---------K------------------------  365 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~---------r------------------------  365 (832)
                      ++==||.+||.|||||+++.++--.+||.  ..|.-+|.+--+|.-         +                        
T Consensus        52 i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~  131 (1052)
T PRK14900         52 IVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWA  131 (1052)
T ss_pred             EecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHH
Confidence            33347999999999999999999888875  456666655555421         0                        


Q ss_pred             ccHHHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        366 EEEKFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       366 ~~~e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      -..++.+.|.++++.||+  +|+..++..+  |.........+|.++|+.|..
T Consensus       132 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~  184 (1052)
T PRK14900        132 WKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYRE  184 (1052)
T ss_pred             HHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence            024567889999999995  5655443333  333333444579999999974

>PLN02843 isoleucyl-tRNA synthetase

Probab=96.28  E-value=0.0087  Score=75.52  Aligned_cols=92  Identities=21%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             eeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC-----------------------cccc-------cHHH
Q psy17575        323 RFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN-----------------------PEKE-------EEKF  370 (832)
Q Consensus       323 RFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD-----------------------p~r~-------~~e~  370 (832)
                      ==||.+||.||||||.+.++--.++|.  ..|.-++.+--+|                       |..-       ..++
T Consensus        38 ~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~  117 (974)
T PLN02843         38 DGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKT  117 (974)
T ss_pred             CCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHH
Confidence            347999999999999999998888875  3455444433332                       2211       3456


Q ss_pred             HHHHHHHHHHcCC--CcCcccccch-hHH-HHHHHHHHHHHcCCcccc
Q psy17575        371 FTGIKDMVQWLGY--KPYQITHSSD-YFH-QLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       371 ~~~I~edL~WLGl--~pd~~~~qSd-~~~-~~ye~A~~Li~~G~AY~C  414 (832)
                      .+.+.++++.||+  +|+..+...+ .+. .......+|.++|+.|.-
T Consensus       118 ~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr~  165 (974)
T PLN02843        118 VDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRG  165 (974)
T ss_pred             HHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence            7788999999998  7876655443 222 222334479999999863

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.012  Score=65.03  Aligned_cols=90  Identities=22%  Similarity=0.277  Sum_probs=69.5

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------Cc-ccccHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NP-EKEEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH  396 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp-~r~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~  396 (832)
                      -|||.|||||--.|+.||...+..++.|+.=|-|.       ++ +.....+...+..++-.+||+|++  ++.||+.-+
T Consensus        13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e   92 (314)
T COG0180          13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE   92 (314)
T ss_pred             CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence            48999999999999999999888777777777775       22 134556777777788889999995  788998654


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKGF  424 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~~  424 (832)
                       +++.+-.|-       |..+--+++++
T Consensus        93 -~~eLa~~l~-------~~~~~gel~r~  112 (314)
T COG0180          93 -HAELAWLLS-------CVTNFGELERM  112 (314)
T ss_pred             -HHHHHHHHH-------ccCcHHHHHhh
Confidence             777766543       78787788765

>PLN02943 aminoacyl-tRNA ligase

Probab=96.24  E-value=0.011  Score=74.57  Aligned_cols=95  Identities=26%  Similarity=0.296  Sum_probs=67.1

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc-----------------------cc--------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE-----------------------KE--------  366 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~-----------------------r~--------  366 (832)
                      +++=-||.+||.|||||+++..+--.+||.  ..|.-+|.+--+|..                       |+        
T Consensus        91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~  170 (958)
T PLN02943         91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE  170 (958)
T ss_pred             EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence            444557999999999999999999888875  567777666555522                       11        


Q ss_pred             -cHHHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        367 -EEKFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       367 -~~e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                       ..++...|.+.++.||+  +|+..++..|  |.........+|.++|+.|..
T Consensus       171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~  223 (958)
T PLN02943        171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQG  223 (958)
T ss_pred             HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence             13567899999999997  5666555444  222222334579999999876

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=96.03  E-value=0.013  Score=70.20  Aligned_cols=91  Identities=32%  Similarity=0.287  Sum_probs=57.3

Q ss_pred             eCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEec---cCC-----------------------Cccc-------ccH
Q psy17575        324 FPPEPNGILHIGHAKAININFGYAAA--HNGICFLRY---DDT-----------------------NPEK-------EEE  368 (832)
Q Consensus       324 FaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRi---DDT-----------------------Dp~r-------~~~  368 (832)
                      =||.+||.||+||+++..+--.+||.  -.|.-++..   |.+                       .++.       -..
T Consensus        30 ~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~  109 (601)
T PF00133_consen   30 PPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAE  109 (601)
T ss_dssp             ---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhh
Confidence            47999999999999999999888865  456655532   222                       1110       134


Q ss_pred             HHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        369 KFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       369 e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ++.+.|.++++.||+  +|+..+...+  |.........+|.++|+.|.-
T Consensus       110 ~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~  159 (601)
T PF00133_consen  110 EFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRG  159 (601)
T ss_dssp             HHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred             hhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEee
Confidence            677889999999996  5666544433  222233334579999999974

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=95.92  E-value=0.025  Score=69.75  Aligned_cols=90  Identities=28%  Similarity=0.317  Sum_probs=65.2

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc-----------------------cc---------cHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE-----------------------KE---------EEKF  370 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~-----------------------r~---------~~e~  370 (832)
                      ||.+||-||||||....+--.++|.  -.|.-+|=+--||..                       |+         ++++
T Consensus        41 PPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~  120 (877)
T COG0525          41 PPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEES  120 (877)
T ss_pred             CCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHH
Confidence            6999999999999999988888875  457666655555532                       21         3678


Q ss_pred             HHHHHHHHHHcCCC--cCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        371 FTGIKDMVQWLGYK--PYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       371 ~~~I~edL~WLGl~--pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ...|.+.++.||+.  |+..++..|  +.....+...+|.++|..|+-
T Consensus       121 ~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~  168 (877)
T COG0525         121 GGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRG  168 (877)
T ss_pred             HHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeec
Confidence            88999999999976  444433333  333444556689999999985

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=95.89  E-value=0.012  Score=74.21  Aligned_cols=95  Identities=26%  Similarity=0.294  Sum_probs=59.6

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCC----------------------------C----
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDT----------------------------N----  362 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDT----------------------------D----  362 (832)
                      +++==+|.|||.|||||+++.++--.+||.  ..|.=+|.   +|.|                            .    
T Consensus        28 ~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i  107 (938)
T TIGR00395        28 FLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREEL  107 (938)
T ss_pred             EEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHH
Confidence            334446999999999999999998877764  33444443   2222                            1    


Q ss_pred             -----cccccHHHHHHHHHHHHHcCCC--cCcccccch-hHHHHHH-HHHHHHHcCCcccc
Q psy17575        363 -----PEKEEEKFFTGIKDMVQWLGYK--PYQITHSSD-YFHQLYE-WAVKLIKKGLAYVC  414 (832)
Q Consensus       363 -----p~r~~~e~~~~I~edL~WLGl~--pd~~~~qSd-~~~~~ye-~A~~Li~~G~AY~C  414 (832)
                           |..-...|...|.++++.||+.  |++.+...+ ++...-+ ...+|.++|+.|.-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g  168 (938)
T TIGR00395       108 LKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKG  168 (938)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHHHCCCEecC
Confidence                 1111245566899999999975  555443333 2222222 23479999999864

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>cd02156 nt_trans nucleotidyl transferase superfamily

Probab=95.82  E-value=0.029  Score=51.91  Aligned_cols=40  Identities=53%  Similarity=0.815  Sum_probs=30.6

Q ss_pred             EeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccc
Q psy17575        322 TRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKE  366 (832)
Q Consensus       322 tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~  366 (832)
                      +.|++++ |++|+||...+--    |...+.++++.|.|.++...
T Consensus         2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~~   41 (105)
T cd02156           2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVKV   41 (105)
T ss_pred             EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCcccc
Confidence            5789999 9999999997433    33334789999999887653

nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6

Probab=95.78  E-value=0.0066  Score=66.15  Aligned_cols=174  Identities=16%  Similarity=0.124  Sum_probs=99.0

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc----cccHHHHHHHHHH--HHHcCCCcC--cccccch
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE----KEEEKFFTGIKDM--VQWLGYKPY--QITHSSD  393 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~----r~~~e~~~~I~ed--L~WLGl~pd--~~~~qSd  393 (832)
                      .|||.|||||+-+. .++..-...|..+++=|-|.     |+.    |........+.++  +-.+|++|+  .+..||+
T Consensus        13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~   91 (292)
T PF00579_consen   13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD   91 (292)
T ss_dssp             ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred             CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence            47899999988766 44555555888888877664     333    3334455555555  668899997  5788998


Q ss_pred             hHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceE
Q psy17575        394 YFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVA  473 (832)
Q Consensus       394 ~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~  473 (832)
                      ..... ++...|..       .++.-++.++                ..+..+ ..++.+++..     +          
T Consensus        92 ~~~~~-~~~~~l~~-------~~~~~~l~~~----------------~~~~~~-~~~~~~~~~~-----~----------  131 (292)
T PF00579_consen   92 WPEHM-ELWWFLSD-------VARLFSLNRM----------------LRFKDV-KKRLKNGEGI-----S----------  131 (292)
T ss_dssp             HHCHH-HHHHHHHH-------HHBHHHHHHH----------------HHHHHH-HHHHSSTTTS-----B----------
T ss_pred             ccccc-chhhhhcc-------cccccchhhh----------------hhhccc-ccccccccCc-----c----------
Confidence            76443 55544442       2232233321                111111 0111111000     0          


Q ss_pred             EEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC----CCCcccccccC-CCCc
Q psy17575        474 YRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY----CPVQWEYGRLN-VNYT  548 (832)
Q Consensus       474 ~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~----~P~~~ef~hL~-l~gt  548 (832)
                                .  ...+||..+   +.|=...+.++++.|.|-..+-..-.-+.+.++..    .|.......|+ ++|+
T Consensus       132 ----------~--~~~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~  196 (292)
T PF00579_consen  132 ----------L--GEFSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ  196 (292)
T ss_dssp             ----------H--HHHHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS
T ss_pred             ----------e--eeEEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc
Confidence                      0  012355544   23333456679999999876655555677778876    77655555554 4788


Q ss_pred             -ccchhHHH
Q psy17575        549 -VVSKRKIA  556 (832)
Q Consensus       549 -kLSKRk~~  556 (832)
                       ||||+..+
T Consensus       197 ~KMSKS~~n  205 (292)
T PF00579_consen  197 KKMSKSDPN  205 (292)
T ss_dssp             SBTTTTTTG
T ss_pred             cccCccCCc
Confidence             99999876

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=95.77  E-value=0.02  Score=72.34  Aligned_cols=91  Identities=21%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             eeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc---------------------------------ccc
Q psy17575        323 RFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE---------------------------------KEE  367 (832)
Q Consensus       323 RFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~---------------------------------r~~  367 (832)
                      ==||.|||.||+||+++..+--.+||.  ..|.-+++.=-.|-.                                 .-.
T Consensus        47 ~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~  126 (975)
T PRK06039         47 DGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESV  126 (975)
T ss_pred             CCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHH
Confidence            337999999999999999999888875  456666654433210                                 123


Q ss_pred             HHHHHHHHHHHHHcC--CCcCcccccchhHHHHHHH----HHHHHHcCCccccC
Q psy17575        368 EKFFTGIKDMVQWLG--YKPYQITHSSDYFHQLYEW----AVKLIKKGLAYVCH  415 (832)
Q Consensus       368 ~e~~~~I~edL~WLG--l~pd~~~~qSd~~~~~ye~----A~~Li~~G~AY~C~  415 (832)
                      .+|.+.+.+.++.||  ++|+..+...+  ..|++.    ..+|.++|++|...
T Consensus       127 ~~~~~~~~~~~~rlG~~~Dw~~~y~T~d--~~y~~~v~~~F~~l~~kGliyr~~  178 (975)
T PRK06039        127 LRYTDEWEEYTERLGRWVDFDNPYKTLD--NEYMESVWWALKQLYDKGLLYKGY  178 (975)
T ss_pred             HHHHHHHHHHHHHhCceeecCCCcCcCC--HHHHHHHHHHHHHHHHCCCEEecc
Confidence            467888999999999  56776655544  333333    34799999999753

>PLN02381 valyl-tRNA synthetase

Probab=95.73  E-value=0.027  Score=71.76  Aligned_cols=95  Identities=25%  Similarity=0.245  Sum_probs=66.0

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------------c--------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------------K--------  365 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------------r--------  365 (832)
                      +++==||.+||.|||||+++..+--.+||.  ..|.-+|.+=-+|..                        |        
T Consensus       131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~  210 (1066)
T PLN02381        131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW  210 (1066)
T ss_pred             EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence            455568999999999999999999888875  456666655444421                        0        


Q ss_pred             -ccHHHHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        366 -EEEKFFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       366 -~~~e~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                       -..+|.+.|.+.++.||+  +|+..++..+  |.........+|.++|+.|.-
T Consensus       211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~  264 (1066)
T PLN02381        211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD  264 (1066)
T ss_pred             HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence             024667889999999995  5666655554  222222334579999999976

>PRK05912 tyrosyl-tRNA synthetase; Validated

Probab=95.69  E-value=0.13  Score=59.17  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC----C-Ccc-c----------ccH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD----T-NPE-K----------EEE  368 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T-Dp~-r----------~~~  368 (832)
                      .+.|.++++  +.+.+.=..=.|||. |||||+. .+.++..-+..|.+.++=|=|    | ||. |          +..
T Consensus        22 ~~~l~~~l~--~~~~~vy~G~dPTg~slHlGhlv-~l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~   98 (408)
T PRK05912         22 EEELEEKLA--KEPLRIYLGFDPTAPSLHLGHLV-PLLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA   98 (408)
T ss_pred             HHHHHHHhh--CCCCEEEEeecCCCCCccHHhHH-HHHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence            556667776  333433344457895 9999998 577777777777777776655    3 454 2          123


Q ss_pred             HHHHHHHHHHHHcCCCcCc----ccccchhHHH
Q psy17575        369 KFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQ  397 (832)
Q Consensus       369 e~~~~I~edL~WLGl~pd~----~~~qSd~~~~  397 (832)
                      .+.+.|.+.+ +.|++|++    +..||+.+..
T Consensus        99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~  130 (408)
T PRK05912         99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK  130 (408)
T ss_pred             HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence            4555565555 77888875    7889987653

>PRK13354 tyrosyl-tRNA synthetase; Provisional

Probab=95.67  E-value=0.2  Score=57.69  Aligned_cols=89  Identities=17%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC-C----Ccc-----c------ccH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD-T----NPE-----K------EEE  368 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD-T----Dp~-----r------~~~  368 (832)
                      .+.|.+++. .+++++.=..=.|||. |||||+-. +..+..-+..|.+.++=|-| |    ||.     |      +..
T Consensus        21 ~~~l~~~~~-~~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~   98 (410)
T PRK13354         21 EEKLRKSLK-EGKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQ   98 (410)
T ss_pred             HHHHHHHHh-cCCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHH
Confidence            555666543 3445555556678984 99999666 55566666777777666632 3    554     2      233


Q ss_pred             HHHHHHHHHHHHcCCCcC--cccccchhHHH
Q psy17575        369 KFFTGIKDMVQWLGYKPY--QITHSSDYFHQ  397 (832)
Q Consensus       369 e~~~~I~edL~WLGl~pd--~~~~qSd~~~~  397 (832)
                      ++...|...+.. |++++  .+..+|+.+..
T Consensus        99 ~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~  128 (410)
T PRK13354         99 HNAKTYTEQIFK-LFDFEKTEIVNNSDWLSK  128 (410)
T ss_pred             HHHHHHHHHHHH-hcCccceEEEECcccccc
Confidence            556666666544 77766  56788887653

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=95.58  E-value=0.028  Score=72.29  Aligned_cols=90  Identities=19%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc------------------------c---------ccHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE------------------------K---------EEEK  369 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~------------------------r---------~~~e  369 (832)
                      ||.+||.||+|||.+-.+--.+||.  ..|.-+++.--+|-.                        +         -..+
T Consensus       110 PPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~  189 (1205)
T PTZ00427        110 PPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLK  189 (1205)
T ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHH
Confidence            6999999999999999999888875  467777777666521                        0         0235


Q ss_pred             HHHHHHHHHHHcC--CCcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        370 FFTGIKDMVQWLG--YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       370 ~~~~I~edL~WLG--l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      |.+.+.+.++.||  ++|+..+...+  |.........+|.++|+.|.-
T Consensus       190 ~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr~  238 (1205)
T PTZ00427        190 YSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKS  238 (1205)
T ss_pred             HHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence            6778899999999  78887655544  333333334579999999864

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed

Probab=95.58  E-value=0.016  Score=64.78  Aligned_cols=88  Identities=22%  Similarity=0.200  Sum_probs=53.6

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc--cccHHHHHHHHHHHHHcCCCcC--cccccchhHHHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE--KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFHQL  398 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~--r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~~~  398 (832)
                      .|||.|||||...++-+|..-+.. ..+++=|-|.    ++.  .+..++...+..++-.+|++|+  .+..||+..+ +
T Consensus         9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~   86 (333)
T PRK00927          9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H   86 (333)
T ss_pred             CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence            478999999999788887544432 3444444432    221  1233455566777778999998  4678998543 4


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      .+++-.       ..|..+-.++++
T Consensus        87 ~el~~~-------l~~~~~~~~l~r  104 (333)
T PRK00927         87 AELAWI-------LNCITPLGELER  104 (333)
T ss_pred             HHHHHH-------HHhhhhHHHHHh
Confidence            444433       245555555543

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=95.57  E-value=0.022  Score=71.84  Aligned_cols=95  Identities=19%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC-------------------------ccc-------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN-------------------------PEK-------  365 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD-------------------------p~r-------  365 (832)
                      ++.==||.+||.||||||++-++--.+||.  ..|.-++.+=-.|                         +..       
T Consensus        57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~  136 (961)
T PRK13804         57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE  136 (961)
T ss_pred             EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence            334447999999999999999998888875  3454444332222                         111       


Q ss_pred             ccHHHHHHHHHHHHHcCCC--cCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        366 EEEKFFTGIKDMVQWLGYK--PYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       366 ~~~e~~~~I~edL~WLGl~--pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      -..++++.+.++++.||+-  |+..+...+  |.........+|.++|++|.-
T Consensus       137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr~  189 (961)
T PRK13804        137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYRG  189 (961)
T ss_pred             HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeC
Confidence            1235677889999999975  766555443  222222334479999999874

>KOG0436|consensus

Probab=95.33  E-value=0.047  Score=61.95  Aligned_cols=262  Identities=20%  Similarity=0.203  Sum_probs=140.9

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCccc------------ccHHHHHHHHHHHHH----cCCCcCcc
Q psy17575        327 EPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPEK------------EEEKFFTGIKDMVQW----LGYKPYQI  388 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~r------------~~~e~~~~I~edL~W----LGl~pd~~  388 (832)
                      -||-..||||+.++++.-.+||.  ..|.-..=..-||.--            .-++..+.|-....-    +|+..++.
T Consensus        49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~F  128 (578)
T KOG0436|consen   49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKF  128 (578)
T ss_pred             ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhhe
Confidence            36788999999999999999986  5688777777787432            234555555554444    47776654


Q ss_pred             cccch--hHHHHHHHHHHHHHcCCcccc------------CCCHHHHhccCCC-----------CCCCCCCChhHh----
Q psy17575        389 THSSD--YFHQLYEWAVKLIKKGLAYVC------------HQKSDEMKGFNPL-----------PSPWRERPVEEN----  439 (832)
Q Consensus       389 ~~qSd--~~~~~ye~A~~Li~~G~AY~C------------~Cs~eel~~~~~~-----------~~~~R~r~~ee~----  439 (832)
                      ....|  +.....++-..+.++|..|.-            |-+..++.+...+           ++.||.   |+|    
T Consensus       129 IRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k---E~NY~Fr  205 (578)
T KOG0436|consen  129 IRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK---EDNYFFR  205 (578)
T ss_pred             eecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec---ccceeee
Confidence            33333  333445555667888988852            2233333322111           112221   111    


Q ss_pred             HHHHHHHHcCcccCCCceEEEEec----------ccCCCCCceEEEeeeC-----CCCCCCCc-eeE-------------
Q psy17575        440 VKLFEAMKNGLIDEGEATLRMKIT----------LEEGKQDPVAYRIKFL-----PHHRTGDS-WCI-------------  490 (832)
Q Consensus       440 L~~f~~m~~g~~~~g~~~lR~K~~----------~~~~~~D~V~~Ri~~~-----~h~r~gd~-~~i-------------  490 (832)
                      |..|++-....+...+   ||-.|          ...+..|+-+-|-+..     |-|  ||+ -.|             
T Consensus       206 LSkfqk~l~d~lrkNP---~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP--~ddsQtIYVWfDAL~nYiSv  280 (578)
T KOG0436|consen  206 LSKFQKPLEDHLRKNP---RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP--GDDSQTIYVWFDALLNYISV  280 (578)
T ss_pred             HHhhhhHHHHHHhcCC---CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCC--CCCcceEEEeHHHHhhHHHh
Confidence            2333332222222211   01111          0112345544442110     111  221 111             


Q ss_pred             --eec--cceeeeeecCCCCcceeeecccccccchhHH-HHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCcc
Q psy17575        491 --YPT--YDYTHCLCDSIEHITHSLCTKEFQSRRSSYY-WLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIV  564 (832)
Q Consensus       491 --~Pt--Y~fA~~VdD~l~gITHvlRg~E~~~~~~~~~-~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v  564 (832)
                        ||-  -++-..+.=---.-.||| |+|.+.-+..|- .+.-+.|++.|.++- .+|.-.+|.||||+-++.      |
T Consensus       281 ig~~~~~~N~k~~ls~~wPat~HvI-GKDIlrFHavYWPafLmaAGlplP~~I~vHghwt~ngmKMsKSLGNv------v  353 (578)
T KOG0436|consen  281 IGYPNKQQNLKTALSFGWPATLHVI-GKDILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKNGMKMSKSLGNV------V  353 (578)
T ss_pred             hcCCchhccccceeecCCCceeeeh-hhhhhhhhhhhhHHHHHhcCCCCccEEEEeeeeeecceecchhhccc------c
Confidence              221  000000000000223555 788765554442 344556898886543 578888999999998642      2


Q ss_pred             CCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        565 NDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       565 ~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                          ||+-     | -+-|.+.+++-|+..-|.-.++..++.+.|....
T Consensus       354 ----dP~~-----l-~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~  392 (578)
T KOG0436|consen  354 ----DPFE-----L-VQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIV  392 (578)
T ss_pred             ----CHHH-----H-HHHhCccceeeEeeeccccCCCCCccHHHHHHHH
Confidence                5543     1 2246788999999999998999999988876554

>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]

Probab=95.25  E-value=0.4  Score=55.91  Aligned_cols=158  Identities=16%  Similarity=0.270  Sum_probs=106.8

Q ss_pred             HHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhcc---------CCCccchHHHHHH
Q psy17575         67 SAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIK---------SQSSIHLPLLVKY  135 (832)
Q Consensus        67 ~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k---------~~~~~~r~~l~~~  135 (832)
                      +.|. ..||++.-|.-++.++.+++-+..+.....     -.+...+.+.+ |+..+.         +...++..-|+..
T Consensus       308 ~r~~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~-----~~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~l  382 (483)
T COG0064         308 ERYIKEYGLSEYDARVLTSDKELADYFEEAVKAGA-----DAKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKL  382 (483)
T ss_pred             HHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHH
Confidence            3444 799999999999999999988876632211     13444443322 222222         1224678999999


Q ss_pred             HHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhccc--ccchhhhHHHH-
Q psy17575        136 IVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRY--RYNLGLVMQEV-  212 (832)
Q Consensus       136 I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry--~~n~g~ll~~v-  212 (832)
                      |.+|+|....--+....-+.+.+  -+..+.-++-|...+-.+++|+++|.++|++|.+.++.-|=  .--+|=++|+| 
T Consensus       383 i~~g~IS~k~AK~~v~~~~~~~~--~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVM  460 (483)
T COG0064         383 IDEGTISGKIAKELVFEILANGG--KDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVM  460 (483)
T ss_pred             HHcCCccHHHHHHHHHHHHHccC--CCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHH
Confidence            99999987555554555555442  47888899999999777779999999999999998766441  11245555555 


Q ss_pred             HhhCCCCChhhhHHHHHHH
Q psy17575        213 RTLLKWADGKYIKSEVDVQ  231 (832)
Q Consensus       213 R~~LkWAd~k~vK~~vD~~  231 (832)
                      |+.=-=|||..+...|-+.
T Consensus       461 k~T~GkAnP~~v~~ll~~~  479 (483)
T COG0064         461 KATKGKANPQQVNELLKEK  479 (483)
T ss_pred             HHhcCCCCHHHHHHHHHHH
Confidence            3344568888877766553

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed

Probab=95.12  E-value=0.06  Score=60.33  Aligned_cols=92  Identities=22%  Similarity=0.174  Sum_probs=60.2

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcC--cccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPY--QITH  390 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~  390 (832)
                      |.+=|.  |||.+||||...++.+|..-+..+..+++--|+.       +++ +..++...+..++-.+|++|+  .+..
T Consensus         5 v~sG~~--PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~-~i~~~~~~~~~~~lA~G~dp~k~~i~~   81 (333)
T PRK12282          5 ILTGDR--PTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPE-KIRRNILEVALDYLAVGIDPAKSTIFI   81 (333)
T ss_pred             EEEeeC--CCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHH-HHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence            444444  5799999999999999966666666655543433       222 233455566667778999998  4677


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHh
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK  422 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~  422 (832)
                      ||+..+ +.+.+.       .+.|.++-.++.
T Consensus        82 qS~~~e-~~~l~~-------~l~~~~~~~~l~  105 (333)
T PRK12282         82 QSQIPE-LAELTM-------YYMNLVTVARLE  105 (333)
T ss_pred             CCcchH-HHHHHH-------HHHhhchHHHHh
Confidence            998643 444322       266777777665

>PLN02882 aminoacyl-tRNA ligase

Probab=94.86  E-value=0.071  Score=68.55  Aligned_cols=90  Identities=20%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc----------------c-----------------ccHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE----------------K-----------------EEEK  369 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~----------------r-----------------~~~e  369 (832)
                      ||.+||.||+||+++..+-..+||.  ..|.-+++.--+|-.                +                 -...
T Consensus        46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~  125 (1159)
T PLN02882         46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR  125 (1159)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence            6999999999999999999888875  456666665444311                0                 1246


Q ss_pred             HHHHHHHHHHHcC--CCcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        370 FFTGIKDMVQWLG--YKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       370 ~~~~I~edL~WLG--l~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      |.+.+.+.++.||  ++|+..+...+  |.........+|.++|+.|.-
T Consensus       126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~  174 (1159)
T PLN02882        126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKG  174 (1159)
T ss_pred             HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence            7788899999999  77886655444  222223334579999998864

>KOG0435|consensus

Probab=94.74  E-value=0.032  Score=66.32  Aligned_cols=95  Identities=27%  Similarity=0.401  Sum_probs=66.3

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcC--CEEEEe----------cc------CCCcccccHHHHHHHHHHH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHN--GICFLR----------YD------DTNPEKEEEKFFTGIKDMV  378 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~g--G~~iLR----------iD------DTDp~r~~~e~~~~I~edL  378 (832)
                      +.+++.=-=|-|+|.|||||.|...++-..||-+.  |.=++-          =|      .++|.-=....++...+.|
T Consensus        57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql  136 (876)
T KOG0435|consen   57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQL  136 (876)
T ss_pred             CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHH
Confidence            34566666699999999999999999999987643  433321          11      2344444667888999999


Q ss_pred             HHcCC--CcCc-ccccchhHHHHHHH----HHHHHHcCCcccc
Q psy17575        379 QWLGY--KPYQ-ITHSSDYFHQLYEW----AVKLIKKGLAYVC  414 (832)
Q Consensus       379 ~WLGl--~pd~-~~~qSd~~~~~ye~----A~~Li~~G~AY~C  414 (832)
                      ..||+  +||+ ++-.+   ..||.+    ..+|.+.|+||.-
T Consensus       137 ~~lg~~FDWdrEiSTC~---PdYYKWTQwiFlkLfe~GLAYq~  176 (876)
T KOG0435|consen  137 KSLGISFDWDREISTCE---PDYYKWTQWIFLKLFEKGLAYQA  176 (876)
T ss_pred             HHcCcccccccccccCC---cchhHHHHHHHHHHHHhhhhhcc
Confidence            99996  5764 43333   345543    3489999999975

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed

Probab=94.62  E-value=0.082  Score=60.93  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHh-cCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAA-HNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH  396 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~-~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~  396 (832)
                      .|||.|||||...++-||..... .|..+++=|=|.       ||++-. .....+..++-.+|++|++  +..||+. .
T Consensus        10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr-~~~~e~aa~~LA~GlDPek~~if~QSdv-p   87 (431)
T PRK12284         10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQ-RSTLEIAATWLAAGLDPERVTFYRQSDI-P   87 (431)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHH-HHHHHHHHHHHHhCCCccceEEEECCcc-h
Confidence            58999999999999999988754 455666555553       444333 3344466677778999984  6889984 4


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      .+.+++--|-       |.++--+|.+
T Consensus        88 eh~EL~wiL~-------~it~~g~L~R  107 (431)
T PRK12284         88 EIPELTWLLT-------CVAGKGLLNR  107 (431)
T ss_pred             hHHHHHHHHH-------hhhhHHHHHh
Confidence            5556554443       7666666654

>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene

Probab=94.56  E-value=0.19  Score=49.82  Aligned_cols=85  Identities=22%  Similarity=0.267  Sum_probs=58.3

Q ss_pred             chHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q psy17575        128 HLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGL  207 (832)
Q Consensus       128 ~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~  207 (832)
                      .+.-+..|-..|+..--.+..+=+..|.+.-+              -.+|+|+|+.+|.++|++..+.  ..+   ++|.
T Consensus        57 r~ea~e~y~~agR~dlae~e~~Ei~iL~~yLP--------------~~lseeEi~~~v~~~i~e~ga~--~~k---~mG~  117 (143)
T PF09424_consen   57 RKEAAEQYEKAGRPDLAEKEQAEIEILEEYLP--------------KQLSEEEIEAIVEEAIAELGAS--SMK---DMGK  117 (143)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS-------------------HHHHHHHHHHHHHHTT----BGG---GHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCc--------------CCCCHHHHHHHHHHHHHHhCCC--ChH---HHHH
Confidence            45666777777776656666777777776621              2799999999999999997654  223   8999


Q ss_pred             hHHHHHhhCC-CCChhhhHHHHHHH
Q psy17575        208 VMQEVRTLLK-WADGKYIKSEVDVQ  231 (832)
Q Consensus       208 ll~~vR~~Lk-WAd~k~vK~~vD~~  231 (832)
                      +|+.++..++ =|||+.|...|-..
T Consensus       118 vMk~l~~~~~G~~Dgk~vs~~Vk~~  142 (143)
T PF09424_consen  118 VMKALMAKLKGRADGKKVSQLVKEA  142 (143)
T ss_dssp             HHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcccHHHHHHHHHhh
Confidence            9999998655 68999998887653

; PDB: 1NG6_A.

>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E

Probab=94.20  E-value=0.16  Score=50.12  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=73.6

Q ss_pred             ccchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHh--ccccc
Q psy17575        126 SIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLD--KRYRY  203 (832)
Q Consensus       126 ~~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~--~ry~~  203 (832)
                      ..+...|+..+.+|+|.. .+....+..+-++  .-+..+.-++.|.+..-++++|++.|+++|++|.+++..  ++=.-
T Consensus        42 ~~~l~~li~l~~~~~Is~-~~ak~ll~~~~~~--~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k  118 (148)
T PF02637_consen   42 PEHLAELINLLEDGKISK-KSAKELLRELLEN--GKSPEEIIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKK  118 (148)
T ss_dssp             HHHHHHHHHHHHTTSSGH-HHHHHHHHHHHHH--TS-HHHHHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TT
T ss_pred             HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHc--CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHH
Confidence            367889999999999976 6778888877655  357788888899988888899999999999999876543  22223


Q ss_pred             chhhhHHHHHhh-CCCCChhhhHHHHHHH
Q psy17575        204 NLGLVMQEVRTL-LKWADGKYIKSEVDVQ  231 (832)
Q Consensus       204 n~g~ll~~vR~~-LkWAd~k~vK~~vD~~  231 (832)
                      -+|-|||+|-+. =-=|||+.|++.+.+.
T Consensus       119 ~~~~LvGqvMk~t~G~adp~~v~~~l~~~  147 (148)
T PF02637_consen  119 AIGFLVGQVMKETKGRADPKEVKELLKEK  147 (148)
T ss_dssp             CCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            478899998664 4479999999988764

These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....

>KOG0432|consensus

Probab=93.94  E-value=0.13  Score=63.06  Aligned_cols=92  Identities=28%  Similarity=0.354  Sum_probs=67.5

Q ss_pred             eCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCccc------------------------c---------cH
Q psy17575        324 FPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPEK------------------------E---------EE  368 (832)
Q Consensus       324 FaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~r------------------------~---------~~  368 (832)
                      =||..||-||||||-++.+--..||.  ..|.-+|=+--||..-                        +         .+
T Consensus        82 PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~  161 (995)
T KOG0432|consen   82 PPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKE  161 (995)
T ss_pred             CCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHH
Confidence            36889999999999999999888876  4577777777776431                        1         35


Q ss_pred             HHHHHHHHHHHHcC--CCcCcccccch-hHH-HHHHHHHHHHHcCCccccC
Q psy17575        369 KFFTGIKDMVQWLG--YKPYQITHSSD-YFH-QLYEWAVKLIKKGLAYVCH  415 (832)
Q Consensus       369 e~~~~I~edL~WLG--l~pd~~~~qSd-~~~-~~ye~A~~Li~~G~AY~C~  415 (832)
                      +|-..|.+.|+.||  ++|++..+.-| .+. ..-+...+|-++|..|+..
T Consensus       162 e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~  212 (995)
T KOG0432|consen  162 EYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN  212 (995)
T ss_pred             HhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC
Confidence            67778999999999  56776655443 111 2234556899999999874

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed

Probab=93.89  E-value=0.16  Score=58.16  Aligned_cols=88  Identities=19%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc---cccHHHHHHHHHHHHHcCCCcC--cccccchhHHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE---KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFHQ  397 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~---r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~~  397 (832)
                      .|||.+||||...++-||.- .+.++.+++=|=|.    ++.   .+..+....+..++-.+|++|.  .+..||+. ..
T Consensus        10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v-~e   87 (398)
T PRK12283         10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKV-PE   87 (398)
T ss_pred             CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCc-hH
Confidence            47899999999999998873 45577766666663    221   2334555667888888999998  47889985 33


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      +-+.+-       .|.|.++--++++
T Consensus        88 h~eL~w-------il~~~t~~~~L~R  106 (398)
T PRK12283         88 HAELHL-------LLSMITPLGWLER  106 (398)
T ss_pred             HHHHHH-------HHHhhccHHHHHh
Confidence            323222       2457777666653

>PLN02959 aminoacyl-tRNA ligase

Probab=93.88  E-value=0.15  Score=65.40  Aligned_cols=31  Identities=42%  Similarity=0.486  Sum_probs=25.8

Q ss_pred             ceEEeeC-CCCCCcCchHHHHHHHHHHHHHHh
Q psy17575        319 KVRTRFP-PEPNGILHIGHAKAININFGYAAA  349 (832)
Q Consensus       319 ~v~tRFa-PsPtG~LHIGharaaL~n~l~Ar~  349 (832)
                      +...=|| |.+||.|||||+++..+--.+||.
T Consensus        46 kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Ry   77 (1084)
T PLN02959         46 KFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAY   77 (1084)
T ss_pred             cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHH
Confidence            4566676 999999999999999998777764

>PLN02886 aminoacyl-tRNA ligase

Probab=93.46  E-value=0.17  Score=57.78  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=61.0

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcC--cccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPY--QITH  390 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~  390 (832)
                      |.+=|-  |||.+||||..-++-||..-.. +..+++=|=|.       |++ +..++...+..++-.+|++|.  .+..
T Consensus        49 v~sGiq--PSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~-~lr~~~~~~~a~~lA~GlDP~ks~if~  124 (389)
T PLN02886         49 VVSGVQ--PTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPR-ELGKATRSTAAIYLACGIDPSKASVFV  124 (389)
T ss_pred             EEEEEC--CCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHH-HHHHHHHHHHHHHHHcCcCccceEEEE
Confidence            555554  6799999999988999966554 55555555553       222 233455556778888899998  4688


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      ||+. ..+.+++-.       +.|.++--+|.+
T Consensus       125 QS~v-~e~~eL~wi-------l~~~t~~g~L~R  149 (389)
T PLN02886        125 QSHV-PAHAELMWL-------LSCSTPIGWLNK  149 (389)
T ss_pred             eCCC-chhHHHHHH-------HHhhCcHHHHHh
Confidence            9984 444454433       457777767764

>smart00845 GatB_Yqey GatB domain

Probab=93.27  E-value=0.6  Score=46.24  Aligned_cols=101  Identities=21%  Similarity=0.277  Sum_probs=76.4

Q ss_pred             cchHHHHHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCH-HHHHHHHHHHHHHHHHHHHhcc--ccc
Q psy17575        127 IHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTS-EDIEETVSKVVEKHKAELLDKR--YRY  203 (832)
Q Consensus       127 ~~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~-EqI~~~V~~~i~~~k~~l~~~r--y~~  203 (832)
                      .+...|++.|.+|+|.. .+....++.+-+.+  -+..++-++.|.+- +|. +++++.|+++|++|.+.+.+-|  -.-
T Consensus        42 ~~l~~li~lv~~g~It~-~~ak~vl~~~~~~~--~~~~~ii~~~~l~~-isd~~el~~~v~~vi~~~~~~v~~~~~g~~k  117 (147)
T smart00845       42 EHLAELLKLIEDGTISG-KIAKEVLEELLESG--KSPEEIVEEKGLKQ-ISDEGELEAIVDEVIAENPKAVEDYRAGKKK  117 (147)
T ss_pred             HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcC--CCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHHCHHHHHHHHCCHHH
Confidence            67889999999999986 55566777665543  46889999999974 675 5999999999999988765432  112


Q ss_pred             chhhhHHHHHh-hCCCCChhhhHHHHHHH
Q psy17575        204 NLGLVMQEVRT-LLKWADGKYIKSEVDVQ  231 (832)
Q Consensus       204 n~g~ll~~vR~-~LkWAd~k~vK~~vD~~  231 (832)
                      .+|.+||++-+ .=-=|||+.+.+.|.+.
T Consensus       118 ~~~~l~G~vMk~~~G~ad~~~v~~~l~~~  146 (147)
T smart00845      118 ALGFLVGQVMKATRGKADPKLVNELLKEK  146 (147)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            47888888865 33448999999887653

This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.

>PLN02486 aminoacyl-tRNA ligase

Probab=93.19  E-value=0.31  Score=55.67  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             ceEEeeCCCCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc---cccHHHHHHHHHHHHHcCCCcCc--c
Q psy17575        319 KVRTRFPPEPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE---KEEEKFFTGIKDMVQWLGYKPYQ--I  388 (832)
Q Consensus       319 ~v~tRFaPsPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~---r~~~e~~~~I~edL~WLGl~pd~--~  388 (832)
                      +...=-.=.||| .|||||+-.+++.-.+.+..|..+++=|-|-    ...   .+..++......++..+|++|++  +
T Consensus        73 ~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I  152 (383)
T PLN02486         73 KFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFI  152 (383)
T ss_pred             CeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEE
Confidence            433333346788 5999999999987777777788888777761    111   11234445566777779999984  4


Q ss_pred             cccchhH-HHHHHHHHH
Q psy17575        389 THSSDYF-HQLYEWAVK  404 (832)
Q Consensus       389 ~~qSd~~-~~~ye~A~~  404 (832)
                      ..+++++ ..+|..+.+
T Consensus       153 ~s~~~~~~~~~~~~~~~  169 (383)
T PLN02486        153 FSDFDYVGGAFYKNMVK  169 (383)
T ss_pred             EeccHHHhHhHHHHHHH
Confidence            5566665 235554544

>PTZ00126 tyrosyl-tRNA synthetase; Provisional

Probab=92.05  E-value=0.63  Score=53.26  Aligned_cols=91  Identities=18%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             cHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc----cccHHHHHHHH
Q psy17575        305 THDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE----KEEEKFFTGIK  375 (832)
Q Consensus       305 ~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~----r~~~e~~~~I~  375 (832)
                      +.+.|++.|+. +...+.=..=.|||.+||||.-.-.++|.-=...|..+++=|-|.     |+.    ...........
T Consensus        53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~  131 (383)
T PTZ00126         53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFI  131 (383)
T ss_pred             CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHH
Confidence            36667777753 344445555568899999993222223333345577777766664     221    12234445566


Q ss_pred             HHHHHcCCCcC--cccccchhHH
Q psy17575        376 DMVQWLGYKPY--QITHSSDYFH  396 (832)
Q Consensus       376 edL~WLGl~pd--~~~~qSd~~~  396 (832)
                      .++..+|++|+  .+.+||++..
T Consensus       132 ~~~~A~GlDp~k~~i~~qS~~v~  154 (383)
T PTZ00126        132 EVWKAAGMDMDNVRFLWASEEIN  154 (383)
T ss_pred             HHHHHhCCCccceEEEECChhhh
Confidence            67888999998  5688998654

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6

Probab=91.95  E-value=0.1  Score=58.73  Aligned_cols=45  Identities=29%  Similarity=0.376  Sum_probs=32.3

Q ss_pred             CceEEee-CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC
Q psy17575        318 GKVRTRF-PPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN  362 (832)
Q Consensus       318 ~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD  362 (832)
                      .+|+.=| .|.|||+|||||+|++++=..+||-  +.|-=+.|.-=+|
T Consensus        20 ~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyig   67 (354)
T PF00750_consen   20 KKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIG   67 (354)
T ss_dssp             EEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEB
T ss_pred             CEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEEC
Confidence            3455555 6999999999999999998888875  6677777754444

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=91.32  E-value=4.2  Score=47.97  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=40.2

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccccH
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKEEE  368 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~~~  368 (832)
                      +.+++==.=||||..||||+|-.+--...+|.     +.-++|-=-||-||-|..+
T Consensus        19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp   74 (521)
T COG1384          19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVP   74 (521)
T ss_pred             CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCC
Confidence            55666667899999999999988877766654     4467888889999988644

>PTZ00348 tyrosyl-tRNA synthetase; Provisional

Probab=89.65  E-value=1.9  Score=52.89  Aligned_cols=89  Identities=17%  Similarity=0.065  Sum_probs=53.3

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cccc-c---cHHHHHHHHH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPEK-E---EEKFFTGIKD  376 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~r-~---~~e~~~~I~e  376 (832)
                      .+.|++-|+. +..++.=..=.|||.|||||..-..+++....+.|..+++=|-|.     |+.. .   .......+..
T Consensus        20 ~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~   98 (682)
T PTZ00348         20 ESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIE   98 (682)
T ss_pred             HHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHH
Confidence            4555554532 333444445568899999993222444444456787877767664     2211 1   1222346777


Q ss_pred             HHHHcCCCcC--cccccchhH
Q psy17575        377 MVQWLGYKPY--QITHSSDYF  395 (832)
Q Consensus       377 dL~WLGl~pd--~~~~qSd~~  395 (832)
                      ++..+|++|+  .+.+||+.+
T Consensus        99 ~~lA~GlDpeK~~~~~qSd~i  119 (682)
T PTZ00348         99 VWKAAGMDMDKVLFLWSSEEI  119 (682)
T ss_pred             HHHHcCCCccceEEEECcHhh
Confidence            8889999998  467899733

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6

Probab=88.07  E-value=0.11  Score=57.62  Aligned_cols=54  Identities=28%  Similarity=0.385  Sum_probs=42.7

Q ss_pred             CCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCHHHHHHHHHHhhc
Q psy17575        565 NDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSPNMLEAVVREVLN  618 (832)
Q Consensus       565 ~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~~~le~~~r~~l~  618 (832)
                      .+|++|+..++.+|+++|++|+++.+|+...|++... ....+...+.|+++.|+
T Consensus       259 r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~f~~~~~~~~~~~fd~~kL~  313 (314)
T PF00749_consen  259 REWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQFDLSKISKSPAVFDRKKLD  313 (314)
T ss_dssp             HHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHHC-GGGBHSSHEEHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHHhhHhhccCchHHhCHHHhC
Confidence            4799999999999999999999999999999988654 44556666777777664

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....

>PHA01735 hypothetical protein

Probab=87.78  E-value=0.86  Score=39.78  Aligned_cols=53  Identities=25%  Similarity=0.241  Sum_probs=45.0

Q ss_pred             HHHHHHHHhCCCCCHHhHHHHHHHHHhCCCc---cCHHHHHHHcCCcEEeCHHHHHH
Q psy17575        130 PLLVKYIVSKALDSTLRVDAALEYVLSHVNA---VNEKELEASCGVGVIVTSEDIEE  183 (832)
Q Consensus       130 ~~l~~~I~~gklkt~~Ql~aAlkyl~~~~~~---~d~~~Fe~~cGVGV~VT~EqI~~  183 (832)
                      ..+.+.|.+|.-+| +.|.||++||++|.-+   .+-.-+.+-.|+=-.+|.|+|++
T Consensus        19 ~El~~RiksgeATt-aDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~   74 (76)
T PHA01735         19 NELLSRIKSGEATT-ADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQE   74 (76)
T ss_pred             HHHHHHHhcCcccH-HHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHh
Confidence            56789999998765 9999999999999533   77788999999988999999765

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=86.87  E-value=1  Score=57.18  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             eeeecccccccchhHHHHHHhcCCC---CCCcc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCC
Q psy17575        509 HSLCTKEFQSRRSSYYWLCNALDIY---CPVQW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFP  584 (832)
Q Consensus       509 HvlRg~E~~~~~~~~~~L~~aL~~~---~P~~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~  584 (832)
                      .-+=|.|++..+..+..+..++.+.   -|..| ..||+..+|.||||++++-               .++..+.++ |.
T Consensus       576 ~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNv---------------I~p~d~i~~-yG  639 (938)
T TIGR00395       576 WRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNV---------------LTLEQAVEK-FG  639 (938)
T ss_pred             EEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCC---------------CCHHHHHHH-cC
Confidence            3344888876554443333333332   24332 3577888999999999752               234444443 89


Q ss_pred             HHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575        585 PEAINKFCARMGVTGAQAVVSPNMLEAVVR  614 (832)
Q Consensus       585 PeAI~nfl~~lG~s~~~~~~~~~~le~~~r  614 (832)
                      +.++|-||+..|-...+..|+++.+.+..+
T Consensus       640 aDalRl~Ll~~~~~~~D~~fs~~~~~~~~~  669 (938)
T TIGR00395       640 ADVARLYIADAAETVQDADWKESEVEGTIL  669 (938)
T ss_pred             hHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence            999999999988777888888877765543

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>TIGR00234 tyrS tyrosyl-tRNA synthetase

Probab=86.46  E-value=2.6  Score=48.26  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEE  368 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~  368 (832)
                      .+.|.++++.   +.+.=..=.||| .|||||+..+. ++..-+..|-..++=|-|-     ||.     |      +..
T Consensus        20 ~~~l~~ll~~---~~~vy~G~dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~   95 (377)
T TIGR00234        20 EEELLKLLER---KIKLYVGFDPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ   95 (377)
T ss_pred             HHHHHHHhcC---CCEEEEeeCCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence            5677777765   333334446889 89999998644 4444445665555556554     442     1      122


Q ss_pred             HHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575        369 KFFTGIKDMVQWLGYKPY--QITHSSDYFH  396 (832)
Q Consensus       369 e~~~~I~edL~WLGl~pd--~~~~qSd~~~  396 (832)
                      ++.+.|.. .-..|++|+  .+.++|+.+.
T Consensus        96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~  124 (377)
T TIGR00234        96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL  124 (377)
T ss_pred             HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence            34444443 335678876  4678888654

This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]

Probab=86.22  E-value=0.38  Score=56.38  Aligned_cols=93  Identities=16%  Similarity=0.268  Sum_probs=67.3

Q ss_pred             CCCCCccc---ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccC---
Q psy17575        532 IYCPVQWE---YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVS---  605 (832)
Q Consensus       532 ~~~P~~~e---f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~---  605 (832)
                      ++..+.|.   |.|+++... =..+++++--  |         ..++..++..|+.|+||.||++.+||+.....+.   
T Consensus       226 l~~~lg~~~P~~~H~~li~~-~~g~kLSKr~--~---------~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~  293 (472)
T COG0008         226 LYEALGWPPPVYAHLPLLLN-EDGKKLSKRK--G---------AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFS  293 (472)
T ss_pred             HHHHcCCCCCcEEEeeeeec-CCCCeecCcc--C---------ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHH
Confidence            45566666   888888877 5655666531  2         3478889999999999999999999997644333   


Q ss_pred             -HHHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        606 -PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       606 -~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                       .+.+.++.-..+.+.    .+.+|..||.|.|...
T Consensus       294 ~~~~~~~fd~~~~~~~----~~~fd~~kL~~~n~ry  325 (472)
T COG0008         294 LEEGIKWFDLTIVSKS----PAAFDRKKLDWLNPRY  325 (472)
T ss_pred             HHHHHhhhhhhhhhcc----cccccHHHhHhhhHHH
Confidence             344555555554444    4889999999999654

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=85.74  E-value=1.2  Score=56.34  Aligned_cols=81  Identities=25%  Similarity=0.266  Sum_probs=53.3

Q ss_pred             CchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCccc-------------------------------------ccHH
Q psy17575        332 LHIGHAKAININFGYAAA--HNGICFLR---YDDTNPEK-------------------------------------EEEK  369 (832)
Q Consensus       332 LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~r-------------------------------------~~~e  369 (832)
                      |||||+++..+--.+||.  ..|.-+|+   +|.+--+-                                     -...
T Consensus         1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~   80 (897)
T PRK12300          1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY   80 (897)
T ss_pred             CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence            799999999998888875  45776766   34332111                                     1123


Q ss_pred             HHHHHHHHHHHcCC--CcCcccccchhHHHHHHH----HHHHHHcCCcccc
Q psy17575        370 FFTGIKDMVQWLGY--KPYQITHSSDYFHQLYEW----AVKLIKKGLAYVC  414 (832)
Q Consensus       370 ~~~~I~edL~WLGl--~pd~~~~qSd~~~~~ye~----A~~Li~~G~AY~C  414 (832)
                      |.+.+.++++.||+  +|++.+...|  ..|++.    ..+|.++|++|.-
T Consensus        81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyrg  129 (897)
T PRK12300         81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVKG  129 (897)
T ss_pred             hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEecC
Confidence            44778999999996  4666544444  233332    3479999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	832
1qru_A	553	Glutaminyl-Trna Synthetase Mutant I129t Complexed W		1e-118
1qrs_A	553	Glutaminyl-Trna Synthetase Mutant D235n Complexed W		1e-118
1qrt_A	553	Glutaminyl-Trna Synthetase Mutant D235g Complexed W		1e-118
1gsg_P	553	Structure Of E.Coli Glutaminyl-Trna Synthetase Comp		1e-118
1o0b_A	554	Crystal Structure Of L-Glutamine And Ampcpp Bound T		1e-118
1euq_A	548	Crystal Structure Of Glutaminyl-Trna Synthetase Com		1e-118
1nyl_A	539	Unliganded Glutaminyl-Trna Synthetase Length = 539		1e-118
2rd2_A	556	Glutaminyl-Trna Synthetase Mutant C229r With Bound		1e-117
2hz7_A	851	Crystal Structure Of The Glutaminyl-Trna Synthetase		7e-94
3aii_A	553	Archaeal Non-Discriminating Glutamyl-Trna Synthetas		2e-40
3tl4_X	187	Crystal Structure Of The Trna Binding Domain Of Glu		3e-18
2cfo_A	492	Non-discriminating Glutamyl-trna Synthetase From Th		1e-10
4gri_A	512	Crystal Structure Of A Glutamyl-Trna Synthetase Glu		4e-10
2o5r_A	481	Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec		9e-10
3pny_A	505	Structure Of Glutamyl-Trna Synthetase From Mycobact		2e-08
2ja2_A	498	Mycobacterium Tuberculosis Glutamyl-Trna Synthetase		2e-08
3pnv_A	505	V369m Mutant Of Glutamyl-Trna Synthetase From Mycob		2e-08
4g6z_A	490	Crystal Structure Of A Glutamyl-Trna Synthetase Glu		7e-08
3al0_C	592	Crystal Structure Of The Glutamine Transamidosome F		1e-07
3akz_B	487	Crystal Structure Of Thermotoga Maritima Nondiscrim		2e-07
3afh_A	488	Crystal Structure Of Thermotoga Maritima Nondiscrim		2e-07
1j09_A	468	Crystal Structure Of Thermus Thermophilus Glutamyl-		2e-04
1g59_A	468	Glutamyl-Trna Synthetase Complexed With Trna(Glu).		5e-04

>pdb|1QRU|A Chain A, Glutaminyl-Trna Synthetase Mutant I129t Complexed With Glutamine Transfer Rna Length = 553

Iteration: 1
 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/532 (43%), Positives = 321/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 27  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     +++ E +G    P   SP+R
Sbjct: 87  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQTREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             G+A+           FQFER G+F +D   +   KPV N TV L++   K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550

>pdb|1QRS|A Chain A, Glutaminyl-Trna Synthetase Mutant D235n Complexed With Glutamine Transfer Rna Length = 553

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/532 (43%), Positives = 321/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 27  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 87  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ+ R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQNNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             G+A+           FQFER G+F +D   +   KPV N TV L++   K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550

>pdb|1QRT|A Chain A, Glutaminyl-Trna Synthetase Mutant D235g Complexed With Glutamine Transfer Rna Length = 553

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/532 (43%), Positives = 320/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 27  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 87  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQGNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             G+A+           FQFER G+F +D   +   KPV N TV L++   K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550

>pdb|1GSG|P Chain P, Structure Of E.Coli Glutaminyl-Trna Synthetase Complexed With Trnagln And Atp At 2.8 Angstroms Resolution Length = 553

Iteration: 1
 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/532 (43%), Positives = 320/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 27  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 86
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 87  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 146
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 147 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 206
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 207 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 266
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 267 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 326
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 327 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 384
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 385 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 443
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 444 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 498
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             G+A+           FQFER G+F +D   +   KPV N TV L++   K
Sbjct: 499 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 550

>pdb|1O0B|A Chain A, Crystal Structure Of L-Glutamine And Ampcpp Bound To Glutamine Aminoacyl Trna Synthetase Length = 554

Iteration: 1
 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/532 (43%), Positives = 320/532 (60%), Gaps = 28/532 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 28  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 88  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 147
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 148 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 267
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 268 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 327
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 328 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 385
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 386 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 445 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 499
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKEDSGK 831
             G+A+           FQFER G+F +D   +   KPV N TV L++   K
Sbjct: 500 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAK 551

>pdb|1EUQ|A Chain A, Crystal Structure Of Glutaminyl-Trna Synthetase Complexed With A Trna- Gln Mutant And An Active-Site Inhibitor Length = 548

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/528 (44%), Positives = 319/528 (60%), Gaps = 28/528 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 28  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 88  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 147
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 148 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 267
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 268 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 327
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 328 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 385
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 386 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 445 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 499
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
             G+A+           FQFER G+F +D   +   KPV N TV L++
Sbjct: 500 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 547

>pdb|1NYL|A Chain A, Unliganded Glutaminyl-Trna Synthetase Length = 539

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/528 (44%), Positives = 319/528 (60%), Gaps = 28/528 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 20  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 79
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 80  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 139
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 140 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 199
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 200 IYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 259
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 260 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 319
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 320 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 377
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 378 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 436
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 437 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 491
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
             G+A+           FQFER G+F +D   +   KPV N TV L++
Sbjct: 492 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 539

>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog 5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine Length = 556

Iteration: 1
 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/528 (43%), Positives = 318/528 (60%), Gaps = 28/528 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ V+
Sbjct: 28  VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVE 87
Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYV---CHQKSDEMKGFNPLP---SPWR 432
           WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++  E +G    P   SP+R
Sbjct: 88  WLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYR 147
Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ WC
Sbjct: 148 DRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC 207
Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+THC+ D++E ITHSL T EFQ  R  Y W+ + + I   P Q+E+ RLN+ YT
Sbjct: 208 IYPMYDFTHCISDALEGITHSLRTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYT 267
Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           V+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +    
Sbjct: 268 VMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMAS 327
Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRT 668
           LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ PN    GS  + F   
Sbjct: 328 LESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGE 385
Query: 669 IYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSI-------DVK 721
           I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G IT+I        + 
Sbjct: 386 IWIDRADFREEANKQYKRLVLGKEVRLRNA-YVIKAERVEKDAEGNITTIFCTYDADTLS 444
Query: 722 ATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKV 779
             P D   K K  IHWV  A  + +E+RLY  LF   NP       + +LS INP+SL +
Sbjct: 445 KDPAD-GRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVI 499
Query: 780 SIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
             G+A+           FQFER G+F +D   +   KPV N TV L++
Sbjct: 500 KQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 547

>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From Deinococcus Radiodurans Length = 851

Iteration: 1
 Score =  341 bits (875), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 295/574 (51%), Gaps = 67/574 (11%)
Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           +V TRFPP+P+G  H+GH  A  ++F  A  + G   LR DDTNPE   +++   I D +
Sbjct: 66  RVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDL 125
Query: 379 QWLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP------LPSPW 431
           +WLG        ++SDYF + Y +A +LI++G AYV     +E+            PSP+
Sbjct: 126 KWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPY 185
Query: 432 RERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSW 488
           R+R VEEN+ L   MK G   +GE  LR KI L       +DPV YRI   PH RT D W
Sbjct: 186 RDRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW 245
Query: 489 CIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNY 547
            IYP YD+ H L D+IE +THS+C+ EF   R+ Y WL   L+    P Q+E+GR  + Y
Sbjct: 246 HIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEY 305
Query: 548 TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPN 607
           T+ SKRK+ +L++   V+ WDDPR+ TL A RR G  PEA+  F A++GV+     V   
Sbjct: 306 TITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIA 365
Query: 608 MLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGS------- 660
           + E  VR+ LN  APRVM V+DP+ + + N D    +   ++P +P+D  + S       
Sbjct: 366 VYENAVRDDLNHRAPRVMAVLDPVKVTLTNLDG---EKTLSLPYWPHDVVRDSPDGLVGM 422
Query: 661 ------------HDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVN 708
                        D+   R +YIE+ DF     KG++RL PG  V LR AG ++  D   
Sbjct: 423 PGGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAG-IIRADDFG 481
Query: 709 TKCNGAITSIDVKATPVDVDNKPKAFIHWVA--RPISIEVRLYSTLFLHKNPE------- 759
           T   G +T I  +AT +  D K    IHWV+  R +  E RLY  LF   +PE       
Sbjct: 482 TDEAGQVTHI--RATLLGEDAKAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADVE 539
Query: 760 -----------------DTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERV 802
                            +T  V +G++  + PDSL+V  GY +    G     R+QFER 
Sbjct: 540 DDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQ 599
Query: 803 GFFTVD-----RDSNINHKPVVNLTVSLKEDSGK 831
           G+F  D     R  +     V    ++LK+  GK
Sbjct: 600 GYFWRDPVELERVDSREDALVFGRIITLKDTWGK 633

>pdb|3AII|A Chain A, Archaeal Non-Discriminating Glutamyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Length = 553

Iteration: 1
 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 215/508 (42%), Gaps = 79/508 (15%)
Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
           G+V  RF P P+G LHIGHA+A  +N  YA  ++G   LR +DT+P + + + +  I   
Sbjct: 95  GEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPAD 154
Query: 378 VQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK--------------G 423
           ++WLG +  +    SD     YE+  KLI++G AYVC  + +E +              G
Sbjct: 155 LEWLGVEWDETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLG 214
Query: 424 FNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE---GKQDPVAYRIKFLP 480
           F      WRE        +FE      + EG A +R+K  L       +D V+ RI    
Sbjct: 215 FRENLQRWRE--------MFE------MKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAE 260
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY 540
           H RTG  + +YP  +++  + D +  +TH L  K+  + R    +L   L    P    Y
Sbjct: 261 HPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHY 320
Query: 541 GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA 600
           GRL ++   +S     + I     + WDDPRL TL A+ RRG  PEAI K    +GV  A
Sbjct: 321 GRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIA 380
Query: 601 QAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGS 660
            + +S   +  + R +L + A R     DP+ L +V    L    +   P  P+    G+
Sbjct: 381 DSTMSWKKIYGLNRSILEEEARRYFFAADPVKLEVVG---LPGPVRVERPLHPDHPEIGN 437
Query: 661 HDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDV 720
             ++    +Y+                 PG  +G    G +  +D VN   +G       
Sbjct: 438 RVLELRGEVYL-----------------PGDDLG---EGPLRLIDAVNVIYSGGELRYHS 477
Query: 721 KATPVDVDNKPKAFIHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVS 780
           +    +      + IHWV    ++E  +                       I PD+ +V 
Sbjct: 478 EGIE-EARELGASMIHWVPAESALEAEV-----------------------IMPDASRVR 513
Query: 781 IGYADSGFVGVKPYDRFQFERVGFFTVD 808
            G  ++    ++  D  Q ER GF  +D
Sbjct: 514 -GVIEADASELEVDDVVQLERFGFARLD 540

>pdb|3TL4|X Chain X, Crystal Structure Of The Trna Binding Domain Of Glutaminyl-Trna Synthetase From Saccharomyces Cerevisiae Length = 187

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 10/187 (5%)
Query: 63  DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQ---DCGSLLYHLAS 119
           + +   F  VG  +KK KE +KN+ +S  L + I+E    +P   Q      +L+++LAS
Sbjct: 5   EELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKE----TPSDYQWNKSTRALVHNLAS 60
Query: 120 KIKSQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE 179
            +K        L+V  I++  L ++L+VDAA +YV ++  A  +     + GVG+ +T +
Sbjct: 61  FVKGTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKXGXNENSGVGIEITED 120
Query: 180 DIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTL--LKWADGKYIKSEVDVQVLNLLG 237
            +   V + ++++K  +L +RY+   G +  +V+ L  LKWAD +  K  +D +VL LLG
Sbjct: 121 QVRNYVXQYIQENKERILTERYKLVPG-IFADVKNLKELKWADPRSFKPIIDQEVLKLLG 179
Query: 238 PKTEADL 244
           PK E DL
Sbjct: 180 PKDERDL 186

>pdb|2CFO|A Chain A, Non-discriminating Glutamyl-trna Synthetase From Thermosynechococcus Elongatus In Complex With Glu Length = 492

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR R  P P G LHIG A+    N+ YA    G   LR +DT+ E+   ++   I + +Q
Sbjct: 2   VRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQ 61
Query: 380 WLGYK----PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN 425
           WLG      PY  +   D + Q  +    L+ KGLAY C+   +E++   
Sbjct: 62  WLGLTWDEGPYFQSDRLDLYRQAIQ---TLLDKGLAYYCYCTPEELEALR 108

>pdb|4GRI|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Borrelia Burgdorferi Bound To Glutamic Acid And Zinc Length = 512

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 47/312 (15%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
            R R+ P P G+ HIG  +    N+ +A +  G   LR +DT+  +   +    +   ++
Sbjct: 25  TRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLK 84
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCH------QKSDEM 421
           WLG            Y PY  +  S  + Q   +A  LI+ G AY C+      ++  ++
Sbjct: 85  WLGISFDEGPVVGGDYAPYVQSQRSAIYKQ---YAKYLIESGHAYYCYCSPERLERIKKI 141
Query: 422 KGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ--DPVAYRIKFL 479
           +  N +P P  +R         E ++N LI + +  +R KI LE      D +  RI + 
Sbjct: 142 QNINKMP-PGYDRHCRNLSN--EEVENALIKKIKPVVRFKIPLEGDTSFDDILLGRITWA 198
Query: 480 PHHRTGDSWCI----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD---- 531
               + D   +     PTY   + + D +  ITH L  +E+ S    +  L  A      
Sbjct: 199 NKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPP 258
Query: 532 IYCPVQWEYG----RLNVNYTVVSKRKIAK--LIEENIVN-------DWDDPRLFTLTAL 578
           IYC +    G    +L+  +   + R+  +   + E I+N        +DD R F     
Sbjct: 259 IYCHLPMVMGNDGQKLSKRHGSTALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKND 318
Query: 579 RRRGFPPEAINK 590
             + F  E INK
Sbjct: 319 LEQFFSIEKINK 330

>pdb|2O5R|A Chain A, Crystal Structure Of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (Tm1351) From Thermotoga Maritima At 2.5 A Resolution Length = 481

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 136/355 (38%), Gaps = 72/355 (20%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G LH+G A+    NF +A    G   LR +DT+ E+ E ++   + + ++
Sbjct: 14  VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLXESLR 73
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEM------ 421
           WLG            + PY+ +   + +    E A +L+K+G AY  +   +E+      
Sbjct: 74  WLGLLWDEGPDVGGDHGPYRQSERVEIYR---EHAERLVKEGKAYYVYAYPEEIEEXREK 130
Query: 422 ------------KGFNPLPSPWRERPVEEN-----VKLFEAMKNGLIDEGEATLRMKITL 464
                       + F    +P R R  EE      V      K+ ++++    ++ ++  
Sbjct: 131 LLSEGKAPHYSQEXFEKFDTPERRREYEEKGLRPAVFFKXPRKDYVLND---VVKGEVVF 187
Query: 465 EEGK-QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSY 523
           + G   D V  R   L            PTY++   + D +  ITH +   +  S     
Sbjct: 188 KTGAIGDFVIXRSNGL------------PTYNFACVVDDXLXEITHVIRGDDHLSNTLRQ 235
Query: 524 YWLCNALDIYCPVQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582
             L  A +   PV       L  +   +SKR  A  +E                A R  G
Sbjct: 236 LALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVE----------------AFRDXG 279
Query: 583 FPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVN 637
           + PEA+  + A +G +  +      + E +    L+  +P    + DP  L   N
Sbjct: 280 YLPEALVNYLALLGWSHPEGKELLTLEELISSFSLDRLSPN-PAIFDPQKLKWXN 333

>pdb|3PNY|A Chain A, Structure Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis In Space Group P21 Length = 505

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 120/310 (38%), Gaps = 61/310 (19%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G  H+G  +    N+ YA    G    R +DT+ +++ E+ +  + D ++
Sbjct: 22  VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL 427
           WLG            Y PY+ +  ++ +  +     +L+  G AY      +E++     
Sbjct: 82  WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEA---- 134
Query: 428 PSPWRERPVEENVK---------LFEAMKNGLIDEGE---ATLRM---KITLEEGKQDPV 472
               R      N K         L +A +   + EG      LRM    +   +  + PV
Sbjct: 135 ----RHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 190
Query: 473 AYRIKFLPH----HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
            +    +P       +GD     P Y   +   D++  ITH L  ++          L  
Sbjct: 191 TFAAGSVPDFALTRASGD-----PLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 245
Query: 529 ALDIYCPVQWEYGRLNVNYTVVSK--RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
           AL I   V     +     TV+ +  +K++K           DP+   L A R RGF PE
Sbjct: 246 AL-IRIGVAERIPKFAHLPTVLGEGTKKLSK----------RDPQ-SNLFAHRDRGFIPE 293
Query: 587 AINKFCARMG 596
            +  + A +G
Sbjct: 294 GLLNYLALLG 303

>pdb|2JA2|A Chain A, Mycobacterium Tuberculosis Glutamyl-Trna Synthetase Length = 498

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 120/310 (38%), Gaps = 61/310 (19%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G  H+G  +    N+ YA    G    R +DT+ +++ E+ +  + D ++
Sbjct: 7   VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 66
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL 427
           WLG            Y PY+ +  ++ +  +     +L+  G AY      +E++     
Sbjct: 67  WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEA---- 119
Query: 428 PSPWRERPVEENVK---------LFEAMKNGLIDEGE---ATLRM---KITLEEGKQDPV 472
               R      N K         L +A +   + EG      LRM    +   +  + PV
Sbjct: 120 ----RHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 175
Query: 473 AYRIKFLPH----HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
            +    +P       +GD     P Y   +   D++  ITH L  ++          L  
Sbjct: 176 TFAAGSVPDFALTRASGD-----PLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230
Query: 529 ALDIYCPVQWEYGRLNVNYTVVSK--RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
           AL I   V     +     TV+ +  +K++K           DP+   L A R RGF PE
Sbjct: 231 AL-IRIGVAERIPKFAHLPTVLGEGTKKLSK----------RDPQ-SNLFAHRDRGFIPE 278
Query: 587 AINKFCARMG 596
            +  + A +G
Sbjct: 279 GLLNYLALLG 288

>pdb|3PNV|A Chain A, V369m Mutant Of Glutamyl-Trna Synthetase From Mycobacterium Tuberculosis Length = 505

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 120/310 (38%), Gaps = 61/310 (19%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G  H+G  +    N+ YA    G    R +DT+ +++ E+ +  + D ++
Sbjct: 22  VRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALR 81
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPL 427
           WLG            Y PY+ +  ++ +  +     +L+  G AY      +E++     
Sbjct: 82  WLGLDWDEGPEVGGPYGPYRQSQRAEIYRDVL---ARLLAAGEAYHAFSTPEEVEA---- 134
Query: 428 PSPWRERPVEENVK---------LFEAMKNGLIDEGE---ATLRM---KITLEEGKQDPV 472
               R      N K         L +A +   + EG      LRM    +   +  + PV
Sbjct: 135 ----RHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPV 190
Query: 473 AYRIKFLPH----HRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
            +    +P       +GD     P Y   +   D++  ITH L  ++          L  
Sbjct: 191 TFAAGSVPDFALTRASGD-----PLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 245
Query: 529 ALDIYCPVQWEYGRLNVNYTVVSK--RKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPE 586
           AL I   V     +     TV+ +  +K++K           DP+   L A R RGF PE
Sbjct: 246 AL-IRIGVAERIPKFAHLPTVLGEGTKKLSK----------RDPQ-SNLFAHRDRGFIPE 293
Query: 587 AINKFCARMG 596
            +  + A +G
Sbjct: 294 GLLNYLALLG 303

>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From Burkholderia Thailandensis Bound To L-Glutamate Length = 490

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VRTRF P P G +H+G+ ++    + +A    G   LR +DT+ E+  ++    I + + 
Sbjct: 26  VRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMA 85
Query: 380 WLGYK----PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERP 435
           WLG      PY      D + ++     ++ +KGL Y  +  ++E+           E+P
Sbjct: 86  WLGLDYDEGPYYQMQRMDRYREVL---AQMQEKGLVYPXYMSTEELDALRERQRAAGEKP 142

>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 592

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G LH+G A+    N+ +A    G   LR +DT+ E+   ++   I + ++
Sbjct: 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 189
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLA-YVCHQKSD---EMKG 423
           W G            + PY+ +   + +    E+A KL++   A YV + K D   E+  
Sbjct: 190 WCGLDWDEGPDIGGDFGPYRQSERLEIYR---EYAEKLVEDKRAYYVVYDKEDPSKELFT 246
Query: 424 FNPLPSPWRER--PVEENVKL------FEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
               P  ++E+  PV    K+      FE +  G ++   +TL   I ++          
Sbjct: 247 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------- 299
Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
                          +PTY++   + D +  I+H    ++  S       +  A     P
Sbjct: 300 ---------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 344
Query: 536 VQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594
           V       L  + T +SKR  A  +E                  RR G    A+  + A 
Sbjct: 345 VFMHIPLILGSDRTPLSKRHGATSVEH----------------FRREGILSRALMNYLAL 388
Query: 595 MG 596
           +G
Sbjct: 389 LG 390

>pdb|3AKZ|B Chain B, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With Trnagln And A Glutamyl-Amp Analog Length = 487

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G LH+G A+    N+ +A    G   LR +DT+ E+   ++   I + ++
Sbjct: 25  VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 84
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLA-YVCHQKSD---EMKG 423
           W G            + PY+ +   + +    E+A KL++   A YV + K D   E+  
Sbjct: 85  WCGLDWDEGPDIGGDFGPYRQSERLEIYR---EYAEKLVEDKRAYYVVYDKEDPSKELFT 141
Query: 424 FNPLPSPWRER--PVEENVKL------FEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
               P  ++E+  PV    K+      FE +  G ++   +TL   I ++          
Sbjct: 142 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------- 194
Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
                          +PTY++   + D +  I+H    ++  S       +  A     P
Sbjct: 195 ---------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 239
Query: 536 VQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594
           V       L  + T +SKR  A  +E                  RR G    A+  + A 
Sbjct: 240 VFMHIPLILGSDRTPLSKRHGATSVEH----------------FRREGILSRALMNYLAL 283
Query: 595 MG 596
           +G
Sbjct: 284 LG 285

>pdb|3AFH|A Chain A, Crystal Structure Of Thermotoga Maritima Nondiscriminating Glutamyl- Trna Synthetase In Complex With A Glutamyl-Amp Analog Length = 488

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 115/302 (38%), Gaps = 66/302 (21%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           VR RF P P G LH+G A+    N+ +A    G   LR +DT+ E+   ++   I + ++
Sbjct: 26  VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLR 85
Query: 380 WLG------------YKPYQITHSSDYFHQLYEWAVKLIKKGLA-YVCHQKSD---EMKG 423
           W G            + PY+ +   + +    E+A KL++   A YV + K D   E+  
Sbjct: 86  WCGLDWDEGPDIGGDFGPYRQSERLEIYR---EYAEKLVEDKRAYYVVYDKEDPSKELFT 142
Query: 424 FNPLPSPWRER--PVEENVKL------FEAMKNGLIDEGEATLRMKITLEEGKQDPVAYR 475
               P  ++E+  PV    K+      FE +  G ++   +TL   I ++          
Sbjct: 143 TYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNG------- 195
Query: 476 IKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP 535
                          +PTY++   + D +  I+H    ++  S       +  A     P
Sbjct: 196 ---------------FPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240
Query: 536 VQWEYGR-LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCAR 594
           V       L  + T +SKR  A  +E                  RR G    A+  + A 
Sbjct: 241 VFMHIPLILGSDRTPLSKRHGATSVEH----------------FRREGILSRALMNYLAL 284
Query: 595 MG 596
           +G
Sbjct: 285 LG 286

>pdb|1J09|A Chain A, Crystal Structure Of Thermus Thermophilus Glutamyl-Trna Synthetase Complexed With Atp And Glu Length = 468

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 118/308 (38%), Gaps = 62/308 (20%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK----EEEKFFTGIK 375
           V TR  P P G  H+G A     N+ +A  + G   +R +DT+  +     EE+    +K
Sbjct: 2   VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 376 DMVQWLGYK---------PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP 426
               WLG           P+     S+      ++A +L+K+G AY   +  +E++    
Sbjct: 62  ----WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRK 117
Query: 427 LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKI------TLEEGKQDPVAYRIKFLP 480
               +  R    N+   EA +     E    +R+K+       +++  +  V Y  + +P
Sbjct: 118 EKGGYDGR--ARNIPPEEAEERARRGEPH-VIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA---LDIYCPVQ 537
                 S   YPTY   + + D +  +T  +  +E         WL +    + +Y    
Sbjct: 175 DVVLLKS-DGYPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPIHVLLYRAFG 224
Query: 538 WEYGRL-------NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINK 590
           WE  R        N + T +SKRK       +   DW           +  GF PEA+  
Sbjct: 225 WEAPRFYHMPLLRNPDKTKISKRK------SHTSLDW----------YKAEGFLPEALRN 268
Query: 591 FCARMGVT 598
           +   MG +
Sbjct: 269 YLCLMGFS 276

>pdb|1G59|A Chain A, Glutamyl-Trna Synthetase Complexed With Trna(Glu). Length = 468

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 117/308 (37%), Gaps = 62/308 (20%)
Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEK----EEEKFFTGIK 375
           V TR  P P G  H+G A     N+ +A  + G   +R +DT+  +     EE+    +K
Sbjct: 2   VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61
Query: 376 DMVQWLGYK---------PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP 426
               WLG           P      S+      ++A +L+K+G AY   +  +E++    
Sbjct: 62  ----WLGLSYDEGPDVAAPTGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRK 117
Query: 427 LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKI------TLEEGKQDPVAYRIKFLP 480
               +  R    N+   EA +     E    +R+K+       +++  +  V Y  + +P
Sbjct: 118 EKGGYDGR--ARNIPPEEAEERARRGEPH-VIRLKVPRPGTTEVKDELRGVVVYDNQEIP 174
Query: 481 HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA---LDIYCPVQ 537
                 S   YPTY   + + D +  +T  +  +E         WL +    + +Y    
Sbjct: 175 DVVLLKS-DGYPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPIHVLLYRAFG 224
Query: 538 WEYGRL-------NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINK 590
           WE  R        N + T +SKRK       +   DW           +  GF PEA+  
Sbjct: 225 WEAPRFYHMPLLRNPDKTKISKRK------SHTSLDW----------YKAEGFLPEALRN 268
Query: 591 FCARMGVT 598
           +   MG +
Sbjct: 269 YLCLMGFS 276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	832
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	0.0
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	0.0
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	0.0
3tl4_X	187	Glutaminyl-tRNA synthetase; glutamine, appended do	4e-62
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	1e-12
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	2e-11
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	3e-11
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	2e-10
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	2e-09
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	2e-09
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	3e-09

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553

 Score =  830 bits (2146), Expect = 0.0
 Identities = 233/546 (42%), Positives = 323/546 (59%), Gaps = 27/546 (4%)

Query: 306 HDLLREHIK-YTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE 364
             ++ E +       V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP 
Sbjct: 12  RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPV 71

Query: 365 KEEEKFFTGIKDMVQWLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMK- 422
           KE+ ++   IK+ V+WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++++ 
Sbjct: 72  KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIRE 131

Query: 423 --GFNPLP---SPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAY 474
             G    P   SP+R+R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV Y
Sbjct: 132 YRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLY 191

Query: 475 RIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC 534
           RIKF  HH+TG+ WCIYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I  
Sbjct: 192 RIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251

Query: 535 -PVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCA 593
            P Q+E+ RLN+ YTV+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC 
Sbjct: 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCK 311

Query: 594 RMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFP 653
           R+GVT     +    LE+ +RE LN+ APR M VIDP+ L I N+         T+P+ P
Sbjct: 312 RIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHP 369

Query: 654 NDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNG 713
           N    GS  + F   I+I+++DF+    K Y+RL  G+ V LR A  V++ ++V     G
Sbjct: 370 NKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAY-VIKAERVEKDAEG 428

Query: 714 AITSI------DVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPEDTYQVP 765
            IT+I      D  +       K K  IHWV  A  + +E+RLY  LF   NP       
Sbjct: 429 NITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGA----A 484

Query: 766 EGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDRDSNINHKPVVNLTVSL 825
           + +LS INP+SL +  G+A+           FQFER G+F +D   +   KPV N TV L
Sbjct: 485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGL 544

Query: 826 KEDSGK 831
           ++   K
Sbjct: 545 RDTWAK 550

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851

 Score =  818 bits (2115), Expect = 0.0
 Identities = 216/633 (34%), Positives = 308/633 (48%), Gaps = 72/633 (11%)

Query: 265 QENGFEFVEENVNIGDLMKKLPFHKPGENFKSD---GYVVTEQT-HDLLREHIKYTG-GK 319
           Q+ G  F   +  I   M   P    G +  +      +V      +++   ++     +
Sbjct: 7   QDRGAPFSGRSPRILTRMTDAPRPTAGADAPARPPAAPLVAPNFITEIIERDLEAGKYPR 66

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TRFPP+P+G  H+GH  A  ++F  A  + G   LR DDTNPE   +++   I D ++
Sbjct: 67  VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLK 126

Query: 380 WLGYK-PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNP------LPSPWR 432
           WLG        ++SDYF + Y +A +LI++G AYV     +E+            PSP+R
Sbjct: 127 WLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYR 186

Query: 433 ERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWC 489
           +R VEEN+ L   MK G   +GE  LR KI L       +DPV YRI   PH RT D W 
Sbjct: 187 DRSVEENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWH 246

Query: 490 IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC-PVQWEYGRLNVNYT 548
           IYP YD+ H L D+IE +THS+C+ EF   R+ Y WL   L+    P Q+E+GR  + YT
Sbjct: 247 IYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYT 306

Query: 549 VVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNM 608
           + SKRK+ +L++   V+ WDDPR+ TL A RR G  PEA+  F A++GV+     V   +
Sbjct: 307 ITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAV 366

Query: 609 LEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATK---------- 658
            E  VR+ LN  APRVM V+DP+ + + N D    +   ++P +P+D  +          
Sbjct: 367 YENAVRDDLNHRAPRVMAVLDPVKVTLTNLDG---EKTLSLPYWPHDVVRDSPDGLVGMP 423

Query: 659 ---------GSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNT 709
                       D+   R +YIE+ DF     KG++RL PG  V LR AG ++  D   T
Sbjct: 424 GGGRVAPEEAVRDVPLTRELYIERDDFSPAPPKGFKRLTPGGTVRLRGAG-IIRADDFGT 482

Query: 710 KCNGAITSIDVKATPVDVDNKPKAFIHWV--ARPISIEVRLYSTLFLHKNPED------- 760
              G +T I  +AT +  D K    IHWV   R +  E RLY  LF   +PE        
Sbjct: 483 DEAGQVTHI--RATLLGEDAKAAGVIHWVSAERALPAEFRLYDRLFRVPHPEGENADVED 540

Query: 761 -----------------TYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVG 803
                            T  V +G++  + PDSL+V  GY +    G     R+QFER G
Sbjct: 541 DSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQG 600

Query: 804 FFTVDRDSNINH-----KPVVNLTVSLKEDSGK 831
           +F  D              V    ++LK+  GK
Sbjct: 601 YFWRDPVELERVDSREDALVFGRIITLKDTWGK 633

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553

 Score =  645 bits (1667), Expect = 0.0
 Identities = 142/612 (23%), Positives = 234/612 (38%), Gaps = 76/612 (12%)

Query: 209 MQEVR-TLLKWADGKYIKSEVDVQVLNLLGPKTEADLAPVPKVKVNEKKSKPKSNETQEN 267
           M  V   + ++A    +K         ++G            V  NE + +  + + +E 
Sbjct: 1   MVPVEDLVYRYALLNAVKHRGRANPGAVMG-----------AVMSNEPELRKMAPQVKEA 49

Query: 268 GFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPE 327
               VE   ++    ++    + G           +Q        +    G+V  RF P 
Sbjct: 50  VEAAVERVNSLSPEEQQQEMERLGLEITER-----KQKKRKGLRELAGVKGEVVLRFAPN 104

Query: 328 PNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ 387
           P+G LHIGHA+A  +N  YA  ++G   LR +DT+P + + + +  I   ++WLG +  +
Sbjct: 105 PSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDE 164

Query: 388 ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF--NPLPSPWRERPVEENVKLFEA 445
               SD     YE+  KLI++G AYVC  + +E +           R     EN++ +  
Sbjct: 165 TVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWRE 224

Query: 446 MKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCD 502
           M      EG A +R+K  L       +D V+ RI    H RTG  + +YP  +++  + D
Sbjct: 225 MFEM--KEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDD 282

Query: 503 SIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEEN 562
            +  +TH L  K+  + R    +L   L    P    YGRL ++   +S     + I   
Sbjct: 283 HLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAREGILRG 342

Query: 563 IVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAP 622
             + WDDPRL TL A+ RRG  PEAI K    +GV  A + +S   +  + R +L + A 
Sbjct: 343 EYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEAR 402

Query: 623 RVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEK 682
           R     DP+ L +V         +   P  P+    G+  ++    +Y+   D     E 
Sbjct: 403 RYFFAADPVKLEVVGLPG---PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDLG---EG 456

Query: 683 GYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWV--AR 740
             R         L  A         N   +G       +    +      + IHWV    
Sbjct: 457 PLR---------LIDAV--------NVIYSGGELRYHSEGIE-EARELGASMIHWVPAES 498

Query: 741 PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFE 800
            +  EV +     +                           G  ++    ++  D  Q E
Sbjct: 499 ALEAEVIMPDASRVR--------------------------GVIEADASELEVDDVVQLE 532

Query: 801 RVGFFTVDRDSN 812
           R GF  +D    
Sbjct: 533 RFGFARLDSAGP 544

>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae} Length = 187

 Score =  206 bits (526), Expect = 4e-62
 Identities = 57/183 (31%), Positives = 101/183 (55%), Gaps = 2/183 (1%)

Query: 63  DSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIK 122
           + +   F  VG  +KK KE +KN+ +S  L + I+E       + +   +L+++LAS +K
Sbjct: 5   EELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWN-KSTRALVHNLASFVK 63

Query: 123 SQSSIHLPLLVKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIE 182
                   L+V  I++  L ++L+VDAA +YV ++  A  +  +  + GVG+ +T + + 
Sbjct: 64  GTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVR 123

Query: 183 ETVSKVVEKHKAELLDKRYRYNLGLVMQ-EVRTLLKWADGKYIKSEVDVQVLNLLGPKTE 241
             V + ++++K  +L +RY+   G+    +    LKWAD +  K  +D +VL LLGPK E
Sbjct: 124 NYVMQYIQENKERILTERYKLVPGIFADVKNLKELKWADPRSFKPIIDQEVLKLLGPKDE 183

Query: 242 ADL 244
            DL
Sbjct: 184 RDL 186

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Length = 298

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 12/130 (9%)

Query: 316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIK 375
           T  +   RF P P+G LH G   A   ++  A A  G   +R +D +P +E       I 
Sbjct: 2   TDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETIL 61

Query: 376 DMVQWLGYKP-----YQITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEMKGFNPL-P 428
             ++  G        +Q        H  Y E    L ++GL+Y C      ++    +  
Sbjct: 62  RQLEHYGLHWDGDVLWQSQR-----HDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYD 116

Query: 429 SPWRERPVEE 438
              R      
Sbjct: 117 GHCRVLHHGP 126

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468

 Score = 66.0 bits (162), Expect = 2e-11
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 78/314 (24%)

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TR  P P G  H+G A     N+ +A  + G   +R +DT+  +        I   ++
Sbjct: 2   VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61

Query: 380 WLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVC---HQKSDEMK 422
           WLG            + PY Q    S+    LY ++A +L+K+G AY      ++ ++++
Sbjct: 62  WLGLSYDEGPDVGGPHGPYRQ----SERLP-LYQKYAEELLKRGWAYRAFETPEELEQIR 116

Query: 423 GFNPL-PSPWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKITLEEGK---QDPVAYRIK 477
                     R  P EE               GE   +R+K+    G    +D +   + 
Sbjct: 117 KEKGGYDGRARNIPPEE--------AEERARRGEPHVIRLKVP-RPGTTEVKDELRGVVV 167

Query: 478 FLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA--- 529
           +   ++      +     YPTY   + + D +  +T  +  +E         WL +    
Sbjct: 168 Y--DNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEE---------WLVSTPIH 216

Query: 530 LDIYCPVQWE---YGR----LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRG 582
           + +Y    WE   +       N + T +SKRK    ++                  +  G
Sbjct: 217 VLLYRAFGWEAPRFYHMPLLRNPDKTKISKRKSHTSLDW----------------YKAEG 260

Query: 583 FPPEAINKFCARMG 596
           F PEA+  +   MG
Sbjct: 261 FLPEALRNYLCLMG 274

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Length = 490

 Score = 65.7 bits (161), Expect = 3e-11
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 19/135 (14%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
            VRTRF P P G +H+G+ ++    + +A    G   LR +DT+ E+  ++    I + +
Sbjct: 25  PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGM 84

Query: 379 QWLGYKP-----YQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEM---------KGF 424
            WLG        YQ         +  E   ++ +KGL Y C+  ++E+          G 
Sbjct: 85  AWLGLDYDEGPYYQ----MQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGE 140

Query: 425 NPL-PSPWRERPVEE 438
            P     WR  P + 
Sbjct: 141 KPRYDGTWRPEPGKV 155

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492

 Score = 64.1 bits (157), Expect = 9e-11
 Identities = 75/318 (23%), Positives = 114/318 (35%), Gaps = 82/318 (25%)

Query: 320 VRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           VR R  P P G LHIG A+ A+  N+ YA    G   LR +DT+ E+   ++   I + +
Sbjct: 2   VRVRLAPSPTGNLHIGTARTAV-FNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGL 60

Query: 379 QWLGYK----PY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM---------KG 423
           QWLG      PY Q    SD    LY +    L+ KGLAY C+   +E+         KG
Sbjct: 61  QWLGLTWDEGPYFQ----SDRLD-LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKG 115

Query: 424 FNPL-PSPWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKITLEEGK---QDPVAYRIKF 478
             P   +  R    EE        +      G    +R KI  ++ +   QD V  R+ +
Sbjct: 116 QAPRYDNRHRHLTPEE--------QAAFEAAGRTPVIRFKIE-DDRQIEWQDLVRGRVSW 166

Query: 479 LPHHRTGDSWCI----------YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN 528
                 G    I          YP Y+    + D    IT  +  ++          + N
Sbjct: 167 -QGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGED---------HIGN 216

Query: 529 A---LDIYCPVQWE---YGR----LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTAL 578
               + +Y  +      +      LN     +SKR     I +                 
Sbjct: 217 TPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVTSISD----------------F 260

Query: 579 RRRGFPPEAINKFCARMG 596
           R  G+   A+  +   +G
Sbjct: 261 RAMGYLAPALANYMTLLG 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 69/509 (13%), Positives = 147/509 (28%), Gaps = 126/509 (24%)

Query: 365 KEEEKFFTGIKDMVQ------W-LGYKPYQITHS--SDYFHQLYEWAVKLIKKGLAYVCH 415
           KEE       KD V       W L  K  ++      +     Y++    +   +     
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----LMSPIKTEQR 103

Query: 416 QKSDEMKGF----NPL---PSPWRERPVEENVKLFEAMKNGLIDEGEATLR--MKITLE- 465
           Q S   + +    + L      + +  V   ++ +  ++  L++     LR    + ++ 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLE-----LRPAKNVLIDG 157

Query: 466 ---EGKQ---DPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLC-DSIEHITHSLC---TKE 515
               GK      V    K          W      +  +C   +++  +   L       
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 516 FQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTL 575
           + SR           +I   +      L          +   L+  N+    +       
Sbjct: 213 WTSRSDHSS------NIKLRIHSIQAELR-RLLKSKPYENCLLVLLNV---QN------- 255

Query: 576 TALRRRGFPPEAINKF---CARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVVIDPLP 632
                     +A N F   C ++ +T     V+  +  A    +  D     +   +   
Sbjct: 256 ---------AKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 633 LHIVNFDQLNVDTKFTVPDFPNDATKGS-------------HDIQFDRTIYIEKSDFKVI 679
           L ++ +  L+   +    D P +    +                 +D   ++       I
Sbjct: 306 L-LLKY--LDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 680 QEKGYRRLAPGQGVGLR--YAGL------------VLEV--DKVNTKCNGAITSIDVKAT 723
            E     L P +    R  +  L            +L +    V       + +   K +
Sbjct: 359 IESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 724 PVDVDNKPKAF-IHWVARPISIEVRLYSTLFLHKNPEDTYQVPEGY-LSDINPDSLKVSI 781
            V+   K     I  +   + +++     L  H++  D Y +P+ +   D+ P  L    
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLD--- 470

Query: 782 GYADSGFVG-----VKPYDRFQFERVGFF 805
            Y  S  +G     ++  +R    R+ F 
Sbjct: 471 QYFYS-HIGHHLKNIEHPERMTLFRMVFL 498

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 62/465 (13%), Positives = 122/465 (26%), Gaps = 182/465 (39%)

Query: 2   THRTLLEVMRSTY------PEPFCHAYQYIPIHMPGSQDGKPLDNLLFCQK--------- 46
           +  T+LE+++                   I + +      +     L   K         
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVL 250

Query: 47  --VQNEPKVVS--NI-----MT----EIADSMISA--------FLSVGLNEKKAKETLKN 85
             VQN  K  +  N+     +T    ++ D + +A          S+ L   + K  L  
Sbjct: 251 LNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-- 307

Query: 86  ETLSTYLKQAI----EEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL 141
                YL         E    +P  L      +    +   +          K++    L
Sbjct: 308 ---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---------WKHVNCDKL 355

Query: 142 DSTLRVDAALEYVLSHVNAVNEKELEASCGV---GVIVTS------------EDIEETVS 186
            + +         L+ +     +++     V      + +             D+   V+
Sbjct: 356 TTIIESS------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 187 KVVEKHKAELLDKRYRYNLGLVMQEVRTLLKWADGKYIKSEVDVQVLNLLGPKTEADLAP 246
           K+   HK  L++K+                   +     S   + +          +L  
Sbjct: 410 KL---HKYSLVEKQ-----------------PKESTI--SIPSIYL----------EL-- 435

Query: 247 VPKVKVNEKKSKPKSNETQENGFEFVEENVNIGDLMKKLPFHKPGENFKSDGYVVTEQTH 306
             KVK+  + +  +S          V+      ++ K             D Y       
Sbjct: 436 --KVKLENEYALHRS---------IVDHY----NIPKTFDSDDLIPP-YLDQYFY----- 474

Query: 307 DLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAIN------------INFGYAAAHNGIC 354
                HI +                    H K I             ++F +        
Sbjct: 475 ----SHIGH--------------------HLKNIEHPERMTLFRMVFLDFRFLEQK---- 506

Query: 355 FLRYDDTNPEKEEEKFFTGIKDMVQWLG-YKPYQITHSSDYFHQL 398
            +R+D T            I + +Q L  YKPY I  +   + +L
Sbjct: 507 -IRHDSTAWNAS-----GSILNTLQQLKFYKPY-ICDNDPKYERL 544

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Length = 481

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 70/319 (21%), Positives = 118/319 (36%), Gaps = 79/319 (24%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
            VR RF P P G LH+G A+    NF +A    G   LR +DT+ E+ E ++   + + +
Sbjct: 13  MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESL 72

Query: 379 QWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM--- 421
           +WLG            + PY Q    S+    +Y E A +L+K+G AY  +   +E+   
Sbjct: 73  RWLGLLWDEGPDVGGDHGPYRQ----SERVE-IYREHAERLVKEGKAYYVYAYPEEIEEM 127

Query: 422 ------KGFNP-LPSPWRERPVEENVKLFEAMKNGLIDEGEA-TLRMKITLEEGK-QDPV 472
                 +G  P       E+            +    ++G    +  K+  ++    D V
Sbjct: 128 REKLLSEGKAPHYSQEMFEK------FDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVV 181

Query: 473 AYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLC 527
              + F         + I      PTY++   + D +  ITH +   +          L 
Sbjct: 182 KGEVVF--KTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDD---------HLS 230

Query: 528 NA---LDIYCPVQWE---YGR----LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTA 577
           N    L +Y   +     +      L  +   +SKR  A  +E                 
Sbjct: 231 NTLRQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVEA---------------- 274

Query: 578 LRRRGFPPEAINKFCARMG 596
            R  G+ PEA+  + A +G
Sbjct: 275 FRDMGYLPEALVNYLALLG 293

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Length = 498

 Score = 60.2 bits (147), Expect = 2e-09
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 39/169 (23%)

Query: 319 KVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
            VR RF P P G  H+G  + A+  N+ YA    G    R +DT+ +++ E+ +  + D 
Sbjct: 6   TVRVRFCPSPTGTPHVGLVRTAL-FNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDA 64

Query: 378 VQWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVCHQKSDEM-- 421
           ++WLG            Y PY Q    S     +Y +   +L+  G AY      +E+  
Sbjct: 65  LRWLGLDWDEGPEVGGPYGPYRQ----SQRAE-IYRDVLARLLAAGEAYHAFSTPEEVEA 119

Query: 422 ----KGFNPLPS---PWRERPVEENVKLFEAMKNGLIDEGE-ATLRMKI 462
                G NP        R     +        +   + EG    +R+++
Sbjct: 120 RHVAAGRNPKLGYDNFDRHLTDAQ--------RAAYLAEGRQPVVRLRM 160

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 21/120 (17%)

Query: 310 REHIKYTGGKVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEE 368
            + I+     VR RF P P G LH+G A+ A+  N+ +A    G   LR +DT+ E+   
Sbjct: 120 PKKIRRCFELVRVRFAPSPTGHLHVGGARTAL-FNWMFARKEGGKFILRIEDTDTERSSR 178

Query: 369 KFFTGIKDMVQWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVC 414
           ++   I + ++W G            + PY Q    S+    +Y E+A KL++   AY  
Sbjct: 179 EYEQQILESLRWCGLDWDEGPDIGGDFGPYRQ----SERLE-IYREYAEKLVEDKRAYYV 233

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Length = 488

 Score = 59.5 bits (145), Expect = 3e-09
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 21/111 (18%)

Query: 319 KVRTRFPPEPNGILHIGHAK-AININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
            VR RF P P G LH+G A+ A+  N+ +A    G   LR +DT+ E+   ++   I + 
Sbjct: 25  LVRVRFAPSPTGHLHVGGARTAL-FNWMFARKEGGKFILRIEDTDTERSSREYEQQILES 83

Query: 378 VQWLG------------YKPY-QITHSSDYFHQLY-EWAVKLIKKGLAYVC 414
           ++W G            + PY Q    S+    +Y E+A KL++   AY  
Sbjct: 84  LRWCGLDWDEGPDIGGDFGPYRQ----SERLE-IYREYAEKLVEDKRAYYV 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	832
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	100.0
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	100.0
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	100.0
4gri_A	512	Glutamate--tRNA ligase; structural genomics, seatt	100.0
2ja2_A	498	Glutamyl-tRNA synthetase; non-discriminating gluta	100.0
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	100.0
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	100.0
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	100.0
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	100.0
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	100.0
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	100.0
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	100.0
3tl4_X	187	Glutaminyl-tRNA synthetase; glutamine, appended do	100.0
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.92
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	99.79
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	99.73
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	99.67
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	99.67
2dlc_X	394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	99.63
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	99.6
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	99.5
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	99.38
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	99.38
2cyb_A	323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	99.37
1n3l_A	372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	99.35
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	99.34
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	99.29
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	99.03
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	98.93
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	98.82
2zue_A	629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	98.71
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	98.65
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	98.64
2cya_A	364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	98.54
2zp1_A	314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	98.47
2g36_A	340	Tryptophanyl-tRNA synthetase; TM0492, structural g	98.43
1i6k_A	328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	98.26
2yy5_A	348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	98.24
2el7_A	337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	98.07
1yi8_B	351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	98.04
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	97.49
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	97.43
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	97.27
3jxe_A	392	Tryptophanyl-tRNA synthetase; adenosine triphospha	96.96
1h3f_A	432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	96.9
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	96.84
3al0_B	482	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	96.76
3ip4_B	483	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	96.73
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	96.73
2ip1_A	432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	96.69
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	96.67
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	96.49
2cyc_A	375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	95.98
2jan_A	432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	95.95
3i05_A	395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	95.95
3hzr_A	386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	95.84
3tzl_A	322	Tryptophanyl-tRNA synthetase; structural genomics,	95.65
3h0l_B	478	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	95.43
3foc_A	451	Tryptophanyl-tRNA synthetase; structural genomics,	95.24
3hv0_A	393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	95.16
1zq1_C	633	Glutamyl-tRNA(Gln) amidotransferase subunit E; X-R	95.11
3a04_A	372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	95.06
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	94.86
2j5b_A	348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	94.39
3prh_A	388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	93.98
1jil_A	420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	93.72
3sz3_A	341	Tryptophanyl-tRNA synthetase; structural genomics,	93.16
2d6f_C	619	Glutamyl-tRNA(Gln) amidotransferase subunit E; lig	92.98
3tze_A	406	Tryptophanyl-tRNA synthetase; structural genomics,	92.83
3vgj_A	373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	92.04
3n9i_A	346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	91.9
1r6t_A	477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	91.25
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	90.87
1ng6_A	148	Hypothetical protein YQEY; structural genomics, do	90.57
1r6u_A	437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	89.43
2yxn_A	322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	88.29
3p0j_A	690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	86.92

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=100.00  E-value=4.7e-140  Score=1200.45  Aligned_cols=518  Identities=44%  Similarity=0.801  Sum_probs=482.4

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~  384 (832)
                      .+++++.|+.. .++||||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus        12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~   91 (553)
T 1qtq_A           12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH   91 (553)
T ss_dssp             HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence            56777777764 34799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      |+ .+++||+||++||++|++||++|+||+|+||++||++++      +..|+||+++++|++.+|++|.+|.+.+|+++
T Consensus        92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~  171 (553)
T 1qtq_A           92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC  171 (553)
T ss_dssp             CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred             CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence            96 789999999999999999999999999999999998653      34678999999999999999999999999999


Q ss_pred             EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCC-
Q psy17575        458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIY-  533 (832)
Q Consensus       458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~-  533 (832)
                      ||+|+++.+.   ..|+|+||+...+|++++|.|++|||||||||||||+|||||||||+||.+|+++|.||+++||++ 
T Consensus       172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~  251 (553)
T 1qtq_A          172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV  251 (553)
T ss_dssp             EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred             EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence            9999998754   379999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        534 CPVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       534 ~P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                      .|.||+|+||+++|+|||||+++++|++|.|+||||||++||++||++||+|+||++||+.+||+..+..+++..|++++
T Consensus       252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~  331 (553)
T 1qtq_A          252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI  331 (553)
T ss_dssp             CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred             CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCee
Q psy17575        614 REVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGV  693 (832)
Q Consensus       614 r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V  693 (832)
                      |..|++.++|+|||+||+||.|+|+|  +.++.+++|+||+++++|+|.++|+++||||++||++.++++||||+||++|
T Consensus       332 ~~~l~~~~~r~~av~d~~Kl~~~N~~--~~~~~~~~p~~p~~~~~g~r~~~~~~~i~ie~~Df~e~~~~~~~rl~~g~~v  409 (553)
T 1qtq_A          332 REDLNENAPRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEV  409 (553)
T ss_dssp             HHHHHHHSCEECEESSEEEEEBTTCC--SSCEEEEEESCSSCGGGCEEEEEECSEEEEETTTEESSCCTTCCSEETTSEE
T ss_pred             HhCcccccccccceeccceEEEEcCC--CceEEEEecCCCCChHHhhhhHhhCceEEEEHHHhhccCccccccCCCCCEE
Confidence            99999999999999999999999987  3467899999999999999999999999999999999999999999999999


Q ss_pred             eeeecCceEEEeeEeecCCCCEEEEEEEEcCCC------CCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCC
Q psy17575        694 GLRYAGLVLEVDKVNTKCNGAITSIDVKATPVD------VDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVP  765 (832)
Q Consensus       694 ~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~------~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~  765 (832)
                      +||+|+ +|+|+++++|.+|+|++|+|+|++.+      +.+|+|++|||||+  +++||||+|++||++++|++.    
T Consensus       410 rL~~~~-~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~~~~~~~~~yd~L~~~~~p~~~----  484 (553)
T 1qtq_A          410 RLRNAY-VIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAA----  484 (553)
T ss_dssp             EETTSC-EEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEESTTCEEEEEEEECCSBSSSCGGGS----
T ss_pred             EeccEE-EEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecCCCEeEEEEecccccCCCCCCcC----
Confidence            999995 56899999999999999999998863      46889999999996  489999999999999999632    


Q ss_pred             CCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccCCCC
Q psy17575        766 EGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKEDSGK  831 (832)
Q Consensus       766 ~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~~~k  831 (832)
                      ++|+++|||+|++++.+++|+++.++++|++|||||+||||||+ +|+++ ++||||||+||++|+|
T Consensus       485 ~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~~~~~-~~vfnr~v~l~~~~~~  550 (553)
T 1qtq_A          485 DDFLSVINPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAE-KPVFNRTVGLRDTWAK  550 (553)
T ss_dssp             TTGGGGBCTTSEEEEEEEECGGGGGCCTTCEEEETTTEEEESCTTTCCSS-SCEEEEEEECCCC---
T ss_pred             cchhhhcCCcchhheeeEecHhHhhCCCCCEEEEEEeeEEEECcCCCCCC-CeeEEeEEEcccchhh
Confidence            57999999999999999999999999999999999999999997 78888 9999999999999987

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=100.00  E-value=3.6e-136  Score=1210.14  Aligned_cols=519  Identities=40%  Similarity=0.707  Sum_probs=481.1

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~  384 (832)
                      .++++++|+.. .++||||||||||||||||||||||+||++||++||+|+||||||||+|+.++|+++|++||+|||+.
T Consensus        52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~  131 (851)
T 2hz7_A           52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD  131 (851)
T ss_dssp             HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence            67888888863 34799999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      |+ .+++||+||++||++|++||++|+||+||||++||++++      +..|+||++++++++.+|++|.+|.+.+|+++
T Consensus       132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v  211 (851)
T 2hz7_A          132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV  211 (851)
T ss_dssp             CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred             CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence            96 789999999999999999999999999999999998652      34678999999999999999999999999999


Q ss_pred             EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575        458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC  534 (832)
Q Consensus       458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~  534 (832)
                      ||+|+++.+.   ..|+|+||+...+|+++|+.|++|||||||||||||+|||||||||.||.+|++.|.||+++||++.
T Consensus       212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~  291 (851)
T 2hz7_A          212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP  291 (851)
T ss_dssp             EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred             EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence            9999998764   3799999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             -CCcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        535 -PVQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       535 -P~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                       |.||+|+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+.+||++.+..+++..|++++
T Consensus       292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~  371 (851)
T 2hz7_A          292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV  371 (851)
T ss_dssp             CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred             CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             HHhhccCCCceeEEecCcceEEeecCCCCceeEEeecCCCCC-------------------CCCceeEEeecceeEEeCC
Q psy17575        614 REVLNDTAPRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPND-------------------ATKGSHDIQFDRTIYIEKS  674 (832)
Q Consensus       614 r~~l~~~a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~-------------------~~~G~~~v~~~~~iyIe~~  674 (832)
                      |+.|++.++|+|||+||+||.|+|+|+ +.  ++++|+||++                   |++|+|+|+|+++||||++
T Consensus       372 r~~l~~~~~r~~av~d~~Kl~~~N~~~-~~--~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~~~iyie~~  448 (851)
T 2hz7_A          372 RDDLNHRAPRVMAVLDPVKVTLTNLDG-EK--TLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTRELYIERD  448 (851)
T ss_dssp             HHHHHTTCCEECEESSEEEEEETTCCS-CE--EEEEESSCHHHHHTCTTSCEECSSSCEECGGGCEEEEEECSEEEEEGG
T ss_pred             HhcccccccccceEecceeEEEecCCC-Ce--EEEecCCcccccccccccccccccccccCccCceEEEEEcCeEEEEHH
Confidence            999999999999999999999999987 54  8999999999                   9999999999999999999


Q ss_pred             ccccccccCccccCCCCeeeeeecCceEEEeeEeecCCCCEEEEEEEEcCCCCCCCCceEEEeccC--CceeEEEEcccc
Q psy17575        675 DFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKVNTKCNGAITSIDVKATPVDVDNKPKAFIHWVAR--PISIEVRLYSTL  752 (832)
Q Consensus       675 D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~~~~~~g~v~e~~~~~~~~~~~~k~k~~I~Wv~~--~~~~evr~y~~L  752 (832)
                      ||++.++++||||+||++|+||+|++ |+|+++++|.+|+|++|+|+|.  .+.+|+|++|||||.  ++++|||+|++|
T Consensus       449 Df~e~~~~~~~rl~~g~~vrL~~~~~-i~~~~~~kd~~g~v~~~~~~~~--~~~~k~k~~ihWv~~~~~~~~e~r~yd~L  525 (851)
T 2hz7_A          449 DFSPAPPKGFKRLTPGGTVRLRGAGI-IRADDFGTDEAGQVTHIRATLL--GEDAKAAGVIHWVSAERALPAEFRLYDRL  525 (851)
T ss_dssp             GBCSSCCTTCCSBCTTCEEEETTTEE-EEEEEEEECTTSCEEEEEEEEC--CTTCCCSCEECCEETTTCEEEEEEEECCS
T ss_pred             HhhhcccccceecCCCCEEEecCeEE-EEEEEEEecCCCCEEEEEEEEc--ccCCccCceEEEeecCCCeeEEEEecccc
Confidence            99999999999999999999999965 5799999999999999999995  346789999999996  489999999999


Q ss_pred             cCCCCCCCC------------------------CCCCCCccccCCCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEe
Q psy17575        753 FLHKNPEDT------------------------YQVPEGYLSDINPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVD  808 (832)
Q Consensus       753 f~~~~p~~~------------------------~~~~~~~~~~iN~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D  808 (832)
                      |++++|++.                        ...+++|+++|||+|++++.+++|+++.++++|++|||||+||||||
T Consensus       526 f~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~s~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D  605 (851)
T 2hz7_A          526 FRVPHPEGENADVEDDSAGPAEHEAEPGAGQETAPVSQGFMRYLTPDSLRVLRGYVEPSVAGDPADTRYQFERQGYFWRD  605 (851)
T ss_dssp             BSSSCTTCCC----------------------------CGGGGBCTTSEEEEEEEECGGGGGSCTTCEEEETTTEEEEEC
T ss_pred             cCCCCcccccccccccccccccccccccccccccccCccHHHhcCCccceeeeeEEchhhhhCCCCCEEEEEEeeEEEEc
Confidence            999999641                        01135799999999999999999999999999999999999999999


Q ss_pred             c------CCCCCCccEEEeeeccccCCCC
Q psy17575        809 R------DSNINHKPVVNLTVSLKEDSGK  831 (832)
Q Consensus       809 ~------~~~~~~~lv~n~~v~lk~~~~k  831 (832)
                      +      ||+++ ++|||||||||++|+|
T Consensus       606 ~~~~~~~~~~~~-~~vfnr~v~lk~~~~~  633 (851)
T 2hz7_A          606 PVELERVDSRED-ALVFGRIITLKDTWGK  633 (851)
T ss_dssp             HHHHHCC-------CEEEEEECSSCCC--
T ss_pred             cCCCccCCCCCC-ceEEEeecccccchhh
Confidence            7      88888 9999999999999987

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=5.4e-119  Score=1026.92  Aligned_cols=444  Identities=29%  Similarity=0.446  Sum_probs=398.1

Q ss_pred             hhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcccccc
Q psy17575        313 IKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQITHSS  392 (832)
Q Consensus       313 l~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~~~qS  392 (832)
                      |+.++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|++||+|||+.||++++||
T Consensus        90 L~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qS  169 (553)
T 3aii_A           90 LAGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQS  169 (553)
T ss_dssp             CSSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGG
T ss_pred             CCCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccc
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHcCCccccCCCHHHHhccC--CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---
Q psy17575        393 DYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN--PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---  467 (832)
Q Consensus       393 d~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~--~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---  467 (832)
                      +||+.||++|++||++|+||+|+||+++|++++  +.+|+||+++.+|++.+|++|++|  .+|+++||+|+++.+.   
T Consensus       170 dr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~  247 (553)
T 3aii_A          170 DRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPA  247 (553)
T ss_dssp             GGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGG
T ss_pred             cCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCC
Confidence            999999999999999999999999999998653  567999999999999999999999  5678999999998764   


Q ss_pred             CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccCCCC
Q psy17575        468 KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY  547 (832)
Q Consensus       468 ~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~g  547 (832)
                      ..|+|+||+...+||++||+||+|||||||||||||+|||||||||.||++|+++|.||+++||++.|.+|||++|+++|
T Consensus       248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g  327 (553)
T 3aii_A          248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDD  327 (553)
T ss_dssp             GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC---
T ss_pred             CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCC
Confidence            48999999988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHhhccCCCceeEE
Q psy17575        548 TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVREVLNDTAPRVMVV  627 (832)
Q Consensus       548 tkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~~l~~~a~R~~av  627 (832)
                      +|||||+++++|++|.|+||||||++||++||++||+|+||++||+.+||++++..|+++.|+++||++||++|||+|||
T Consensus       328 ~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V  407 (553)
T 3aii_A          328 VALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFA  407 (553)
T ss_dssp             ----CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEE
T ss_pred             ceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCceEEEeeE
Q psy17575        628 IDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGLVLEVDKV  707 (832)
Q Consensus       628 ~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~~~~~~~~  707 (832)
                      +||+||+|+|+|.   ++++++|+||++|++|+|+|+|+++||||++||+           + ++|+||+|++| .|+++
T Consensus       408 ~~p~kv~i~n~~~---~~~~~~p~hp~~~~~G~r~v~~~~~i~ie~~D~~-----------~-~~vrL~~~~~i-~~~~~  471 (553)
T 3aii_A          408 ADPVKLEVVGLPG---PVRVERPLHPDHPEIGNRVLELRGEVYLPGDDLG-----------E-GPLRLIDAVNV-IYSGG  471 (553)
T ss_dssp             ESEEEEEEETCCS---CEEEEEESCTTCGGGCEEEEEESSEEEEECTTCC-----------S-EEEEETTTEEE-EEETT
T ss_pred             cCcEEEEEeCCCC---ceEEEecCCCCCCcCccEEEEECCEEEEEcccCC-----------c-CceeecCEEEE-EEEEE
Confidence            9999999999983   2789999999999999999999999999999997           4 68999999875 34432


Q ss_pred             eecCCCCEEEEEEEEcCCC--CCCCCc-eEEEeccCC--ceeEEEEcccccCCCCCCCCCCCCCCccccCCCCceeEEEE
Q psy17575        708 NTKCNGAITSIDVKATPVD--VDNKPK-AFIHWVARP--ISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIG  782 (832)
Q Consensus       708 ~~~~~g~v~e~~~~~~~~~--~~~k~k-~~I~Wv~~~--~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~iN~~S~~~~~~  782 (832)
                      .           |+|++.+  +.+|+| ++|||||++  ++++||.         |+       +         . ++.+
T Consensus       472 ~-----------~~~~~~~~~~~~k~k~~~i~Wv~~~~~~~~~~~~---------~~-------~---------~-~~~~  514 (553)
T 3aii_A          472 E-----------LRYHSEGIEEARELGASMIHWVPAESALEAEVIM---------PD-------A---------S-RVRG  514 (553)
T ss_dssp             E-----------EEEEECSHHHHHHHTCEEECCEEGGGCEEEEEEC---------TT-------S---------C-EEEE
T ss_pred             E-----------EEEeCCchhhcccCCCCEEEEccCCCceEEEEEC---------CC-------C---------c-EEEE
Confidence            1           5665543  456777 799999975  6777772         31       1         1 5679


Q ss_pred             EeecCccCCCCCCeEEeEEeeeEEEecCC
Q psy17575        783 YADSGFVGVKPYDRFQFERVGFFTVDRDS  811 (832)
Q Consensus       783 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~  811 (832)
                      ++|+++.++++|++|||||.||||||+++
T Consensus       515 ~~e~~~~~~~~~~~~QfeR~Gyf~~D~~~  543 (553)
T 3aii_A          515 VIEADASELEVDDVVQLERFGFARLDSAG  543 (553)
T ss_dssp             EECGGGGGCCTTCEEEETTTEEEEEEECS
T ss_pred             EEchhHhcCCCCCEEEEEEeEEEEEeeCC
Confidence            99999999999999999999999999874

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}

Probab=100.00  E-value=6.6e-74  Score=657.31  Aligned_cols=293  Identities=25%  Similarity=0.340  Sum_probs=256.5

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------c
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------I  388 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~  388 (832)
                      ..||||||||||||||||||||||+||+|||++||+|+||||||||+|++++|+++|+++|+||||.||+         +
T Consensus        23 ~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~p  102 (512)
T 4gri_A           23 LSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFDEGPVVGGDYAP  102 (512)
T ss_dssp             -CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred             CceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence            4699999999999999999999999999999999999999999999999999999999999999999985         4


Q ss_pred             cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceE
Q psy17575        389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATL  458 (832)
Q Consensus       389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~l  458 (832)
                      ++||+|++.|+++|++|+++|+||+|+||++|+++.+          ...+.||+.+.++       +..+....+++++
T Consensus       103 y~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~-------~~~~~~~~~~~~~  175 (512)
T 4gri_A          103 YVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEE-------VENALIKKIKPVV  175 (512)
T ss_dssp             CBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHH-------HHHHHHTTCCCEE
T ss_pred             ccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhh-------hhhhhhhhcccee
Confidence            6999999999999999999999999999999997542          1245677766543       3333444567999


Q ss_pred             EEEecccCC--CCCceEEEeeeCCCCCCCCceeE----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCC
Q psy17575        459 RMKITLEEG--KQDPVAYRIKFLPHHRTGDSWCI----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI  532 (832)
Q Consensus       459 R~K~~~~~~--~~D~V~~Ri~~~~h~r~gd~~~i----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~  532 (832)
                      |+|+++...  +.|+|.||+.+.++...+|.+++    +|||||||||||++|||||||||+||++|||+|+||+++|||
T Consensus       176 R~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~  255 (512)
T 4gri_A          176 RFKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKW  255 (512)
T ss_dssp             EECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTC
T ss_pred             eecccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcCC
Confidence            999998642  47999999999877666655554    999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH
Q psy17575        533 YCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP  606 (832)
Q Consensus       533 ~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~  606 (832)
                      ..|   .|+|+|+    +|+|||||+++                .+|..+|+.||.|+||.||++.||||..+  +.|+.
T Consensus       256 ~~P---~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~  316 (512)
T 4gri_A          256 KPP---IYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSK  316 (512)
T ss_dssp             CCC---EEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCH
T ss_pred             CCC---eEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhH
Confidence            999   6999987    48999999853                26999999999999999999999999764  57886


Q ss_pred             -HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        607 -NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       607 -~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                       ++++.|..+.+++++    +++|+.||.|.|...
T Consensus       317 ~eli~~Fdl~~v~ks~----a~fD~~KL~~~N~~~  347 (512)
T 4gri_A          317 NDLEQFFSIEKINKSP----AIFDYHKLDFFNSYY  347 (512)
T ss_dssp             HHHHHHCCGGGBCSSC----CBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCC----ccccHHHHHHHHHHH
Confidence             566778888887777    789999999999654

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A

Probab=100.00  E-value=9.5e-72  Score=634.99  Aligned_cols=291  Identities=22%  Similarity=0.337  Sum_probs=258.3

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------  387 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------  387 (832)
                      +++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+||||.||+         
T Consensus         4 ~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~   83 (498)
T 2ja2_A            4 TETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYG   83 (498)
T ss_dssp             CCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTC
T ss_pred             CCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999997         


Q ss_pred             ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC---------CCCCCCCCCChhHhHHHHHHHHcCcccCC-Cce
Q psy17575        388 ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN---------PLPSPWRERPVEENVKLFEAMKNGLIDEG-EAT  457 (832)
Q Consensus       388 ~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~---------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~  457 (832)
                      +++||+|++.|+++|++|+++|+||+|+||++||++.+         .++++||+++.+|+.+.        ..+| .++
T Consensus        84 ~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~--------~~~g~~~~  155 (498)
T 2ja2_A           84 PYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAY--------LAEGRQPV  155 (498)
T ss_dssp             CCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHH--------HHTTCCCE
T ss_pred             CeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhh--------hccCCCce
Confidence            89999999999999999999999999999999997542         25688999999887542        2344 479


Q ss_pred             EEEEecccC-CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhc-
Q psy17575        458 LRMKITLEE-GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNAL-  530 (832)
Q Consensus       458 lR~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL-  530 (832)
                      ||||+|... .+.|.|.|++.+.++.  .+||+|     +|||||||||||++|||||||||.||++++++|.||+++| 
T Consensus       156 iR~k~~~~~~~~~D~v~G~i~~~~~~--~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~  233 (498)
T 2ja2_A          156 VRLRMPDDDLAWNDLVRGPVTFAAGS--VPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALI  233 (498)
T ss_dssp             EEECCCSSCEEEEETTTEEEEECTTC--SCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHH
T ss_pred             EEEECCCCceEEEecccceEeecccc--cCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHH
Confidence            999998211 2479999999988763  468986     9999999999999999999999999999999999999999 


Q ss_pred             ----CCCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-
Q psy17575        531 ----DIYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-  601 (832)
Q Consensus       531 ----~~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-  601 (832)
                          |+..|   +|+|+|+    +|+|||||+++                .+|.+||++||+|+||+|||+.|||+..+ 
T Consensus       234 ~~g~g~~~P---~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~  294 (498)
T 2ja2_A          234 RIGVAERIP---KFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD  294 (498)
T ss_dssp             HTTSCCCCC---EEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred             hhcCCCCCC---eEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence                99988   7999765    68999999964                27999999999999999999999999754 


Q ss_pred             -cccCH-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        602 -AVVSP-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       602 -~~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                       +.+++ ++++.|..+.+++.+    +++||.||.|.|...
T Consensus       295 ~e~~s~~eli~~f~~~~~~~~~----a~fd~~kL~~~N~~~  331 (498)
T 2ja2_A          295 HDLFGLDEMVAAFDVADVNSSP----ARFDQKKADALNAEH  331 (498)
T ss_dssp             CCCCCHHHHHHHCCGGGCCCSC----EECCHHHHHHHHHHH
T ss_pred             cccCCHHHHHhhCChhhcCccc----cccCHHHHHHhhHHH
Confidence             56675 667788877777666    999999999999654

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=100.00  E-value=1.3e-71  Score=630.83  Aligned_cols=290  Identities=22%  Similarity=0.322  Sum_probs=256.0

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCcc---------c
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQI---------T  389 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~~---------~  389 (832)
                      +|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+.         +
T Consensus         1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~   80 (468)
T 1j09_A            1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY   80 (468)
T ss_dssp             CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred             CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence            4899999999999999999999999999999999999999999999999999999999999999999964         8


Q ss_pred             ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEeccc
Q psy17575        390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLE  465 (832)
Q Consensus       390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~  465 (832)
                      +||+|++.|+++|++|+++|+||+|+||++|+++.+    .++++||+++.+|++.   .|.+|+    +++||||+|..
T Consensus        81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~~  153 (468)
T 1j09_A           81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPRP  153 (468)
T ss_dssp             BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCSS
T ss_pred             eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCCC
Confidence            999999999999999999999999999999998643    5788999999988754   355443    58999999864


Q ss_pred             C--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcc
Q psy17575        466 E--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQW  538 (832)
Q Consensus       466 ~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~  538 (832)
                      .  .+.|.|.|++.+.+.  ..+||+|     +|||||||||||++|||||||||.||++++++|.||+++||+..|   
T Consensus       154 ~~~~~~D~~~G~~~~~~~--~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p---  228 (468)
T 1j09_A          154 GTTEVKDELRGVVVYDNQ--EIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAP---  228 (468)
T ss_dssp             CEEEEEETTTEEEEEEGG--GSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCC---
T ss_pred             CceEEEeccceeEeeccc--CCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCC---
Confidence            2  246888888776543  2356776     999999999999999999999999999999999999999999988   


Q ss_pred             cccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHH
Q psy17575        539 EYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEA  611 (832)
Q Consensus       539 ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~  611 (832)
                      +|+|+|+    +|+|||||+++                .+|.++|++||+|+||+|||+.+||+..+  ..+++ ++++.
T Consensus       229 ~~~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~  292 (468)
T 1j09_A          229 RFYHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQA  292 (468)
T ss_dssp             EEEEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHH
T ss_pred             eEEEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhh
Confidence            6899765    68999999964                26999999999999999999999999754  56776 67788


Q ss_pred             HHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        612 VVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       612 ~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      |..+.+++.+    +++||.||.|.|..+
T Consensus       293 f~~~~~~~~~----~~~d~~kl~~~N~~~  317 (468)
T 1j09_A          293 FTWERVSLGG----PVFDLEKLRWMNGKY  317 (468)
T ss_dssp             CCGGGCCCSC----CBCCHHHHHHHHHHH
T ss_pred             CChhhcCccc----cccChHHhhhhcHHH
Confidence            8888777655    899999999999765

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=100.00  E-value=2.2e-70  Score=621.34  Aligned_cols=290  Identities=23%  Similarity=0.364  Sum_probs=245.0

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYF  395 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~  395 (832)
                      .++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|++.|+++|+|||+.||+ +++||+|+
T Consensus        23 ~~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~  102 (490)
T 4g6z_A           23 TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRM  102 (490)
T ss_dssp             -CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCH
T ss_pred             CCCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999996 69999999


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCC-CceEEEEecc
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEG-EATLRMKITL  464 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g-~~~lR~K~~~  464 (832)
                      +.|++++++|+++|+||+||||++||++.+          .++++||+++.++         .....+| ++++|||++.
T Consensus       103 ~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~---------~~~~~~g~~~~~R~k~~~  173 (490)
T 4g6z_A          103 DRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKV---------LPEPPAGVAPVLRFRNPL  173 (490)
T ss_dssp             HHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCC---------CCCCCTTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhh---------hhhhhcCCCceEEEecCC
Confidence            999999999999999999999999998643          1467899887432         1122344 4899999974


Q ss_pred             cC--CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCc
Q psy17575        465 EE--GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQ  537 (832)
Q Consensus       465 ~~--~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~  537 (832)
                      ..  .+.|.|.+.+.+.+.  ..+||+|     +|||||||||||++|||||||||+||+++||+|+||+++|||..|  
T Consensus       174 ~~~~~~~D~i~G~~~~~~~--~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P--  249 (490)
T 4g6z_A          174 TGTVAWDDAVKGRVEISNE--ELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVP--  249 (490)
T ss_dssp             SSEEEEEETTTEEEEEEGG--GCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCC--
T ss_pred             CCcEEEEEeeeeeeeeccc--cCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCC--
Confidence            32  235677777665432  3356665     999999999999999999999999999999999999999999999  


Q ss_pred             ccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH-HHHHH
Q psy17575        538 WEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP-NMLEA  611 (832)
Q Consensus       538 ~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~-~~le~  611 (832)
                       .|+|+|+    +|+|||||+++                .||.+||++||+|+||+|||+.|||+..+ +.++. +++++
T Consensus       250 -~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~  312 (490)
T 4g6z_A          250 -VYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEW  312 (490)
T ss_dssp             -EEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHH
T ss_pred             -eEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhh
Confidence             6999987    68999999842                38999999999999999999999999765 46676 78899


Q ss_pred             HHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        612 VVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       612 ~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      |+.+.|++++    +++|+.||.|.|...
T Consensus       313 F~~~~~~~~~----~~fd~~KL~~~N~~~  337 (490)
T 4g6z_A          313 FDLEHLGKSP----AQYDHNKLNWLNNHY  337 (490)
T ss_dssp             CCGGGBCSSC----EECCHHHHHHHHHHH
T ss_pred             CCHhhCCCCC----CccCHHHHHHHHHHH
Confidence            9999988888    789999999999664

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=100.00  E-value=8.5e-69  Score=611.13  Aligned_cols=285  Identities=24%  Similarity=0.311  Sum_probs=245.3

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYFHQ  397 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~~~  397 (832)
                      +|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|++.
T Consensus         1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~   80 (492)
T 2cfo_A            1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL   80 (492)
T ss_dssp             CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred             CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence            489999999999999999999999999999999999999999999999999999999999999999996 8999999999


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-  466 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-  466 (832)
                      |++++++|+++|+||+||||++||++.+          .++++||+++.+|++   ++|.+|.    ++++|+|++... 
T Consensus        81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~~~  153 (492)
T 2cfo_A           81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDDRQ  153 (492)
T ss_dssp             HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTTCE
T ss_pred             HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCCCc
Confidence            9999999999999999999999997632          256789999988765   3555553    589999997521 


Q ss_pred             ----------------CC-CCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHh
Q psy17575        467 ----------------GK-QDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNA  529 (832)
Q Consensus       467 ----------------~~-~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~a  529 (832)
                                      .. .|+|++|...  +|     |+++||||||||||||+|||||||||+||++|+++|.||+++
T Consensus       154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~--~p-----~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a  226 (492)
T 2cfo_A          154 IEWQDLVRGRVSWQGADLGGDMVIARAAP--RG-----EIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA  226 (492)
T ss_dssp             EEEEETTTEEEEEEGGGGCSSEEEECSCC--TT-----SCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred             eEEEecceeeeeecccccCCCeEEEEecC--CC-----CCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence                            13 5777776422  11     335999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC--C-Cc
Q psy17575        530 LDIYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG--A-QA  602 (832)
Q Consensus       530 L~~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~--~-~~  602 (832)
                      ||+..|   .|+|+|+    +|+|||||+++                .+|.+||++||+|+||+|||+.+||+.  . .+
T Consensus       227 lg~~~P---~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e  287 (492)
T 2cfo_A          227 LGATPP---NFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGE  287 (492)
T ss_dssp             TTCCCC---EEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCS
T ss_pred             cCCCCc---eEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCcccc
Confidence            999998   6899665    69999999953                269999999999999999999999996  2 35


Q ss_pred             ccCH-HHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        603 VVSP-NMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       603 ~~~~-~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      .++. ++++.|..+.++    +.++++||.||.|.|...
T Consensus       288 ~~~~~e~i~~f~~~~i~----~~~~~~d~~kl~~~N~~~  322 (492)
T 2cfo_A          288 LFTLDLAAKHFSFERIN----KAGARFDWDKLNWLNRQY  322 (492)
T ss_dssp             CCCHHHHHHHCCSTTBC----SSCEECCHHHHHHHHHHH
T ss_pred             ccCHHHHHhhcChhhcC----ccccccCHHHHHHHHHHH
Confidence            6675 555666666554    455999999999999654

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=100.00  E-value=1.8e-68  Score=607.50  Aligned_cols=285  Identities=22%  Similarity=0.318  Sum_probs=241.9

Q ss_pred             cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc--------
Q psy17575        316 TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ--------  387 (832)
Q Consensus       316 ~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~--------  387 (832)
                      +.++|||||||||||+|||||+||||+||++||++||+|+|||||||++|+.+++++.|+++|+|||+.||+        
T Consensus        22 ~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~~  101 (488)
T 3afh_A           22 CFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDF  101 (488)
T ss_dssp             ---CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCTT
T ss_pred             cCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence            345699999999999999999999999999999999999999999999999999999999999999999997        


Q ss_pred             -ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC
Q psy17575        388 -ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE  466 (832)
Q Consensus       388 -~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~  466 (832)
                       +++||+|++.|++++++|+++|+||+|+||++||++...+.++.+    .      +.+.+|+    ++++|||++ ..
T Consensus       102 gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~----~------~~~~~G~----~~~iR~k~~-~~  166 (488)
T 3afh_A          102 GPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP----H------EYKEKGH----PVTIKFKVL-PG  166 (488)
T ss_dssp             CCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC----H------HHHHTTC----CEEEEECCC-SS
T ss_pred             CCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch----h------hHHhcCC----CceEEEECC-CC
Confidence             489999999999999999999999999999999987522212222    1      2233332    579999998 32


Q ss_pred             --CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccc
Q psy17575        467 --GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE  539 (832)
Q Consensus       467 --~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~e  539 (832)
                        .+.|.|.|++.+.++  ..+||+|     +|||||||||||++|||||||||.||++++|+|.||+++||+..|   +
T Consensus       167 ~~~~~D~v~G~~~~~~~--~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P---~  241 (488)
T 3afh_A          167 KTSFEDLLKGYMEFDNS--TLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP---V  241 (488)
T ss_dssp             EEEEEETTTEEEEEEGG--GSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC---E
T ss_pred             ceeEEeccceeEeecCC--CCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCC---e
Confidence              247999999987664  3467886     999999999999999999999999999999999999999999999   6


Q ss_pred             ccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCHH-HHHHHH
Q psy17575        540 YGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSPN-MLEAVV  613 (832)
Q Consensus       540 f~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~~-~le~~~  613 (832)
                      |+|+|+    +|+|||||+++                .+|.++|++||+|+||+|||+.+||+..+ +.++++ +++.|+
T Consensus       242 f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~i~~f~  305 (488)
T 3afh_A          242 FMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFD  305 (488)
T ss_dssp             EEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHHGGGCC
T ss_pred             EEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCC
Confidence            999865    68999999953                26999999999999999999999999755 556653 344454


Q ss_pred             HHhhccCCCceeEEecCcceEEeecCC
Q psy17575        614 REVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       614 r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      .+.    .+|.++++||.||.|.|..+
T Consensus       306 ~~~----i~~~~~~fd~~kl~~~N~~~  328 (488)
T 3afh_A          306 PKD----ISNKGVIFDYQKLEWVNGKH  328 (488)
T ss_dssp             GGG----SCSSCEECCHHHHHHHHHHH
T ss_pred             hhh----cCccccccChHHhhhccHHH
Confidence            444    45667999999999999654

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=100.00  E-value=1.1e-65  Score=596.23  Aligned_cols=284  Identities=22%  Similarity=0.329  Sum_probs=243.8

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------c
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------I  388 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~  388 (832)
                      ++|+|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.+++++.|+++|+|||+.||+         +
T Consensus       128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp  207 (592)
T 3al0_C          128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP  207 (592)
T ss_dssp             CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence            4699999999999999999999999999999999999999999999999999999999999999999997         4


Q ss_pred             cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-C
Q psy17575        389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-G  467 (832)
Q Consensus       389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~  467 (832)
                      ++||+|++.|++++.+|+++|+||+|+||++||++...+.  |..+  .      +.+..|+    ++++|||++... .
T Consensus       208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~--Y~~~--~------~~~~~g~----~~~iR~k~~~~~~~  273 (592)
T 3al0_C          208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTT--YEYP--H------EYKEKGH----PVTIKFKVLPGKTS  273 (592)
T ss_dssp             CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCC--SSCC--H------HHHHTTC----CEEEEECCCSSCCE
T ss_pred             eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCC--CCcH--H------HHhhcCC----CceEEEECCCCCce
Confidence            8999999999999999999999999999999999863322  2222  1      2233332    579999998211 2


Q ss_pred             CCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccc
Q psy17575        468 KQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGR  542 (832)
Q Consensus       468 ~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~h  542 (832)
                      +.|.|.|++.+.++  +.+||+|     +|||||||||||++|||||||||.||++++++|.||+++||++.|   +|+|
T Consensus       274 ~~D~v~G~~~~~~~--~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P---~~~h  348 (592)
T 3al0_C          274 FEDLLKGYMEFDNS--TLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP---VFMH  348 (592)
T ss_dssp             ECCTTTCSEECCSS--SSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCC---BCCE
T ss_pred             eeecccceeeeccc--cCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCC---eEEE
Confidence            47999999887654  3468888     999999999999999999999999999999999999999999999   6999


Q ss_pred             cCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC-cccCH-HHHHHHHHHh
Q psy17575        543 LNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ-AVVSP-NMLEAVVREV  616 (832)
Q Consensus       543 L~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~-~~~~~-~~le~~~r~~  616 (832)
                      +|+    +|+|||||+++                .+|.+||++||+|+||+|||+.+||+..+ ..+++ +++++|+.+.
T Consensus       349 lpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~e~~s~~e~i~~f~~~~  412 (592)
T 3al0_C          349 IPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKD  412 (592)
T ss_dssp             ECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCCTTS
T ss_pred             eeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHHHhhCChhh
Confidence            865    68999999953                26999999999999999999999999754 45554 3456666555


Q ss_pred             hccCCCceeEEecCcceEEeecCC
Q psy17575        617 LNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       617 l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      +    +|.++++||.||.|.|..+
T Consensus       413 i----~~~~~~fd~~kl~~~N~~~  432 (592)
T 3al0_C          413 I----SNKGVIFDYQKLEWVNGKH  432 (592)
T ss_dssp             B----CSSCCBCCHHHHHHHHHHH
T ss_pred             c----CcccceeCHHHHhhhhHHH
Confidence            5    4556999999999999654

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=100.00  E-value=7.7e-63  Score=561.34  Aligned_cols=291  Identities=24%  Similarity=0.357  Sum_probs=247.0

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------cc
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------IT  389 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~~  389 (832)
                      -||+||||||||+|||||+|+|++||++||.+||+|+|||||||++|+.++++++|+++|+|||+.||+         ++
T Consensus        13 vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y   92 (481)
T 2o5r_A           13 MVRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPY   92 (481)
T ss_dssp             CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCC
T ss_pred             EEEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCce
Confidence            489999999999999999999999999999999999999999999999999999999999999999996         48


Q ss_pred             ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----------CCCCC--CCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----------PLPSP--WRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----------~~~~~--~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      +||+|++.|+++|++|+++|+||+|+||+++++..+          .+++.  ||+++.+|+.+   .|.+|.    +++
T Consensus        93 ~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~  165 (481)
T 2o5r_A           93 RQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPA  165 (481)
T ss_dssp             BGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCE
T ss_pred             eeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cce
Confidence            999999999999999999999999999999987532          23445  99999887653   455553    589


Q ss_pred             EEEEecccC-CCCCceEEEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575        458 LRMKITLEE-GKQDPVAYRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD  531 (832)
Q Consensus       458 lR~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~  531 (832)
                      ||+|++... .+.|.+.|++.+.+.  .-+||+|     +|||||||||||++|||||||||.||.+++++|.||+++||
T Consensus       166 iR~k~~~~~~~~~D~~~G~~~~~~~--~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG  243 (481)
T 2o5r_A          166 VFFKMPRKDYVLNDVVKGEVVFKTG--AIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE  243 (481)
T ss_dssp             EEECCCSSCEEEEETTTEEEEECTT--SSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCceEEEecccceeEeccc--cCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC
Confidence            999998621 235777777776543  3357776     99999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCC--CcccC
Q psy17575        532 IYCPVQWEYGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGA--QAVVS  605 (832)
Q Consensus       532 ~~~P~~~ef~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~--~~~~~  605 (832)
                      +..|   .|+|+|+    +|+|||||+++                .+|..+|++||+|+||+||++.+||+..  ...++
T Consensus       244 ~~~p---~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~  304 (481)
T 2o5r_A          244 KAPP---VFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHPEGKELLT  304 (481)
T ss_dssp             CCCC---EEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCC
T ss_pred             CCCC---eEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCC
Confidence            9988   5999764    68999999963                2699999999999999999999999973  34556


Q ss_pred             HHHHHHHHHHhhccCCCceeEEecCcceEEeecCC
Q psy17575        606 PNMLEAVVREVLNDTAPRVMVVIDPLPLHIVNFDQ  640 (832)
Q Consensus       606 ~~~le~~~r~~l~~~a~R~~av~dp~kl~i~N~~~  640 (832)
                      +   +.+++.+.-...++..+++||.|+.+.|...
T Consensus       305 ~---~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~  336 (481)
T 2o5r_A          305 L---EELISSFSLDRLSPNPAIFDPQKLKWMNGYY  336 (481)
T ss_dssp             H---HHHHHHCCGGGBCSSCEECCHHHHHHHHHHH
T ss_pred             H---HHHHHhCChhhCCccCcccChHHhhhhCHHH
Confidence            5   2334444444455666999999999999653

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=100.00  E-value=3.7e-60  Score=510.08  Aligned_cols=259  Identities=19%  Similarity=0.201  Sum_probs=199.1

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc-ccccchhH
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ-ITHSSDYF  395 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~-~~~qSd~~  395 (832)
                      .++|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|++.|++||+|||+.||+ +++||+|+
T Consensus         3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~   82 (298)
T 1nzj_A            3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH   82 (298)
T ss_dssp             -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred             CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999996 89999999


Q ss_pred             HHHHHHHHHHHHcCCccccCCCHHHHhccC-CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC-CCCCceE
Q psy17575        396 HQLYEWAVKLIKKGLAYVCHQKSDEMKGFN-PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE-GKQDPVA  473 (832)
Q Consensus       396 ~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~-~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~-~~~D~V~  473 (832)
                      +.|++++++|+++|+||+|+||++||++.. .+++.||+++.+           |    ..+++|+|++... .+.|.+.
T Consensus        83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~~f~D~~~  147 (298)
T 1nzj_A           83 DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHG-----------P----DNAAVRIRQQHPVTQFTDQLR  147 (298)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCC-----------S----TTCEEEECCSSCCCEEEETTT
T ss_pred             HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcC-----------C----CCCcEEEecCCcccceehhhC
Confidence            999999999999999999999999998753 356788876532           1    2479999987421 1234444


Q ss_pred             EEeeeCCCCCCCCceeE-----eeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccccccC----
Q psy17575        474 YRIKFLPHHRTGDSWCI-----YPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLN----  544 (832)
Q Consensus       474 ~Ri~~~~h~r~gd~~~i-----~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~----  544 (832)
                      +.+.+.+. ...+|++|     +|||||||+|||++|||||||||.||++++++|.+|+++||+..|.   |.|+|    
T Consensus       148 G~~~~~~~-~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~---~~H~pll~~  223 (298)
T 1nzj_A          148 GIIHADEK-LAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD---YIHLPLALN  223 (298)
T ss_dssp             EEEECCHH-HHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE---EEEECBCCC
T ss_pred             cccccCcc-cCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCe---EEEeeeeEC
Confidence            44433211 11123333     9999999999999999999999999999999999999999999995   56654    


Q ss_pred             CCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCHHH-HHHHHH
Q psy17575        545 VNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSPNM-LEAVVR  614 (832)
Q Consensus       545 l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~~~-le~~~r  614 (832)
                      .+|+|||||+++..|++.      +|+              +++.||++.+||+...  +.++.+. |++.+.
T Consensus       224 ~~g~KLSKR~g~~~v~~~------~~~--------------~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~~~  276 (298)
T 1nzj_A          224 PQGAKLSKQNHAPALPKG------DPR--------------PVLIAALQFLGQQAEAHWQDFSVEQILQSAVK  276 (298)
T ss_dssp             -------------CCCSS------CCH--------------HHHHHHHHHTTCCCCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcccccCCccChhcC------Ccc--------------HHHHHHHHHcCCCCCcccccCCHHHHHHHHHH
Confidence            468999999998766432      343              3478999999998765  4677643 334333

>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-56  Score=449.08  Aligned_cols=181  Identities=31%  Similarity=0.509  Sum_probs=175.4

Q ss_pred             HHHHHHHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccCCCccchHHHHHHHHhCCC
Q psy17575         62 ADSMISAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKSQSSIHLPLLVKYIVSKAL  141 (832)
Q Consensus        62 ~~~l~~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~l~~~I~~gkl  141 (832)
                      .++++++|++|||+|+||+||+||+++|++|..+|++|+. ..+||+++|+|||+|||++|++..+||++|++||++|+|
T Consensus         4 ~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~-~~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gkl   82 (187)
T 3tl4_X            4 VEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPS-DYQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDL   82 (187)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCT-TCCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccc-cCCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccC
Confidence            4789999999999999999999999999999999999997 577999999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh--hCCCC
Q psy17575        142 DSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT--LLKWA  219 (832)
Q Consensus       142 kt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~--~LkWA  219 (832)
                      +|++||+||++|+++++.++|.++||++|||||+||+|||+++|++||++|+++|+++||+ |+|+|||+||+  .||||
T Consensus        83 kt~~Qv~AAl~yl~~~~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkWA  161 (187)
T 3tl4_X           83 KTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKWA  161 (187)
T ss_dssp             CSHHHHHHHHHHHHHHGGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTTS
T ss_pred             CcHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCCC
Confidence            9999999999999988545999999999999999999999999999999999999999999 99999999999  99999


Q ss_pred             ChhhhHHHHHHHHHhhcCCCccccc
Q psy17575        220 DGKYIKSEVDVQVLNLLGPKTEADL  244 (832)
Q Consensus       220 d~k~vK~~vD~~~l~lLGPKte~d~  244 (832)
                      ||+.||++||+||+++||||||+|+
T Consensus       162 d~~~vK~~vD~~~l~lLGPKte~D~  186 (187)
T 3tl4_X          162 DPRSFKPIIDQEVLKLLGPKDERDL  186 (187)
T ss_dssp             CTTSHHHHHHHHHHHHHCSCCGGGC
T ss_pred             CHHHHHHHHHHHHHHHcCCcccccc
Confidence            9999999999999999999999985

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=99.92  E-value=1.4e-26  Score=266.30  Aligned_cols=274  Identities=13%  Similarity=0.089  Sum_probs=168.1

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHH-----HHhcCCEEEEeccCCCccccc--------H-----------------
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGY-----AAAHNGICFLRYDDTNPEKEE--------E-----------------  368 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~-----Ar~~gG~~iLRiDDTDp~r~~--------~-----------------  368 (832)
                      .++..-||||||++||||+|+|++|+.+     ++.++|+|++||||||+.|..        +                 
T Consensus        21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~  100 (523)
T 1irx_A           21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH  100 (523)
T ss_dssp             EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred             eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence            4555559999999999999999999666     577899999999999965544        3                 


Q ss_pred             -----HHHHHHHHHHHHcCCCcCcccccch-hHH-HHHHHHHHHHHcC-CccccCCCHHHHh---c----cC---CCCCC
Q psy17575        369 -----KFFTGIKDMVQWLGYKPYQITHSSD-YFH-QLYEWAVKLIKKG-LAYVCHQKSDEMK---G----FN---PLPSP  430 (832)
Q Consensus       369 -----e~~~~I~edL~WLGl~pd~~~~qSd-~~~-~~ye~A~~Li~~G-~AY~C~Cs~eel~---~----~~---~~~~~  430 (832)
                           .+.+.|+++|+|||+.||.. +||+ |.+ .|.+++.+|+++| .+|.|.+....+.   .    +-   .....
T Consensus       101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~  179 (523)
T 1irx_A          101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE  179 (523)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence                 39999999999999998876 8999 888 8889999999999 7776553322210   0    00   01112


Q ss_pred             CCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC-CCCce--EEEeeeCCCCCCCCceeEeeccceeeeeecCCCCc
Q psy17575        431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG-KQDPV--AYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHI  507 (832)
Q Consensus       431 ~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~-~~D~V--~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gI  507 (832)
                      |+..+ ++ .         .... ..++|++...... ..|++  .+|+.+  |.    +| .+|+|+|+++||  .||+
T Consensus       180 ~~~~~-~~-~---------~~~~-~~~~~f~~~~g~~~~~d~~~G~g~~~w--~~----d~-~~~~~~l~~~vd--~~G~  238 (523)
T 1irx_A          180 HRREA-EI-I---------EWDG-GWKVKYKCPEGHEGWVDIRSGNVKLRW--RV----DW-PMRWSHFGVDFE--PAGK  238 (523)
T ss_dssp             TCCEE-CE-E---------EECS-SSCEEECCSSSCCCEECTTSSCEEECH--HH----HH-HHHHHHSCCCBC--CEEH
T ss_pred             hCCcc-cc-c---------ccCC-CCceeeeecCCCccccCCcCCCCCCCC--Cc----ch-HhhHHHcCCCCc--CCCc
Confidence            33211 11 0         0111 1346666632111 12444  233221  10    22 478999988776  7888


Q ss_pred             ceeeec--ccccccchhHHHHHHhcCCCCCCcccccccCCC--CcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCC
Q psy17575        508 THSLCT--KEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVN--YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGF  583 (832)
Q Consensus       508 THvlRg--~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~--gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~  583 (832)
                      +|+.+|  .||.    .++.+ .+||+..|...+++++...  |.|||||+++.               .++..+++. |
T Consensus       239 Dh~~~h~s~~~~----~~i~~-~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~---------------i~~~~~~~~-~  297 (523)
T 1irx_A          239 DHLVAGSSYDTG----KEIIK-EVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNV---------------ILLSDLYEV-L  297 (523)
T ss_dssp             HHHSTTSHHHHH----HHHHH-HHHCCCCCBCCEECCEEESCC---------CC---------------CCHHHHHTT-S
T ss_pred             CccCCCcchhhH----HHHHH-HHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCC---------------CCHHHHHHH-c
Confidence            888876  4443    22222 7899988854444444445  88999999631               378899988 9


Q ss_pred             CHHHHHHHHHHhCCCCCCcccCHH-HHHHHHHHhhccCCCceeEEecCc--ceEEeec
Q psy17575        584 PPEAINKFCARMGVTGAQAVVSPN-MLEAVVREVLNDTAPRVMVVIDPL--PLHIVNF  638 (832)
Q Consensus       584 ~PeAI~nfl~~lG~s~~~~~~~~~-~le~~~r~~l~~~a~R~~av~dp~--kl~i~N~  638 (832)
                      .|+||++|++..|+. ++..++++ .|....+.+ +.. .+..+.+++.  |+.|.|.
T Consensus       298 ~pdalR~~l~~~~~~-~~~~fs~~~~l~~~~~~~-~~~-~~~~~~~~~~~~~l~~~n~  352 (523)
T 1irx_A          298 EPGLVRFIYARHRPN-KEIKIDLGLGILNLYDEF-EKV-ERIYFGVEGGKGDDEELRR  352 (523)
T ss_dssp             CHHHHHHHHHSSCTT-SCEEECCSTTHHHHHHHH-HHH-HHHHTTSCC-----CHHHH
T ss_pred             CHHHHHHHHHhcCCC-CCceeCcchhHHHHHHHH-HHH-HHHHhcccccchhhhhhcc
Confidence            999999999988874 46677777 555443322 111 1122334444  4777773

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=99.79  E-value=5.6e-19  Score=200.52  Aligned_cols=253  Identities=14%  Similarity=0.132  Sum_probs=174.5

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccc---c----------cHHHHHHHHHHHHHcCCCc-
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEK---E----------EEKFFTGIKDMVQWLGYKP-  385 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r---~----------~~e~~~~I~edL~WLGl~p-  385 (832)
                      +|+|+|++||||+|++++...+||.     ++..|+.+|+|+|.+-   .          ...|.+.+.++++|||+.+ 
T Consensus        29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~  108 (461)
T 1li5_A           29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP  108 (461)
T ss_dssp             CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            6888899999999999999998884     5679999999999752   1          3578999999999999996 


Q ss_pred             CcccccchhHHHHHHHHHHHHHcCCcccc------CCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEE
Q psy17575        386 YQITHSSDYFHQLYEWAVKLIKKGLAYVC------HQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR  459 (832)
Q Consensus       386 d~~~~qSd~~~~~ye~A~~Li~~G~AY~C------~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR  459 (832)
                      +..+.+|+|.+.+.+..++|+++|+||.+      ||..+. .   .+...|. +++       ++|..|.        |
T Consensus       109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~-~---~yg~lsg-~~~-------~~l~~g~--------r  168 (461)
T 1li5_A          109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD-P---TYGVLSR-QDL-------DQLQAGA--------R  168 (461)
T ss_dssp             SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC-T---TTTTTTT-C-------------------------
T ss_pred             cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccc-c---ccccccC-CCH-------HHhhcCC--------c
Confidence            66678999999999999999999999997      676541 1   1111121 111       2333332        2


Q ss_pred             EEecccC-CCCCceEEEeeeCCCCCCCCce-eEeeccceeeee-ecCCCCcceeee--ccccc-ccchhHHHHHHhc-CC
Q psy17575        460 MKITLEE-GKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL-CDSIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI  532 (832)
Q Consensus       460 ~K~~~~~-~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V-dD~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~  532 (832)
                      +..+... ...|+++++.....++.-...| ..+|.||.+|++ .+...|.++.|+  |.|++ .+.........++ |.
T Consensus       169 v~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~  248 (461)
T 1li5_A          169 VDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDG  248 (461)
T ss_dssp             ------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSS
T ss_pred             ccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCC
Confidence            2221111 2369999986433333222345 358999998865 344558899999  99976 3333333334444 77


Q ss_pred             CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575        533 YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA  611 (832)
Q Consensus       533 ~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~  611 (832)
                      +.|.+|- .+++.++|.|||||.++               ..++..+.++ |.|++|+-|++. +-..++..|+++.|..
T Consensus       249 ~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~-~~~~~~~~fs~~~l~~  311 (461)
T 1li5_A          249 QYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMS-GHYRSQLNYSEENLKQ  311 (461)
T ss_dssp             CCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHS-SCTTSCEEECHHHHHH
T ss_pred             CCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHc-CCcCCCCCCCHHHHHH
Confidence            6565554 47788899999999963               1367777775 999999999997 5467788999988877


Q ss_pred             HHH
Q psy17575        612 VVR  614 (832)
Q Consensus       612 ~~r  614 (832)
                      +.+
T Consensus       312 ~~~  314 (461)
T 1li5_A          312 ARA  314 (461)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=99.73  E-value=7.3e-18  Score=192.38  Aligned_cols=266  Identities=15%  Similarity=0.088  Sum_probs=169.6

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQW  380 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~W  380 (832)
                      -+++.-+|.|||+|||||+|++++...+||.  ..|..++++.++|                |..-..++.+.|.++++|
T Consensus         7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~   86 (497)
T 2csx_A            7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF   86 (497)
T ss_dssp             EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            3788999999999999999999999999995  5999999999999                666677899999999999


Q ss_pred             cCCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHHHHhccC-C----CCCCCCCC-ChhHhHHHHHHHH
Q psy17575        381 LGYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSDEMKGFN-P----LPSPWRER-PVEENVKLFEAMK  447 (832)
Q Consensus       381 LGl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~eel~~~~-~----~~~~~R~r-~~ee~L~~f~~m~  447 (832)
                      ||+.+|..+.+|+  |.+.+.+...+|+++|++|.|     +|...+.--.. .    ..|+ |+. +++.       + 
T Consensus        87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~~-------~-  157 (497)
T 2csx_A           87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCP-IHQKKCEY-------I-  157 (497)
T ss_dssp             TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------------------------------
T ss_pred             hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCC-CCCCCCeE-------E-
Confidence            9999997777777  888888899999999999998     57654321100 0    0111 111 1110       0 


Q ss_pred             cCcccCCCceEEEEecc-----------------------------cCCCCCceEEEeeeC---CCCCCCC-ceeEee--
Q psy17575        448 NGLIDEGEATLRMKITL-----------------------------EEGKQDPVAYRIKFL---PHHRTGD-SWCIYP--  492 (832)
Q Consensus       448 ~g~~~~g~~~lR~K~~~-----------------------------~~~~~D~V~~Ri~~~---~h~r~gd-~~~i~P--  492 (832)
                            ....+.+|++.                             ..+..|+.+-|....   .+++-++ .|++|.  
T Consensus       158 ------~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~  231 (497)
T 2csx_A          158 ------KEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWF  231 (497)
T ss_dssp             ------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHH
T ss_pred             ------ecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEec
Confidence                  00122222110                             012356666662110   0111111 233220  


Q ss_pred             --ccceeeeeec---CCCCcceeeecccccccch-hHHHHHHhcCCCCCCc-ccccccCCCCcccchhHHHHhhhcCccC
Q psy17575        493 --TYDYTHCLCD---SIEHITHSLCTKEFQSRRS-SYYWLCNALDIYCPVQ-WEYGRLNVNYTVVSKRKIAKLIEENIVN  565 (832)
Q Consensus       493 --tY~fA~~VdD---~l~gITHvlRg~E~~~~~~-~~~~L~~aL~~~~P~~-~ef~hL~l~gtkLSKRk~~~lv~~g~v~  565 (832)
                        ...|+.++.|   ....+++.+.|.|++..+. ....+..++|+..|.. +..+++.++|.|||||+++      .  
T Consensus       232 ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN------~--  303 (497)
T 2csx_A          232 DALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGN------V--  303 (497)
T ss_dssp             HHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTC------C--
T ss_pred             ccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCC------C--
Confidence              0012333333   2336788899999976222 2223446778877763 3467777899999999964      1  


Q ss_pred             CCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575        566 DWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE  615 (832)
Q Consensus       566 gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~  615 (832)
                             .++..+.+ +|.++|++-|++..+-...+..|+++.+....+.
T Consensus       304 -------i~~~dli~-~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~  345 (497)
T 2csx_A          304 -------VDPYEVVQ-EYGLDEVRYFLLREVPFGQDGDFSKKAILNRING  345 (497)
T ss_dssp             -------CCHHHHHH-HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHH
T ss_pred             -------CCHHHHHH-HCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHH
Confidence                   24555555 5889999999999887788899999988776544

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=99.67  E-value=2.5e-16  Score=178.47  Aligned_cols=252  Identities=14%  Similarity=0.110  Sum_probs=171.3

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCCcC
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYKPY  386 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~pd  386 (832)
                      +|+|+|++||||+|++++...++|     .+...|+..+||.|.+-.             ...|.+.+.+++++||+.++
T Consensus        32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d  111 (462)
T 3tqo_A           32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP  111 (462)
T ss_dssp             CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            699999999999999998866665     366699999999997532             35889999999999999986


Q ss_pred             c-ccccchhHHHHHHHHHHHHHcCCcc------ccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEE
Q psy17575        387 Q-ITHSSDYFHQLYEWAVKLIKKGLAY------VCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLR  459 (832)
Q Consensus       387 ~-~~~qSd~~~~~ye~A~~Li~~G~AY------~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR  459 (832)
                      . .++.|+|.+.+.+.+++|+++|+||      ++||.+..    ..+..-. .++.+       +|..|.        |
T Consensus       112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~----~~yg~Ls-~~~~~-------~~~~g~--------r  171 (462)
T 3tqo_A          112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF----KDYGKLS-HRHLD-------ELQAGA--------R  171 (462)
T ss_dssp             SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC----TTTTTTT-TCSCC----------------------
T ss_pred             ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc----ccccccc-CCChH-------HhhccC--------c
Confidence            4 4588999999999999999999999      45665431    1111111 11111       222221        2


Q ss_pred             EEecc-cCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeeeec-CCCCcceeee--ccccc-ccchhHHHHHHhc-CC
Q psy17575        460 MKITL-EEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCLCD-SIEHITHSLC--TKEFQ-SRRSSYYWLCNAL-DI  532 (832)
Q Consensus       460 ~K~~~-~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~VdD-~l~gITHvlR--g~E~~-~~~~~~~~L~~aL-~~  532 (832)
                      ..++. .....|+++|+.....+|.=..-| .+.|.||+.|++-. ...|-+..|+  |.|++ ++....+....++ |.
T Consensus       172 ~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~  251 (462)
T 3tqo_A          172 VEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK  251 (462)
T ss_dssp             -----CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS
T ss_pred             cccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC
Confidence            22221 112369999996544443211223 46999999998833 3455555554  88887 5666666666665 55


Q ss_pred             CCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575        533 YCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA  611 (832)
Q Consensus       533 ~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~  611 (832)
                      +.+.+|- -+++.++|.|||||.++               ..|+..+.+. |.|++|+-|++... .+++..|+++.|+.
T Consensus       252 p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~-yr~~l~fs~~~l~~  314 (462)
T 3tqo_A          252 PFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGH-YRNPLSYSKENLEN  314 (462)
T ss_dssp             CCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSC-TTSCEEECHHHHHH
T ss_pred             CcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCC-CCCCcCcCHHHHHH
Confidence            3344443 46678899999999864               2367777764 99999999998765 46677888888876


Q ss_pred             HH
Q psy17575        612 VV  613 (832)
Q Consensus       612 ~~  613 (832)
                      ..
T Consensus       315 a~  316 (462)
T 3tqo_A          315 GR  316 (462)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=99.67  E-value=3.3e-16  Score=175.50  Aligned_cols=265  Identities=13%  Similarity=0.074  Sum_probs=158.3

Q ss_pred             eeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCcccc-------------cHHHHHHHHHHHHHcCCC
Q psy17575        323 RFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEKE-------------EEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       323 RFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r~-------------~~e~~~~I~edL~WLGl~  384 (832)
                      -.+|+|+|++||||+|++++...+||-     ++..++..+||.|.+..             ...+.+.|.+++++||+.
T Consensus        44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~  123 (414)
T 3c8z_A           44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL  123 (414)
T ss_dssp             ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence            447999999999999999998887776     77899999999986532             357888999999999998


Q ss_pred             -cCcccccchhHHHHHHHHHHHHHcCCccccCCCHH-----HHhccCCCCCCCCCCChhHhHHHHHHHHcCccc-CCCce
Q psy17575        385 -PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSD-----EMKGFNPLPSPWRERPVEENVKLFEAMKNGLID-EGEAT  457 (832)
Q Consensus       385 -pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~e-----el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~-~g~~~  457 (832)
                       +|.....|+|.+.+.+...+|+++|.+|.+.|+.+     ++.++... +....+..+       +|..+..+ .+...
T Consensus       124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~-g~l~~~~~~-------~~~~~~~~~~~~~~  195 (414)
T 3c8z_A          124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQF-GYESGYDRD-------TMLTLFAERGGDPD  195 (414)
T ss_dssp             CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTT-TTTTCCCHH-------HHHHHHHHTTCCTT
T ss_pred             CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhh-HhhcCCCHH-------HHHHHHhhcccccc
Confidence             77767778888888899999999999999876411     11222110 000011222       22221000 01110


Q ss_pred             EEEEecccCCCCCceEEEeeeCCCCCCCCce-eEeeccceeeee--ecCC-CCcceeeecccccc-cchhHHHHHHhc-C
Q psy17575        458 LRMKITLEEGKQDPVAYRIKFLPHHRTGDSW-CIYPTYDYTHCL--CDSI-EHITHSLCTKEFQS-RRSSYYWLCNAL-D  531 (832)
Q Consensus       458 lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~-~i~PtY~fA~~V--dD~l-~gITHvlRg~E~~~-~~~~~~~L~~aL-~  531 (832)
                          ........|++.|++....++.=...| .++|.||..|..  ..++ ..+.--+-|.|++. +......+..++ |
T Consensus       196 ----~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g  271 (414)
T 3c8z_A          196 ----RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTG  271 (414)
T ss_dssp             ----CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHC
T ss_pred             ----ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcC
Confidence                000112358888887543332100112 247888776532  1111 11222233666553 222223444455 6


Q ss_pred             CCCCC-cc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHH
Q psy17575        532 IYCPV-QW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNML  609 (832)
Q Consensus       532 ~~~P~-~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~l  609 (832)
                      ..+|. .| +++++.++|.|||||+++               ..++..+.++||.|++++-|++. +-..++..|+++.|
T Consensus       272 ~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l  335 (414)
T 3c8z_A          272 ERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVL  335 (414)
T ss_dssp             CSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHH
T ss_pred             CCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHH
Confidence            64433 33 347889999999999974               24789999999999999999998 66677889999988


Q ss_pred             HHHHHH
Q psy17575        610 EAVVRE  615 (832)
Q Consensus       610 e~~~r~  615 (832)
                      ....+.
T Consensus       336 ~~~~~~  341 (414)
T 3c8z_A          336 DEANAR  341 (414)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876553

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.8e-16  Score=174.15  Aligned_cols=192  Identities=9%  Similarity=0.019  Sum_probs=129.7

Q ss_pred             cHHHHHHhhhhcCC--ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCcccccHH--------H
Q psy17575        305 THDLLREHIKYTGG--KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNPEKEEEK--------F  370 (832)
Q Consensus       305 ~~~~~~~hl~~~~~--~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp~r~~~e--------~  370 (832)
                      +++.|++.|+..+.  .|.++|.|  ||.|||||++.|+.+|.+++ .|+.++++|.|    |+..+...+        +
T Consensus        25 ~~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~  101 (394)
T 2dlc_X           25 NPQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYY  101 (394)
T ss_dssp             CHHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHH
Confidence            36788888886443  48899988  79999999999999999998 89999999999    864332222        4


Q ss_pred             HHHHHHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHc
Q psy17575        371 FTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKN  448 (832)
Q Consensus       371 ~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~  448 (832)
                      ...|..+|.|+|++|++  +.+||+++. +-+++..++    .|.|+||..++++....                     
T Consensus       102 ~~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~~---------------------  155 (394)
T 2dlc_X          102 ELTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGAD---------------------  155 (394)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTTT---------------------
T ss_pred             HHHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccHh---------------------
Confidence            46788899999999995  789999763 223444444    78999999988753100                     


Q ss_pred             CcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHH
Q psy17575        449 GLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCN  528 (832)
Q Consensus       449 g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~  528 (832)
                              ..|.    .++   .           ..|     .-+|..-.+.|..+++++|+++|.|...+...+..|+.
T Consensus       156 --------~~r~----~~~---~-----------~~g-----~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~  204 (394)
T 2dlc_X          156 --------VVKQ----VAN---P-----------LLS-----GLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLP  204 (394)
T ss_dssp             --------TSCC----CSS---C-----------CTH-----HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGG
T ss_pred             --------hhcc----cCC---c-----------cce-----eeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHH
Confidence                    0000    000   0           001     12444444556667999999999999999999999999


Q ss_pred             hcCCCCCCccccccc-CCC-CcccchhHHH
Q psy17575        529 ALDIYCPVQWEYGRL-NVN-YTVVSKRKIA  556 (832)
Q Consensus       529 aL~~~~P~~~ef~hL-~l~-gtkLSKRk~~  556 (832)
                      .+|+..|.......| .++ |+|||||..+
T Consensus       205 r~~~~~p~~l~~pll~gl~~G~KMSKS~~n  234 (394)
T 2dlc_X          205 SLGYKKRAHLMNPMVPGLAQGGKMSASDPN  234 (394)
T ss_dssp             GGTCCCCEEEEECCCCCCC----------C
T ss_pred             HcCCCCCEEEecccccCCCCCCcCCCCCCC
Confidence            999888853332222 346 8999999864

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=99.60  E-value=3.7e-15  Score=169.97  Aligned_cols=274  Identities=17%  Similarity=0.045  Sum_probs=166.9

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~WL  381 (832)
                      +++--+|.|||+|||||+|++++...+||.  ..|.-++++.+||                |..-..++.+.|.+++++|
T Consensus         6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   85 (500)
T 2d5b_A            6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL   85 (500)
T ss_dssp             EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            566777899999999999999999999994  5999999999998                5555678899999999999


Q ss_pred             CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHH-------HHhccCCCCCCCCCC-ChhH--------
Q psy17575        382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSD-------EMKGFNPLPSPWRER-PVEE--------  438 (832)
Q Consensus       382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~e-------el~~~~~~~~~~R~r-~~ee--------  438 (832)
                      |+.+|..+.+++  |.+...+...+|.++|++|.+     .|...       ++..   ..|+ |+. +++.        
T Consensus        86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~---g~c~-~~~~~v~~~~~~~wf~  161 (500)
T 2d5b_A           86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE---GLCP-IHGRPVERRKEGNYFF  161 (500)
T ss_dssp             TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT---TBCT-TTCSBCEEEEEEEEEE
T ss_pred             CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccC---CcCC-CCCCeeeEEecCceEE
Confidence            999997666777  888888888999999999987     24332       2211   0111 111 1110        


Q ss_pred             hHHHHHHHHcCcccCCC-ceEE--EEe---cc-cCCCCCceEEEeeeC---CCCCCC-CceeEee------------ccc
Q psy17575        439 NVKLFEAMKNGLIDEGE-ATLR--MKI---TL-EEGKQDPVAYRIKFL---PHHRTG-DSWCIYP------------TYD  495 (832)
Q Consensus       439 ~L~~f~~m~~g~~~~g~-~~lR--~K~---~~-~~~~~D~V~~Ri~~~---~h~r~g-d~~~i~P------------tY~  495 (832)
                      .+..|.+.....++++. ...-  .+-   ++ .++..|+.+-|....   .+++-+ .++++|-            .|+
T Consensus       162 ~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~  241 (500)
T 2d5b_A          162 RMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYP  241 (500)
T ss_dssp             CGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTT
T ss_pred             EcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcCCC
Confidence            00001111000001100 0000  000   00 012356666552100   010000 0111110            233


Q ss_pred             eeeeeecCCCCcceeeecccccccch-hHHHHHHhcCCCCCCc-ccccccCC-CCcccchhHHHHhhhcCccCCCCCcch
Q psy17575        496 YTHCLCDSIEHITHSLCTKEFQSRRS-SYYWLCNALDIYCPVQ-WEYGRLNV-NYTVVSKRKIAKLIEENIVNDWDDPRL  572 (832)
Q Consensus       496 fA~~VdD~l~gITHvlRg~E~~~~~~-~~~~L~~aL~~~~P~~-~ef~hL~l-~gtkLSKRk~~~lv~~g~v~gwdDPr~  572 (832)
                      ..+..++ ..+.+..+.|.|+...+. ....+..++|+..|.. +..+++.. +|.|||||+++      .|        
T Consensus       242 ~~~~~~~-~~p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN------~i--------  306 (500)
T 2d5b_A          242 EGEAYRT-FWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN------VV--------  306 (500)
T ss_dssp             TCHHHHH-HGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC------CC--------
T ss_pred             CCchHHH-cCCCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC------CC--------
Confidence            2211111 225678888999986222 2224556778877763 34678888 89999999964      22        


Q ss_pred             hhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Q psy17575        573 FTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVR  614 (832)
Q Consensus       573 ~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r  614 (832)
                       ++..+.+ +|.++|++-|++..+-...+..|+++.+.....
T Consensus       307 -~p~d~i~-~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~  346 (500)
T 2d5b_A          307 -DPFALLE-KYGRDALRYYLLREIPYGQDTPVSEEALRTRYE  346 (500)
T ss_dssp             -CHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred             -CHHHHHH-hcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence             4555554 588999999999877777889999998877554

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=99.50  E-value=1.6e-13  Score=156.62  Aligned_cols=256  Identities=14%  Similarity=0.106  Sum_probs=154.4

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCC----------Ccccc-------------cHHHHHHHHH
Q psy17575        325 PPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDT----------NPEKE-------------EEKFFTGIKD  376 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDT----------Dp~r~-------------~~e~~~~I~e  376 (832)
                      +|+|+|++||||||+.++-..++|     .+.-.|+..|+|+          |.+-.             ...|.+.+.+
T Consensus        49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~  128 (501)
T 3sp1_A           49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN  128 (501)
T ss_dssp             CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            588889999999999988755554     4667888889998          44321             3578999999


Q ss_pred             HHHHcCCCcC-cccccchhHHHHHHHHHHHHHcCCccc-----cCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCc
Q psy17575        377 MVQWLGYKPY-QITHSSDYFHQLYEWAVKLIKKGLAYV-----CHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGL  450 (832)
Q Consensus       377 dL~WLGl~pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~-----C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~  450 (832)
                      +++.||+.++ ..+..+++.+...+...+|+++|+||.     .||... ...+ +.-+ .+  +.      -++|..|.
T Consensus       129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~-f~~y-G~ls-~~--~~------~~~~~~g~  197 (501)
T 3sp1_A          129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC-FKSY-GEMA-GI--DL------IDKDMTLP  197 (501)
T ss_dssp             HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG-CTTT-TTTT-C-------------------
T ss_pred             HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc-cCCc-cccC-CC--Ch------hhhhccCC
Confidence            9999999876 345678999999999999999999995     355443 1111 1111 11  11      02344432


Q ss_pred             ccCCCceEEEEec-ccCCCCCceEEEee--eCCC-CCCCCce-eEeeccceeeee-ecCCCCcc--eeeeccccc-ccch
Q psy17575        451 IDEGEATLRMKIT-LEEGKQDPVAYRIK--FLPH-HRTGDSW-CIYPTYDYTHCL-CDSIEHIT--HSLCTKEFQ-SRRS  521 (832)
Q Consensus       451 ~~~g~~~lR~K~~-~~~~~~D~V~~Ri~--~~~h-~r~gd~~-~i~PtY~fA~~V-dD~l~gIT--HvlRg~E~~-~~~~  521 (832)
                              |..++ ......|+++|+-.  ..++ +.=.+-| .+.|.+|..|++ .....|-+  .-.=|.|++ ++..
T Consensus       198 --------r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHhe  269 (501)
T 3sp1_A          198 --------RVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHI  269 (501)
T ss_dssp             --------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHH
T ss_pred             --------ccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHH
Confidence                    11111 11234799999641  1122 1001123 369999988765 22333433  333489997 5666


Q ss_pred             hHHHHHHhc-CCCCCCcccc-cccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC
Q psy17575        522 SYYWLCNAL-DIYCPVQWEY-GRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG  599 (832)
Q Consensus       522 ~~~~L~~aL-~~~~P~~~ef-~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~  599 (832)
                      ....+..++ |-+.+.+|-- +++.++|.||||+.++               ..|+..+.++||.|++|+-|++... .+
T Consensus       270 neiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~~lls~~-yr  333 (501)
T 3sp1_A          270 NEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRYLCLTSH-YR  333 (501)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHHHHHTSC-TT
T ss_pred             HHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHHHHHhcc-CC
Confidence            666666666 4333444543 7888999999999975               2478999999999999999998763 56


Q ss_pred             CCcccCHHHHHHHHHH
Q psy17575        600 AQAVVSPNMLEAVVRE  615 (832)
Q Consensus       600 ~~~~~~~~~le~~~r~  615 (832)
                      ++..|+++.|+...+.
T Consensus       334 ~~l~fs~~~l~~a~~~  349 (501)
T 3sp1_A          334 NQLKFSLDNLQASKIA  349 (501)
T ss_dssp             SCEECCHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHh
Confidence            7788998888775544

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=99.38  E-value=2.9e-12  Score=148.45  Aligned_cols=277  Identities=13%  Similarity=0.050  Sum_probs=159.8

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCE---EEEeccCC-------------CcccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAA--AHNGI---CFLRYDDT-------------NPEKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~---~iLRiDDT-------------Dp~r~~~e~~~~I~edL~WL  381 (832)
                      +++--+|.|||+|||||+|++++...+||  +..|.   |+.-+||.             +|......+.+.|.+++++|
T Consensus        21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l  100 (560)
T 3h99_A           21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF  100 (560)
T ss_dssp             EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence            67788899999999999999999988888  44554   44445543             24455678899999999999


Q ss_pred             CCCcCcccccc--hhHHHHHHHHHHHHHcCCcc-------ccCC-----CHHHHhccC---------CCCC-CCCC-CCh
Q psy17575        382 GYKPYQITHSS--DYFHQLYEWAVKLIKKGLAY-------VCHQ-----KSDEMKGFN---------PLPS-PWRE-RPV  436 (832)
Q Consensus       382 Gl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY-------~C~C-----s~eel~~~~---------~~~~-~~R~-r~~  436 (832)
                      |+.+|..+..+  .+.+...+...+|.++|.+|       .|..     +..++...-         +..| .|.. ...
T Consensus       101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~  180 (560)
T 3h99_A          101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP  180 (560)
T ss_dssp             TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred             CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence            99999654344  34444456677899999999       3321     112221100         0000 0000 000


Q ss_pred             hHhHHHHHHHHcCcc-cCC-Cc------eEEEEecc--------------------------cCCCCCceEEEeeeC---
Q psy17575        437 EENVKLFEAMKNGLI-DEG-EA------TLRMKITL--------------------------EEGKQDPVAYRIKFL---  479 (832)
Q Consensus       437 ee~L~~f~~m~~g~~-~~g-~~------~lR~K~~~--------------------------~~~~~D~V~~Ri~~~---  479 (832)
                      .       ++.+... ..| ..      .+.|+++.                          ..+..|+.+-|-...   
T Consensus       181 ~-------~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~  253 (560)
T 3h99_A          181 T-------ELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGF  253 (560)
T ss_dssp             G-------GCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSC
T ss_pred             h-------hhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCe
Confidence            0       0000000 000 01      12222210                          013456666663311   


Q ss_pred             CCCCCCCceeEeeccc----eeeee------------------ecCCCCcceeeecccccccc-hhHHHHHHhcCCCCCC
Q psy17575        480 PHHRTGDSWCIYPTYD----YTHCL------------------CDSIEHITHSLCTKEFQSRR-SSYYWLCNALDIYCPV  536 (832)
Q Consensus       480 ~h~r~gd~~~i~PtY~----fA~~V------------------dD~l~gITHvlRg~E~~~~~-~~~~~L~~aL~~~~P~  536 (832)
                      +-|-. ++-++|.-++    |..++                  .|....+.|++ |.|++... ..+..++.++|+..|.
T Consensus       254 ~iP~~-~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~  331 (560)
T 3h99_A          254 EIPNA-PGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPS  331 (560)
T ss_dssp             BCTTC-TTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCS
T ss_pred             eCCCC-CCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCc
Confidence            11111 1122221110    10011                  23444567777 99988633 3333578889988784


Q ss_pred             cc-cccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCC-CCcccCHHHHHH-HH
Q psy17575        537 QW-EYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTG-AQAVVSPNMLEA-VV  613 (832)
Q Consensus       537 ~~-ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~-~~~~~~~~~le~-~~  613 (832)
                      .. -.+++.++|.|||||+++      .         .++..+.+. |.++|++-|++..+... .+..|+++.+.+ .+
T Consensus       332 ~v~~hg~v~~~G~KMSKS~GN------v---------v~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~  395 (560)
T 3h99_A          332 NLFVHGYVTVNGAKMSKSRGT------F---------IKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVN  395 (560)
T ss_dssp             EEEEECCEEETTEECCTTTTC------C---------CBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHH
T ss_pred             EEEEEeEEEeCCeeccccCCC------c---------CCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHH
Confidence            32 257777899999999964      2         256666665 89999999999887544 688999988764 56


Q ss_pred             HHhhccCC
Q psy17575        614 REVLNDTA  621 (832)
Q Consensus       614 r~~l~~~a  621 (832)
                      ++.++...
T Consensus       396 ~~l~~~l~  403 (560)
T 3h99_A          396 ADIVNKVV  403 (560)
T ss_dssp             HHCCCCCT
T ss_pred             HHHHHHHH
Confidence            66665543

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=99.38  E-value=5.4e-13  Score=155.83  Aligned_cols=246  Identities=12%  Similarity=-0.036  Sum_probs=138.7

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCC------------------c------------------
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTN------------------P------------------  363 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTD------------------p------------------  363 (832)
                      .|.|||++||||+|++++-..+||-  ..|-=+.|   |.|.+                  +                  
T Consensus       111 spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~  190 (592)
T 1iq0_A          111 SVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQD  190 (592)
T ss_dssp             CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHH
Confidence            6999999999999999987777663  33444444   45542                  1                  


Q ss_pred             ----------------------ccccHHHHHHHHHHHHHcCCCcCcccccchh--HHHHHHHHHHHHHcCCccccCCCHH
Q psy17575        364 ----------------------EKEEEKFFTGIKDMVQWLGYKPYQITHSSDY--FHQLYEWAVKLIKKGLAYVCHQKSD  419 (832)
Q Consensus       364 ----------------------~r~~~e~~~~I~edL~WLGl~pd~~~~qSd~--~~~~ye~A~~Li~~G~AY~C~Cs~e  419 (832)
                                            .+-...+.+.|.++++|||+.+|.....|++  .+.+.+...+|.++|.+|.|.-.  
T Consensus       191 ~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g--  268 (592)
T 1iq0_A          191 PEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREG--  268 (592)
T ss_dssp             TTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS--
T ss_pred             HHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEeEEeccCCcccccchHHHHHHHHHHCCCcccCccc--
Confidence                                  1122356778999999999999876667766  44666778899999999988211  


Q ss_pred             HHhccCCCCCCCCCCChhHhHHHHHHHHcCcccC-CCceEEEEecccCC--CCCc--eEE--------Eeee-CCCCCCC
Q psy17575        420 EMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDE-GEATLRMKITLEEG--KQDP--VAY--------RIKF-LPHHRTG  485 (832)
Q Consensus       420 el~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~-g~~~lR~K~~~~~~--~~D~--V~~--------Ri~~-~~h~r~g  485 (832)
                         ...+.  .|-..  ++    |     |...+ +..+++ |-+-...  ..|.  +.+        |... ...|.. 
T Consensus       269 ---~~~G~--~~~~~--~~----~-----g~~~~l~~~vi~-ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~~~~~~p~~-  330 (592)
T 1iq0_A          269 ---KYAGA--LVMDA--SP----V-----IPGLEDPFFVLL-RSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYP-  330 (592)
T ss_dssp             ---TTTTC--EEEEC--TT----T-----SCSCSCCEEEEE-CTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCT-
T ss_pred             ---CcCCC--EEEec--hh----c-----CCCCCCCceEEE-ecCCceEEecchHHHHHHHhhhhhhhhhhhhhcCcch-
Confidence               10110  00000  00    0     10000 111211 1110000  1222  222        2211 011111 


Q ss_pred             CceeEeeccceeeeeecCCCCccee--eecccccccchhHHHHHHhcCCCC-CCcc-cc--cccCCCCcccchhHHHHhh
Q psy17575        486 DSWCIYPTYDYTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNALDIYC-PVQW-EY--GRLNVNYTVVSKRKIAKLI  559 (832)
Q Consensus       486 d~~~i~PtY~fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~aL~~~~-P~~~-ef--~hL~l~gtkLSKRk~~~lv  559 (832)
                           .|.|+- -|+.-...+.+|+  |.|.||..+.+++..++.+||+.. +..| ++  +.+.++|.|||||+++.  
T Consensus       331 -----r~~w~~-~g~~~~~~~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~--  402 (592)
T 1iq0_A          331 -----GLRTSA-PEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLA--  402 (592)
T ss_dssp             -----TCEEEE-EEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----C--
T ss_pred             -----hhcccc-cCcccCCCCCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCc--
Confidence                 122221 2332233466777  789999999999989999999854 3333 34  44778899999999742  


Q ss_pred             hcCccCCCCCcchhhHHHHHHcC------------------------CCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575        560 EENIVNDWDDPRLFTLTALRRRG------------------------FPPEAINKFCARMGVTGAQAVVSPNMLEAV  612 (832)
Q Consensus       560 ~~g~v~gwdDPr~~tL~~lrrrG------------------------~~PeAI~nfl~~lG~s~~~~~~~~~~le~~  612 (832)
                                   .++..|.+.|                        +.++||+-|++.-. ..++..|+++.+.++
T Consensus       403 -------------v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~-~~~~~~Fd~d~~~~~  465 (592)
T 1iq0_A          403 -------------VSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTE-PKKQIDFRYQEALSF  465 (592)
T ss_dssp             -------------CBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSC-TTSCEEECHHHHHCS
T ss_pred             -------------cCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcC-CCCCCeecHHHHHHH
Confidence                         2577777766                        55666666666643 355666666666544

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}

Probab=99.37  E-value=1.6e-12  Score=141.23  Aligned_cols=189  Identities=14%  Similarity=0.064  Sum_probs=137.9

Q ss_pred             HHHHHHhhhh-cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC-------CCcccccHHHHHHHHHH
Q psy17575        306 HDLLREHIKY-TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD-------TNPEKEEEKFFTGIKDM  377 (832)
Q Consensus       306 ~~~~~~hl~~-~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD-------TDp~r~~~e~~~~I~ed  377 (832)
                      .+.|.+.|+. ..-.+.+.|.  |||.|||||+ .++.+|...+..|+.+++.|-|       +.+..+..++...|..+
T Consensus        20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~   96 (323)
T 2cyb_A           20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV   96 (323)
T ss_dssp             HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence            5777888864 2334667785  6799999997 6799999999999999999966       32334667888999999


Q ss_pred             HHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCC
Q psy17575        378 VQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGE  455 (832)
Q Consensus       378 L~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~  455 (832)
                      +.|+|++|++  +.+||+++.. -++++    ....|.|+||..++.+....  .                  |+.. + 
T Consensus        97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~~~--~------------------~~~~-~-  149 (323)
T 2cyb_A           97 FIALGLDESRAKFVLGSEYQLS-RDYVL----DVLKMARITTLNRARRSMDE--V------------------SRRK-E-  149 (323)
T ss_dssp             HHHTTCCTTTCEEEEGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHTTT--T------------------CSCS-S-
T ss_pred             HHHhCCCccceEEEEcchhccc-hHHHH----HHHHHhCccCHHHHhccchh--h------------------cccc-C-
Confidence            9999999985  5889997632 12222    22347799999998763110  0                  0000 0 


Q ss_pred             ceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCC
Q psy17575        456 ATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCP  535 (832)
Q Consensus       456 ~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P  535 (832)
                                    +         .  ..|     .-+|.+..+.|+.+.+++||++|.|...+......|.+.+|...|
T Consensus       150 --------------~---------~--~~g-----~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p  199 (323)
T 2cyb_A          150 --------------D---------P--MVS-----QMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSP  199 (323)
T ss_dssp             --------------S---------C--BTH-----HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCC
T ss_pred             --------------C---------C--Cch-----hhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCc
Confidence                          0         0  011     337777778888889999999999999999999999999998888


Q ss_pred             Cccccccc-CCCCcccchhH
Q psy17575        536 VQWEYGRL-NVNYTVVSKRK  554 (832)
Q Consensus       536 ~~~ef~hL-~l~gtkLSKRk  554 (832)
                      .......| .++|+||||+.
T Consensus       200 ~~l~~pll~~l~G~KMSKS~  219 (323)
T 2cyb_A          200 VCLHTPILVGLDGQKMSSSK  219 (323)
T ss_dssp             EEEEECCCBCTTSSBCCTTT
T ss_pred             eEEecCcccCCCCCcccCCc
Confidence            64444444 45799999995

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*

Probab=99.35  E-value=1.3e-12  Score=144.66  Aligned_cols=191  Identities=12%  Similarity=0.120  Sum_probs=125.7

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CC-cc------cccHHHHHH-
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TN-PE------KEEEKFFTG-  373 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TD-p~------r~~~e~~~~-  373 (832)
                      .+.|.+.|+...-.|.++|.  |||.|||||+..++.+|.+.+ .|+.++++|.|    |+ |.      +....+.+. 
T Consensus        24 ~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~  100 (372)
T 1n3l_A           24 EEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYENV  100 (372)
T ss_dssp             HHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHH
Confidence            56788888764456889999  679999999999999999987 79999999999    85 42      224445555 


Q ss_pred             HHHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcc
Q psy17575        374 IKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLI  451 (832)
Q Consensus       374 I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~  451 (832)
                      |...+.|+|++|++  +..||++. .+-+++..++.    |.|+||..++++....                        
T Consensus       101 i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~~------------------------  151 (372)
T 1n3l_A          101 IKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGAE------------------------  151 (372)
T ss_dssp             HHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTTT------------------------
T ss_pred             HHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchhh------------------------
Confidence            55567999999984  78999973 12245555554    8899999888752100                        


Q ss_pred             cCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC
Q psy17575        452 DEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD  531 (832)
Q Consensus       452 ~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~  531 (832)
                           +.|.+       .+..           .| . ..||..+   +.|=.+.+.+||++|.|...+.....-|+..+|
T Consensus       152 -----v~~~~-------~~~~-----------~g-~-~~YP~lQ---aaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~  203 (372)
T 1n3l_A          152 -----VVKQV-------EHPL-----------LS-G-LLYPGLQ---ALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALG  203 (372)
T ss_dssp             -----TSCCC-------SSCC-----------HH-H-HHHHHHH---HHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGT
T ss_pred             -----hhccc-------CCCc-----------ce-e-eecchHh---hccHHHhcCCEEEcChhHHHHHHHHHHHHHHcC
Confidence                 00000       0000           01 0 1134322   233334688999999999999999999999999


Q ss_pred             CCCCCccccccc-CCCCcccchhHHH
Q psy17575        532 IYCPVQWEYGRL-NVNYTVVSKRKIA  556 (832)
Q Consensus       532 ~~~P~~~ef~hL-~l~gtkLSKRk~~  556 (832)
                      +..|.......| .++|+|||||..+
T Consensus       204 ~~~p~~l~~pll~gldG~KMSKS~~n  229 (372)
T 1n3l_A          204 YSKRVHLMNPMVPGLTGSKMSSSEEE  229 (372)
T ss_dssp             CCCCEEEEECCCCCSSCC-------C
T ss_pred             CCCCEEEecCccCCCCcccccCCCCC
Confidence            888854432222 3579999999864

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=99.34  E-value=5.5e-12  Score=144.85  Aligned_cols=278  Identities=15%  Similarity=0.092  Sum_probs=160.4

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------cccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------PEKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p~r~~~e~~~~I~edL~WL  381 (832)
                      .++=-.|.|||.|||||+|++++...+||.  ..|.-++++-++|                |..-...+.+.|.+++++|
T Consensus        15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l   94 (524)
T 2x1l_A           15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL   94 (524)
T ss_dssp             EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            455667999999999999999999999985  6899999999988                3233457899999999999


Q ss_pred             CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHH-------HHhccC-CCCCCCCCC-ChhH-------
Q psy17575        382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSD-------EMKGFN-PLPSPWRER-PVEE-------  438 (832)
Q Consensus       382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~e-------el~~~~-~~~~~~R~r-~~ee-------  438 (832)
                      |+.+|..+.+|+  +.+...+...+|.++|.+|..     +|...       ++.... +..|+.|+. +++.       
T Consensus        95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF  174 (524)
T 2x1l_A           95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF  174 (524)
T ss_dssp             TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred             CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence            999987666777  888888888999999999954     45432       111000 011221222 1110       


Q ss_pred             -hHHHHHHHHcCcccCCCceEE---EEe---cc-cCCCCCceEEEeee---CCCCCCCC-ceeEee-----ccceee---
Q psy17575        439 -NVKLFEAMKNGLIDEGEATLR---MKI---TL-EEGKQDPVAYRIKF---LPHHRTGD-SWCIYP-----TYDYTH---  498 (832)
Q Consensus       439 -~L~~f~~m~~g~~~~g~~~lR---~K~---~~-~~~~~D~V~~Ri~~---~~h~r~gd-~~~i~P-----tY~fA~---  498 (832)
                       .+..|.++....++++...+.   .|-   ++ ..+..|+.+-|...   .|.|  ++ +.++|-     .+-|+.   
T Consensus       175 ~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP--~~~~~~~yvWfds~~~~~~~~g~  252 (524)
T 2x1l_A          175 FRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP--DHPDHVMYVWVDALTNYLTGVGF  252 (524)
T ss_dssp             ECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET--TEEEEEECHHHHHHTHHHHTTTT
T ss_pred             eeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC--CCCCCEEEEecCCchHHHHHcCC
Confidence             000011100000000100000   000   00 11345666665311   0111  10 111100     000000   


Q ss_pred             eeec-----CCCCcceeeecccccccchh-HHHHHHhcCCCCCC-cccccccCCCCcccchhHHHHhhhcCccCCCCCcc
Q psy17575        499 CLCD-----SIEHITHSLCTKEFQSRRSS-YYWLCNALDIYCPV-QWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPR  571 (832)
Q Consensus       499 ~VdD-----~l~gITHvlRg~E~~~~~~~-~~~L~~aL~~~~P~-~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr  571 (832)
                      +-.+     ....++.-+-|.|+.--... ...+..++|+..|. .|..+++..+|.|||||+++      .        
T Consensus       253 p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN------~--------  318 (524)
T 2x1l_A          253 PDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGN------V--------  318 (524)
T ss_dssp             TCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEE------S--------
T ss_pred             CCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCC------C--------
Confidence            0000     01134555568887632111 12344566877663 45568888899999999964      1        


Q ss_pred             hhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575        572 LFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE  615 (832)
Q Consensus       572 ~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~  615 (832)
                       .++..+.+. |.++|++-|++..+-...+..|+++.+......
T Consensus       319 -v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~  360 (524)
T 2x1l_A          319 -VDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNA  360 (524)
T ss_dssp             -SCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHH
T ss_pred             -CCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence             245555553 889999999998776778899999998776543

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=99.29  E-value=4.1e-12  Score=146.54  Aligned_cols=282  Identities=15%  Similarity=0.089  Sum_probs=144.9

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCc-------------ccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNP-------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp-------------~r~~~e~~~~I~edL~WL  381 (832)
                      ++|.-.|.|||+|||||+|++++...+||-     ++..++.-+||.+.             ..-...+.+.|.+++++|
T Consensus        28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l  107 (536)
T 4dlp_A           28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL  107 (536)
T ss_dssp             EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            788989999999999999999998888873     44568888888654             334567899999999999


Q ss_pred             CCCcCcccccch--hHHHHHHHHHHHHHcCCcccc-----CCCHHH-------Hhcc-CCCCCCCCCCChhHh-------
Q psy17575        382 GYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC-----HQKSDE-------MKGF-NPLPSPWRERPVEEN-------  439 (832)
Q Consensus       382 Gl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C-----~Cs~ee-------l~~~-~~~~~~~R~r~~ee~-------  439 (832)
                      |+.+|..+..++  +.+...+...+|+++|.+|.+     +|...+       +..- .+..| +|+..+-+-       
T Consensus       108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c-~~~g~~~e~~~~~~~f  186 (536)
T 4dlp_A          108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRY-GPQGTPVEWVEEESYF  186 (536)
T ss_dssp             TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEE-CTTSSBCEEEEEEEEE
T ss_pred             CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcc-cCCCCcceEEeccceE
Confidence            999996544444  777788888899999999976     455432       2110 01101 111111000       


Q ss_pred             --HHHHHHHHcCcccCCCceE-----E--EEecccCCCCCceEEEeee---CCCCCCCCceeEeeccc-----eeee---
Q psy17575        440 --VKLFEAMKNGLIDEGEATL-----R--MKITLEEGKQDPVAYRIKF---LPHHRTGDSWCIYPTYD-----YTHC---  499 (832)
Q Consensus       440 --L~~f~~m~~g~~~~g~~~l-----R--~K~~~~~~~~D~V~~Ri~~---~~h~r~gd~~~i~PtY~-----fA~~---  499 (832)
                        +..|.+.....+++++..+     |  +.--+..+..|+.+-|-..   .|-|-+. +-++|--++     ++..   
T Consensus       187 ~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~-~~v~yvWfda~~~y~s~~~~~  265 (536)
T 4dlp_A          187 FRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDE-KHVMYVWVDALTNYITALGYP  265 (536)
T ss_dssp             ECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCT-TSEECHHHHHHHHHHHTTTTT
T ss_pred             EecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCC-CCceEEeeCCcHHHHHhcCCC
Confidence              0001100000000010000     0  0000011235655555211   0111000 001100000     0000   


Q ss_pred             --eec--CCCCcceeeecccccccc-hhHHHHHHhcCCCCCCccc-ccccCCCCcccchhHHHHhhhcCccCCCCCcchh
Q psy17575        500 --LCD--SIEHITHSLCTKEFQSRR-SSYYWLCNALDIYCPVQWE-YGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLF  573 (832)
Q Consensus       500 --VdD--~l~gITHvlRg~E~~~~~-~~~~~L~~aL~~~~P~~~e-f~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~  573 (832)
                        -.+  ......--+-|.|++... ..+..+..++|+..|...- .+++.++|.|||||+++-      |         
T Consensus       266 ~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G~KMSKS~GNv------i---------  330 (536)
T 4dlp_A          266 DTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNV------I---------  330 (536)
T ss_dssp             CTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC------------------C---------
T ss_pred             CCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCCceecccCCCC------C---------
Confidence              000  000112234488877532 2233456678887665332 366777999999999752      1         


Q ss_pred             hHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH-HHHhhcc
Q psy17575        574 TLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV-VREVLND  619 (832)
Q Consensus       574 tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~-~r~~l~~  619 (832)
                      ++..+.+ .+.++|++-|++..+-...+..|+++.+... +.+..+.
T Consensus       331 ~p~d~i~-~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~  376 (536)
T 4dlp_A          331 DPFELVE-RYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLAND  376 (536)
T ss_dssp             CHHHHHH-HHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCC
T ss_pred             CHHHHHH-HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3444443 3679999999998765667889999887654 4444333

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=99.03  E-value=4.3e-10  Score=127.82  Aligned_cols=223  Identities=16%  Similarity=0.129  Sum_probs=135.6

Q ss_pred             CCceEEee-CCCCCCcCchHHHHHHHHHHHHHHhc--CCEEEEecc-------------------------CCC---ccc
Q psy17575        317 GGKVRTRF-PPEPNGILHIGHAKAININFGYAAAH--NGICFLRYD-------------------------DTN---PEK  365 (832)
Q Consensus       317 ~~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~~--gG~~iLRiD-------------------------DTD---p~r  365 (832)
                      +.+|+.=| +|.|||+||+||+|++++...+||-.  .|-=++|.=                         ..+   |+.
T Consensus        29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~  108 (464)
T 3fnr_A           29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ  108 (464)
T ss_dssp             SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence            45789999 79999999999999999998888642  333333310                         000   110


Q ss_pred             c----------------------------------cHHHHHHHHHHHHHcCCCcCcccccchhHHHHHHHHHHHHHcCCc
Q psy17575        366 E----------------------------------EEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLA  411 (832)
Q Consensus       366 ~----------------------------------~~e~~~~I~edL~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~A  411 (832)
                      .                                  .....+.|.++++.||+..|....-|..+..+-+..++|.++|.+
T Consensus       109 ~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~~~~~vv~~L~~~g~~  188 (464)
T 3fnr_A          109 YYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGI  188 (464)
T ss_dssp             CCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGSTTHHHHHHHHHHTTCE
T ss_pred             hcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHHHHHHHHHHHHHCCCE
Confidence            0                                  011233567777778877775433333333333445567777777


Q ss_pred             cccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEe
Q psy17575        412 YVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIY  491 (832)
Q Consensus       412 Y~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~  491 (832)
                      |..                                      +|..+  ++.+......|.|+-|       ++|     .
T Consensus       189 ~e~--------------------------------------dGa~~--~~~~~~g~~~~~vl~k-------sDG-----~  216 (464)
T 3fnr_A          189 YEQ--------------------------------------EGKIW--LASSQKGDEKDRVIIR-------EDG-----R  216 (464)
T ss_dssp             EEE--------------------------------------TTEEE--ECGGGGTCSSCEEEEC-------TTS-----C
T ss_pred             EEe--------------------------------------CCeEE--EEecccCCCCceEEEe-------CCC-----c
Confidence            742                                      12111  2221111113555554       344     4


Q ss_pred             eccc---eeeeeecCCCCccee--eecccccccchhHHHHHHhcCCCCCCccccccc-----CC--CCc--ccchhHHHH
Q psy17575        492 PTYD---YTHCLCDSIEHITHS--LCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL-----NV--NYT--VVSKRKIAK  557 (832)
Q Consensus       492 PtY~---fA~~VdD~l~gITHv--lRg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL-----~l--~gt--kLSKRk~~~  557 (832)
                      |||.   +|..+++..++++++  |+|.|+....+++..+++++|+.+|   .+.|+     ++  +|.  |||||+++.
T Consensus       217 ~~Y~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~---~~~h~~~g~V~l~~dG~~~KMSKr~Gn~  293 (464)
T 3fnr_A          217 GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSN---NLEIILAQMVSLLKDGEPYKMSKRAGNF  293 (464)
T ss_dssp             BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGG---GEEEEEECCEEEEETTEECCC---CCSS
T ss_pred             eehhhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcCCCcc---ceEEEEeeeEEecCCCcccCCcCcCCCC
Confidence            5665   888999999999999  5899999988888889999998755   23343     34  674  999998531


Q ss_pred             hhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Q psy17575        558 LIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEA  611 (832)
Q Consensus       558 lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~  611 (832)
                                     .++..+.+. +.++|++-|+..-. ..++..|+++.+.+
T Consensus       294 ---------------v~l~dll~~-~g~dalRy~~l~~~-~~~d~~Fd~~~~~~  330 (464)
T 3fnr_A          294 ---------------ILMSDVVDE-IGSDALRYIFLSKK-CDTHLEFDISDLQK  330 (464)
T ss_dssp             ---------------CBHHHHHHH-HCHHHHHHHTTSSC-TTSCEEEEGGGGGC
T ss_pred             ---------------CCHHHHHhh-ccHHHHHHHHHhcC-CCCCCccCHHHHHH
Confidence                           245555543 55888887776542 45566777766544

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=98.93  E-value=9.1e-10  Score=127.93  Aligned_cols=96  Identities=17%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcc-------------cccHHHHHHHHHHHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPE-------------KEEEKFFTGIKDMVQW  380 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~-------------r~~~e~~~~I~edL~W  380 (832)
                      -++|--.|.|||++||||+|++++...+||     .+.-.++.-+||.+.+             .-...+.+.|.+++++
T Consensus        28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~  107 (564)
T 3kfl_A           28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE  107 (564)
T ss_dssp             EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            377888899999999999999999887777     3556777778877643             2245788899999999


Q ss_pred             cCCCcCcccccc--hhHHHHHHHHHHHHHcCCcccc
Q psy17575        381 LGYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       381 LGl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ||+.+|.....+  .+.+...+...+|.++|.+|..
T Consensus       108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~  143 (564)
T 3kfl_A          108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG  143 (564)
T ss_dssp             TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence            999999643444  4666677778899999999865

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=98.82  E-value=2.7e-09  Score=124.91  Aligned_cols=189  Identities=17%  Similarity=0.155  Sum_probs=119.5

Q ss_pred             CCceEEee-CCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccC------------------------------
Q psy17575        317 GGKVRTRF-PPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDD------------------------------  360 (832)
Q Consensus       317 ~~~v~tRF-aPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDD------------------------------  360 (832)
                      +++|+.=| .|.|+|+|||||+|++++-..+||-  +-|-=+.|   |.|                              
T Consensus       142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~  221 (607)
T 1f7u_A          142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF  221 (607)
T ss_dssp             CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred             CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence            34676666 8999999999999999987766664  34444444   333                              


Q ss_pred             ------------------------------------CCcc------cccHHHHHHHHHHHHHcCCCcCcccccchhH-HH
Q psy17575        361 ------------------------------------TNPE------KEEEKFFTGIKDMVQWLGYKPYQITHSSDYF-HQ  397 (832)
Q Consensus       361 ------------------------------------TDp~------r~~~e~~~~I~edL~WLGl~pd~~~~qSd~~-~~  397 (832)
                                                          -|++      .-...+.+.+.++++.||+..|.....|++. +.
T Consensus       222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~  301 (607)
T 1f7u_A          222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES  301 (607)
T ss_dssp             HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred             HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence                                                1110      1134567788999999999998666667776 56


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCC-ceEEEe
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQD-PVAYRI  476 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D-~V~~Ri  476 (832)
                      +-+..+.|.++|.+|...                                      |..+++  ++......| .|+.| 
T Consensus       302 ~~~vi~~L~~kG~~ye~d--------------------------------------Ga~~~~--~~~~g~~~d~~v~~K-  340 (607)
T 1f7u_A          302 MLKAIDLFKEKGLTHEDK--------------------------------------GAVLID--LTKFNKKLGKAIVQK-  340 (607)
T ss_dssp             HHHHHHHHHHTTCEEEET--------------------------------------TEEEEE--GGGTCTTTCEEEEEC-
T ss_pred             HHHHHHHHHhCCCEEEEC--------------------------------------CcEEEE--ecccCCCCCceeEec-
Confidence            667778899999999621                                      111111  000000112 23322 


Q ss_pred             eeCCCCCCCCceeEeeccceeeeeecC-CCCcceee--ecccccccchhHHHHHHhcCCCCCCcccccccCC-CCcccch
Q psy17575        477 KFLPHHRTGDSWCIYPTYDYTHCLCDS-IEHITHSL--CTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNV-NYTVVSK  552 (832)
Q Consensus       477 ~~~~h~r~gd~~~i~PtY~fA~~VdD~-l~gITHvl--Rg~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l-~gtkLSK  552 (832)
                            ++|.-  .|-|=|+|..++.. .++.+++|  .|.++...-++...+.++||+..+..  +.|+++ .-.+|||
T Consensus       341 ------sDG~~--~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~--~~Hv~fg~v~kMSk  410 (607)
T 1f7u_A          341 ------SDGTT--LYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKD--LQHVNFGMVQGMST  410 (607)
T ss_dssp             ------TTSCC--CHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGG--EEEECCCCEESCCG
T ss_pred             ------cCCCc--CCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcE--EEEecccccccccC
Confidence                  23321  13344556666555 35788888  89999877777778888999865543  457666 2237999


Q ss_pred             hHHH
Q psy17575        553 RKIA  556 (832)
Q Consensus       553 Rk~~  556 (832)
                      |.+.
T Consensus       411 R~G~  414 (607)
T 1f7u_A          411 RKGT  414 (607)
T ss_dssp             GGTC
T ss_pred             CCCC
Confidence            9864

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A

Probab=98.71  E-value=8.8e-09  Score=121.17  Aligned_cols=47  Identities=19%  Similarity=-0.009  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHcCCCcCcccccchh--HHHHHHHHHHHHHcCCcccc
Q psy17575        368 EKFFTGIKDMVQWLGYKPYQITHSSDY--FHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       368 ~e~~~~I~edL~WLGl~pd~~~~qSd~--~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ..+.+.+.++++.||+.+|.....|++  .+...+..++|.++|.+|.|
T Consensus       247 ~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~  295 (629)
T 2zue_A          247 EEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIP  295 (629)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEHHHHHHTTHHHHHHHHHHTSTTEECC
T ss_pred             HHHHHHHHHHHHHcCCccccccCcCccccchhHHHHHHHHHHCCCcccc
Confidence            356678899999999999876677776  34556777889999999965

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=98.65  E-value=2e-08  Score=115.60  Aligned_cols=94  Identities=18%  Similarity=0.067  Sum_probs=69.3

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc----------------ccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP----------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp----------------~r~~~e~~~~I~edL~WL  381 (832)
                      ++|==.|-|||.||||||++.++--.+||.  ..|.=++.+-+||.                ..-..+|.+.|.+++++|
T Consensus        12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l   91 (542)
T 3u1f_A           12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM   91 (542)
T ss_dssp             EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            444445899999999999999998888874  45666666677764                112357889999999999


Q ss_pred             CCCcCcccccc--hhHHHHHHHHHHHHHcCCccc
Q psy17575        382 GYKPYQITHSS--DYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd~~~~qS--d~~~~~ye~A~~Li~~G~AY~  413 (832)
                      |+.+|..+..+  .+.....+...+|.++|.+|.
T Consensus        92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~  125 (542)
T 3u1f_A           92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL  125 (542)
T ss_dssp             TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence            99888533333  344444556678999999986

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=98.64  E-value=9.4e-08  Score=114.16  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=68.4

Q ss_pred             eEEeeCCCCCCcCchHHHHH-HHHHHHHHHh--cCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKA-ININFGYAAA--HNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQW  380 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGhara-aL~n~l~Ar~--~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~W  380 (832)
                      ++|==+|.|||.+||||+++ .++-..+||.  ..|   .|+.=+|+.+.+             .-..++.+.+.+++++
T Consensus         5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~   84 (722)
T 1rqg_A            5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR   84 (722)
T ss_dssp             EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            45556799999999999998 7777666653  334   455556665433             2245788999999999


Q ss_pred             cCCCcCcccccch--hHHHHHHHHHHHHHcCCccc
Q psy17575        381 LGYKPYQITHSSD--YFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       381 LGl~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~  413 (832)
                      ||+.+|..+..++  |.....+...+|.++|.+|.
T Consensus        85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~  119 (722)
T 1rqg_A           85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK  119 (722)
T ss_dssp             HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence            9999886544443  55555566778999999985

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}

Probab=98.54  E-value=1.9e-07  Score=103.24  Aligned_cols=192  Identities=13%  Similarity=0.030  Sum_probs=127.5

Q ss_pred             cHHHHHHhhhh-cCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCc-c-c---ccHHHHHHH
Q psy17575        305 THDLLREHIKY-TGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNP-E-K---EEEKFFTGI  374 (832)
Q Consensus       305 ~~~~~~~hl~~-~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp-~-r---~~~e~~~~I  374 (832)
                      +.+.|++.|+. ..-.+.+-|.|  ||.||||| ..++.+|..-+..|..+++.|-|    |++ . +   ...++...+
T Consensus        22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~   98 (364)
T 2cya_A           22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV   98 (364)
T ss_dssp             THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence            36778888865 23457788976  59999999 89999999999999999999999    333 1 3   344666788


Q ss_pred             HHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCccc
Q psy17575        375 KDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLID  452 (832)
Q Consensus       375 ~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~  452 (832)
                      ..++.++|++|++  +..||+.... ..+...++    -+.|++|-.++.+....    ..|.                .
T Consensus        99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~~~----k~r~----------------~  153 (364)
T 2cya_A           99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVI----RVAKRASLARVRRALTI----MGRR----------------A  153 (364)
T ss_dssp             HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC--------------------------C
T ss_pred             HHHHHHhCCCccceEEEecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCchh----hhhh----------------c
Confidence            8999999999985  6889987643 23333333    35699999998864211    0000                0


Q ss_pred             CCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCC
Q psy17575        453 EGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI  532 (832)
Q Consensus       453 ~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~  532 (832)
                      .+.           +        +       +. ....||..+   +.|=.+.+.+|++.|.|-..+.....-+...+|.
T Consensus       154 ~~~-----------~--------i-------~~-g~~~YP~LQ---aaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~  203 (364)
T 2cya_A          154 EEA-----------E--------V-------DA-SKLIYPLMQ---VSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR  203 (364)
T ss_dssp             CGG-----------G--------S-------CT-HHHHHHHHH---HHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTC
T ss_pred             CCC-----------C--------c-------cc-hhhhhHHHH---HhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCC
Confidence            000           0        0       00 011244322   2222246899999999998888888888899998


Q ss_pred             CCCCccccccc-CCC-----------------CcccchhH
Q psy17575        533 YCPVQWEYGRL-NVN-----------------YTVVSKRK  554 (832)
Q Consensus       533 ~~P~~~ef~hL-~l~-----------------gtkLSKRk  554 (832)
                      ..|.......| .++                 |+||||+.
T Consensus       204 ~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~  243 (364)
T 2cya_A          204 KKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK  243 (364)
T ss_dssp             CCCEEEEECCCBCSSCC----------------CBCCSSS
T ss_pred             CCceeeccceeeCCCcccccccccccccccccccccCCCC
Confidence            88865443333 345                 68999995

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*

Probab=98.47  E-value=1.9e-07  Score=101.15  Aligned_cols=110  Identities=16%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC-C---C---cccccHHHHHHHHHHH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD-T---N---PEKEEEKFFTGIKDMV  378 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD-T---D---p~r~~~e~~~~I~edL  378 (832)
                      .+.|.+.|+...-.+.+.|.|  ||.||||| ..++.||...+..|..+++.|-| |   +   ...+..++...|..++
T Consensus        17 ~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~   93 (314)
T 2zp1_A           17 EEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVF   93 (314)
T ss_dssp             HHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence            566777787333357899998  58999999 99999999999999999999944 3   2   2245567788999999


Q ss_pred             HHcCCCcCcccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575        379 QWLGYKPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF  424 (832)
Q Consensus       379 ~WLGl~pd~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~  424 (832)
                      .++|++ ....+||+.+.. .++...|+    .+.|++|..++.+.
T Consensus        94 ~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~  133 (314)
T 2zp1_A           94 EAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRS  133 (314)
T ss_dssp             HHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHH
T ss_pred             HhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhcc
Confidence            999998 667779998643 23333333    45699999988864

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}

Probab=98.43  E-value=1.1e-06  Score=96.34  Aligned_cols=179  Identities=16%  Similarity=0.119  Sum_probs=113.0

Q ss_pred             EeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----C----CcccccHHHHHHHHHHHHHcCCCcC--ccccc
Q psy17575        322 TRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----T----NPEKEEEKFFTGIKDMVQWLGYKPY--QITHS  391 (832)
Q Consensus       322 tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T----Dp~r~~~e~~~~I~edL~WLGl~pd--~~~~q  391 (832)
                      ......|||.|||||...++.||...+..|..+++.|-|    |    ||+. ..+....+..++.++|++|+  .+..|
T Consensus        15 v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~if~q   93 (340)
T 2g36_A           15 ILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSVIFVQ   93 (340)
T ss_dssp             EEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred             EEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence            444455679999999998888999889999999999999    6    6664 55667777788999999998  57889


Q ss_pred             chhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCc
Q psy17575        392 SDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP  471 (832)
Q Consensus       392 Sd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~  471 (832)
                      |+..+ +.+.+.       .+.|+++-.++.+...                |.+.          .-|++-  .++    
T Consensus        94 S~~~~-~~el~~-------~l~~~~~v~~l~r~~~----------------~k~~----------~~r~~~--~~~----  133 (340)
T 2g36_A           94 SGVKE-HAELAL-------LFSMIVSVSRLERVPT----------------YKEI----------KSELNY--KDL----  133 (340)
T ss_dssp             GGCTH-HHHHHH-------HHHTTSCHHHHHTCHH----------------HHTC-------------------CC----
T ss_pred             CchHH-HHHHHH-------HHHccCCHHHHHHhHH----------------HHhH----------HHHhcc--CCC----
Confidence            99754 444332       3559999888874310                0000          000000  000    


Q ss_pred             eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCC--ccccccc
Q psy17575        472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPV--QWEYGRL  543 (832)
Q Consensus       472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~--~~ef~hL  543 (832)
                          +      ..|  ...||..+   +.|=.+.+.++|+.|.|-..+.....-|...++      +..|.  .-+...|
T Consensus       134 ----~------~~g--~f~YPvLQ---AaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l  198 (340)
T 2g36_A          134 ----S------TAG--FLIYPVLQ---AADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKL  198 (340)
T ss_dssp             ----C------SHH--HHTHHHHH---HHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCC
T ss_pred             ----C------ChH--HhhhHHHH---HhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhcccccc
Confidence                0      000  01144432   222224689999999999877766666777664      22342  1112233


Q ss_pred             -CCCCcccchhHHH
Q psy17575        544 -NVNYTVVSKRKIA  556 (832)
Q Consensus       544 -~l~gtkLSKRk~~  556 (832)
                       .++|+||||+..+
T Consensus       199 ~gldG~KMSKS~~n  212 (340)
T 2g36_A          199 PGTDGRKMSKSYGN  212 (340)
T ss_dssp             CCTTSSCCCGGGTC
T ss_pred             CCCCccccCCCCCC
Confidence             3579999999753

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A

Probab=98.26  E-value=1.4e-06  Score=95.11  Aligned_cols=176  Identities=15%  Similarity=0.124  Sum_probs=111.9

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCccc--ccHHHHHHHHHHHHHcCCCcC--ccccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNPEK--EEEKFFTGIKDMVQWLGYKPY--QITHS  391 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp~r--~~~e~~~~I~edL~WLGl~pd--~~~~q  391 (832)
                      +.+=|-  |||.|||||...++.||...+. |..+++.|-|    |+|..  +..+....+..++.++|++|+  .+.+|
T Consensus         4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q   80 (328)
T 1i6k_A            4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ   80 (328)
T ss_dssp             EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred             EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence            334444  5699999999999999987755 8999999999    85321  345667788899999999998  57889


Q ss_pred             chhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCCc
Q psy17575        392 SDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDP  471 (832)
Q Consensus       392 Sd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~  471 (832)
                      |++.+ +.+.+-.|       .|.++-.++.++.                .|.+.....  ++.       +        
T Consensus        81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~----------------~~k~~~~~~--~~~-------~--------  119 (328)
T 1i6k_A           81 SEVPA-HAQAAWML-------QCIVYIGELERMT----------------QFKEKSAGK--EAV-------S--------  119 (328)
T ss_dssp             GGCTH-HHHHHHHH-------HHHSCHHHHHTCH----------------HHHHHHTTC--SSC-------C--------
T ss_pred             Cchhh-hhHHHHHH-------hccccHHHHHHHH----------------HHHHHHhcc--CCC-------C--------
Confidence            99754 45544433       3788877776431                122221100  000       0        


Q ss_pred             eEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCccc---ccc
Q psy17575        472 VAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWE---YGR  542 (832)
Q Consensus       472 V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~e---f~h  542 (832)
                                  .|  ...||..+=   .|=.+.+.++|+.|.|-..+.....-|...+|      +..|...-   -..
T Consensus       120 ------------~g--~f~YPvLQa---aDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~  182 (328)
T 1i6k_A          120 ------------AG--LLTYPPLMA---ADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGAR  182 (328)
T ss_dssp             ------------HH--HHTHHHHHH---HHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSS
T ss_pred             ------------ch--hhccHHHHH---HHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeecccccc
Confidence                        00  011443332   22233689999999999887777777777766      23442111   122


Q ss_pred             c-CCCC--cccchhHHH
Q psy17575        543 L-NVNY--TVVSKRKIA  556 (832)
Q Consensus       543 L-~l~g--tkLSKRk~~  556 (832)
                      | .++|  +||||+..+
T Consensus       183 l~gl~G~~~KMSKS~~n  199 (328)
T 1i6k_A          183 IMSLVDPTKKMSKSDPN  199 (328)
T ss_dssp             CBCSSCTTSBCCTTCSC
T ss_pred             ccCCCCCccCCCCCCCC
Confidence            2 4678  899999865

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}

Probab=98.24  E-value=4.2e-07  Score=99.83  Aligned_cols=182  Identities=14%  Similarity=0.089  Sum_probs=113.4

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC-------CCcccccHHHHHHHHHHHHHcCCCcC--cccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD-------TNPEKEEEKFFTGIKDMVQWLGYKPY--QITH  390 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD-------TDp~r~~~e~~~~I~edL~WLGl~pd--~~~~  390 (832)
                      +.+=|-  |||.|||||...++.||...+. |..+++.|-|       .||+ +..+....+..++.++|++|+  .+.+
T Consensus         7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~   82 (348)
T 2yy5_A            7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL   82 (348)
T ss_dssp             EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred             EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence            445555  5599999999999999987776 8899999999       6775 445667778889999999998  5788


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCCCCC
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQD  470 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~~~D  470 (832)
                      ||+..+ +.+..-.|       .|.++..++.++..                |.+.. ++  .+     +  +..+  .|
T Consensus        83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~----------------~k~~~-~~--~~-----~--~~~~--~~  126 (348)
T 2yy5_A           83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ----------------FKAKK-AE--QT-----R--NPNG--TL  126 (348)
T ss_dssp             GGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH----------------HHTTC-----------------------
T ss_pred             CCcccc-hhHHHHHH-------HhhccHHHHhchHH----------------HHHHH-Hh--hc-----c--cccc--CC
Confidence            999865 44443333       48888888775411                00000 00  00     0  0000  00


Q ss_pred             ceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCccc---cc
Q psy17575        471 PVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQWE---YG  541 (832)
Q Consensus       471 ~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~~e---f~  541 (832)
                      .    +      ..|  ...||..+=|   |=.+.+.+||+.|.|-..+.....-+...++      +..|....   -.
T Consensus       127 ~----~------~~g--~~~YPvLQaa---Dil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~  191 (348)
T 2yy5_A          127 N----I------PTG--LLTYPALMAG---DILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTN  191 (348)
T ss_dssp             C----C------BTH--HHHHHHHHHH---HHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTT
T ss_pred             C----C------Chh--hhhhHHHHHH---HHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccc
Confidence            0    0      001  1125544432   2234689999999999887777677777764      33453222   12


Q ss_pred             cc-CCCC--cccchhHHH
Q psy17575        542 RL-NVNY--TVVSKRKIA  556 (832)
Q Consensus       542 hL-~l~g--tkLSKRk~~  556 (832)
                      +| .++|  +||||+..+
T Consensus       192 ~l~gL~g~~~KMSKS~~n  209 (348)
T 2yy5_A          192 RIMDLFDPTKKMSKSSKN  209 (348)
T ss_dssp             TCBCSSCTTSBCCSSCSC
T ss_pred             cccCCCCcchhcCCCCCC
Confidence            23 4567  899999865

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}

Probab=98.07  E-value=5.4e-06  Score=90.70  Aligned_cols=88  Identities=15%  Similarity=0.069  Sum_probs=67.1

Q ss_pred             CCCcCchHHHHHHHHHHHHHHhcC-CEEEEeccC----CC---ccc-ccHHHHHHHHHHHHHcCCCcC--cccccchhHH
Q psy17575        328 PNGILHIGHAKAININFGYAAAHN-GICFLRYDD----TN---PEK-EEEKFFTGIKDMVQWLGYKPY--QITHSSDYFH  396 (832)
Q Consensus       328 PtG~LHIGharaaL~n~l~Ar~~g-G~~iLRiDD----TD---p~r-~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~  396 (832)
                      |||.|||||...++.||..-+..| ..+++.|-|    |+   |.. ...+....+..++.++|++|+  .+..||+..+
T Consensus        10 PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~~   89 (337)
T 2el7_A           10 PSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPE   89 (337)
T ss_dssp             SCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGSTH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcchh
Confidence            569999999998889998877777 788999988    32   221 345667778889999999998  5789999764


Q ss_pred             HHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        397 QLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       397 ~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                       +.+.+.       .+.|+++-.+|.+
T Consensus        90 -~~el~~-------~l~~~~~~~~l~r  108 (337)
T 2el7_A           90 -HTELSW-------VFTTLTPLGDLTR  108 (337)
T ss_dssp             -HHHHHH-------HHHHTSBHHHHHT
T ss_pred             -hHHHHH-------HHHccCCHHHHHH
Confidence             444433       2669998888874

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*

Probab=98.04  E-value=4.2e-06  Score=92.02  Aligned_cols=180  Identities=16%  Similarity=0.085  Sum_probs=111.0

Q ss_pred             CceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcc------cccHHHHHHHHHHHHHcCCCcC--ccc
Q psy17575        318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPE------KEEEKFFTGIKDMVQWLGYKPY--QIT  389 (832)
Q Consensus       318 ~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~------r~~~e~~~~I~edL~WLGl~pd--~~~  389 (832)
                      -.+.+.|.|  ||.|||||...++.||...+.....+++.-|+|.-.      .+..+....|..++.++|++|+  .+.
T Consensus        23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~  100 (351)
T 1yi8_B           23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV  100 (351)
T ss_dssp             SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred             cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence            357889998  599999999988999976665555666666654221      1345666778889999999998  567


Q ss_pred             ccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHc--CcccCCCceEEEEecccCC
Q psy17575        390 HSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKN--GLIDEGEATLRMKITLEEG  467 (832)
Q Consensus       390 ~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~--g~~~~g~~~lR~K~~~~~~  467 (832)
                      .||+... +.+++       ..|.|+++-.+|.+.         -+       |.++..  |. .++.       +    
T Consensus       101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~---------~~-------~k~~~~~~~f-~~~~-------~----  144 (351)
T 1yi8_B          101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQN---------PT-------VKAEIAQKGY-GERV-------P----  144 (351)
T ss_dssp             EGGGCTH-HHHHH-------HHHHTTSBHHHHHTC---------HH-------HHHHHHHHTC-TTCC-------B----
T ss_pred             EcCchhh-HHHHH-------HHHhccCCHHHHHhh---------hH-------HHHHHhhcCC-CCCC-------c----
Confidence            8999764 33332       246699999988742         11       111111  10 0000       0    


Q ss_pred             CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcC------CCCCCc-c-c
Q psy17575        468 KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALD------IYCPVQ-W-E  539 (832)
Q Consensus       468 ~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~------~~~P~~-~-e  539 (832)
                                      .|  ...||..+   +.|=.+.+.++|+.|.|...+.....-|.+.++      +..|.. . +
T Consensus       145 ----------------~g--~f~YPvLQ---AaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~  203 (351)
T 1yi8_B          145 ----------------AG--FFVYPVSQ---AADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSR  203 (351)
T ss_dssp             ----------------HH--HHHHHHHH---HHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECS
T ss_pred             ----------------hH--hhhhHHHH---HhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeec
Confidence                            00  01133322   222223689999999999887777777776653      234421 1 1


Q ss_pred             cccc-CCCCc-ccchhHHH
Q psy17575        540 YGRL-NVNYT-VVSKRKIA  556 (832)
Q Consensus       540 f~hL-~l~gt-kLSKRk~~  556 (832)
                      ...| .++|+ ||||+..+
T Consensus       204 ~~~l~~ldG~~KMSKS~~n  222 (351)
T 1yi8_B          204 VPRLPGLDGQAKMSKSLGN  222 (351)
T ss_dssp             SCSCCCTTSSSCCCTTTTC
T ss_pred             CccccCCCCccccCCCCCC
Confidence            2232 45787 99999754

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=97.49  E-value=0.00017  Score=87.05  Aligned_cols=95  Identities=21%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCEEEEec---cCCCcc-----------------------------
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAA--AHNGICFLRY---DDTNPE-----------------------------  364 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~~iLRi---DDTDp~-----------------------------  364 (832)
                      -+++--+|.|||.|||||+++.++...+||  +..|.-++++   |++-..                             
T Consensus        36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~  115 (810)
T 1wkb_A           36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEI  115 (810)
T ss_dssp             EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHH
T ss_pred             EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHH
Confidence            377888999999999999999999999998  5678888885   333221                             


Q ss_pred             --------cccHHHHHHHHHHHHHcCCCcC--cccccch----hHHHHHHHHHHHHHcCCccc
Q psy17575        365 --------KEEEKFFTGIKDMVQWLGYKPY--QITHSSD----YFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       365 --------r~~~e~~~~I~edL~WLGl~pd--~~~~qSd----~~~~~ye~A~~Li~~G~AY~  413 (832)
                              .-...+.+.|.+++++||+..|  ..++.++    |.........+|.++|++|.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~  178 (810)
T 1wkb_A          116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK  178 (810)
T ss_dssp             HHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence                    1123455789999999997655  5544444    33333344568999999986

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=97.43  E-value=0.0002  Score=87.36  Aligned_cols=94  Identities=23%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPE-------------KEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~-------------r~~~e~~~~I~edL~WL  381 (832)
                      +++=-+|.|||.|||||+++.++-..+||.  ..|.-++.   +|+.+.+             .-..++.+.+.++++.|
T Consensus        36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L  115 (878)
T 2v0c_A           36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM  115 (878)
T ss_dssp             EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            444456999999999999999988777764  33544444   4554432             22457889999999999


Q ss_pred             CCCcC--cc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575        382 GYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      |+..|  ..  +..++|.........+|.++|++|.
T Consensus       116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~  151 (878)
T 2v0c_A          116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR  151 (878)
T ss_dssp             TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            98655  43  4445555555566778999999986

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=97.27  E-value=0.00039  Score=84.69  Aligned_cols=95  Identities=23%  Similarity=0.293  Sum_probs=66.2

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcc-------------cccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPE-------------KEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~-------------r~~~e~~~~I~edL~WL  381 (832)
                      +++==+|.|||.|||||+++.++--.+||.  ..|.-+++   +||...+             .-..++.+.|.++|+.|
T Consensus        56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L  135 (880)
T 4arc_A           56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML  135 (880)
T ss_dssp             EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            344446999999999999999998888874  45655555   4444322             12346788999999999


Q ss_pred             CCCcC--ccccc--chhHHHHHHHHHHHHHcCCcccc
Q psy17575        382 GYKPY--QITHS--SDYFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       382 Gl~pd--~~~~q--Sd~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      |+..|  ..+..  .+|.........+|.++|++|.-
T Consensus       136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~  172 (880)
T 4arc_A          136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKK  172 (880)
T ss_dssp             TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence            98765  44333  33444444556689999999974

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.0024  Score=71.20  Aligned_cols=191  Identities=15%  Similarity=0.194  Sum_probs=110.9

Q ss_pred             CcccccccHHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHH-HHHHHHHhcCCEEEEeccC-C----Cc---cccc
Q psy17575        298 GYVVTEQTHDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAIN-INFGYAAAHNGICFLRYDD-T----NP---EKEE  367 (832)
Q Consensus       298 ~~~~~~~~~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD-T----Dp---~r~~  367 (832)
                      |.+......+.+.+.++.. .-.+.+=|.|  ||.|||||...++ .+| +...+|..+++=|-| +    |+   ....
T Consensus        53 g~i~~~~d~~~l~~~~~~~~p~~i~sG~~P--TG~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i  129 (392)
T 3jxe_A           53 KFFFSHRDYDLILKDYEEGRGFFLYTGRGP--SGPMHIGHIIPFFATKW-LQEKFGVNLYIQITDDEKFLFKENLTFDDT  129 (392)
T ss_dssp             TSEEEEESHHHHHHHHHTTCCCEEEEEECC--SSCCBHHHHHHHHHHHH-HHHHHCCEEEEEECHHHHHHHCSSCCHHHH
T ss_pred             cCcccccCHHHHHHHHhcCCCeEEEeccCC--CCchhHHHHHHHHHHHH-HHHhcCCceEEEecchHHhhcCCCCCHHHH
Confidence            5555333334444445432 2245556665  5999999999885 788 455577765554444 2    22   1233


Q ss_pred             HHHHHHHHHHHHHcCCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHH
Q psy17575        368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEA  445 (832)
Q Consensus       368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~  445 (832)
                      .++...+..++..+|++|++  +..||+... |++.+..|-       |.+|-.++++..                    
T Consensus       130 ~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~--------------------  181 (392)
T 3jxe_A          130 KRWAYDNILDIIAVGFDPDKTFIFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVF--------------------  181 (392)
T ss_dssp             HHHHHHHHHHHHTTCCCTTSEEEEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHHHhCcCccceEEEECchhHH-HHHHHHHHH-------hhCCHHHHhhhh--------------------
Confidence            45556677777888999984  688999876 777776663       666666554321                    


Q ss_pred             HHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCC-C-CcceeeecccccccchhH
Q psy17575        446 MKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSI-E-HITHSLCTKEFQSRRSSY  523 (832)
Q Consensus       446 m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l-~-gITHvlRg~E~~~~~~~~  523 (832)
                         |. .++.                           ..|  ...||..+=|    |.+ . .-++|..|.|-..+-..-
T Consensus       182 ---~~-~~~~---------------------------~~g--~f~YP~LQaa----Dil~~~~a~~vpvG~DQ~~hl~l~  224 (392)
T 3jxe_A          182 ---GF-TEQS---------------------------KIG--MIFFPAIQIA----PTFFERKRCLIPAAIDQDPYWRLQ  224 (392)
T ss_dssp             ---CC-CTTS---------------------------BHH--HHHHHHHHHG----GGGSSSSCEEEEEEGGGHHHHHHH
T ss_pred             ---cc-CCCC---------------------------chH--HHHHHHHHHh----hHHhhcCCceeecccchHHHHHHH
Confidence               00 0000                           000  0114443322    222 2 257889999966554444


Q ss_pred             HHHHHhcCCCCCCccccccc-CCCC--cccchhHHH
Q psy17575        524 YWLCNALDIYCPVQWEYGRL-NVNY--TVVSKRKIA  556 (832)
Q Consensus       524 ~~L~~aL~~~~P~~~ef~hL-~l~g--tkLSKRk~~  556 (832)
                      .-+...+|...|.......| .++|  +||||+..+
T Consensus       225 Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~n  260 (392)
T 3jxe_A          225 RDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPE  260 (392)
T ss_dssp             HHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGG
T ss_pred             HHHHHHcCCCCCeeeecccccCCCCCccccccCCCC
Confidence            45667788777765443334 3567  599999854

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*

Probab=96.90  E-value=0.0043  Score=70.01  Aligned_cols=190  Identities=15%  Similarity=0.115  Sum_probs=105.6

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----c------ccH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----K------EEE  368 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r------~~~  368 (832)
                      .+.|.+.|+. +++++.=..=.|||. |||||.. ++.+|..-+..|..+++=|-|-     ||.     |      ...
T Consensus        25 ~~~L~~~L~~-~~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~  102 (432)
T 1h3f_A           25 EEELLAKLKE-GRPLTVKLGADPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETR  102 (432)
T ss_dssp             HHHHHHHHHT-CSCCEEEEEECTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC---------------------H
T ss_pred             HHHHHHHHhc-CCCcEEEEcccCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHH
Confidence            6678888852 344333333456785 9999999 7888887778888888877772     452     1      123


Q ss_pred             HHHHHHHHHHHHcCCC--cC--cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHH
Q psy17575        369 KFFTGIKDMVQWLGYK--PY--QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFE  444 (832)
Q Consensus       369 e~~~~I~edL~WLGl~--pd--~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~  444 (832)
                      +....++..+. .|++  |+  .+..||+.+...+  ...+++    +.|+.|..+|.+.        +        -|.
T Consensus       103 ~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~--~~~~l~----l~~~~tv~~ml~~--------~--------~~k  159 (432)
T 1h3f_A          103 ENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT--FKEVVR----LTSLMTVAQMLER--------E--------DFK  159 (432)
T ss_dssp             HHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB--HHHHHH----HHTTSBHHHHTTS--------H--------HHH
T ss_pred             HHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc--HHHHHH----HhCcCcHHHHHhh--------h--------hHH
Confidence            33444444442 5777  77  4688998754221  122333    2356666655421        0        111


Q ss_pred             -HHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhH
Q psy17575        445 -AMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSY  523 (832)
Q Consensus       445 -~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~  523 (832)
                       ++..+   ++                     +.      .+ .+ .||..   .+.|=...+.++++.|.|-..+-..-
T Consensus       160 ~r~~~~---~~---------------------is------~~-ef-~YPlL---QaaDil~l~~~l~~gG~DQ~~ni~l~  204 (432)
T 1h3f_A          160 KRYEAG---IP---------------------IS------LH-EL-LYPFA---QAYDSVAIRADVEMGGTDQRFNLLVG  204 (432)
T ss_dssp             HHHHTT---CC---------------------CB------GG-GG-THHHH---HHHHHHHHTCSEEEEEGGGHHHHHHH
T ss_pred             HHhhcC---CC---------------------CC------cc-cc-chhhH---HhhhhhhcCccEEEechHHHHHHHHH
Confidence             11100   00                     00      00 11 13321   12222234689999999988777666


Q ss_pred             HHHHHhcCCCCCCccccccc-CCCCc-ccchhHH
Q psy17575        524 YWLCNALDIYCPVQWEYGRL-NVNYT-VVSKRKI  555 (832)
Q Consensus       524 ~~L~~aL~~~~P~~~ef~hL-~l~gt-kLSKRk~  555 (832)
                      .-|...+|..+|.......| .++|+ ||||+..
T Consensus       205 rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~  238 (432)
T 1h3f_A          205 REVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLD  238 (432)
T ss_dssp             HHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGT
T ss_pred             HHHHHHhCCCCceEeecccccCCCCccccCcCCC
Confidence            77788888766644332333 35786 9999975

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=96.84  E-value=0.00048  Score=83.45  Aligned_cols=90  Identities=18%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             EeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCEEEEeccCCCcc---------------------------------cc
Q psy17575        322 TRFPPEPNGILHIGHAKAININFGYAA--AHNGICFLRYDDTNPE---------------------------------KE  366 (832)
Q Consensus       322 tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~~iLRiDDTDp~---------------------------------r~  366 (832)
                      +==+|.|||.|||||+++.++.-.+||  +..|.-++++--+|.-                                 .-
T Consensus        43 ~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~  122 (821)
T 1ile_A           43 YEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRES  122 (821)
T ss_dssp             CCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHH
T ss_pred             ecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHH
Confidence            334699999999999999999988887  3456555554444321                                 01


Q ss_pred             cHHHHHHHHHHHHHcC--CCcCcccccchhHHHHHH----HHHHHHHcCCccc
Q psy17575        367 EEKFFTGIKDMVQWLG--YKPYQITHSSDYFHQLYE----WAVKLIKKGLAYV  413 (832)
Q Consensus       367 ~~e~~~~I~edL~WLG--l~pd~~~~qSd~~~~~ye----~A~~Li~~G~AY~  413 (832)
                      ..++.+.+.+++++||  ++|+..+..++  ..|++    ...+|.++|++|.
T Consensus       123 ~~~~~~~~~~~~~~lg~~~dwd~~~~T~d--~~~~~~v~~~f~~L~~~Gliy~  173 (821)
T 1ile_A          123 VFTYEKEWEAFTERIAYWVDLEDAYATLE--PTYIESIWWSLKNLFDRGLLYR  173 (821)
T ss_dssp             TTTTHHHHTTHHHHTTCCCEEEEEEETTS--HHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHHhCCeEccCCCeEECC--HHHHHHHHHHHHHHHHcCCeee
Confidence            2256778999999999  78887655554  33443    3447999999986

>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=96.76  E-value=0.0092  Score=67.97  Aligned_cols=159  Identities=16%  Similarity=0.218  Sum_probs=116.7

Q ss_pred             HHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhccCC---------CccchHHHH
Q psy17575         65 MISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIKSQ---------SSIHLPLLV  133 (832)
Q Consensus        65 l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k~~---------~~~~r~~l~  133 (832)
                      ..+.|. ..||++.-|.-++.++.++.-+.+++.. +.    -++...+.|.+ |...++..         ...+...|+
T Consensus       306 ~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~-~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li  380 (482)
T 3al0_B          306 KAERFMREYGLPEYDAKVLTSSKELAEFFEECVKV-VN----RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLF  380 (482)
T ss_dssp             HHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHH-SC----CHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHh-cC----CHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHH
Confidence            445565 5999999999999999999988887553 22    26777777666 66555532         235788899


Q ss_pred             HHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHH-HHHHHHHHHHHHHHHHHHhcc--cccchhhhHH
Q psy17575        134 KYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSE-DIEETVSKVVEKHKAELLDKR--YRYNLGLVMQ  210 (832)
Q Consensus       134 ~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~E-qI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~  210 (832)
                      +.|.+|+|.+. .....+.-+-..  .-+.++.-++.|.. .+|.+ +|+++|+++|++|-+.+.+-|  -.-.+|.+||
T Consensus       381 ~li~~g~Is~~-~ak~vl~~~~~~--~~~p~~IIe~~gl~-qiSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lmG  456 (482)
T 3al0_B          381 KLMDEGKISIK-IAKEIFPEVFET--GKMPSQIVEEKGLT-QINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVG  456 (482)
T ss_dssp             HHHTTTSSCTT-HHHHSHHHHHHH--CCCHHHHHHHHTCC-CCCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHHH
T ss_pred             HHHHcCCccHH-HHHHHHHHHHhc--CCCHHHHHHHhCCc-cCCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHHH
Confidence            99999999884 445555554433  25788888888887 57777 999999999999988766522  2236999999


Q ss_pred             HHHhhCC-CCChhhhHHHHHHHH
Q psy17575        211 EVRTLLK-WADGKYIKSEVDVQV  232 (832)
Q Consensus       211 ~vR~~Lk-WAd~k~vK~~vD~~~  232 (832)
                      +|.+..+ =|||+.|.+.|.+.+
T Consensus       457 qVMk~tkGkADp~~V~~llke~L  479 (482)
T 3al0_B          457 YVMRETKGKANPELTNRIIQKLL  479 (482)
T ss_dssp             HHHHTTSSCSCHHHHHHHHHHHS
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHh
Confidence            9977443 699998888766543

>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B

Probab=96.73  E-value=0.017  Score=65.84  Aligned_cols=165  Identities=12%  Similarity=0.180  Sum_probs=118.1

Q ss_pred             HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHH-HHhhccC---------CCccchHHH
Q psy17575         64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYH-LASKIKS---------QSSIHLPLL  132 (832)
Q Consensus        64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~-lAtk~k~---------~~~~~r~~l  132 (832)
                      +..+.|. ..||++.-|.-++.++.++.-+.+++.. +    .-++..++.|.+ |...++.         -...+...|
T Consensus       298 ~k~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~-~----~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l  372 (483)
T 3ip4_B          298 ERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEH-G----ADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGM  372 (483)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTT-T----CCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHh-c----CCHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHH
Confidence            3445564 5999999999999998888888777542 1    135666666543 4433332         124678899


Q ss_pred             HHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHh--cccccchhhhHH
Q psy17575        133 VKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLD--KRYRYNLGLVMQ  210 (832)
Q Consensus       133 ~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~  210 (832)
                      ++.|.+|+|.+ .....-+..+-..+  -+.++.-++.|...+=.+++|+++|+++|++|.+.+..  .+-.-.+|-|+|
T Consensus       373 i~li~~g~Is~-~~ak~vl~~~~~~~--~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVG  449 (483)
T 3ip4_B          373 IKLIEDGTMSS-KIAKKVFPELAAKG--GNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVG  449 (483)
T ss_dssp             HHHHHHTSSCH-HHHHHHHHHHHHHC--CCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHcCCccH-HHHHHHHHHHHhcC--CCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHH
Confidence            99999999986 44555565554432  57889999999987666679999999999999987752  222335888888


Q ss_pred             HHHh-hCCCCChhhhHHHHHHHHHhhc
Q psy17575        211 EVRT-LLKWADGKYIKSEVDVQVLNLL  236 (832)
Q Consensus       211 ~vR~-~LkWAd~k~vK~~vD~~~l~lL  236 (832)
                      +|=+ .=-=|||+.|.+.+.+.+.+-|
T Consensus       450 QVMK~tkGKAdP~~VnelL~e~L~~~~  476 (483)
T 3ip4_B          450 QIMKASKGQANPQLVNQLLKQELDKRL  476 (483)
T ss_dssp             HHHHHTTSCBCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHhHH
Confidence            8854 3335999999998888776654

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=96.73  E-value=0.0025  Score=77.68  Aligned_cols=95  Identities=21%  Similarity=0.188  Sum_probs=65.9

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCc--------------------ccc-----------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNP--------------------EKE-----------  366 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp--------------------~r~-----------  366 (832)
                      +++==+|.|||.|||||+++.++--.+||.  ..|.=+|+.--+|.                    ..-           
T Consensus        37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~  116 (862)
T 1gax_A           37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ  116 (862)
T ss_dssp             EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred             EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence            445557999999999999999999888875  45666665544432                    100           


Q ss_pred             -cHHHHHHHHHHHHHcCCCcC--cccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        367 -EEKFFTGIKDMVQWLGYKPY--QITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       367 -~~e~~~~I~edL~WLGl~pd--~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                       ..+|.+.|.++++.||+..|  ..+...|  |.........+|.++|++|.-
T Consensus       117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg  169 (862)
T 1gax_A          117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRA  169 (862)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence             35678899999999997644  4333333  333333445589999999974

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*

Probab=96.69  E-value=0.0048  Score=69.61  Aligned_cols=104  Identities=15%  Similarity=0.223  Sum_probs=63.2

Q ss_pred             CCcccccccHHHHHHhhhhc-CCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccC----C-Ccc---c
Q psy17575        297 DGYVVTEQTHDLLREHIKYT-GGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDD----T-NPE---K  365 (832)
Q Consensus       297 ~~~~~~~~~~~~~~~hl~~~-~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD----T-Dp~---r  365 (832)
                      .|.+......+.|.+.++.. .-.+.+=|-  || |.|||||...++ ++| +.+.+|...++=|-|    + ||.   .
T Consensus        81 RG~i~~~~d~~~l~~~l~~g~~~~vy~G~d--PTag~LHLGh~v~~~~l~~-lQ~~~g~~~i~lI~D~ta~l~~~~~t~e  157 (432)
T 2ip1_A           81 KGLFFSERDFTKILDLYEQGKPFFLYTGRG--PSSDSMHLGHMIPFVFTKW-LQEVFDVPLVIELTDDEKFLFKHKLTIN  157 (432)
T ss_dssp             TTSEEEEESHHHHHHHHHHTCCCEEEEEEC--CCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHCTTCCHH
T ss_pred             CCCcccCCCHHHHHHHHhcCCCeEEEEeec--CCCCCccHHHHHHHHHHHH-HHHHcCCeEEEEEecccceeCCCCCCHH
Confidence            35544333344555556542 223445554  66 789999999977 687 444578776666666    3 222   2


Q ss_pred             ccHHHHHHHHHHHHHcCCCcC--cccccchhH-HHHHHHHH
Q psy17575        366 EEEKFFTGIKDMVQWLGYKPY--QITHSSDYF-HQLYEWAV  403 (832)
Q Consensus       366 ~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~-~~~ye~A~  403 (832)
                      ...+++..+..++-.+|++|.  .+..||+.. ..+++.+.
T Consensus       158 ~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~  198 (432)
T 2ip1_A          158 DVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVV  198 (432)
T ss_dssp             HHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEeCchhhhhhHHHHHH
Confidence            234555566777777899987  467899875 34555444

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.0012  Score=81.45  Aligned_cols=95  Identities=22%  Similarity=0.128  Sum_probs=63.4

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEec---cCCC--------------------------------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRY---DDTN--------------------------------  362 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRi---DDTD--------------------------------  362 (832)
                      +++==+|.|||.|||||+++.++--.+||.  ..|.-+|+.   |.+-                                
T Consensus        37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~  116 (967)
T 1wz2_A           37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL  116 (967)
T ss_dssp             BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred             EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence            445557999999999999999998888864  446555553   2221                                


Q ss_pred             -----cccccHHHHHHHHHHHHHcCCC--cCcccccch----hHHHHHHHHHHHHHcCCcccc
Q psy17575        363 -----PEKEEEKFFTGIKDMVQWLGYK--PYQITHSSD----YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       363 -----p~r~~~e~~~~I~edL~WLGl~--pd~~~~qSd----~~~~~ye~A~~Li~~G~AY~C  414 (832)
                           +..-...|.+.+.++++.||+.  |+..+...|    |.........+|.++|++|.-
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~  179 (967)
T 1wz2_A          117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKG  179 (967)
T ss_dssp             HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEe
Confidence                 1112335668899999999974  556554444    322233344579999999874

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=96.49  E-value=0.0024  Score=78.22  Aligned_cols=95  Identities=19%  Similarity=0.087  Sum_probs=63.8

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCC----------------c-----cc-------ccHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTN----------------P-----EK-------EEEK  369 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTD----------------p-----~r-------~~~e  369 (832)
                      +++==+|.|||.|||||+++.++--.+||.  ..|.-++..=-+|                |     +.       -..+
T Consensus        51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~  130 (917)
T 1ffy_A           51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE  130 (917)
T ss_dssp             CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred             eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence            444557999999999999999998888875  3454444332222                2     10       1346


Q ss_pred             HHHHHHHHHHHcCC--CcCcccccch--hHHHHHHHHHHHHHcCCcccc
Q psy17575        370 FFTGIKDMVQWLGY--KPYQITHSSD--YFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       370 ~~~~I~edL~WLGl--~pd~~~~qSd--~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      +.+.+.++++.||+  +|+..+...+  |.........+|.++|++|.-
T Consensus       131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~  179 (917)
T 1ffy_A          131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKG  179 (917)
T ss_dssp             HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEec
Confidence            78899999999998  4777655554  222222334579999999873

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}

Probab=95.98  E-value=0.0086  Score=66.34  Aligned_cols=111  Identities=11%  Similarity=0.084  Sum_probs=70.1

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----C-Ccc-cc---cHHHH-HHH
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----T-NPE-KE---EEKFF-TGI  374 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T-Dp~-r~---~~e~~-~~I  374 (832)
                      .+.|.++|+.. .-.+.+=|-|  ||.|||||-..++.+|..-+..|..+++=|-|    | ||. +.   ..+.. ..+
T Consensus        21 ~~~l~~~l~~~~~~~vy~G~~P--Tg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~   98 (375)
T 2cyc_A           21 VENLRHLFEIGAPLQHYIGFEI--SGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYF   98 (375)
T ss_dssp             HHHHHHHHHHTCCCBEEEEECC--CSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTH
T ss_pred             HHHHHHHHhcCCCcEEEeCCCC--CCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHH
Confidence            56777888652 3356666765  58999999556888887777788888777766    2 331 11   12233 334


Q ss_pred             H----HHHHHcCCCcC--cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        375 K----DMVQWLGYKPY--QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       375 ~----edL~WLGl~pd--~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      .    .++..+|++|+  .+..||+..... .+..-++.    +-|+++-.+|.+
T Consensus        99 ~~~~~~~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~----~~~~~~~~~m~~  148 (375)
T 2cyc_A           99 KVGMEKSIEVMGGDPKKVEFVLASEILEKG-DYWQTVID----ISKNVTLSRVMR  148 (375)
T ss_dssp             HHHHHHHHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHH----HHTTSBHHHHHH
T ss_pred             HHHHHHHHHHhCCCccceEEEEcchhhhhh-HHHHHHHH----HhceeEHHHHhc
Confidence            4    77888999998  468899866532 22222232    336667666664

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}

Probab=95.95  E-value=0.014  Score=65.72  Aligned_cols=193  Identities=13%  Similarity=0.084  Sum_probs=102.9

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC----C-Cccc----------ccHH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD----T-NPEK----------EEEK  369 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD----T-Dp~r----------~~~e  369 (832)
                      .+.|.+.|+...-.+.+=|  -|||. |||||+. ++.+|..-+..|-.+++=|-|    | ||.|          +..+
T Consensus        21 ~e~L~~~L~~~~~~iy~G~--dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~   97 (432)
T 2jan_A           21 LDTLAAEAQRGPMTVYAGF--DPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAE   97 (432)
T ss_dssp             HHHHHHHHHHSCCEEEEEE--CCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHH
T ss_pred             HHHHHHHHcCCCCEEEEee--CCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHH
Confidence            5667777763322344444  56795 9999955 777887777778877777655    2 4532          1223


Q ss_pred             HHHHHHHHH-HHc--CCCcCc--ccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHH
Q psy17575        370 FFTGIKDMV-QWL--GYKPYQ--ITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFE  444 (832)
Q Consensus       370 ~~~~I~edL-~WL--Gl~pd~--~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~  444 (832)
                      ....|.+.+ .||  |++|++  +..||+.+..+.  ...+++   -+-|+.|-.+|.+..                .|.
T Consensus        98 n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~--~l~~lr---~l~~~~tv~~m~~~~----------------~~k  156 (432)
T 2jan_A           98 WTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLS--AIEFLR---DIGKHFSVNVMLARD----------------TIR  156 (432)
T ss_dssp             HHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCB--HHHHHH---HTGGGCBHHHHHHSH----------------HHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEECchhcccCc--HHHHHH---HHhccCcHHHHhcch----------------HHh
Confidence            444444433 344  566763  678888654311  111221   133777777776421                111


Q ss_pred             HHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEee---ccceeeeeecCCCCcceeeecccccccch
Q psy17575        445 AMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYP---TYDYTHCLCDSIEHITHSLCTKEFQSRRS  521 (832)
Q Consensus       445 ~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P---tY~fA~~VdD~l~gITHvlRg~E~~~~~~  521 (832)
                      +...   .++-       ..                    + . ..||   +|||-+.-.+  .+.++++-|.|-..+-.
T Consensus       157 ~r~~---~~~i-------s~--------------------~-e-f~YPlLQaaDil~l~~~--~~~~i~~gG~DQ~~ni~  202 (432)
T 2jan_A          157 RRLA---GEGI-------SY--------------------T-E-FSYLLLQANDYVELHRR--HGCTLQIGGADQWGNII  202 (432)
T ss_dssp             HHTS---TTCC-------BH--------------------H-H-HHHHHHHHHHHHHHHHH--HCCCEEEECSTTHHHHH
T ss_pred             hhhc---CCCc-------ch--------------------H-H-HHHHHHHHHHHHHHhcc--CCCcEEeccHHHHHHHH
Confidence            1000   0000       00                    0 0 0122   2333211000  17889999999776655


Q ss_pred             hHHHHHHhcCCCCCCccccccc-CCCCcccchhHHH
Q psy17575        522 SYYWLCNALDIYCPVQWEYGRL-NVNYTVVSKRKIA  556 (832)
Q Consensus       522 ~~~~L~~aL~~~~P~~~ef~hL-~l~gtkLSKRk~~  556 (832)
                      .-.-|...++..+|+......| .++|+||||+..+
T Consensus       203 lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~n  238 (432)
T 2jan_A          203 AGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGG  238 (432)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSS
T ss_pred             HHHHHHHHhCCCCccccccccccCCCcCcCCCCCCC
Confidence            5555667777665544333333 4579999999754

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0

Probab=95.95  E-value=0.008  Score=67.09  Aligned_cols=97  Identities=18%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             CcccccccHHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHH-HHHHHHHHhcCCEEEEeccCC-----C--cccccH
Q psy17575        298 GYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAI-NINFGYAAAHNGICFLRYDDT-----N--PEKEEE  368 (832)
Q Consensus       298 ~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaa-L~n~l~Ar~~gG~~iLRiDDT-----D--p~r~~~  368 (832)
                      |.+......+.+.+.++. +.+++.=-.=.||| .|||||...+ +.+| +-+.+|..+++-|-|-     +  +..+..
T Consensus        58 G~~~~~~d~~~~l~~~~~-~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~  135 (395)
T 3i05_A           58 GIFFSHRDLNLLLDVYES-GQPFYLYTGRGPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVE  135 (395)
T ss_dssp             TSEEEEESHHHHHHHHHT-TCCEEEEEEECCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHH
T ss_pred             CCccccccHHHHHHHHhc-CCCeEEEEeecCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHH
Confidence            555432223333333432 34444444445789 6999999998 7788 5566666666665553     1  112234


Q ss_pred             HHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575        369 KFFTGIKDMVQWLGYKPYQ--ITHSSDYFH  396 (832)
Q Consensus       369 e~~~~I~edL~WLGl~pd~--~~~qSd~~~  396 (832)
                      ++...+..++..+|++|++  +..||+...
T Consensus       136 ~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~  165 (395)
T 3i05_A          136 AMTTENIKDIIAMGFDPELTFIFRDFDYMG  165 (395)
T ss_dssp             HHHHHHHHHHHTTTCCTTSEEEEEHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence            5556677777778999985  455666543

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}

Probab=95.84  E-value=0.017  Score=64.22  Aligned_cols=105  Identities=12%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             CCcccccccHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHH-HHHHHHHHhcCCEEEEeccCC--------Cccccc
Q psy17575        297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAI-NINFGYAAAHNGICFLRYDDT--------NPEKEE  367 (832)
Q Consensus       297 ~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaa-L~n~l~Ar~~gG~~iLRiDDT--------Dp~r~~  367 (832)
                      .|.+......+.+.+.++. +++++.=-.=.|||.|||||...+ +.+| +-+.+|..+++=|-|.        +++. .
T Consensus        61 RG~i~~~~d~~~ll~~~~~-~~~~~vysG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e~-i  137 (386)
T 3hzr_A           61 RGVFLAEKSLDKFLDDVEA-KKPTFIFIQKYPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATINE-A  137 (386)
T ss_dssp             TTSEEEESSHHHHHHHHHT-TCCEEEEEEECCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHHH-H
T ss_pred             CcCccccccHHHHHHHHhc-CCCeEEEeccCCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHHH-H
Confidence            3666533223333333432 444444344467899999999999 8899 5566677777777662        3332 3


Q ss_pred             HHHHHHHHHHHHHcCCCcCc--ccccchhHHHHHHHHHH
Q psy17575        368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWAVK  404 (832)
Q Consensus       368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A~~  404 (832)
                      .++......++-.+|++|++  +..||++...++..+.+
T Consensus       138 ~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~~~~~~~~~  176 (386)
T 3hzr_A          138 SKMSNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISL  176 (386)
T ss_dssp             HHHHHHHHHHHHHTCCCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCcceEEEeccHHHHHHHHHHHH
Confidence            34444566777778999984  57789877645554444

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*

Probab=95.65  E-value=0.01  Score=64.38  Aligned_cols=88  Identities=16%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             CCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-cccHHHHHHHHHHHHHcCCCcC--cccccchhHHHH
Q psy17575        327 EPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-KEEEKFFTGIKDMVQWLGYKPY--QITHSSDYFHQL  398 (832)
Q Consensus       327 sPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-r~~~e~~~~I~edL~WLGl~pd--~~~~qSd~~~~~  398 (832)
                      .|||.|||||...++.+|..-+. |..+++-|-|.     ||. .+..+....+..++..+|++|+  .+..||+..+ +
T Consensus        11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~   88 (322)
T 3tzl_A           11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V   88 (322)
T ss_dssp             CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred             CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence            46799999999988888866555 76666666553     332 1344566677788888999998  4788999764 4


Q ss_pred             HHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        399 YEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       399 ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      .+++..       +-|+++-.+|.+
T Consensus        89 ~el~~~-------l~~~~~~~~l~r  106 (322)
T 3tzl_A           89 MELYWI-------LSQFTPMGLLER  106 (322)
T ss_dssp             HHHHHH-------HGGGCBHHHHHS
T ss_pred             HHHHHH-------HhccCcHHHHHh
Confidence            454433       348998888874

>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*

Probab=95.43  E-value=0.021  Score=65.08  Aligned_cols=161  Identities=18%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhccC---------CCccchHHH
Q psy17575         64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIKS---------QSSIHLPLL  132 (832)
Q Consensus        64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k~---------~~~~~r~~l  132 (832)
                      +..+.|. ..||++.-|.-++.++.++.-+.+++... .    -++..++.|. .|...++.         -...+...|
T Consensus       301 ~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~-~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~l  375 (478)
T 3h0l_B          301 QRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHF-K----EPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAEL  375 (478)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHS-C----CHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHH
T ss_pred             HHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhc-C----CHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHH
Confidence            3445565 59999999999999999999998887542 1    2455555544 23322221         234678899


Q ss_pred             HHHHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhhhHH
Q psy17575        133 VKYIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGLVMQ  210 (832)
Q Consensus       133 ~~~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~  210 (832)
                      ++.|.+|+|.+ .....-+..+-..+  -+.++.-++.|....=.+++|+++|+++|++|.+.+..-|  -.-.+|.+||
T Consensus       376 i~li~~g~Is~-~~ak~vl~~~~~~~--~~p~eIVee~gL~qisD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lvG  452 (478)
T 3h0l_B          376 VKLIKEKVIST-KIGKEVIKEMVETG--KTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVG  452 (478)
T ss_dssp             HHHHHTTSSCH-HHHHHHHHHHHHHC--CCHHHHHHHHCC----------------------------------------
T ss_pred             HHHHHcCCccH-HHHHHHHHHHHhcC--CCHHHHHHHcCCccCCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHHH
Confidence            99999999986 44555565554433  4778888899988655569999999999999887655221  1224777787


Q ss_pred             HHHh-hCCCCChhhhHHHHHHHH
Q psy17575        211 EVRT-LLKWADGKYIKSEVDVQV  232 (832)
Q Consensus       211 ~vR~-~LkWAd~k~vK~~vD~~~  232 (832)
                      +|-+ .=-=|||+.|.+.|.+.+
T Consensus       453 qVMK~tkGkAdp~~VnelL~e~L  475 (478)
T 3h0l_B          453 QVMRETRGKANPQVVNKVIRELV  475 (478)
T ss_dssp             -----------------------
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHH
Confidence            7744 323599999888777654

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}

Probab=95.24  E-value=0.031  Score=63.27  Aligned_cols=118  Identities=15%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             CCcccccccHHHHHHhhhhcCCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccCC-----Cc---ccc
Q psy17575        297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDDT-----NP---EKE  366 (832)
Q Consensus       297 ~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDDT-----Dp---~r~  366 (832)
                      .|.+......+.|.+.++. +++++.=-.=.|| |.|||||...++ .+| +.+.+|..+++-|-|-     ++   ...
T Consensus        70 RG~i~~~~dl~~ll~~l~~-g~p~~vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~  147 (451)
T 3foc_A           70 RGLFYAHRDFEEFLSYYEK-GHPIYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAE  147 (451)
T ss_dssp             TTSEEEEESHHHHHHHHHT-TCCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHH
T ss_pred             CCCccccccHHHHHHHHhc-CCCeEEEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHH
Confidence            4666544444555555553 3344333334567 789999999998 888 5666677788887773     21   112


Q ss_pred             cHHHHHHHHHHHHHcCCCcCc--ccccchhHH--HHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        367 EEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH--QLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       367 ~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~--~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      ..++...+..++-.+|++|++  +..||+++.  .|++.+.+|-       |..|-.++.+
T Consensus       148 I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~  201 (451)
T 3foc_A          148 VDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD-------RMLPISQLRA  201 (451)
T ss_dssp             HHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH-------hhCCHHHHHh
Confidence            334555566666667999874  677888753  3555544333       4455555544

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0

Probab=95.16  E-value=0.039  Score=61.49  Aligned_cols=103  Identities=14%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             CCcccccccHHHHHHhhhhcC-CceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccCC-----Cc---cc
Q psy17575        297 DGYVVTEQTHDLLREHIKYTG-GKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDDT-----NP---EK  365 (832)
Q Consensus       297 ~~~~~~~~~~~~~~~hl~~~~-~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDDT-----Dp---~r  365 (832)
                      .|.+......+.+.+.++... -.+.+=|.  || |.|||||+..++ .+| +.+..|..+++-|-|-     .+   ..
T Consensus        53 RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~--PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e  129 (393)
T 3hv0_A           53 RNIFLSHRDFEKILDVYEKGELFYLYTGRG--PSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLE  129 (393)
T ss_dssp             TTSEEEEESHHHHHHHHHTTCCCEEEEEEC--CSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHH
T ss_pred             CCCccccCCHHHHHHHHhcCCCeEEEeCCC--CCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHH
Confidence            466654444455555555321 23444444  67 679999999999 888 5566666778878663     11   11


Q ss_pred             ccHHHHHHHHHHHHHcCCCcCc--ccccchhHHHHHHHH
Q psy17575        366 EEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFHQLYEWA  402 (832)
Q Consensus       366 ~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~~~ye~A  402 (832)
                      ...++...+..++..+|++|++  +..||+....+|..+
T Consensus       130 ~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~~~~~~~  168 (393)
T 3hv0_A          130 ETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDI  168 (393)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCcceEEEECCHHHHHHHHHH
Confidence            2344555677788889999984  567888776554433

>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5

Probab=95.11  E-value=0.012  Score=68.84  Aligned_cols=162  Identities=12%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             HHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccC------CCccchHHHHHHH
Q psy17575         64 SMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKS------QSSIHLPLLVKYI  136 (832)
Q Consensus        64 ~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~------~~~~~r~~l~~~I  136 (832)
                      +..+.|. ..||++.-|.-++.++.+ .-+.+++.. +.    -++...+.|...-..++.      -...+...|++.|
T Consensus       461 ~k~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~-~~----~pK~aanWL~~el~~L~~~i~~~~lt~e~la~LI~li  534 (633)
T 1zq1_C          461 AKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSM-GV----KPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLY  534 (633)
T ss_dssp             HHHHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHT-TC----STTHHHHHHHHTTCC----------------------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHh-cC----CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            4555566 599999999999998875 556555432 21    255555555443223331      2245677788888


Q ss_pred             HhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhC
Q psy17575        137 VSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLL  216 (832)
Q Consensus       137 ~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~L  216 (832)
                      .+|+|... .....++.+...+ ..+.++.-++.|.. .+|+++|+++|+++|++|.+.+.+.+ .-.+|.+||+|.+..
T Consensus       535 ~~gkIs~~-sAkevl~~~~~~~-~~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK~t  610 (633)
T 1zq1_C          535 LEGKIAKE-AFEEIFKELARNP-SKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQNIEVVKAKG-MGAMGLIMGRVMAKV  610 (633)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCcccHH-HHHHHHHHHhccC-CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHHHh
Confidence            98988762 3333333222221 24455666677763 57889999999999999887655532 236889999887644


Q ss_pred             C-CCChhhhHHHHHHHHHhh
Q psy17575        217 K-WADGKYIKSEVDVQVLNL  235 (832)
Q Consensus       217 k-WAd~k~vK~~vD~~~l~l  235 (832)
                      + =|||+.|.+.|.+.+...
T Consensus       611 kGKADpk~VnelLke~L~~~  630 (633)
T 1zq1_C          611 RGKADGKLVSQIVRRKLQEI  630 (633)
T ss_dssp             --------------------
T ss_pred             CCCCCHHHHHHHHHHHHhhh
Confidence            3 599999988887766443

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*

Probab=95.06  E-value=0.021  Score=63.14  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccccc----cHHHHHHHHHHHHHcCCCcCc--c
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPEKE----EEKFFTGIKDMVQWLGYKPYQ--I  388 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~r~----~~e~~~~I~edL~WLGl~pd~--~  388 (832)
                      .|.+=+.  |||.|||||...++.+|.+ .+.|..+++=|-|.    ++...    ...+......++-.+|++|.+  +
T Consensus        72 ~v~sG~~--PTG~lHLGhyv~~~~~~~l-q~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~i  148 (372)
T 3a04_A           72 AVLTGFM--PSGKFHFGHKLTVDQLIYL-QKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEF  148 (372)
T ss_dssp             EEEEEEC--CCSCCBHHHHHHHHHHHHH-HHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEE
T ss_pred             EEEeCcC--CCcHhHHHHHHHHHHHHHH-HhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcch
Confidence            3555565  4799999999976655544 45677888777663    32211    233444556677788999984  6


Q ss_pred             cccchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        389 THSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       389 ~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      ..||++...+++.+..+       .|..+..++++
T Consensus       149 f~qS~~~~~~~~l~~~~-------~~~~~~~~~~~  176 (372)
T 3a04_A          149 YFQTNRGTPYFRLIQLF-------SGKVTAAEMEA  176 (372)
T ss_dssp             EEGGGSCHHHHHHHHHH-------TTSSCHHHHHH
T ss_pred             hhhccchHHHHHHHHHH-------HhhhhHHHHhh
Confidence            88998777777765543       36666666654

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=94.86  E-value=0.11  Score=61.95  Aligned_cols=190  Identities=14%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Cccc----ccHHHHHHHHH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPEK----EEEKFFTGIKD  376 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~r----~~~e~~~~I~e  376 (832)
                      .+.|++.|+. +.+.+.=-.=.|||.|||||.-...+++..-+..|..+++=|-|.     ||..    ...+....+..
T Consensus        28 ~~eL~~~L~~-~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~  106 (690)
T 3p0j_A           28 ESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIE  106 (690)
T ss_dssp             HHHHHHHHHH-CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHH
Confidence            6677777764 333333333356789999993221223433345666766666553     3321    12234456777


Q ss_pred             HHHHcCCCcCc--ccccchhHHH----HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCc
Q psy17575        377 MVQWLGYKPYQ--ITHSSDYFHQ----LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGL  450 (832)
Q Consensus       377 dL~WLGl~pd~--~~~qSd~~~~----~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~  450 (832)
                      ++..+|++|++  +..||+++..    |+.....+       .+.+|-.+|.+....                    .|+
T Consensus       107 ~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i-------~~~~tv~~m~~~~~~--------------------~~r  159 (690)
T 3p0j_A          107 VWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI-------GRQNTIARIKKCCTI--------------------MGK  159 (690)
T ss_dssp             HHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH-------HHTSCHHHHHTTC-------------------------
T ss_pred             HHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH-------HhhCCHHHHHhhhhh--------------------hhh
Confidence            88889999984  6789986542    33333322       235565555532100                    000


Q ss_pred             ccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhc
Q psy17575        451 IDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNAL  530 (832)
Q Consensus       451 ~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL  530 (832)
                      ...                +     +.      .|  ...||.-+   +.|=.+.+.+++..|.|-..+-..-.-+...+
T Consensus       160 ~~~----------------~-----i~------~g--~f~YPlLQ---AaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~  207 (690)
T 3p0j_A          160 TEG----------------T-----LT------AA--QVLYPLMQ---CCDIFFLKADICQLGLDQRKVNMLAREYCDLI  207 (690)
T ss_dssp             --C----------------C-----CC------CS--CSSHHHHH---HHHHHHTTCSEECCBGGGHHHHHHHHHHHHHT
T ss_pred             ccC----------------C-----Cc------hh--hHhhHHHH---HHHHHhhCCCEEeccccHHHHHHHHHHHHHHh
Confidence            000                0     00      01  01144333   22222347889999999765544444566777


Q ss_pred             CCC-CCCccccccc-CC-CCc-ccchhHH
Q psy17575        531 DIY-CPVQWEYGRL-NV-NYT-VVSKRKI  555 (832)
Q Consensus       531 ~~~-~P~~~ef~hL-~l-~gt-kLSKRk~  555 (832)
                      |.. .|+......| .+ +|+ ||||+..
T Consensus       208 n~~~~p~~l~~~~l~gL~dG~~KMSKS~~  236 (690)
T 3p0j_A          208 GRKLKPVILSHHMLAGLKQGQAKMSKSDP  236 (690)
T ss_dssp             TCCCCCEEEEBCCCCCSSTTCSSCBTTBG
T ss_pred             CCCCCceEeecCeeecCCCCCcCCCCCCC
Confidence            764 5654444444 34 675 9999975

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}

Probab=94.39  E-value=0.11  Score=57.04  Aligned_cols=88  Identities=15%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc----cccHHHHHHHH
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE----KEEEKFFTGIK  375 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~----r~~~e~~~~I~  375 (832)
                      .+.|.+.|+.. .-.+.+=|-||  |.|||||...++.+|..-...|..+++=|-|.     ||.    ....+....+.
T Consensus        28 ~~~L~~~L~~~~~~~vy~G~~PT--g~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~  105 (348)
T 2j5b_A           28 LDRLKQLVDSGRIFTAYNGFEPS--GRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFI  105 (348)
T ss_dssp             HHHHHHHHHHTCCEEEEEEECCC--SSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEeccCCC--CCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHH
Confidence            56788888762 22355666555  89999996677788877777788888777662     431    23345667777


Q ss_pred             HHHHHcCCCcC--cccccchhH
Q psy17575        376 DMVQWLGYKPY--QITHSSDYF  395 (832)
Q Consensus       376 edL~WLGl~pd--~~~~qSd~~  395 (832)
                      +++..+|++|.  .+..||+.+
T Consensus       106 ~~~la~Gldp~k~~i~~qs~~~  127 (348)
T 2j5b_A          106 EVFKACGINLDGTRFIWASEFI  127 (348)
T ss_dssp             HHHHHTTCCGGGEEEEEHHHHH
T ss_pred             HHHHHhcCCccceEEEECCHhh
Confidence            78778899998  467888854

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}

Probab=93.98  E-value=0.082  Score=58.82  Aligned_cols=93  Identities=12%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITH  390 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~  390 (832)
                      |.+=|  .|||.|||||..-++.||..-+. |..+++=|-|.       ||+. ..+....+..++..+|++|++  +..
T Consensus        38 i~sG~--~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~-lr~~~~~~aa~~lA~GlDp~kt~if~  113 (388)
T 3prh_A           38 IFSGI--QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLE-LRKNIRNLAALYLAVGLDPEKATLFI  113 (388)
T ss_dssp             EEEEE--CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHH-HHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred             EEEee--CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHH-HHHHHHHHHHHHHHhCCChhHeEEEe
Confidence            44444  46799999999999998865443 66776666552       3322 334555677777789999984  678


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF  424 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~  424 (832)
                      ||+..+ +.+++-.       +.|..+-.++.++
T Consensus       114 qS~v~~-~~el~w~-------l~~~~~~~~L~R~  139 (388)
T 3prh_A          114 QSEVPA-HAQAGWM-------MQCVAYIGELERM  139 (388)
T ss_dssp             GGGSTH-HHHHHHH-------HHTTSCHHHHHTT
T ss_pred             cccccc-hHHHHHH-------HHhhccHHHHHhh
Confidence            999753 4454433       3478887777653

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*

Probab=93.72  E-value=0.28  Score=55.11  Aligned_cols=220  Identities=15%  Similarity=0.180  Sum_probs=116.2

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccC-C----Ccc-----c------ccH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDD-T----NPE-----K------EEE  368 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDD-T----Dp~-----r------~~~  368 (832)
                      .+.|.+.|+...-.+.+=|-  |||. |||||.. ++.+|..-+..|-++++=|-| |    ||.     |      +..
T Consensus        21 ~~~L~~~L~~~~~~iy~G~d--PTg~sLHlGh~v-~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~   97 (420)
T 1jil_A           21 EQGIEDLLNKEQVTLYCGAD--PTADSLHIGHLL-PFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD   97 (420)
T ss_dssp             HHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred             HHHHHHHHcCCCCEEEEeeC--CCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH
Confidence            56677888643333445554  6799 9999988 688887777777777776655 2    453     1      123


Q ss_pred             HHHHHHHHHHHHcCCCc---C--cccccchhHHH--HHHHHHHHHHcCCccccCCCHHHHhccCCCCCCCCCCChhHhHH
Q psy17575        369 KFFTGIKDMVQWLGYKP---Y--QITHSSDYFHQ--LYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSPWRERPVEENVK  441 (832)
Q Consensus       369 e~~~~I~edL~WLGl~p---d--~~~~qSd~~~~--~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~~~R~r~~ee~L~  441 (832)
                      +....|.+.+..+ ++|   +  .+..||+.+..  ++++   |..    +-|+.|-.+|.+...         ...   
T Consensus        98 ~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~---l~~----~~~~~tv~~m~~~~~---------~k~---  157 (420)
T 1jil_A           98 KNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF---LRD----YGKHVGVNYMLGKDS---------IQS---  157 (420)
T ss_dssp             HHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH---HHH----TGGGCCHHHHHTCGG---------GHH---
T ss_pred             HHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH---HHH----HhccccHHHHhcchh---------hhh---
Confidence            4556666655554 555   4  35677776542  2222   222    236667666664210         000   


Q ss_pred             HHHHHHcCcccCCCceEEEEecccCCCCCceEEEeeeCCCCCCCCceeEee---ccceeeeeecCCCCcceeeecccccc
Q psy17575        442 LFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYP---TYDYTHCLCDSIEHITHSLCTKEFQS  518 (832)
Q Consensus       442 ~f~~m~~g~~~~g~~~lR~K~~~~~~~~D~V~~Ri~~~~h~r~gd~~~i~P---tY~fA~~VdD~l~gITHvlRg~E~~~  518 (832)
                         ++     .++-       ..                    + .+ .||   +|||-+.-.  -.+.++++-|.|-..
T Consensus       158 ---r~-----~~~i-------s~--------------------~-ef-~YplLQaaD~l~l~~--~~~~~i~~gG~DQ~~  198 (420)
T 1jil_A          158 ---RL-----EHGI-------SY--------------------T-EF-TYTILQAIDFGHLNR--ELNCKIQVGGSDQWG  198 (420)
T ss_dssp             ---HH-----TTTC-------CH--------------------H-HH-HHHHHHHHHHHHHHH--HHCEEEEEEEGGGHH
T ss_pred             ---hc-----cCCc-------ch--------------------H-HH-HHHHHHHHHHHHHhc--cCCCcEEeccHHHHH
Confidence               00     0000       00                    0 00 022   233221100  016788888999766


Q ss_pred             cchhHHHHHHhc-CCCCCCccccccc-CCCCcccchhHHHHhhhcCccCCCCCc---chhhHHHHHHcCCCHHHHHHHHH
Q psy17575        519 RRSSYYWLCNAL-DIYCPVQWEYGRL-NVNYTVVSKRKIAKLIEENIVNDWDDP---RLFTLTALRRRGFPPEAINKFCA  593 (832)
Q Consensus       519 ~~~~~~~L~~aL-~~~~P~~~ef~hL-~l~gtkLSKRk~~~lv~~g~v~gwdDP---r~~tL~~lrrrG~~PeAI~nfl~  593 (832)
                      +-..=.-|...+ +..+|+......| .++|+||||+..      +.|  |=|+   -...+....++ .+-..+.+|+.
T Consensus       199 ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~------naI--~L~d~~tsp~~i~~ki~~-~~D~~v~~~l~  269 (420)
T 1jil_A          199 NITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSES------GAV--WLDAEKTSPYEFYQFWIN-QSDEDVIKFLK  269 (420)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSS------SBC--BSSTTTSCHHHHHHHHHT-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCC------CeE--ecCCCCCCHHHHHHHHhc-CCchhHHHHHH
Confidence            655555567777 6655544443333 457999999974      333  2222   12234443332 44445667766


Q ss_pred             HhC
Q psy17575        594 RMG  596 (832)
Q Consensus       594 ~lG  596 (832)
                      .+-
T Consensus       270 ~~t  272 (420)
T 1jil_A          270 YFT  272 (420)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            554

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}

Probab=93.16  E-value=0.11  Score=56.74  Aligned_cols=95  Identities=15%  Similarity=0.104  Sum_probs=60.7

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Ccc--cccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NPE--KEEEKFFTGIKDMVQWLGYKPYQ--ITH  390 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~--r~~~e~~~~I~edL~WLGl~pd~--~~~  390 (832)
                      .|.+=|-  |||.|||||...++-+|..-+. +..+++=|-|.    ++.  ....+....+..++..+|++|++  +..
T Consensus         8 ~v~sG~~--PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~   84 (341)
T 3sz3_A            8 IVLSGVQ--PSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFV   84 (341)
T ss_dssp             EEEEEEC--SSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred             EEEeCcC--CCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEe
Confidence            3555555  5699999999988888853333 35555555542    221  22345566677778889999984  688


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhcc
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGF  424 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~  424 (832)
                      ||+..+ ..+.+-.|       .|.++.-+++++
T Consensus        85 qS~v~~-~~el~~~l-------~~~~~~~~l~R~  110 (341)
T 3sz3_A           85 QSHVPE-HAQLGWVL-------NCYTQMGELSRM  110 (341)
T ss_dssp             GGGCTH-HHHHHHHH-------HTTSCHHHHHTC
T ss_pred             ccchhh-hHHHHHHH-------HhhccHHHHHHH
Confidence            998653 33433323       478887777753

>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5

Probab=92.98  E-value=0.02  Score=66.99  Aligned_cols=159  Identities=14%  Similarity=0.189  Sum_probs=28.1

Q ss_pred             HHHHHHHH-hCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHHHHHhhccC-------CCccchHHHHH
Q psy17575         63 DSMISAFL-SVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLYHLASKIKS-------QSSIHLPLLVK  134 (832)
Q Consensus        63 ~~l~~lF~-~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy~lAtk~k~-------~~~~~r~~l~~  134 (832)
                      ++..+.|. ..||++.-|.-++.++.+ .-+.+++.. +.    -+|...+.|......++.       -...+...|++
T Consensus       448 ~~k~~r~~~~ygls~~~A~~l~~~~~~-~~fe~~~~~-~~----~~K~aaNWL~~el~~Ln~~~i~i~~lt~e~la~LI~  521 (619)
T 2d6f_C          448 SEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEF-RV----DTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIK  521 (619)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC-------------CCHHHHHTTTTHHHHHTC------------------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHcCcHH-HHHHHHHHh-cC----CHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHH
Confidence            34556666 599999999999888774 555555432 11    244444443332233322       23456778889


Q ss_pred             HHHhCCCCCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHh
Q psy17575        135 YIVSKALDSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRT  214 (832)
Q Consensus       135 ~I~~gklkt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~  214 (832)
                      .|.+|++... ....-++-+.+.  .-+..+.-++.|.. .+|.++|+++|+++|++|.+.+.+.+ .-.+|.+||+|.+
T Consensus       522 li~~gkIs~e-sAkevl~~L~e~--e~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK  596 (619)
T 2d6f_C          522 LLEVGKISKD-ALRDIVACMADE--GLAAEDAARKLNLL-LLAEDEIESIIQEIVEGNLDMISERG-MGAMGPLMGQAMG  596 (619)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHcCchhHH-HHHHHHHHHHhc--CCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHH
Confidence            9998988762 333222222221  24556666666664 57889999999999999877655532 2368899998876


Q ss_pred             hCC-CCChhhhHHHHHHHH
Q psy17575        215 LLK-WADGKYIKSEVDVQV  232 (832)
Q Consensus       215 ~Lk-WAd~k~vK~~vD~~~  232 (832)
                      ..+ =|||+.|.+.|.+.+
T Consensus       597 ~tkGKADpk~VnelLke~L  615 (619)
T 2d6f_C          597 RLRGRADGKVVNRILREKI  615 (619)
T ss_dssp             -------------------
T ss_pred             HhcCCCCHHHHHHHHHHHH
Confidence            444 599998888776654

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}

Probab=92.83  E-value=0.14  Score=57.34  Aligned_cols=98  Identities=17%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             CCcccccccHHHHHHhhhhcCCceEEeeCCCCCC-cCchHHHHHH-HHHHHHHHhcCCEEEEeccCC-----Cc--cccc
Q psy17575        297 DGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPNG-ILHIGHAKAI-NINFGYAAAHNGICFLRYDDT-----NP--EKEE  367 (832)
Q Consensus       297 ~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPtG-~LHIGharaa-L~n~l~Ar~~gG~~iLRiDDT-----Dp--~r~~  367 (832)
                      .|.+......+.+.+.++. +++++.=..=.||| .|||||...+ +.+| +.+.+|..+++-|-|.     ++  ....
T Consensus        80 RG~i~~~~d~~~ll~~~~~-~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i  157 (406)
T 3tze_A           80 RGIVFAHRDFNLLLDEIAN-NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDA  157 (406)
T ss_dssp             TTSEEEEESHHHHHHHHHT-TCCEEEEEEECCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHH
T ss_pred             CCCeeccccHHHHHHHHhc-CCCeEEEEeeCCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHH
Confidence            3666543333333344432 34444433445788 7999999998 7888 6666677777766663     11  1123


Q ss_pred             HHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575        368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH  396 (832)
Q Consensus       368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~~  396 (832)
                      .++...+..++-.+|++|++  +..||+...
T Consensus       158 ~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~~  188 (406)
T 3tze_A          158 MAYGRENIKDIVTLGFDPKLTYIFSNVEASH  188 (406)
T ss_dssp             HHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG
T ss_pred             HHHHHHHHHHHHHcCCCccceEEEeccHhHH
Confidence            45556677777788999974  455665443

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}

Probab=92.04  E-value=0.48  Score=52.43  Aligned_cols=88  Identities=16%  Similarity=0.110  Sum_probs=53.7

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-cc---cHHHHHHHH
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-KE---EEKFFTGIK  375 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-r~---~~e~~~~I~  375 (832)
                      .+.|++.|+.. .-.+.+=|.  |||.|||||.--..++|..-...|..+++=|-|.     ||. +.   .......+.
T Consensus        44 ~~~L~~~L~~~~~~~iy~G~~--PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~  121 (373)
T 3vgj_A           44 PDELRVKLLLKRKLICYDGFE--PSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFI  121 (373)
T ss_dssp             HHHHHHHHHHCSSCEEEEEEC--CCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEeCCC--CCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHH
Confidence            67778888752 223555555  5689999993212223333345677766665552     331 21   234455667


Q ss_pred             HHHHHcCCCcCc--ccccchhH
Q psy17575        376 DMVQWLGYKPYQ--ITHSSDYF  395 (832)
Q Consensus       376 edL~WLGl~pd~--~~~qSd~~  395 (832)
                      .++..+|++|++  +.+||+..
T Consensus       122 ~~~~a~G~dp~k~~i~~~S~~~  143 (373)
T 3vgj_A          122 EVWKSCGMNMENVQFLWASEEI  143 (373)
T ss_dssp             HHHHHTTCCSTTEEEEEHHHHH
T ss_pred             HHHHHcCCChhheEEEeChhHH
Confidence            788889999984  67899876

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1

Probab=91.90  E-value=0.2  Score=54.96  Aligned_cols=92  Identities=17%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-------CcccccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-------NPEKEEEKFFTGIKDMVQWLGYKPYQ--ITH  390 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-------Dp~r~~~e~~~~I~edL~WLGl~pd~--~~~  390 (832)
                      +.+=|.  |||.|||||..-++-+|..- +.+..+++=|-|.       ||+ ...+....+..++..+|++|++  +..
T Consensus        18 i~sG~~--PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~if~   93 (346)
T 3n9i_A           18 VFSGAQ--PSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKSTIFV   93 (346)
T ss_dssp             EEEEEC--SCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSEEEE
T ss_pred             EEECcC--CCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceEEEe
Confidence            445554  56999999999888888432 3345666555542       332 2335556677777789999985  688


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      ||+..+ ..+.+--       +.|.++.-++.+
T Consensus        94 qS~v~~-~~el~~~-------l~~~~~~~~l~R  118 (346)
T 3n9i_A           94 QSHVPE-HSQLSWA-------LNCYTYFGELSR  118 (346)
T ss_dssp             GGGCTH-HHHHHHH-------HHTTSBHHHHHT
T ss_pred             cccccc-chHHHHH-------HHHHhhHHHHHH
Confidence            998654 3333322       347777777764

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A

Probab=91.25  E-value=0.34  Score=55.25  Aligned_cols=100  Identities=11%  Similarity=0.091  Sum_probs=60.0

Q ss_pred             ccCCcccccccHHHHHHhhhhcCCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccC-C------Cccc
Q psy17575        295 KSDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDD-T------NPEK  365 (832)
Q Consensus       295 ~~~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD-T------Dp~r  365 (832)
                      ...|.+......+.+.+.++. +.+++.=-.=.|| |.|||||...++ .+| +-+.+|...++=|-| |      -...
T Consensus       132 ~~RG~i~~~~d~~~l~~~l~~-~~~~~vy~G~dPTag~LHLGh~v~~~~~~~-lQ~~~g~~~iilI~D~~a~igd~lt~e  209 (477)
T 1r6t_A          132 LRRGIFFSHRDMNQVLDAYEN-KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLD  209 (477)
T ss_dssp             HHTTSEEEEESHHHHHHHHHT-TCCEEEEEEECCCTTCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHH
T ss_pred             HhCCCccccCCHHHHHHHHhc-CCCcEEEEcccCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHH
Confidence            344776644444445555653 3333332333467 789999999988 677 444477765554444 2      1122


Q ss_pred             ccHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575        366 EEEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH  396 (832)
Q Consensus       366 ~~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~  396 (832)
                      ...++...++.++-.+|++|.+  +..||++..
T Consensus       210 ~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~  242 (477)
T 1r6t_A          210 QAYGDAVENAKDIIACGFDINKTFIFSDLDYMG  242 (477)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEechhhhc
Confidence            3445556667777778999984  678888764

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=90.87  E-value=0.044  Score=66.31  Aligned_cols=156  Identities=15%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             HHHHhCCCCchhhHHhhcCHhHHHHHHHHHHHhcccCCCCcchhhhHHH-HHHhhcc----CCCccchHHHHHHHHhCCC
Q psy17575         67 SAFLSVGLNEKKAKETLKNETLSTYLKQAIEEASKISPHSLQDCGSLLY-HLASKIK----SQSSIHLPLLVKYIVSKAL  141 (832)
Q Consensus        67 ~lF~~iGL~e~kAketlKN~kls~~L~~iI~ea~~~~~~~dk~~g~LLy-~lAtk~k----~~~~~~r~~l~~~I~~gkl  141 (832)
                      +.|...||++.-|.-++.++.++.-+.++..  +.    -++...+.|. .|...++    +-...+...|++.|.+|+|
T Consensus       686 ~R~~eyGLs~~dA~vL~~~~~ladyFE~v~~--~~----~pk~aANWl~~eL~~~Ln~~~~~itp~~LaeLi~LI~~g~I  759 (851)
T 2hz7_A          686 TRLLGLGASEGDARTIARDPALLAFVGGAAP--GD----TFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQL  759 (851)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHcCCCHHHHHHHHCCHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCc
Confidence            3367899999999999999999888877732  21    2445554443 3344443    2345788899999999999


Q ss_pred             CCHHhHHHHHHHHHhCCCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcc--cccchhhhHHHHHh-hCCC
Q psy17575        142 DSTLRVDAALEYVLSHVNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKR--YRYNLGLVMQEVRT-LLKW  218 (832)
Q Consensus       142 kt~~Ql~aAlkyl~~~~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vR~-~LkW  218 (832)
                      .+. .....++-+-+.  .-+.++.-++.|...+-.+++|+++|.++|++|.+.+.+-|  -.-.+|-|+|+|=+ .===
T Consensus       760 S~k-~AK~Vl~~m~~~--~~~p~eIVee~GL~qISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVMK~tkGK  836 (851)
T 2hz7_A          760 SAR-IAREALARAAAS--GDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGK  836 (851)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHH-HHHHHHHHHHhc--CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHHHHhCCC
Confidence            874 455556555433  24677788888887544455899999999999988776521  11235666666633 2224


Q ss_pred             CChhhhHHHHHHH
Q psy17575        219 ADGKYIKSEVDVQ  231 (832)
Q Consensus       219 Ad~k~vK~~vD~~  231 (832)
                      |||+.|.+.|.+.
T Consensus       837 AnP~~VnelL~ek  849 (851)
T 2hz7_A          837 ADPQALAAALKDA  849 (851)
T ss_dssp             -------------
T ss_pred             CCHHHHHHHHHHH
Confidence            8888887776553

>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1

Probab=90.57  E-value=0.86  Score=44.00  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=41.2

Q ss_pred             EeCHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHhhCC-CCChhhhHHHHHHH
Q psy17575        175 IVTSEDIEETVSKVVEKHKAELLDKRYRYNLGLVMQEVRTLLK-WADGKYIKSEVDVQ  231 (832)
Q Consensus       175 ~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vR~~Lk-WAd~k~vK~~vD~~  231 (832)
                      .+|+++|+++|.++|+++.+    .+ .-.+|.+||.|.+.++ =|||+.|...|.+.
T Consensus        94 qlsd~el~~iV~evi~~~~~----~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~  146 (148)
T 1ng6_A           94 QLSEEELRTIVNETIAEVGA----SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQ  146 (148)
T ss_dssp             CCCHHHHHHHHHHHHHHTTC----CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcc----cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            68999999999999999765    23 2379999999977443 49999988877653

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A

Probab=89.43  E-value=0.66  Score=52.38  Aligned_cols=99  Identities=11%  Similarity=0.112  Sum_probs=59.5

Q ss_pred             cCCcccccccHHHHHHhhhhcCCceEEeeCCCCC-CcCchHHHHHHH-HHHHHHHhcCCEEEEeccC-C----C--cccc
Q psy17575        296 SDGYVVTEQTHDLLREHIKYTGGKVRTRFPPEPN-GILHIGHAKAIN-INFGYAAAHNGICFLRYDD-T----N--PEKE  366 (832)
Q Consensus       296 ~~~~~~~~~~~~~~~~hl~~~~~~v~tRFaPsPt-G~LHIGharaaL-~n~l~Ar~~gG~~iLRiDD-T----D--p~r~  366 (832)
                      ..|.+......+.+.+.++. +.+++.=-.=.|| |.|||||...++ .+| +-+.+|...++=|-| |    |  ....
T Consensus        86 ~RG~i~~~~d~~~l~~~l~~-~~~~~vy~G~dPTag~LHLGh~v~~~~~~~-lQ~~~G~~~iilIgD~ta~igd~lt~e~  163 (437)
T 1r6u_A           86 RRGIFFSHRDMNQVLDAYEN-KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW-LQDVFNVPLVIQMTDDEKYLWKDLTLDQ  163 (437)
T ss_dssp             HHTSEEEEESHHHHHHHHTT-TCCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHH
T ss_pred             hCCCccCCCCHHHHHHHHhc-CCCcEEEEcccCCCCCccHHHHHHHHHHHH-HHHHhCCcEEEEEecceeeecCCCCHHH
Confidence            34776644444445555653 3333332333467 789999999987 676 444477766555544 2    1  1223


Q ss_pred             cHHHHHHHHHHHHHcCCCcCc--ccccchhHH
Q psy17575        367 EEKFFTGIKDMVQWLGYKPYQ--ITHSSDYFH  396 (832)
Q Consensus       367 ~~e~~~~I~edL~WLGl~pd~--~~~qSd~~~  396 (832)
                      ..++...+..++-.+|++|.+  +..||+...
T Consensus       164 i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~  195 (437)
T 1r6u_A          164 AYGDAVENAKDIIACGFDINKTFIFSDLDYMG  195 (437)
T ss_dssp             HHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGG
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEEechhhhh
Confidence            445555667777778999884  678888764

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*

Probab=88.29  E-value=0.3  Score=52.86  Aligned_cols=87  Identities=15%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccc-----cc------cH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT-----NPE-----KE------EE  368 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~-----r~------~~  368 (832)
                      .+.|.+.|+...-.+.+=|-  |||. |||||.. ++.+|..-+..|..+++=|=|.     ||.     |.      ..
T Consensus        22 ~~~l~~~l~~~~~~vy~G~~--PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~   98 (322)
T 2yxn_A           22 EEALAERLAQGPIALVCGFD--PTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQ   98 (322)
T ss_dssp             HHHHHHHHHHSCCEEEEEEC--CSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred             HHHHHHHHcCCCCEEEEeec--CCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHH
Confidence            56677777733334555555  5699 9999988 7888887777788877777662     332     22      22


Q ss_pred             HHHHHHHHHHHH---cCCCcCc--ccccchhH
Q psy17575        369 KFFTGIKDMVQW---LGYKPYQ--ITHSSDYF  395 (832)
Q Consensus       369 e~~~~I~edL~W---LGl~pd~--~~~qSd~~  395 (832)
                      +..+.|.+.+..   +|++|++  +..||+..
T Consensus        99 ~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~  130 (322)
T 2yxn_A           99 EWVDKIRKQVAPFLDFDCGENSAIAANNYDWF  130 (322)
T ss_dssp             HHHHHHHHHHGGGSCSSSGGGCCEEEETHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccceEEEecchhh
Confidence            333333444332   3777764  56777643

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*

Probab=86.92  E-value=1.4  Score=52.50  Aligned_cols=86  Identities=10%  Similarity=0.021  Sum_probs=57.7

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHH--HHHHHHhcCCEEEEeccCC-----Ccc-c---ccHHHHHHHHHHHHHcCCCcC-c
Q psy17575        320 VRTRFPPEPNGILHIGHAKAINI--NFGYAAAHNGICFLRYDDT-----NPE-K---EEEKFFTGIKDMVQWLGYKPY-Q  387 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~--n~l~Ar~~gG~~iLRiDDT-----Dp~-r---~~~e~~~~I~edL~WLGl~pd-~  387 (832)
                      .-+=|-| |||-|||||+..++.  +-..--..|+..++=|-|-     |+. .   ...++......++..||+++. +
T Consensus       383 l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~  461 (690)
T 3p0j_A          383 HACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVK  461 (690)
T ss_dssp             EEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred             ceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeE
Confidence            3345889 999999999998876  4333334588888888775     331 1   223455566778889999864 5


Q ss_pred             ccccchhHHH----HHHHHHHHH
Q psy17575        388 ITHSSDYFHQ----LYEWAVKLI  406 (832)
Q Consensus       388 ~~~qSd~~~~----~ye~A~~Li  406 (832)
                      +.++|+.+..    |+..+.+|-
T Consensus       462 fv~~S~~~~~~~~~~~~~vi~la  484 (690)
T 3p0j_A          462 IVTENEVILGNCDDFWVSVIGIA  484 (690)
T ss_dssp             EEEHHHHHHHTHHHHHHHHHHHH
T ss_pred             EEECCchhccchhhHHHHHHHHH
Confidence            7888985543    555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	832
d1gtra2	331	c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (Gln	7e-79
d1j09a2	305	c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS	2e-57
d1nzja_	286	c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB	4e-49
d1gtra1	209	b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),	4e-40
d1irxa2	317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	0.003

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

 Score =  255 bits (653), Expect = 7e-79
 Identities = 152/313 (48%), Positives = 207/313 (66%), Gaps = 11/313 (3%)

Query: 318 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDM 377
             V TRFPPEPNG LHIGHAK+I +NFG A  + G C LR+DDTNP KE+ ++   IK+ 
Sbjct: 18  TTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKND 77

Query: 378 VQWLGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG------FNPLPSP 430
           V+WLG+     + +SSDYF QL+ +A++LI KGLAYV     ++++            SP
Sbjct: 78  VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSP 137

Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGK---QDPVAYRIKFLPHHRTGDS 487
           +R+R VEEN+ LFE M+ G  +EG+A LR KI +       +DPV YRIKF  HH+TG+ 
Sbjct: 138 YRDRSVEENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNK 197

Query: 488 WCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDI-YCPVQWEYGRLNVN 546
           WCIYP YD+THC+ D++E ITHSLCT EFQ  R  Y W+ + + I   P Q+E+ RLN+ 
Sbjct: 198 WCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLE 257

Query: 547 YTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSP 606
           YTV+SKRK+  L+ +  V  WDDPR+ T++ LRRRG+   +I +FC R+GVT     +  
Sbjct: 258 YTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEM 317

Query: 607 NMLEAVVREVLND 619
             LE+ +RE LN+
Sbjct: 318 ASLESCIREDLNE 330

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  197 bits (501), Expect = 2e-57
 Identities = 59/309 (19%), Positives = 104/309 (33%), Gaps = 36/309 (11%)

Query: 320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQ 379
           V TR  P P G  H+G A     N+ +A  + G   +R +DT+  +        I   ++
Sbjct: 2   VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALK 61

Query: 380 WLGYK---------PYQITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPSP 430
           WLG           P+     S+      ++A +L+K+G AY   +  +E++        
Sbjct: 62  WLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGG 121

Query: 431 WRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQ---DPVAYRIKFLPH---HRT 484
           +  R       +           GE  +        G     D +   + +         
Sbjct: 122 YDGRA----RNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVV 177

Query: 485 GDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRL- 543
                 YPTY   + + D +  +T  +  +E+      +  L  A     P  +    L 
Sbjct: 178 LLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPLLR 237

Query: 544 NVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAV 603
           N + T +SKRK                   +L   +  GF PEA+  +   MG +     
Sbjct: 238 NPDKTKISKRK----------------SHTSLDWYKAEGFLPEALRNYLCLMGFSMPDGR 281

Query: 604 VSPNMLEAV 612
               + E +
Sbjct: 282 EIFTLEEFI 290

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Length = 286

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

 Score =  173 bits (438), Expect = 4e-49
 Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 21/277 (7%)

Query: 319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMV 378
           +   RF P P+G LH G   A   ++  A A  G   +R +D +P +E       I   +
Sbjct: 2   QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQL 61

Query: 379 QWLGY-KPYQITHSSDYFHQLYEWAVKLIKKGLAYV--CHQKSDEMKGFNPLPSPWRERP 435
           +  G      +   S       E    L ++GL+Y   C +   +  G            
Sbjct: 62  EHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHH 121

Query: 436 VEENVKLFEAMKNGLIDEGEATLRMKITLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYD 495
             +N  +    ++                 +  +  +    K                Y+
Sbjct: 122 GPDNAAVRIRQQH-----------PVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYN 170

Query: 496 YTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYG-RLNVNYTVVSKRK 554
               + D  + +T  +   +          L        P        LN     +SK+ 
Sbjct: 171 LAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQN 230

Query: 555 IAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKF 591
            A  +         DPR   + AL+  G   EA  + 
Sbjct: 231 HAPALP------KGDPRPVLIAALQFLGQQAEAHWQD 261

>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]} Length = 209

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
domain: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
species: Escherichia coli [TaxId: 562]

 Score =  144 bits (365), Expect = 4e-40
 Identities = 73/214 (34%), Positives = 102/214 (47%), Gaps = 13/214 (6%)

Query: 621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQ 680
           APR M VIDP+ L I N+         T+P+ PN    GS  + F   I+I+++DF+   
Sbjct: 1   APRAMAVIDPVKLVIENYQ--GEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEA 58

Query: 681 EKGYRRLAPGQGVGLRYAG--LVLEVDKVNTKCNGAITSI---DVKATPVDVDNKPKAFI 735
            K Y+RL  G+ V LR A       V+K        I      D  +       K K  I
Sbjct: 59  NKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVI 118

Query: 736 HWVA--RPISIEVRLYSTLFLHKNPEDTYQVPEGYLSDINPDSLKVSIGYADSGFVGVKP 793
           HWV+    + +E+RLY  LF   NP       + +LS INP+SL +  G+A+        
Sbjct: 119 HWVSAAHALPVEIRLYDRLFSVPNP----GAADDFLSVINPESLVIKQGFAEPSLKDAVA 174

Query: 794 YDRFQFERVGFFTVDRDSNINHKPVVNLTVSLKE 827
              FQFER G+F +D   +   KPV N TV L++
Sbjct: 175 GKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRD 208

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 26/280 (9%), Positives = 60/280 (21%), Gaps = 30/280 (10%)

Query: 303 EQTHDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYA----AAHNGICFLRY 358
                ++RE  +    K        P+G +H+G+ + +   +            +  +  
Sbjct: 5   YIADKIIRERGE--KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHM 62

Query: 359 DDTN----------PEKEEEKFFTGIKDMVQWLGYKPYQITHSSDYFHQLYEWAVKLIKK 408
            D            P++ ++     I ++    G       H    F +  E     +  
Sbjct: 63  WDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDL 122

Query: 409 GLAYVCHQKSDEMKGFNPLPSPWRERPVEENVKLFEA------MKNGLIDEGEATLRMKI 462
             A   +++ +  +          +     N     A                   R + 
Sbjct: 123 LYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREA 182

Query: 463 TLEEGKQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHC------LCDSIEHITHSLCTKEF 516
            + E              H    D         +                          
Sbjct: 183 EIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAG 242

Query: 517 QSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVV--SKRK 554
            S  +    +        P+   Y  + +       S  K
Sbjct: 243 SSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSK 282

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	832
d1gtra2	331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	100.0
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	100.0
d1nzja_	286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	100.0
d1gtra1	209	Gln-tRNA synthetase (GlnRS), C-terminal (anticodon	100.0
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	99.38
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.15
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.11
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	98.87
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	98.67
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	98.52
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	98.43
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	98.26
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	97.86
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	97.25
d1i6la_	326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	94.06
d1j1ua_	306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	93.57
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	92.45
d1n3la_	339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	92.32
d1ng6a_	148	Hypothetical protein YqeY {Bacillus subtilis [TaxI	90.45
d1r6ta2	386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	90.35

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutaminyl-tRNA synthetase (GlnRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-81  Score=677.30  Aligned_cols=314  Identities=48%  Similarity=0.893  Sum_probs=293.4

Q ss_pred             HHHHHHhhhhc-CCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCC
Q psy17575        306 HDLLREHIKYT-GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYK  384 (832)
Q Consensus       306 ~~~~~~hl~~~-~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~  384 (832)
                      .++|.++|+.. +++|||||||||||+||||||||||+||++||++||+|+|||||||++|++++|+++|+++|+||||.
T Consensus         5 ~~~~~~~l~~~~~~~v~tRFAPSPTG~LHiG~~rtal~n~l~Ak~~~G~fiLRIEDtD~~R~~~~~~~~I~~dL~WLGl~   84 (331)
T d1gtra2           5 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH   84 (331)
T ss_dssp             HHHHHHHHHHTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCcccchHHHHHHHHHHHHhcc
Confidence            67899999975 56899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC------CCCCCCCCCChhHhHHHHHHHHcCcccCCCce
Q psy17575        385 PY-QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN------PLPSPWRERPVEENVKLFEAMKNGLIDEGEAT  457 (832)
Q Consensus       385 pd-~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~------~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~  457 (832)
                      || .+.+||+|++.|++++.+|+++|+||+|+||+||+++.+      +.+++||++...+++..++.|..+....+..+
T Consensus        85 wD~~~~~QS~r~~~Y~~~~~~L~~~G~aY~C~cs~eel~~~r~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (331)
T d1gtra2          85 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC  164 (331)
T ss_dssp             CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHTCCSSSCCCCCTTTTCCHHHHHHHHHHHHHTCSCTTSCE
T ss_pred             ccccceecchHHHHHHHHHHhhhhcCCcccccccHHHHHHHHhhhhccCCCCCCCCccccccHHHhhHHhhccccCCceE
Confidence            98 677899999999999999999999999999999998653      24678999999999999999999988888999


Q ss_pred             EEEEecccCC---CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCC
Q psy17575        458 LRMKITLEEG---KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYC  534 (832)
Q Consensus       458 lR~K~~~~~~---~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~  534 (832)
                      +|++++..+.   +.|++.+++.+.+|...+.++.++||||||+||||++|||||||||.||+++|+.|.||+++||+..
T Consensus       165 ~r~~~~~~~~~~~~~d~~~~~~~~~~~d~v~~r~dg~ptY~lA~vVDD~~~gIThViRG~D~l~~T~~q~~l~~~Lg~~~  244 (331)
T d1gtra2         165 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV  244 (331)
T ss_dssp             EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHSCCSC
T ss_pred             EEEecccCCCceeEEccceeeeccCCCcccccccccccHHhhhHHHhhhhhcccceecccccccccHHHHHHHHhccCCC
Confidence            9999987754   4899999999988887788888999999999999999999999999999999999999999999986


Q ss_pred             C-CcccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Q psy17575        535 P-VQWEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVV  613 (832)
Q Consensus       535 P-~~~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~  613 (832)
                      | .++++.+++++|++||||++..+++++.+.||||||++||.+||++||+|+||+|||+.||||..+..+++..|+.++
T Consensus       245 p~~~h~~~~l~~~g~~lskr~l~~~~~~~~~~~~dd~~~~sl~~lr~~G~~peai~nyla~LGws~~d~~~e~~sLe~~~  324 (331)
T d1gtra2         245 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI  324 (331)
T ss_dssp             CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSSTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred             CcceeeccccccccchhhhcccchhcccCccccccCCCcccHHHHHHCCCCHHHHHHHHHHhCCCCCCCcccHHhHHHHH
Confidence            6 344466678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcc
Q psy17575        614 REVLND  619 (832)
Q Consensus       614 r~~l~~  619 (832)
                      |+.||+
T Consensus       325 r~~ln~  330 (331)
T d1gtra2         325 REDLNE  330 (331)
T ss_dssp             HHHHHH
T ss_pred             HHhccC
Confidence            999986

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.2e-68  Score=571.47  Aligned_cols=280  Identities=23%  Similarity=0.327  Sum_probs=232.3

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcCc---------ccc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPYQ---------ITH  390 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd~---------~~~  390 (832)
                      |+||||||||||||||||||||+||++||++||+|+|||||||++|++++|+++|++||+|||+.||+         +++
T Consensus         2 vvtRfaPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRidDtD~~R~~~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~   81 (305)
T d1j09a2           2 VVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR   81 (305)
T ss_dssp             CEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred             eEEecCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCchHHHHHHHHHHHHHhcCcccCCcCCCCCccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999984         689


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhccC----CCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccC
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFN----PLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEE  466 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~----~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~  466 (832)
                      ||+|++.|+++|.+|+++|+||+|+||++++...+    +.++.||+++.+..   .+.+..|    .++++|+|++...
T Consensus        82 qS~r~~~y~~~~~~Li~~g~aY~C~cs~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~R~k~~~~~  154 (305)
T d1j09a2          82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEA---EERARRG----EPHVIRLKVPRPG  154 (305)
T ss_dssp             GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHH---HHHHHTT----CCCEEEECCCSSC
T ss_pred             eecchhHHHHHHHHHHHcCCeeeccccchhhhhhhhhccCCCCccccchhhhH---HHHhhcC----CcceEEEeccccC
Confidence            99999999999999999999999999999997542    34455565554332   2333322    3579999987643


Q ss_pred             C--CCCceEEEeeeCCCCCCCCcee----EeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCcccc
Q psy17575        467 G--KQDPVAYRIKFLPHHRTGDSWC----IYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWEY  540 (832)
Q Consensus       467 ~--~~D~V~~Ri~~~~h~r~gd~~~----i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~ef  540 (832)
                      .  ..|.+.+.+.+.++ ..+|-++    ++|||||||||||++|||||||||.||+++++.|.||+++||+..|.+|+.
T Consensus       155 ~~~~~d~i~~~~~~~~~-~~~D~vi~r~dg~p~Y~~A~vvDD~~~githviRG~Dl~~~t~~q~~l~~~Lg~~~p~~~h~  233 (305)
T d1j09a2         155 TTEVKDELRGVVVYDNQ-EIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHM  233 (305)
T ss_dssp             EEEEEETTTEEEEEEGG-GSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred             Cccccchhhceeeeccc-cCCCeEEECCCCCeehHHHHHHHHHHccCccccccccceeccHHHHHHHHhhcCCCCceeee
Confidence            2  23555555544322 2343222    499999999999999999999999999999999999999999999965554


Q ss_pred             c-ccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHHHHHHh
Q psy17575        541 G-RLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEAVVREV  616 (832)
Q Consensus       541 ~-hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~~~r~~  616 (832)
                      . .++.+|+|||||+.                .+||++||++||+||||+|||+.|||+..+  +.+++ ++++.|+.+.
T Consensus       234 ~l~~~~~g~KLSKr~~----------------~~tl~~lr~~G~~peai~~~l~~lG~~~~~~~~~~sl~e~i~~f~~~~  297 (305)
T d1j09a2         234 PLLRNPDKTKISKRKS----------------HTSLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAFTWER  297 (305)
T ss_dssp             CCCBCTTSCBCCTTTS----------------CCBHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHCCGGG
T ss_pred             cccccCccccccccCC----------------ccCHHHHHHcCCCHHHHHHHHHHhCCCCCCCcCcCCHHHHHHhCCHhh
Confidence            3 23557999999983                359999999999999999999999999875  35676 5688899999


Q ss_pred             hccCCCc
Q psy17575        617 LNDTAPR  623 (832)
Q Consensus       617 l~~~a~R  623 (832)
                      ++++++|
T Consensus       298 v~k~~~~  304 (305)
T d1j09a2         298 VSLGGPV  304 (305)
T ss_dssp             CCCSCCB
T ss_pred             CCCCCCC
Confidence            9988876

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-Q tRNA-Asp synthetase YadB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-67  Score=556.85  Aligned_cols=259  Identities=19%  Similarity=0.246  Sum_probs=195.4

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCcC-cccccchhHHH
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKPY-QITHSSDYFHQ  397 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~pd-~~~~qSd~~~~  397 (832)
                      ++||||||||||+||||||||||+||+|||++||+|+|||||||++|++++|+++|+++|+|||+.|| .+++||+|++.
T Consensus         2 ~~~tRFAPsPtG~lHiG~~rtal~n~~~Ak~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlgl~~d~~~~~QS~r~~~   81 (286)
T d1nzja_           2 QYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDA   81 (286)
T ss_dssp             CCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCHHH
T ss_pred             CceEeeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCCHHHHHHHHHHHHHhhhccccccchhHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999 58999999999


Q ss_pred             HHHHHHHHHHcCCccccCCCHHHHhccCC-CCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEEecccCC---------
Q psy17575        398 LYEWAVKLIKKGLAYVCHQKSDEMKGFNP-LPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMKITLEEG---------  467 (832)
Q Consensus       398 ~ye~A~~Li~~G~AY~C~Cs~eel~~~~~-~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K~~~~~~---------  467 (832)
                      |++++.+|+++|+||+|+||++++++.+. ..+.|++....               .....+|++.+....         
T Consensus        82 Y~~~~~~L~~~g~aY~C~ct~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~r~~~~~~~~~~~~~~~~~  146 (286)
T d1nzja_          82 YREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHG---------------PDNAAVRIRQQHPVTQFTDQLRGI  146 (286)
T ss_dssp             HHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCC---------------STTCEEEECCSSCCCEEEETTTEE
T ss_pred             HHHHHHHHHHcCCcccccccHHHHHhhccccccccccccch---------------hhhhhhhhcccccccceeeeeeee
Confidence            99999999999999999999999998653 23444443321               112344554432210         


Q ss_pred             --------CCCceEEEeeeCCCCCCCCceeEeeccceeeeeecCCCCcceeeecccccccchhHHHHHHhcCCCCCCccc
Q psy17575        468 --------KQDPVAYRIKFLPHHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRSSYYWLCNALDIYCPVQWE  539 (832)
Q Consensus       468 --------~~D~V~~Ri~~~~h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~~~~~~~L~~aL~~~~P~~~e  539 (832)
                              ..|+|+.|       ++|     +|||||||||||++|||||||||+||++||++|.||+++||++.|   +
T Consensus       147 ~~~~~~~~~~D~vi~R-------~dg-----~ptY~lA~vVDD~~~gIThViRG~D~l~st~~Q~~L~~~lg~~~P---~  211 (286)
T d1nzja_         147 IHADEKLAREDFIIHR-------RDG-----LFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVP---D  211 (286)
T ss_dssp             EECCHHHHHSCCEEEC-------TTS-----CBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCC---E
T ss_pred             eeeccccccccccccC-------CCC-----CeeeeehhhhcccccccceecccccccchHHHHHHHHHhhCCCcc---c
Confidence                    14666665       333     899999999999999999999999999999999999999999999   5


Q ss_pred             ccccCC----CCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCC--cccCH-HHHHHH
Q psy17575        540 YGRLNV----NYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQ--AVVSP-NMLEAV  612 (832)
Q Consensus       540 f~hL~l----~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~--~~~~~-~~le~~  612 (832)
                      |+|+|+    +|+|||||+++..|++                    |.+++++.++|..+||+...  ..++. ++|+++
T Consensus       212 y~H~pli~~~~g~KLSKr~~~~~i~~--------------------~~~~~~~~~~L~~lG~~~~~~~~~~s~~e~l~~~  271 (286)
T d1nzja_         212 YIHLPLALNPQGAKLSKQNHAPALPK--------------------GDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSA  271 (286)
T ss_dssp             EEEECBCCC-------------CCCS--------------------SCCHHHHHHHHHHTTCCCCSCGGGSCHHHHHHHH
T ss_pred             eeecceEEccCCcccccccCccchhc--------------------CCccHHHHHHHHHhCCCCccccccCCHHHHHHHH
Confidence            777764    6899999999887743                    34445555555556665432  45665 456766


Q ss_pred             HHHhhccCCCceeEE
Q psy17575        613 VREVLNDTAPRVMVV  627 (832)
Q Consensus       613 ~r~~l~~~a~R~~av  627 (832)
                      +..+--...+|..+|
T Consensus       272 i~~f~l~~i~ks~ai  286 (286)
T d1nzja_         272 VKNWRLTAVPESAIV  286 (286)
T ss_dssp             HHTCCGGGSCCCSBC
T ss_pred             HhccChhhCCCCCCC
Confidence            665433344565543

>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
domain: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-56  Score=456.18  Aligned_cols=200  Identities=38%  Similarity=0.654  Sum_probs=181.1

Q ss_pred             CCceeEEecCcceEEeecCCCCceeEEeecCCCCCCCCceeEEeecceeEEeCCccccccccCccccCCCCeeeeeecCc
Q psy17575        621 APRVMVVIDPLPLHIVNFDQLNVDTKFTVPDFPNDATKGSHDIQFDRTIYIEKSDFKVIQEKGYRRLAPGQGVGLRYAGL  700 (832)
Q Consensus       621 a~R~~av~dp~kl~i~N~~~~~~~~~~~~p~~P~~~~~G~~~v~~~~~iyIe~~D~~~~~~~~~~rL~~~~~V~L~~~~~  700 (832)
                      |||+|||+||+||+|+|++.  ..+.+++|+||++|++|+|+++|++.||||++||++.++++|+||+||++|+||+||+
T Consensus         1 ApR~maVldPlkv~I~n~~~--~~~~~~vp~HPk~~~~G~r~i~~~~~iyIe~~Df~~~~~~~~~rL~~g~~V~L~~~~~   78 (209)
T d1gtra1           1 APRAMAVIDPVKLVIENYQG--EGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYV   78 (209)
T ss_dssp             CCEECEESSEEEEEETTCCS--SCEEEEEESSTTCGGGCEEEEEECSEEEEEGGGEESSCCSSCCSEESSSEEEETTSCE
T ss_pred             CCceEEEcCCEEEEEEcCCC--CeEEEEecCCCCCCccceEEEEecCcEEEehHHhhhccchhheeecCCceeEEeccce
Confidence            79999999999999999975  4578999999999999999999999999999999999999999999999999999986


Q ss_pred             eEEEeeEeecCCCCEEEEEEEEcCC------CCCCCCceEEEeccC--CceeEEEEcccccCCCCCCCCCCCCCCccccC
Q psy17575        701 VLEVDKVNTKCNGAITSIDVKATPV------DVDNKPKAFIHWVAR--PISIEVRLYSTLFLHKNPEDTYQVPEGYLSDI  772 (832)
Q Consensus       701 ~~~~~~~~~~~~g~v~e~~~~~~~~------~~~~k~k~~I~Wv~~--~~~~evr~y~~Lf~~~~p~~~~~~~~~~~~~i  772 (832)
                      + .|.++.+|.+|.|++|+|+++++      ++.+|+|++||||+.  .++|++|+|++||++++|++.    ++|+++|
T Consensus        79 i-~~~~v~~d~~g~v~~l~~~~~~~~~~~~~~~~kk~k~~i~Wv~~~~~v~~~~~~yd~Lf~~~~p~~~----~d~~~~i  153 (209)
T d1gtra1          79 I-KAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAA----DDFLSVI  153 (209)
T ss_dssp             E-EEEEEEECSSSCEEEEEECCCSCCC-----------CEECCEETTTCEEEEEEEECCSBSSSCGGGS----SSSGGGB
T ss_pred             E-EeEEEeccCCcceEEEEEEeccccccCCcccceeecccceeccCCcceeeEEEEeccccccCCcccc----cchhhhc
Confidence            5 79999999999999999999887      345778899999975  489999999999999999754    5899999


Q ss_pred             CCCceeEEEEEeecCccCCCCCCeEEeEEeeeEEEec-CCCCCCccEEEeeeccccC
Q psy17575        773 NPDSLKVSIGYADSGFVGVKPYDRFQFERVGFFTVDR-DSNINHKPVVNLTVSLKED  828 (832)
Q Consensus       773 N~~S~~~~~~~~e~~~~~~~~~~~~QfeR~Gyf~~D~-~~~~~~~lv~n~~v~lk~~  828 (832)
                      ||+|+.+..|++|+++.++++|++|||||+|||+||+ +++++ ++|||||||||++
T Consensus       154 N~~S~~~~~~~~E~~l~~~k~~d~~QFER~GYF~~D~~~~~~~-~~VfNr~V~Lkds  209 (209)
T d1gtra1         154 NPESLVIKQGFAEPSLKDAVAGKAFQFEREGYFCLDSRHSTAE-KPVFNRTVGLRDT  209 (209)
T ss_dssp             CTTSEEEEEEEECGGGGGCCBTCEEEETTTEEEEECTTTCCSS-SCEEEEEEECCCC
T ss_pred             CCccceeeeeEEchhHhhCCCCCeEEEEEeeEEEeCCCCCCCC-CEEEEEEeeccCC
Confidence            9999999999999999999999999999999999997 66666 9999999999985

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=6.7e-15  Score=149.78  Aligned_cols=257  Identities=13%  Similarity=-0.022  Sum_probs=119.8

Q ss_pred             CCceEEeeCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCcccccHHHHHHHHHHHHHcCCCc---C--
Q psy17575        317 GGKVRTRFPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNPEKEEEKFFTGIKDMVQWLGYKP---Y--  386 (832)
Q Consensus       317 ~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp~r~~~e~~~~I~edL~WLGl~p---d--  386 (832)
                      +.++++..+|+|||+|||||||++++...+||     .+++.++.++||++..+...........  ++.+-..   +  
T Consensus        17 k~~~v~~~~~~PnG~lHIGHlr~~i~gD~laR~lr~~G~~V~~~~~~dd~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~   94 (317)
T d1irxa2          17 KEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWK--DYLGMPISEVPDP   94 (317)
T ss_dssp             CSEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGG--GGTTSBGGGSCCT
T ss_pred             CCeEEEECCCCCCCCccccccHHHHHHHHHHHHHHHcCCCEEEEEEeccCcchhhhHHhhhhhHH--HhccCcccccccc
Confidence            46789999999999999999999999888876     3456899999999988765432222211  1222111   1  


Q ss_pred             cccccchhHHHHHHHHHHHHHcCCccccCCCHHHHhccCCCCC--CCCCCCh--hHhHHHHHHHHc-CcccCCCceEEEE
Q psy17575        387 QITHSSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKGFNPLPS--PWRERPV--EENVKLFEAMKN-GLIDEGEATLRMK  461 (832)
Q Consensus       387 ~~~~qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~~~~~~~--~~R~r~~--ee~L~~f~~m~~-g~~~~g~~~lR~K  461 (832)
                      .....+..+......-..+...+..|.+.+..+..........  .......  .+.+ ....+.. .............
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  173 (317)
T d1irxa2          95 WGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEIL-NKYREIAKQPPLPENWWPAMV  173 (317)
T ss_dssp             TSSSSSHHHHHHHHHHHHHHTTTCCCEEEEHHHHHHTTTTHHHHHHHHHTHHHHHHHH-HHHHHHTTCCCCCTTCCSEEE
T ss_pred             cccccccchhhhhHHhhHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-cceeeeeccccccccccccch
Confidence            1122233333333334456667778877665554433210000  0000000  0000 0001110 0000000000000


Q ss_pred             ecccCC--------CCCceEEEeeeCC-----CCCCCCceeEeeccceeeeeecCCCCcceeeeccccccc----chhHH
Q psy17575        462 ITLEEG--------KQDPVAYRIKFLP-----HHRTGDSWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSR----RSSYY  524 (832)
Q Consensus       462 ~~~~~~--------~~D~V~~Ri~~~~-----h~r~gd~~~i~PtY~fA~~VdD~l~gITHvlRg~E~~~~----~~~~~  524 (832)
                      ......        ..+..........     ..+.++.   .+.|...+.......++.+.+.|.|+...    .+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~  250 (317)
T d1irxa2         174 YCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNV---KLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKE  250 (317)
T ss_dssp             ECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCE---EECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHH
T ss_pred             hhhccccccccccccccccceeeecccccccccccccCC---cccccccchhhhccCceeEEEecceecccchhhhHhhh
Confidence            000000        0011101000000     0011211   22222222222223344444555555433    34556


Q ss_pred             HHHHhcCCCCCCcccccccCCCC--cccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHh
Q psy17575        525 WLCNALDIYCPVQWEYGRLNVNY--TVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARM  595 (832)
Q Consensus       525 ~L~~aL~~~~P~~~ef~hL~l~g--tkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~l  595 (832)
                      .++..+|...|..+.|+.+.++|  .|||||+++      .         .++..|.+ .+.|++|+-|++..
T Consensus       251 ~~~~~~g~~~~~~~~~~~l~l~ge~~KMSkrkGn------~---------I~~~dll~-~~~~d~~Ry~~l~~  307 (317)
T d1irxa2         251 IIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN------V---------ILLSDLYE-VLEPGLVRFIYARH  307 (317)
T ss_dssp             HHHHHHCCCCCBCCEECCEEESCC---------C------C---------CCHHHHHT-TSCHHHHHHHHHSS
T ss_pred             hhhhhcCCCCcEEEEEEEEEECCccccccCCCCc------c---------ccHHHHHH-HCCHHHHHHHhcCC
Confidence            67788899999877788777754  599999974      2         36788876 78999999777643

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=5.3e-11  Score=125.72  Aligned_cols=93  Identities=15%  Similarity=0.033  Sum_probs=67.6

Q ss_pred             EEeeCCCCCCcCchHHHHHHHHHHHHHH--hcCC---EEEEeccCCCcc-------------cccHHHHHHHHHHHHHcC
Q psy17575        321 RTRFPPEPNGILHIGHAKAININFGYAA--AHNG---ICFLRYDDTNPE-------------KEEEKFFTGIKDMVQWLG  382 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG---~~iLRiDDTDp~-------------r~~~e~~~~I~edL~WLG  382 (832)
                      +|==+|.|||.|||||+|++++...++|  +..|   .++--+||.+.+             .-...+...+.++++.||
T Consensus         6 i~~~~P~~nG~lHiGHar~~v~~D~l~R~lr~~G~~V~~v~~~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~   85 (350)
T d1pfva2           6 VTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFN   85 (350)
T ss_dssp             EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EeCCCCCCCCCccccccHHHHHHHHHHHHHHhcCCceEecCccCCccHHHHHHHHHcCCCHHHHHHhHHHHHHHHHHHcC
Confidence            3334689999999999999999888776  3344   466667776532             224578899999999999


Q ss_pred             CCcCcc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575        383 YKPYQI--THSSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       383 l~pd~~--~~qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      +.++..  +....+.+...+...+|.++|.+|.
T Consensus        86 i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~  118 (350)
T d1pfva2          86 ISYDNYHSTHSEENRQLSELIYSRLKENGFIKN  118 (350)
T ss_dssp             CCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCcccCCCcCCcccchHHHHHHHHHhhccceee
Confidence            988743  3333344444456678999999996

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2e-10  Score=120.44  Aligned_cols=253  Identities=15%  Similarity=0.095  Sum_probs=142.2

Q ss_pred             CCCCCCcCchHHHHHHHHHHHHHHh-----cCCEEEEeccCCCccc-------------ccHHHHHHHHHHHHHcCCCcC
Q psy17575        325 PPEPNGILHIGHAKAININFGYAAA-----HNGICFLRYDDTNPEK-------------EEEKFFTGIKDMVQWLGYKPY  386 (832)
Q Consensus       325 aPsPtG~LHIGharaaL~n~l~Ar~-----~gG~~iLRiDDTDp~r-------------~~~e~~~~I~edL~WLGl~pd  386 (832)
                      .|+|||.+||||+|.|++-..+||-     +.-.++-=+||-+++.             -...+.....+++.-+++..+
T Consensus        29 Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~~~~~~~e~~~~~~~~~~~~~~~~~i~~~  108 (315)
T d1li5a2          29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP  108 (315)
T ss_dssp             CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhhhhhccccccccchhhhhhhHHhcCCCCC
Confidence            6999999999999999998888875     4445555666655432             123455667788999998654


Q ss_pred             -cccccchhHHHHHHHHHHHHHcCCccccCC----CHHHHhccCCCCCCCCCCChhHhHHHHHHHHcCcccCCCceEEEE
Q psy17575        387 -QITHSSDYFHQLYEWAVKLIKKGLAYVCHQ----KSDEMKGFNPLPSPWRERPVEENVKLFEAMKNGLIDEGEATLRMK  461 (832)
Q Consensus       387 -~~~~qSd~~~~~ye~A~~Li~~G~AY~C~C----s~eel~~~~~~~~~~R~r~~ee~L~~f~~m~~g~~~~g~~~lR~K  461 (832)
                       ....++++.+.+.+...+|..+|.+|....    ............+.+.....+          .|.        +..
T Consensus       109 ~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--------~~~  170 (315)
T d1li5a2         109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQ----------AGA--------RVD  170 (315)
T ss_dssp             SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC------------------------------
T ss_pred             cEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccccccCccccccccccc----------cCC--------ccc
Confidence             555667788888888899999999875321    111111000000101000000          010        000


Q ss_pred             ecccC-CCCCceEEEeeeCCCCCCCCcee-Eeeccceeeee--ecCC-CCcceeeecccccccchhHHH-H-HHhcCCCC
Q psy17575        462 ITLEE-GKQDPVAYRIKFLPHHRTGDSWC-IYPTYDYTHCL--CDSI-EHITHSLCTKEFQSRRSSYYW-L-CNALDIYC  534 (832)
Q Consensus       462 ~~~~~-~~~D~V~~Ri~~~~h~r~gd~~~-i~PtY~fA~~V--dD~l-~gITHvlRg~E~~~~~~~~~~-L-~~aL~~~~  534 (832)
                      ..... ...|++.++......++....|- .+|+|+-.++.  .|.+ ..++-..-|.++......+.- . ....+...
T Consensus       171 ~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  250 (315)
T d1li5a2         171 VVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQY  250 (315)
T ss_dssp             ----CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCC
T ss_pred             ccccccChhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccccccccccchhhhccccccc
Confidence            00000 11355555543322223322332 36776654443  3554 346666666666533222111 1 11123233


Q ss_pred             CCc-ccccccCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Q psy17575        535 PVQ-WEYGRLNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAV  612 (832)
Q Consensus       535 P~~-~ef~hL~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~  612 (832)
                      |.. ...+++.++|.|||||.++               ..|++.|.+ .+.|+++|-|++.-. ..++..|+++.|...
T Consensus       251 ~~~~~~~~~l~~~G~KMSKs~Gn---------------~V~~~dlle-~~g~D~lRy~lls~~-~~s~ldFs~e~l~~a  312 (315)
T d1li5a2         251 VNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLK-YYDAETVRYFLMSGH-YRSQLNYSEENLKQA  312 (315)
T ss_dssp             EEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHT-TSCHHHHHHHHHSSC-TTSCEEECHHHHHHH
T ss_pred             ccEEEEEEEEecCCcEecCcCCC---------------cccHHHHHH-hCCHHHHHHHHHcCC-CCCCCCcCHHHHHHH
Confidence            332 2346677899999999964               247888887 999999999997532 345678899877653

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=6.3e-09  Score=112.39  Aligned_cols=94  Identities=22%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHH--hcCCEEEEeccCCC---c-------------cc----------------
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAA--AHNGICFLRYDDTN---P-------------EK----------------  365 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar--~~gG~~iLRiDDTD---p-------------~r----------------  365 (832)
                      +++=-+|.|||.||||||+++++--.+||  +..|.=++.+--||   .             ..                
T Consensus        37 ~i~~~pPy~NG~lHlGH~~~yv~~Dv~~Ry~r~~G~~V~~v~g~D~hG~~i~~~aek~~~~~~~~~~~~~~~~~~~~~~~  116 (425)
T d1ivsa4          37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ  116 (425)
T ss_dssp             EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHHHHHTTTCCGGGSTTTHHHHHHHH
T ss_pred             EEEcCCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCceeecCcccCCcchHHHHHHHhhcccCCChHHhcHHHHHHHHHH
Confidence            44555899999999999999999989998  45565555543222   1             10                


Q ss_pred             ccHHHHHHHHHHHHHcCCCcCc----ccccchhHHHHHHHHHHHHHcCCccc
Q psy17575        366 EEEKFFTGIKDMVQWLGYKPYQ----ITHSSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       366 ~~~e~~~~I~edL~WLGl~pd~----~~~qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      ...++.+.|.++++.||+..|.    .+...++.....+...+|.++|.+|.
T Consensus       117 ~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~  168 (425)
T d1ivsa4         117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR  168 (425)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred             HHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccc
Confidence            0134678899999999997762    12223344555566678999999884

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=3e-08  Score=103.34  Aligned_cols=94  Identities=16%  Similarity=0.048  Sum_probs=66.0

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHH-----hcCCEEEEeccCCCc-------------ccccHHHHHHHHHHHHHc
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAA-----AHNGICFLRYDDTNP-------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar-----~~gG~~iLRiDDTDp-------------~r~~~e~~~~I~edL~WL  381 (832)
                      ++|==+|.|||.|||||+|.+++--.+||     .+.-.++.-.||.+.             ..-...+...+.++++.+
T Consensus         6 ~~~~~~PypnG~lHiGH~r~~v~~D~l~R~lr~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~   85 (348)
T d2d5ba2           6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL   85 (348)
T ss_dssp             EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEecCCCCCCCCcccccCHHHHHHHHHHHHHHhcCCCeEecCcCCCCCHHHHHHHHHcCCCHHHhhhhHHHHHHHHHHhc
Confidence            34444688999999999999998777765     334456666788643             334467788899999999


Q ss_pred             CCCcCc-ccccchhHH-HHHHHHHHHHHcCCccc
Q psy17575        382 GYKPYQ-ITHSSDYFH-QLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd~-~~~qSd~~~-~~ye~A~~Li~~G~AY~  413 (832)
                      |+.++. ....+..+. .......+++++|.+|.
T Consensus        86 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  119 (348)
T d2d5ba2          86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYY  119 (348)
T ss_dssp             TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CccccceeecccchhhHHHHHHHHHHHhhCcccc
Confidence            998874 233333333 33345668999999874

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.52  E-value=2.9e-07  Score=96.19  Aligned_cols=93  Identities=17%  Similarity=0.102  Sum_probs=59.9

Q ss_pred             EEeeCCCCCCcCchHHHH-HHHHHHHHHH-----hcCCEEEEeccCCCc-------------ccccHHHHHHHHHHHHHc
Q psy17575        321 RTRFPPEPNGILHIGHAK-AININFGYAA-----AHNGICFLRYDDTNP-------------EKEEEKFFTGIKDMVQWL  381 (832)
Q Consensus       321 ~tRFaPsPtG~LHIGhar-aaL~n~l~Ar-----~~gG~~iLRiDDTDp-------------~r~~~e~~~~I~edL~WL  381 (832)
                      ++==+|.|||.|||||++ +++....+||     .++-.++.=.||.+.             +.-...+...+.+++.-+
T Consensus         6 v~~~~P~p~G~lHiGH~~~~~i~~Dil~R~~r~~G~~V~~v~g~D~~g~~i~~~A~~~g~~~~~~~~~~~~~~~~~~~~~   85 (361)
T d1rqga2           6 VTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRA   85 (361)
T ss_dssp             EEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCCCcccccccccHHHHHHHHHHHHhcCCceEecCccCcccHHHHHHHHHcCCCHHHHHHHHHHhhccccccc
Confidence            344469999999999966 5676666665     234456666676432             223467788889999999


Q ss_pred             CCCcCcccc--cchhHHHHHHHHHHHHHcCCccc
Q psy17575        382 GYKPYQITH--SSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       382 Gl~pd~~~~--qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      ++.++....  ...+.+..+.....+.++|..|.
T Consensus        86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~  119 (361)
T d1rqga2          86 KISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK  119 (361)
T ss_dssp             TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             ccccccccccccchhhhhhhhhhhhccccCceee
Confidence            998774322  22233333344557888888654

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.43  E-value=3.5e-07  Score=99.08  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=47.2

Q ss_pred             cCCCCcccchhHHHHhhhcCccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHH
Q psy17575        543 LNVNYTVVSKRKIAKLIEENIVNDWDDPRLFTLTALRRRGFPPEAINKFCARMGVTGAQAVVSPNMLEAVVRE  615 (832)
Q Consensus       543 L~l~gtkLSKRk~~~lv~~g~v~gwdDPr~~tL~~lrrrG~~PeAI~nfl~~lG~s~~~~~~~~~~le~~~r~  615 (832)
                      |.++|.||||++++      .         .++..+.++ |.|++||-||+..+--..+..|+++.|+..+|+
T Consensus       396 L~~~G~KMSKS~gn------~---------I~~~dll~~-ygaD~lR~yl~~~~~~~~d~~Fs~~~~~e~~~~  452 (452)
T d1ilea3         396 LDEKGQKMSKSKGN------V---------VDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVRD  452 (452)
T ss_dssp             ECTTSSCCCTTTTC------C---------CCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHH
T ss_pred             ECCCCcccCCCCCC------C---------cCHHHHHHH-cCcHHHHHHHHhcCCCCCCCCcCHHHHhHHhcC
Confidence            67899999999963      2         367777766 889999999998876678899999999988874

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.26  E-value=3.3e-06  Score=92.50  Aligned_cols=94  Identities=22%  Similarity=0.184  Sum_probs=64.5

Q ss_pred             eEEeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe---ccCCCcccc-------------------------cHH
Q psy17575        320 VRTRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLR---YDDTNPEKE-------------------------EEK  369 (832)
Q Consensus       320 v~tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR---iDDTDp~r~-------------------------~~e  369 (832)
                      +++=-||.|||.||||||++.++--.+||-  ..|.-++.   +|+.....+                         ..+
T Consensus        51 ~~~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~rm~G~~V~~~~G~D~~G~pie~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (450)
T d1ffya3          51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE  130 (450)
T ss_dssp             CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCCchhhhHHHHHHHHHHHHHHHHhcCCccccccccccCCcHHHHHHHhhCCccccccHHHHhhhcchhhhh
Confidence            555668999999999999999998888875  33444433   344432211                         246


Q ss_pred             HHHHHHHHHHHcCCCcC--cc--cccchhHHHHHHHHHHHHHcCCccc
Q psy17575        370 FFTGIKDMVQWLGYKPY--QI--THSSDYFHQLYEWAVKLIKKGLAYV  413 (832)
Q Consensus       370 ~~~~I~edL~WLGl~pd--~~--~~qSd~~~~~ye~A~~Li~~G~AY~  413 (832)
                      +.+.+.++++.||+..|  ..  |...+|.........+|.++|++|.
T Consensus       131 ~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~  178 (450)
T d1ffya3         131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK  178 (450)
T ss_dssp             HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeec
Confidence            77889999999998765  32  3333343334455668999999996

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=3.7e-06  Score=89.33  Aligned_cols=49  Identities=10%  Similarity=0.179  Sum_probs=31.9

Q ss_pred             Ccceeee--cccccccchhHHHHHHhcCCCCCCcccccccCCCC-cccchhHHH
Q psy17575        506 HITHSLC--TKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNY-TVVSKRKIA  556 (832)
Q Consensus       506 gITHvlR--g~E~~~~~~~~~~L~~aL~~~~P~~~ef~hL~l~g-tkLSKRk~~  556 (832)
                      +...+|-  |.||...-++-...+++||+..+..  ..|+...- .+||||++.
T Consensus       228 ~~D~~I~V~g~dq~~~~~~l~~~l~~lg~~~~~~--~~h~~~g~v~kMStR~G~  279 (348)
T d1f7ua2         228 HFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKD--LQHVNFGMVQGMSTRKGT  279 (348)
T ss_dssp             CCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGG--EEEECCCCEESCCGGGTC
T ss_pred             CCCEEEEecccccchhhhhHHHHHHHhCCCcccc--eeeecCCccccccccCCC
Confidence            3444443  8888777777777888999865533  33554421 489999964

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=0.00029  Score=76.36  Aligned_cols=93  Identities=22%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             EeeCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEeccCCCcc----------------cccHHHHHHHHHHHHHcCC
Q psy17575        322 TRFPPEPNGILHIGHAKAININFGYAAA--HNGICFLRYDDTNPE----------------KEEEKFFTGIKDMVQWLGY  383 (832)
Q Consensus       322 tRFaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLRiDDTDp~----------------r~~~e~~~~I~edL~WLGl  383 (832)
                      +==||.+||.||||||.+.++--.+||.  -.|.-++-+--+|..                .-..++...|.+.++.||+
T Consensus        38 ~~~pP~~nG~lHiGH~~~~~~~D~~~R~~rm~G~~v~~~~G~D~~G~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~~g~  117 (494)
T d1h3na3          38 LVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGI  117 (494)
T ss_dssp             EECCCCSSSCCBHHHHHHHHHHHHHHHHHHHTTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EeCCCCCCCchhhhHHHHHHHHHHHHHHHHccCCcccCcCCcCcchHHHHHHHHHhCCChHHHHHHHHHHhHHHHHhcCc
Confidence            3337999999999999999999888875  568888888777632                1245788999999999997


Q ss_pred             CcC--cccccc--hhHHHHHHHHHHHHHcCCcccc
Q psy17575        384 KPY--QITHSS--DYFHQLYEWAVKLIKKGLAYVC  414 (832)
Q Consensus       384 ~pd--~~~~qS--d~~~~~ye~A~~Li~~G~AY~C  414 (832)
                      ..|  ..+++.  ++...-.+...+|.++|.+|..
T Consensus       118 ~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~  152 (494)
T d1h3na3         118 LYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRA  152 (494)
T ss_dssp             CCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCCceecCCccccchHHHHHHHhhhCCcEEee
Confidence            544  443333  3334444555689999999987

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.06  E-value=0.047  Score=56.40  Aligned_cols=94  Identities=18%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             ceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccC----CCcc--cccHHHHHHHHHHHHHcCCCcCc--ccc
Q psy17575        319 KVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDD----TNPE--KEEEKFFTGIKDMVQWLGYKPYQ--ITH  390 (832)
Q Consensus       319 ~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDD----TDp~--r~~~e~~~~I~edL~WLGl~pd~--~~~  390 (832)
                      .|.|=|-  |||.+||||...++-+|..- +.+..+++=|=|    |+..  .+..+....+..++-.+|++|.+  +..
T Consensus         3 ~v~tG~~--PSG~~HlG~~~g~i~~~~~l-q~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~   79 (326)
T d1i6la_           3 TIFSGIQ--PSGVITIGNYIGALRQFVEL-QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFI   79 (326)
T ss_dssp             EEEEEEC--CCSCCBHHHHHHTHHHHHHH-TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEE
T ss_pred             eeEeCcC--CCCccHHHHHHHHHHHHHHH-hCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEe
Confidence            3555454  58999999998888888654 447777776666    2222  12334555666788889999985  678


Q ss_pred             cchhHHHHHHHHHHHHHcCCccccCCCHHHHhc
Q psy17575        391 SSDYFHQLYEWAVKLIKKGLAYVCHQKSDEMKG  423 (832)
Q Consensus       391 qSd~~~~~ye~A~~Li~~G~AY~C~Cs~eel~~  423 (832)
                      ||+.- ...+++.       .|.|.++--++.+
T Consensus        80 qS~~~-~~~el~~-------~l~~~~~~~~l~r  104 (326)
T d1i6la_          80 QSEVP-AHAQAAW-------MLQCIVYIGELER  104 (326)
T ss_dssp             GGGCT-HHHHHHH-------HHHTTSCHHHHHT
T ss_pred             ecccc-hHHHHHH-------HHHhhhhhhhhhh
Confidence            99854 3444443       2457888777764

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.57  E-value=0.062  Score=55.01  Aligned_cols=80  Identities=23%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             HHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC----Cc---ccccHHHHHHHHHHH
Q psy17575        306 HDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT----NP---EKEEEKFFTGIKDMV  378 (832)
Q Consensus       306 ~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp---~r~~~e~~~~I~edL  378 (832)
                      .+.|.+-|+.....+.+=|  .|||.|||||.. ++.+|..-+..|..+++=|-|-    ++   ..+.....+....++
T Consensus        17 ~~el~~~l~~~~~~~y~G~--~PTG~lHlGh~v-~~~~~~~lq~~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~~   93 (306)
T d1j1ua_          17 EEELREVLKKDEKSAYIGF--EPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKVF   93 (306)
T ss_dssp             HHHHHHHHHSSSEEEEEEE--CCCSSCBHHHHH-HHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCeEEEeE--CCCCcchHHHHH-HHHHHHHHHHCCCcEEEEeccHHHHhhhccchhhhhhhhhHHHHHH
Confidence            5667777765433455544  457999999998 6777777777788888866663    22   122334555566778


Q ss_pred             HHcCCCcCcc
Q psy17575        379 QWLGYKPYQI  388 (832)
Q Consensus       379 ~WLGl~pd~~  388 (832)
                      ..+|++|..+
T Consensus        94 ~a~G~~~~~~  103 (306)
T d1j1ua_          94 EAMGLKAKYV  103 (306)
T ss_dssp             HHTTCCCEEE
T ss_pred             Hhhhcccccc
Confidence            8899988643

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=92.45  E-value=0.03  Score=58.83  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             ceEEe-eCCCCCCcCchHHHHHHHHHHHHHHh--cCCEEEEe
Q psy17575        319 KVRTR-FPPEPNGILHIGHAKAININFGYAAA--HNGICFLR  357 (832)
Q Consensus       319 ~v~tR-FaPsPtG~LHIGharaaL~n~l~Ar~--~gG~~iLR  357 (832)
                      +|+.= ..|.|||+||+||+|++++=-.+||-  +.|-=+.|
T Consensus         8 ~i~vEf~SpN~~kplHvGHlRs~iiGd~laril~~~G~~V~r   49 (370)
T d1iq0a2           8 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLV   49 (370)
T ss_dssp             EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             eEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHcCCEEEE
Confidence            34433 36999999999999999998777764  44554444

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tyrosyl-tRNA synthetase (TyrRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.16  Score=52.50  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=58.9

Q ss_pred             cHHHHHHhhhhcCCceEEeeCCCCCCcCchHHHHHHHHHHHHHHhcCCEEEEeccCC-----Ccccc-------cHHHHH
Q psy17575        305 THDLLREHIKYTGGKVRTRFPPEPNGILHIGHAKAININFGYAAAHNGICFLRYDDT-----NPEKE-------EEKFFT  372 (832)
Q Consensus       305 ~~~~~~~hl~~~~~~v~tRFaPsPtG~LHIGharaaL~n~l~Ar~~gG~~iLRiDDT-----Dp~r~-------~~e~~~  372 (832)
                      +.+.|.+-|+...-.|.+=|-  |||.|||||+..++.++.+.+ .|..+++=|-|-     ||.-.       ...+.+
T Consensus        20 ~~~eL~~~l~~~~~~vy~G~~--PTg~lHlG~~l~~~~l~~~q~-~g~~~~~~IaD~~a~~~~~~~~~~~~~~~~~~~~~   96 (339)
T d1n3la_          20 GEEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYEN   96 (339)
T ss_dssp             CHHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHccCCCEEEEeeC--CCCccHHHHHHHHHHHHHHHH-CCCcEEEEecchhhhccCCCCchHHHHHHHHHHHH
Confidence            356677767643334555555  579999999999988877665 588888766653     33211       123344


Q ss_pred             HHHHHHHHcCCCcCc--ccccchhH
Q psy17575        373 GIKDMVQWLGYKPYQ--ITHSSDYF  395 (832)
Q Consensus       373 ~I~edL~WLGl~pd~--~~~qSd~~  395 (832)
                      .|...+..+|+.|++  +..||+..
T Consensus        97 ~~~~~~~a~g~d~~k~~i~~~sd~~  121 (339)
T d1n3la_          97 VIKAMLESIGVPLEKLKFIKGTDYQ  121 (339)
T ss_dssp             HHHHHHHHHTCCCTTEEEEEGGGTT
T ss_pred             HHHHHHHhhccChHHheeeecChHh
Confidence            566778889999984  57788753

>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: GatB/YqeY motif
superfamily: GatB/YqeY motif
family: GatB/YqeY domain
domain: Hypothetical protein YqeY
species: Bacillus subtilis [TaxId: 1423]

Probab=90.45  E-value=0.19  Score=46.37  Aligned_cols=84  Identities=21%  Similarity=0.269  Sum_probs=64.1

Q ss_pred             chHHHHHHHHhCCCCCHHhHHHHHHHHHhC-CCccCHHHHHHHcCCcEEeCHHHHHHHHHHHHHHHHHHHHhcccccchh
Q psy17575        128 HLPLLVKYIVSKALDSTLRVDAALEYVLSH-VNAVNEKELEASCGVGVIVTSEDIEETVSKVVEKHKAELLDKRYRYNLG  206 (832)
Q Consensus       128 ~r~~l~~~I~~gklkt~~Ql~aAlkyl~~~-~~~~d~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~l~~~ry~~n~g  206 (832)
                      ++.-+-.|-..|+-.--.+..+-+++|... |.               .+|+|+|++.|.++|++..+.    .-+ ++|
T Consensus        61 r~es~e~y~~~~r~dl~e~e~~Ei~il~~yLP~---------------~lseeEl~~~v~~~i~e~~a~----~~k-dmG  120 (148)
T d1ng6a_          61 RKDSLQEFSNANRLDLVDKVQKELDILEVYLPE---------------QLSEEELRTIVNETIAEVGAS----SKA-DMG  120 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHGGGSCC---------------CCCHHHHHHHHHHHHHHTTCC----SGG-GHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHccc---------------cCCHHHHHHHHHHHHHHhCCC----ccc-hHH
Confidence            466777888888876666777778888776 43               679999999999999885543    222 899


Q ss_pred             hhHHHHHhhCC-CCChhhhHHHHHHH
Q psy17575        207 LVMQEVRTLLK-WADGKYIKSEVDVQ  231 (832)
Q Consensus       207 ~ll~~vR~~Lk-WAd~k~vK~~vD~~  231 (832)
                      .+|+.+++.++ =+||+.|...|-..
T Consensus       121 ~vM~~l~~~~~g~~Dg~~vs~~vk~~  146 (148)
T d1ng6a_         121 KVMGAIMPKVKGKADGSLINKLVSSQ  146 (148)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999998543 38999998877654

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.11  Score=55.10  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             CcccccccHHHHHHhhhhcCCc--eEEeeCCCCCCc-CchHHHHHHHHHHHHHHhcCCEEEEeccCC----Cccc---cc
Q psy17575        298 GYVVTEQTHDLLREHIKYTGGK--VRTRFPPEPNGI-LHIGHAKAININFGYAAAHNGICFLRYDDT----NPEK---EE  367 (832)
Q Consensus       298 ~~~~~~~~~~~~~~hl~~~~~~--v~tRFaPsPtG~-LHIGharaaL~n~l~Ar~~gG~~iLRiDDT----Dp~r---~~  367 (832)
                      |.+...---+.+.+.++. +.+  |.|=|  .|||. |||||+..++.+..+..+.|..+++=|-|.    +..-   +.
T Consensus        54 g~~f~hrd~~~il~~~~~-gkp~~vytG~--~PSg~~lHlGh~v~~~~~~~~q~~~~~~v~i~iaD~~a~~~~~~~~~e~  130 (386)
T d1r6ta2          54 GIFFSHRDMNQVLDAYEN-KKPFYLYTGR--GPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQA  130 (386)
T ss_dssp             TSEEEEESHHHHHHHHHT-TCCEEEEEEE--CCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHH
T ss_pred             ceeeeccCHHHHHHHHHc-CCCeEEEecc--CCCCchhHHHHHHHHHHHHHHHHhcccceEEEecchHhhhcccCCHHHH
Confidence            555533333333333443 333  34444  46795 999999999998667666677677666663    2211   22


Q ss_pred             HHHHHHHHHHHHHcCCCcCc--ccccchhH
Q psy17575        368 EKFFTGIKDMVQWLGYKPYQ--ITHSSDYF  395 (832)
Q Consensus       368 ~e~~~~I~edL~WLGl~pd~--~~~qSd~~  395 (832)
                      .++......++-.+|++|++  +..+|+++
T Consensus       131 ~~~~~e~~~~~lA~GlDp~kt~i~~~s~~~  160 (386)
T d1r6ta2         131 YGDAVENAKDIIACGFDINKTFIFSDLDYM  160 (386)
T ss_dssp             HHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred             HHHHHHHHHHHHHhCCCccceEEEeCcHHH
Confidence            34444555666678999995  45556543