Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 106
cd02968 142
cd02968, SCO, SCO (an acronym for Synthesis of Cyt
8e-05
>gnl|CDD|239266 cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold
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Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 39 QVDHTIIMYLIDPEGLFVDYYG 60
VDH+ +YL+DP+G V YYG
Sbjct: 120 LVDHSAAIYLVDPDGKLVRYYG 141
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II. Length = 142
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
106
KOG2792|consensus 280
99.63 COG1999 207
Uncharacterized protein SCO1/SenC/PrrC, involved i
99.17 PF02630 174
SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam
98.55 TIGR02540 153
gpx7 putative glutathione peroxidase Gpx7. This mo
97.25 cd02968 142
SCO SCO (an acronym for Synthesis of Cytochrome c
96.42 PLN02399 236
phospholipid hydroperoxide glutathione peroxidase
95.01 PLN02412 167
probable glutathione peroxidase
94.98 PTZ00056 199
glutathione peroxidase; Provisional
94.86 PTZ00256 183
glutathione peroxidase; Provisional
94.81 COG0386 162
BtuE Glutathione peroxidase [Posttranslational mod
94.74 PRK10606 183
btuE putative glutathione peroxidase; Provisional
94.6 cd00340 152
GSH_Peroxidase Glutathione (GSH) peroxidase family
93.18 PRK15412 185
thiol:disulfide interchange protein DsbE; Provisio
92.81 PRK03147 173
thiol-disulfide oxidoreductase; Provisional
92.69 TIGR00385 173
dsbE periplasmic protein thiol:disulfide oxidoredu
92.08 cd03015 173
PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-
90.96 KOG1651|consensus 171
89.81 PRK09437 154
bcp thioredoxin-dependent thiol peroxidase; Review
89.09 cd02969 171
PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot
88.63 cd02950 142
TxlA TRX-like protein A (TxlA) family; TxlA was or
88.04 cd02958 114
UAS UAS family; UAS is a domain of unknown functio
87.99 cd03017 140
PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit
87.48 cd03016 203
PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub
87.42 TIGR03137 187
AhpC peroxiredoxin. This gene contains two invaria
87.18 cd03011 123
TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso
86.59 PF02824 60
TGS: TGS domain; InterPro: IPR004095 The TGS domai
85.54 cd02966 116
TlpA_like_family TlpA-like family; composed of Tlp
85.04 TIGR01626 184
ytfJ_HI0045 conserved hypothetical protein YtfJ-fa
85.0 PTZ00253 199
tryparedoxin peroxidase; Provisional
84.58 PRK13599 215
putative peroxiredoxin; Provisional
84.25 PRK13190 202
putative peroxiredoxin; Provisional
84.21 PF13098 112
Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_
83.98 PRK13189 222
peroxiredoxin; Provisional
83.42 PRK10382 187
alkyl hydroperoxide reductase subunit C; Provision
81.21 PRK15000 200
peroxidase; Provisional
80.19
>KOG2792|consensus
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Probab=99.63 E-value=2.3e-16 Score=125.87 Aligned_cols=69 Identities=38% Similarity=0.599 Sum_probs=61.6
Q ss_pred cCCccccce--eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 11 GGTLPLCRP--LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 11 ~g~~~~~~~--~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
-||.+.+++ +.||||+++++.+. ++||+||||+++|||||+|+|+.+|+.+.+++++++.|+..|+.|+
T Consensus 209 TGT~eqvk~vak~yRVYfs~gp~d~-~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y~ 279 (280)
T KOG2792|consen 209 TGTTEQVKQVAKKYRVYFSTGPKDE-DQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASYR 279 (280)
T ss_pred cCCHHHHHHHHHHhEEeeccCCCCC-CCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhcc
Confidence 488888887 34999999866444 7899999999999999999999999999999999999999998875
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
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Probab=99.17 E-value=3.8e-11 Score=91.41 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=59.7
Q ss_pred eeeecCCccccce--eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 7 LHFIGGTLPLCRP--LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 7 ~~~~~g~~~~~~~--~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.+++.|+.+.+.. +.|+|++++.+.+++ ++|+||||+.+||+||+|++...+....+|++|+++|+.++++
T Consensus 134 ~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~-~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 134 WIGLTGTPEQIEEVAKAYGVFYSKVPLDDS-QNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred eeeeeCCHHHHHHHHHHhcceeeecccCCC-CCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 4566777666666 459999876665543 6899999999999999999999999999999999999998854
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems
Back Show alignment and domain information
Probab=98.55 E-value=2e-08 Score=74.00 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=40.0
Q ss_pred ecCCccccce--eeEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecC
Q psy17586 10 IGGTLPLCRP--LMYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQ 61 (106)
Q Consensus 10 ~~g~~~~~~~--~~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~ 61 (106)
.-|+.+.+++ ..|++++.+...+.++++|.|+||+.+||+||+||++..|..
T Consensus 120 ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 120 LTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp EEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred eEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 3455555555 238888887776666778999999999999999999999864
In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7
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Probab=97.25 E-value=0.00025 Score=50.24 Aligned_cols=40 Identities=30% Similarity=0.535 Sum_probs=35.6
Q ss_pred ceeEeccee-------EEEEcCCCcEEEeecCCCCHHHHHHHHHHHH
Q psy17586 37 WFQVDHTII-------MYLIDPEGLFVDYYGQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 37 dY~VDHSa~-------iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l 76 (106)
+|.++|+.. +||||++|+++..+....++++|.++|+.+|
T Consensus 107 ~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 107 RFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 588899765 9999999999999999999999999888764
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold
Back Show alignment and domain information
Probab=96.42 E-value=0.0049 Score=42.00 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=29.7
Q ss_pred eEEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeec
Q psy17586 21 MYSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 21 ~y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~ 60 (106)
.|+++..+...+ ..+|.+.|+..+|||||+|+++..+.
T Consensus 104 ~~g~~~~~~~~~--~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 104 AFGVYYEKVPED--DGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HhcEEEEecCCC--CCceeEeccceEEEECCCCCEEEeec
Confidence 388877654322 24688999999999999999998875
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Back Show alignment and domain information
Probab=95.01 E-value=0.041 Score=43.09 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=33.3
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
|-|--..||||++|+++..+....++++|.+.|+.+|+
T Consensus 198 i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 198 IKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 45556799999999999999999999999999998874
>PLN02412 probable glutathione peroxidase
Back Show alignment and domain information
Probab=94.98 E-value=0.06 Score=39.07 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.8
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
..||+|++|+++..+....+++++.+.|+.+|.+
T Consensus 133 ~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 133 TKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred eeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999988753
>PTZ00056 glutathione peroxidase; Provisional
Back Show alignment and domain information
Probab=94.86 E-value=0.082 Score=39.73 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=32.9
Q ss_pred ecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHH
Q psy17586 41 DHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 41 DHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~ 79 (106)
.+....||+|++|+++..+....+++++.+.|..++++.
T Consensus 143 ~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 143 GWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred CCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 343359999999999999988889999999999999543
>PTZ00256 glutathione peroxidase; Provisional
Back Show alignment and domain information
Probab=94.81 E-value=0.055 Score=39.72 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=33.3
Q ss_pred eEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 39 QVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 39 ~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.+.++...||+|++|+++..+....+++++.+.|..+++
T Consensus 144 ~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 144 QIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred ccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 456666789999999999999888889999888888774
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Probab=94.74 E-value=0.041 Score=41.66 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=29.7
Q ss_pred EEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 46 MYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
=||+|++|+.+..|.+.+.|+++..+|+.+|.
T Consensus 130 KFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 130 KFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred EEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 59999999999999999999999999988874
>PRK10606 btuE putative glutathione peroxidase; Provisional
Back Show alignment and domain information
Probab=94.60 E-value=0.039 Score=41.50 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=28.4
Q ss_pred EEEEcCCCcEEEeecCCCCHHH--HHHHHHHHH
Q psy17586 46 MYLIDPEGLFVDYYGQNKKPEE--VSNSIIVNM 76 (106)
Q Consensus 46 iYLmDPdGrfv~~f~~~~spee--iAe~Ir~~l 76 (106)
-||+|++|+.+..|.+...|++ |.+.|.++|
T Consensus 149 KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 149 KFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred EEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987 888888776
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate
Back Show alignment and domain information
Probab=93.18 E-value=0.12 Score=36.49 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=26.3
Q ss_pred EecceeEEEEcCCCcEEEeecCCCCHHHHHHH
Q psy17586 40 VDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNS 71 (106)
Q Consensus 40 VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~ 71 (106)
+-|...+||+|++|+++..+....+++++.+.
T Consensus 120 ~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 120 IKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred cccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 44555799999999999999988888877654
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Back Show alignment and domain information
Probab=92.81 E-value=0.29 Score=35.87 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=37.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~ 79 (106)
.|-|...-.+||+|++|+++....-..+.+++-+.|+.++++.
T Consensus 137 ~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred hcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 5778888899999999999999888888889888888888655
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Back Show alignment and domain information
Probab=92.69 E-value=0.24 Score=34.72 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~ 74 (106)
.|-|.+...+||+|++|+.+..+....+++++.+.+..
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 47788899999999999999888888888877765543
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
Back Show alignment and domain information
Probab=92.08 E-value=0.29 Score=35.36 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=34.8
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.|.|-....+|++|++|+.+..+.-..+.+++.+.|.++|.
T Consensus 132 ~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 132 DLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 46677778899999999999888777889999998888874
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides
Back Show alignment and domain information
Probab=90.96 E-value=0.54 Score=33.77 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=23.7
Q ss_pred eeEEEEcCCCcEEEee----cCCCCHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYY----GQNKKPEEVSNSIIVN 75 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f----~~~~speeiAe~Ir~~ 75 (106)
..+||+||+|+++..+ +...+.+++.+.|+.+
T Consensus 121 p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 121 RGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred eEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 3689999999999999 4444566666666553
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
>KOG1651|consensus
Back Show alignment and domain information
Probab=89.81 E-value=0.32 Score=37.12 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=29.8
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.=||+||+|..+..|.+.++|.++..+|..+|.
T Consensus 138 ~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 138 TKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred EEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 359999999999999999999999999888874
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Back Show alignment and domain information
Probab=89.09 E-value=0.84 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=21.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEE 67 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~spee 67 (106)
.|...|. .+||+||+|+++..+.....++.
T Consensus 115 ~~~~~~~-~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 115 TYDGIHR-ISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred cccCcce-EEEEECCCCEEEEEEcCCCcchh
Confidence 3544565 46999999999999875444443
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs
Back Show alignment and domain information
Probab=88.63 E-value=0.76 Score=32.72 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=30.1
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCC---------CCHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQN---------KKPEEVSNSIIVNMMK 78 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~---------~speeiAe~Ir~~l~~ 78 (106)
.|-|.+...+||+||+|+++.....+ .+.+++.+.|+.++..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 47788889999999999988664322 2346677777776643
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus
Back Show alignment and domain information
Probab=88.04 E-value=1.3 Score=31.40 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=34.4
Q ss_pred CceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 36 FWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 36 ~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
..|-|..--.++++|++|+.+..+.-..+.+++.+.|+.++.
T Consensus 70 ~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 70 DRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred HHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 358899999999999999999888766777788777777664
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
>cd02958 UAS UAS family; UAS is a domain of unknown function
Back Show alignment and domain information
Probab=87.99 E-value=1.2 Score=29.87 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=36.6
Q ss_pred ceeEecceeEEEEcC-CCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDP-EGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 37 dY~VDHSa~iYLmDP-dGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.|.+.=.-.++++|| +|+.+..+.-..+++++...|+.++..
T Consensus 71 ~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 71 SYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred HhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 367777889999999 899999999999999999999887753
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides
Back Show alignment and domain information
Probab=87.48 E-value=0.68 Score=31.23 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.4
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
..+||+|++|+++..+......+.+.+.+
T Consensus 111 p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 111 RSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred eeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 46899999999999997666556665543
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine
Back Show alignment and domain information
Probab=87.42 E-value=0.94 Score=33.83 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=20.8
Q ss_pred eEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
.+|||||+|+++..+.... +.+++...|..
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred EEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5899999999998875543 34555554443
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
>TIGR03137 AhpC peroxiredoxin
Back Show alignment and domain information
Probab=87.18 E-value=0.77 Score=33.81 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=24.6
Q ss_pred cceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 42 HTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 42 HSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
+...+||+|++|+++..+.....++.-++.|.+.|++
T Consensus 118 ~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 118 ADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred eeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 4567999999999999886544444344444444433
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif
Back Show alignment and domain information
Probab=86.59 E-value=1 Score=29.78 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=28.9
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNS 71 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~ 71 (106)
.|.|.+...+||+|++| .+..+..-.+++++.++
T Consensus 88 ~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 88 RWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred hCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 58899999999999999 77777777788888765
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []
Back Show alignment and domain information
Probab=85.54 E-value=1.8 Score=26.83 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.2
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
.+|| |+|+.+. |+.+.++.++|..|..-+.+
T Consensus 2 ~v~l--pdG~~~~-~~~g~T~~d~A~~I~~~l~~ 32 (60)
T PF02824_consen 2 RVYL--PDGSIKE-LPEGSTVLDVAYSIHSSLAK 32 (60)
T ss_dssp EEEE--TTSCEEE-EETTBBHHHHHHHHSHHHHH
T ss_pred EEEC--CCCCeee-CCCCCCHHHHHHHHCHHHHh
Confidence 4566 9999888 79999999999999887754
The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins
Back Show alignment and domain information
Probab=85.04 E-value=0.88 Score=28.32 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.4
Q ss_pred CceeEecceeEEEEcCCCcEEEeec
Q psy17586 36 FWFQVDHTIIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 36 ~dY~VDHSa~iYLmDPdGrfv~~f~ 60 (106)
..|-+.+...+||+||+|+++..+.
T Consensus 91 ~~~~~~~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 91 KAYGVRGLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred HhcCcCccceEEEECCCCcEEEEec
Confidence 4588889999999999999987653
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626
Back Show alignment and domain information
Probab=85.00 E-value=2.2 Score=32.33 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=29.9
Q ss_pred ceeEecc-eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHH
Q psy17586 37 WFQVDHT-IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMM 77 (106)
Q Consensus 37 dY~VDHS-a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~ 77 (106)
.|-|.-- ..+||+|++|+.+....-..+.+++.+ +..+|+
T Consensus 140 ~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 140 AWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred hcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHH
Confidence 4667665 445999999999999888888887755 555553
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
>PTZ00253 tryparedoxin peroxidase; Provisional
Back Show alignment and domain information
Probab=84.58 E-value=1.4 Score=32.62 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=23.6
Q ss_pred eeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
..+|||||+|+++..+....+...-++.+.+.|++.+
T Consensus 128 r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 128 RGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred EEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 5789999999999887554444433344444444443
>PRK13599 putative peroxiredoxin; Provisional
Back Show alignment and domain information
Probab=84.25 E-value=1.5 Score=33.55 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=22.6
Q ss_pred ceeEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
.-.+|||||+|+++..+-+.. +.+++...|..
T Consensus 119 ~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 119 VRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred eeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 478899999999998874333 35566655554
>PRK13190 putative peroxiredoxin; Provisional
Back Show alignment and domain information
Probab=84.21 E-value=2.9 Score=31.29 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=24.7
Q ss_pred ceeEEEEcCCCcEEEee----cCCCCHHHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYY----GQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f----~~~~speeiAe~Ir~~l 76 (106)
--.+|||||+|+++... .-+.+.+++...|..+.
T Consensus 117 ~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 117 VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred EeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 36789999999998766 44456677776666554
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A
Back Show alignment and domain information
Probab=83.98 E-value=1.5 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=26.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSI 72 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~I 72 (106)
.|-|.=+-.++++|++|+.+..+.--.+++++.+.|
T Consensus 77 ~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 77 RYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 366888899999999999998888777888887643
>PRK13189 peroxiredoxin; Provisional
Back Show alignment and domain information
Probab=83.42 E-value=1.7 Score=33.21 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
-.+|||||+|+++...-... +.+++...|..
T Consensus 127 r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 127 RAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred eEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 35899999999987765433 34555544443
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Back Show alignment and domain information
Probab=81.21 E-value=1.8 Score=32.40 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeEEEEcCCCcEEEeecCCC----CHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK----KPEEVSNSI 72 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~----speeiAe~I 72 (106)
-.+|||||+|+.+..+-... +.+++.+.|
T Consensus 120 r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 120 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred eEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 77899999999988875443 445555444
>PRK15000 peroxidase; Provisional
Back Show alignment and domain information
Probab=80.19 E-value=2.3 Score=31.95 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=22.1
Q ss_pred ceeEEEEcCCCcEEEeecCCC----CHHHHHHHHHH
Q psy17586 43 TIIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIV 74 (106)
Q Consensus 43 Sa~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~ 74 (106)
--.+|||||+|+++..+.... +.+++...|+.
T Consensus 125 ~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 125 LRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred EeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 578899999999988765544 44555544443
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 106
d1wp0a1 160
c.47.1.10 (A:138-297) Thioredoxin-like protein Sco
8e-06 d2b7ka1 169
c.47.1.10 (A:111-279) Thioredoxin-like protein Sco
6e-04
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 8e-06
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79
+ VDHTIIMYLI P+G F+DY+GQNK+ E++ SI +M Y
Sbjct: 118 DYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 160
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.2 bits (79), Expect = 6e-04
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79
+ VDH+I YL+DPEG FVD G+N + + I+ ++ Y
Sbjct: 124 DYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 106
d1wp0a1 160
Thioredoxin-like protein Sco1 (YpmQ), soluble doma
99.1 d2b7ka1 169
Thioredoxin-like protein Sco1 (YpmQ), soluble doma
98.73 d1xzoa1 172
Thioredoxin-like protein Sco1 (YpmQ), soluble doma
98.11 d2f8aa1 184
Glutathione peroxidase {Human (Homo sapiens) [TaxI
95.95 d1z5ye1 136
Thioredoxin-like protein CcmG (CycY, DsbE) {Escher
95.37 d1knga_ 144
Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr
94.58 d2b5xa1 143
thiol:disulfide oxidoreductase YkuV {Bacillus subt
94.46 d2fy6a1 143
Peptide methionine sulfoxide reductase MsrA/MsrB,
93.52 d1zzoa1 134
Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI
92.04 d1jfua_ 176
Membrane-anchored thioredoxin-like protein TlpA, s
91.25 d2cx4a1 160
Bacterioferritin comigratory protein {Archaeon Aer
90.44 d1st9a_ 137
Thiol-disulfide oxidoreductase ResA {Bacillus subt
89.92 d1lu4a_ 134
Soluble secreted antigen MPT53 {Mycobacterium tube
89.78 d1e2ya_ 167
Tryparedoxin peroxidase (thioredoxin peroxidase ho
87.67 d2zcta1 237
Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}
86.56 d1zofa1 170
Thioredoxin reductase TsaA {Helicobacter pylori [T
85.75 d2bmxa1 169
Alkyl hydroperoxide reductase AhpC {Mycobacterium
85.67 d1zyea1 158
Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [
81.55 d1uula_ 194
Tryparedoxin peroxidase (thioredoxin peroxidase ho
80.47 d1n8ja_ 186
Alkyl hydroperoxide reductase AhpC {Salmonella typ
80.07
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.4e-11 Score=82.09 Aligned_cols=57 Identities=44% Similarity=0.666 Sum_probs=48.0
Q ss_pred EEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHH
Q psy17586 22 YSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKY 79 (106)
Q Consensus 22 y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~ 79 (106)
|.++..+.. ...+++|.|+||..+||+||+|+++..|+...++++|+++|+++|++|
T Consensus 104 ~~~~~~~~~-~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk~~ 160 (160)
T d1wp0a1 104 YRVYYSPGP-KDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPY 160 (160)
T ss_dssp TTCCEEECC-CCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred hheeeeccc-CCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 666555443 233567999999999999999999999999999999999999999764
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2.2e-09 Score=70.46 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=38.6
Q ss_pred EEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 22 YSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 22 y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
|++++.+........+|.|+|+..+|||||+|+++..+....++++++++|.+.|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ 165 (169)
T d2b7ka1 109 YRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS 165 (169)
T ss_dssp TTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred hheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 444444444444456899999999999999999999999999999988888888765
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]
Probab=98.11 E-value=8.5e-07 Score=61.00 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=36.9
Q ss_pred EEEEEecccccCCCCceeEecceeEEEEcCCCcEEEeecCC--CCHHHHHHHHHHH
Q psy17586 22 YSIISTIPYLLSFIFWFQVDHTIIMYLIDPEGLFVDYYGQN--KKPEEVSNSIIVN 75 (106)
Q Consensus 22 y~v~~~~~~~~~~~~dY~VDHSa~iYLmDPdGrfv~~f~~~--~speeiAe~Ir~~ 75 (106)
|.+++..+ .++|.++||..+||+||+|+++..|... .+.++++++|+.+
T Consensus 118 ~~~~~~~~-----~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~~ 168 (172)
T d1xzoa1 118 FKAIVKKP-----EGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA 168 (172)
T ss_dssp HCCCCCCC-----SSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred eeeEEecc-----CCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence 55555433 4568899999999999999999988532 3568888888764
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0027 Score=44.67 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.7
Q ss_pred eEEEEcCCCcEEEeecCCCCHHHHHHHHHHHH
Q psy17586 45 IMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNM 76 (106)
Q Consensus 45 ~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l 76 (106)
.-||||++|+.+..|.+..+|++|.++|..+|
T Consensus 152 tKFLIdr~G~vv~rf~~~~~p~~i~~~Ie~lL 183 (184)
T d2f8aa1 152 EKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 183 (184)
T ss_dssp CEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred EEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 46999999999999999999999999998887
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.011 Score=37.80 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=37.4
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMKYE 80 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~~~ 80 (106)
.|-|.-...+||+|++|+++..+.-..+++++.+.|+.+|.+..
T Consensus 89 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~kl~ 132 (136)
T d1z5ye1 89 DLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 132 (136)
T ss_dssp HHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred hcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 36666677899999999999888767789999999999998765
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]
Probab=94.58 E-value=0.021 Score=36.75 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=34.2
Q ss_pred eeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVNMMK 78 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~l~~ 78 (106)
|-|.-.-.+||+|++|+++..+.-..+.+++.+.|+..|++
T Consensus 102 ~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l~k 142 (144)
T d1knga_ 102 WGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEK 142 (144)
T ss_dssp TTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred cCccccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 55666678999999999999887777889998888888764
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]
Probab=94.46 E-value=0.022 Score=36.72 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=32.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
.|.|.....+||+|++|+++..+.-..+.+++.+.|.++
T Consensus 105 ~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l 143 (143)
T d2b5xa1 105 AFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (143)
T ss_dssp HTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred HcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence 488889999999999999998877677778877777653
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=93.52 E-value=0.039 Score=35.13 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=31.5
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~ 74 (106)
.|-|...-.+||+|++|+++.......+.+++.+.|+.
T Consensus 101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~ 138 (143)
T d2fy6a1 101 SLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRD 138 (143)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHC
T ss_pred HcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHH
Confidence 46677788899999999999988888888888777664
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.04 E-value=0.091 Score=33.00 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=29.8
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSNSIIVN 75 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe~Ir~~ 75 (106)
.|-+...-.+||+|++|+.+. .....+.++|.+.|+.+
T Consensus 96 ~~~v~~~P~~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 96 NFGVTQQPAYAFVDPHGNVDV-VRGRMSQDELTRRVTAL 133 (134)
T ss_dssp HTTCCSSSEEEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred hcCCCccCeEEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence 477888889999999999765 44556788888887764
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]
Probab=91.25 E-value=0.12 Score=34.06 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=28.2
Q ss_pred eeEecceeEEEEcCCCcEEEeec-C-CCCHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGLFVDYYG-Q-NKKPEEVSNSIIVNM 76 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGrfv~~f~-~-~~speeiAe~Ir~~l 76 (106)
|.+...-.+||||++|+++..+. + ..+.+++.+.|+.++
T Consensus 135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~ 175 (176)
T d1jfua_ 135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 175 (176)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence 44555567899999999987653 3 235578888888765
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.44 E-value=0.28 Score=31.37 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=25.9
Q ss_pred eeEecceeEEEEcCCCcEEEeecCC-----CCHHHHHHHHHHHH
Q psy17586 38 FQVDHTIIMYLIDPEGLFVDYYGQN-----KKPEEVSNSIIVNM 76 (106)
Q Consensus 38 Y~VDHSa~iYLmDPdGrfv~~f~~~-----~speeiAe~Ir~~l 76 (106)
+.+.+...+||+|++|+++..+... .+.+++.+.+.+++
T Consensus 113 ~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~ 156 (160)
T d2cx4a1 113 LKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 156 (160)
T ss_dssp EEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHH
T ss_pred ccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 4456677899999999988765321 13456666666554
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]
Probab=89.92 E-value=0.2 Score=31.53 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=26.2
Q ss_pred ceeEecceeEEEEcCCCcEEEeecCCCCHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYGQNKKPEEVSN 70 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~~~~speeiAe 70 (106)
.|-|...-.+||+|++|+++..+.-..+++++.+
T Consensus 97 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~ 130 (137)
T d1st9a_ 97 AYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHD 130 (137)
T ss_dssp HTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHH
T ss_pred hhhccccceEEEECCCCEEEEEEECCCCHHHHHH
Confidence 4667777789999999999988776667666533
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.78 E-value=0.15 Score=32.23 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=28.8
Q ss_pred ceeEecceeEEEEcCCCcEEEeec--CCCCHHHHHHHHHH
Q psy17586 37 WFQVDHTIIMYLIDPEGLFVDYYG--QNKKPEEVSNSIIV 74 (106)
Q Consensus 37 dY~VDHSa~iYLmDPdGrfv~~f~--~~~speeiAe~Ir~ 74 (106)
.|-|.....+||+|++|+.+.... ...+.+++.+.|..
T Consensus 94 ~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 94 RYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133 (134)
T ss_dssp HTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred HcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence 477888899999999998765432 24578888888765
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]
Probab=87.67 E-value=0.18 Score=33.13 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=19.5
Q ss_pred eeEEEEcCCCcEEEeecC----CCCHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQ----NKKPEEVSNSII 73 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~----~~speeiAe~Ir 73 (106)
-.+|||||+|+++..+-. +.+.+++.+.|.
T Consensus 125 r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~ 158 (167)
T d1e2ya_ 125 RGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVE 158 (167)
T ss_dssp EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred eEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 358999999998766532 224566555443
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]
Probab=86.56 E-value=0.22 Score=35.87 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=27.1
Q ss_pred eeEEEEcCCCcEEEeecCCC----CHHHHHHHHHHHH--HHHHhhhcCCc
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK----KPEEVSNSIIVNM--MKYENLKKKSW 87 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~----speeiAe~Ir~~l--~~~~~~~~~~~ 87 (106)
-.+|||||+|+++..+-+.. +.+++...|..+= .+++.+---.|
T Consensus 121 RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ~~~~~~~~~Pa~W 170 (237)
T d2zcta1 121 RGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADW 170 (237)
T ss_dssp CEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHHHHHHHTCBBCTTT
T ss_pred eeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHhhhccCCcCCcCCC
Confidence 46899999999988776555 4556655554332 23334444456
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]
Probab=85.75 E-value=0.35 Score=32.26 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.0
Q ss_pred eeEEEEcCCCcEEEee
Q psy17586 44 IIMYLIDPEGLFVDYY 59 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f 59 (106)
-.+|||||+|+++..+
T Consensus 124 r~tfvID~~G~I~~~~ 139 (170)
T d1zofa1 124 RGAFLIDKNMKVRHAV 139 (170)
T ss_dssp EEEEEEETTTEEEEEE
T ss_pred EEEEEEcCCCeEEEEE
Confidence 4689999999987544
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.67 E-value=0.24 Score=32.63 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=13.6
Q ss_pred eeEEEEcCCCcEEEeec
Q psy17586 44 IIMYLIDPEGLFVDYYG 60 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~ 60 (106)
-.+||||++|+++-.+-
T Consensus 132 r~~fvID~~G~I~~~~~ 148 (169)
T d2bmxa1 132 RVTFIVDPNNEIQFVSA 148 (169)
T ss_dssp EEEEEECTTSBEEEEEE
T ss_pred eeEEEEcCCCEEEEEEE
Confidence 45899999999977653
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.55 E-value=0.44 Score=31.31 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=19.7
Q ss_pred eeEEEEcCCCcEEEeecCCC----CHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQNK----KPEEVSNSII 73 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~~----speeiAe~Ir 73 (106)
-.+||+||+|+++..+-... +.+++.+.|.
T Consensus 118 R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lk 151 (158)
T d1zyea1 118 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK 151 (158)
T ss_dssp EEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred cEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 35899999999986553222 4556655444
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.47 E-value=0.46 Score=32.74 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=22.3
Q ss_pred eeEEEEcCCCcEEEeecCC----CCHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQN----KKPEEVSNSIIVN 75 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~~----~speeiAe~Ir~~ 75 (106)
-.+|||||+|+++..+-.. .+.+++...|..+
T Consensus 125 R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al 160 (194)
T d1uula_ 125 RGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 160 (194)
T ss_dssp EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred EEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence 3579999999998876333 3566666665553
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]
Probab=80.07 E-value=1.8 Score=29.51 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=24.4
Q ss_pred eeEEEEcCCCcEEEeecC----CCCHHHHHHHHHHHH
Q psy17586 44 IIMYLIDPEGLFVDYYGQ----NKKPEEVSNSIIVNM 76 (106)
Q Consensus 44 a~iYLmDPdGrfv~~f~~----~~speeiAe~Ir~~l 76 (106)
-.+|||||+|+.+...-. +.+.+++.+.|..+.
T Consensus 119 r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ 155 (186)
T d1n8ja_ 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 155 (186)
T ss_dssp EEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred eeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence 568999999998766533 346778887777665
