Conserved Domains and Related Protein Families
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
98
KOG0334|consensus 997
99.78 KOG1960|consensus 531
99.06 cd02395 120
SF1_like-KH Splicing factor 1 (SF1) K homology RNA
98.28 KOG0119|consensus 554
98.12 PF00013 60
KH_1: KH domain syndrome, contains KH motifs.; Int
96.87 cd02396 65
PCBP_like_KH K homology RNA-binding domain, PCBP_l
96.53 cd02393 61
PNPase_KH Polynucleotide phosphorylase (PNPase) K
96.48 KOG1588|consensus 259
95.7 COG5176 269
MSL5 Splicing factor (branch point binding protein
94.69 cd00105 64
KH-I K homology RNA-binding domain, type I. KH bin
94.52 cd02394 62
vigilin_like_KH K homology RNA-binding domain_vigi
94.35 TIGR03665 172
arCOG04150 arCOG04150 universal archaeal KH domain
93.36 smart00322 69
KH K homology RNA-binding domain.
93.35 PRK13763 180
putative RNA-processing protein; Provisional
92.64 KOG1676|consensus 600
89.84 KOG2814|consensus 345
89.2 PRK13763 180
putative RNA-processing protein; Provisional
87.9 TIGR03665 172
arCOG04150 arCOG04150 universal archaeal KH domain
87.19 PF13014 43
KH_3: KH domain
84.15 PRK01381 99
Trp operon repressor; Provisional
80.75 PF03439 84
Spt5-NGN: Early transcription elongation factor of
80.45
>KOG0334|consensus
Back Hide alignment and domain information
Probab=99.78 E-value=6.3e-20 Score=159.93 Aligned_cols=91 Identities=45% Similarity=0.645 Sum_probs=85.0
Q ss_pred CchhHHHHhccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy17590 2 LKSPIHLLALLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELIKLSSSA 81 (98)
Q Consensus 2 lpq~~R~~vT~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~~~~~ 81 (98)
+||.+||++|+++++..|.|.++++||+||.|||+++.|.+||++|||+|||.++.+|++|+.++++.+++++.++....
T Consensus 907 ~Pq~~r~~vt~~~~L~~i~e~~~~~it~rg~f~~~gk~p~~gErklyl~ve~~~e~~vqra~~e~~r~l~e~~~~~~~~~ 986 (997)
T KOG0334|consen 907 FPQNARWRVTYKEALLRISEPTAAGITTRGKFNPPGKEPKPGERKLYLLVEGPDELSVQRAIEELERLLEEEVVNLFSSL 986 (997)
T ss_pred cchhcceeeechhhhhhccCccccceeeccccCCCCCCCCCcchhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999985444
Q ss_pred cCCCCCCceEEe
Q psy17590 82 HQSINKSRYKGV 93 (98)
Q Consensus 82 ~~~~~~GRY~V~ 93 (98)
+...+|||.|+
T Consensus 987 -~~~~~~~y~~~ 997 (997)
T KOG0334|consen 987 -QPSCKGRYLVV 997 (997)
T ss_pred -CCCccceeecC
Confidence 44449999986
>KOG1960|consensus
Back Show alignment and domain information
Probab=99.06 E-value=5.1e-11 Score=97.50 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=64.2
Q ss_pred chhHHHHhccHHHHHHhHhhhcceeeeeceeeCCCCCC-CCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLALLGEALAQISEYSEAGITVRGIYIPPGKNP-PEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 3 pq~~R~~vT~~~tl~~I~e~Tga~It~KG~y~ppg~~p-~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
|+.+|+.+|.+.++++|.++||+.|.+||+|.++..++ .+++++||+||.|.|.+.|++|++.|+-+...
T Consensus 103 ~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~Ei~~~Ai~RIkgv~~~ 173 (531)
T KOG1960|consen 103 LQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTAEITSKAIERIKGVFMQ 173 (531)
T ss_pred cccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccHHHHHHHHhhCccceee
Confidence 78899999999999999999999999999999999875 46889999999999999999999999954443
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)
Back Show alignment and domain information
Probab=98.28 E-value=2.9e-06 Score=58.89 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=47.9
Q ss_pred cHHHHHHhHhhhcceeeeeceee--CCCCC-----CC--CCCCceEEEEEeCC--HHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYI--PPGKN-----PP--EGERKLFLAIESTN--ELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~--ppg~~-----p~--~ge~kLYL~Ieg~t--e~~V~~A~~eIk~ii~e 72 (98)
.+.|+.+|+++|||.|.++|.-- ..++. |. ..+-+||++|+|++ .+++++|+..|+.++.+
T Consensus 24 gG~tiK~i~~eTg~kI~Irg~gs~~~~~~~~~~~~~~~~~~~eplhV~I~a~~~~~e~~~~A~~~I~~ll~~ 95 (120)
T cd02395 24 RGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHLNEPLHVLITAETPPEEALAKAVEAIEELLKP 95 (120)
T ss_pred CChHHHHHHHHHCCEEEEecCcccccccccccccCcccccCCCCcEEEEEeCCcHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999998521 11111 11 13467999999999 99999999999999984
Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
>KOG0119|consensus
Back Show alignment and domain information
Probab=98.12 E-value=7e-06 Score=68.79 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=50.1
Q ss_pred cHHHHHHhHhhhcceeeeecee-eCCCC------CC-CCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIY-IPPGK------NP-PEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y-~ppg~------~p-~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.++||+++.++|||.|.+||.= +-.|+ .. ..-+-+||.+|++.|++.|++|++.|+.+|.+++
T Consensus 162 RG~TqK~lE~etgAKI~IRGkgSvkEgk~~~~d~~~~~~~~epLH~~Isadt~eki~~Ai~vienli~~av 232 (554)
T KOG0119|consen 162 RGNTQKRLERETGAKIAIRGKGSVKEGKGRSDDLSYIPKENEPLHCLISADTQEKIKKAIAVIENLIQSAV 232 (554)
T ss_pred CccHHHHHHHHhCCeEEEeccccccccccCCcccccccccccceeEEEecchHHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999932 22222 01 1134889999999999999999999999999743
>PF00013 KH_1: KH domain syndrome, contains KH motifs
Back Show alignment and domain information
Probab=96.87 E-value=0.0048 Score=36.62 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=36.5
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEI 66 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eI 66 (98)
-++.++.+|.+.|||.|.+... + ..-.+.|.| +.+.|++|.++|
T Consensus 17 ~~G~~i~~I~~~t~~~I~i~~~----------~-~~~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 17 KKGSNIKEIEEETGVKIQIPDD----------D-ERDIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp GGGHHHHHHHHHHTSEEEEEST----------T-EEEEEEEEE-SHHHHHHHHHHH
T ss_pred CCCCcHHHhhhhcCeEEEEcCC----------C-CcEEEEEEe-CHHHHHHHHhhC
Confidence 3678999999999999998332 2 445889999 999999999876
; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like
Back Show alignment and domain information
Probab=96.53 E-value=0.014 Score=35.60 Aligned_cols=48 Identities=31% Similarity=0.309 Sum_probs=35.8
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEI 66 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eI 66 (98)
.+++++.+|.+.|||.|++- +...+.+.++ -+.|+|. .+.|++|+.+|
T Consensus 17 ~~G~~i~~i~~~tga~I~i~-----~~~~~~~~~r--~v~I~G~-~~~v~~A~~~I 64 (65)
T cd02396 17 KGGSTIKEIREETGAKIRVS-----KSVLPGSTER--VVTISGK-PSAVQKALLLI 64 (65)
T ss_pred CCcHHHHHHHHHHCCEEEEc-----CCCCCCCCce--EEEEEeC-HHHHHHHHHhh
Confidence 36789999999999999983 3332334444 3788887 78889998876
Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)
Back Show alignment and domain information
Probab=96.48 E-value=0.0084 Score=36.52 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEIT 67 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk 67 (98)
.++++.+|++.|||.|.+ +. .+ .+.|.|++.++|+.|+.+|+
T Consensus 20 gG~~ik~I~~~tg~~I~i-----~~-----~g----~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 20 GGKTIKKIIEETGVKIDI-----ED-----DG----TVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred CchHHHHHHHHHCCEEEe-----CC-----CC----EEEEEeCCHHHHHHHHHHhC
Confidence 678999999999999975 22 12 49999999999999999873
PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
>KOG1588|consensus
Back Show alignment and domain information
Probab=95.70 E-value=0.018 Score=45.01 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=45.4
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCC------CC----CCCceEEEEEeCC-----HHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNP------PE----GERKLFLAIESTN-----ELAVSKAKVEITRLIK 71 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p------~~----ge~kLYL~Ieg~t-----e~~V~~A~~eIk~ii~ 71 (98)
++.|+.++.++|||.|.+||+--=..+.- .+ =+.+||++||... ...+..|+++|+.+|.
T Consensus 116 rGnSlkrLe~eTgCki~IrGrgSmrD~~KEE~lR~~p~yeHL~epLHVlIe~~~p~~ea~~rl~~AleeI~klL~ 190 (259)
T KOG1588|consen 116 RGNSLKRLEEETGCKIMIRGRGSMRDKAKEEELRGDPGYEHLNEPLHVLIETEAPPAEAYARLAYALEEIKKLLV 190 (259)
T ss_pred CcchHHHHHHHHCCeEEEecCCcccchHHHHHhhcCcchHHhCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhcC
Confidence 57799999999999999999865444321 11 1478999999644 3567789999999874
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]
Back Show alignment and domain information
Probab=94.69 E-value=0.037 Score=42.78 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=52.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCC--------CCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPE--------GERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~--------ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.+.||.++.+-|+|.|-+||.|--..-+..+ -+-.|+-+|++.++..+.+++..+..+|.++.
T Consensus 172 RG~Tlk~le~~s~akIaIRG~gsvKegk~ssd~p~~~~N~e~~lhcLI~adsedki~~~ik~~~n~I~~a~ 242 (269)
T COG5176 172 RGSTLKQLERISRAKIAIRGSGSVKEGKISSDTPESLKNAEAVLHCLIEADSEDKICRLIKSQLNAIREAR 242 (269)
T ss_pred CcchHHHHHHHhCCeEEEecccccccCcccccCchhhhhhHHhHHHHhhcchhhhHHHHHHHHHHHHHHHh
Confidence 4689999999999999999998655433211 35789999999999999999999988888754
>cd00105 KH-I K homology RNA-binding domain, type I
Back Show alignment and domain information
Probab=94.52 E-value=0.26 Score=28.83 Aligned_cols=47 Identities=30% Similarity=0.319 Sum_probs=34.6
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEI 66 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eI 66 (98)
.++.++.+|.+.|||.|.+. +... ++..--+.|.|+ .+.|..|..+|
T Consensus 17 ~~G~~i~~I~~~s~~~I~i~-----~~~~---~~~~~~v~i~G~-~~~v~~a~~~i 63 (64)
T cd00105 17 KGGSTIKEIREETGAKIKIP-----DSGS---GSEERIVTITGT-PEAVEKAKELI 63 (64)
T ss_pred CCCHHHHHHHHHHCCEEEEc-----CCCC---CCCceEEEEEcC-HHHHHHHHHHh
Confidence 47889999999999999854 3221 233344778888 78888888876
KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is folded into a beta alpha alpha beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include N-terminal extension and type I KH domains (e.g. hnRNP K) contain C-terminal extension.
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like
Back Show alignment and domain information
Probab=94.35 E-value=0.11 Score=30.85 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=33.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEI 66 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eI 66 (98)
++.++.+|.+.|||.|.+- +.. +..=.+.|.|+ ++.|..|+.+|
T Consensus 18 ~G~~i~~i~~~~g~~I~i~-----~~~-----~~~~~v~I~G~-~~~v~~A~~~i 61 (62)
T cd02394 18 KGSNIRKIMEETGVKIRFP-----DPG-----SKSDTITITGP-KENVEKAKEEI 61 (62)
T ss_pred CCCcHHHHHHHhCCEEEcC-----CCC-----CCCCEEEEEcC-HHHHHHHHHHh
Confidence 4689999999999998653 322 22334789999 77999999887
The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein
Back Show alignment and domain information
Probab=93.36 E-value=0.26 Score=35.66 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=39.5
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+++|+..|++.|||.|.+.| . .+.|.| +.+.++.|...|.++++.
T Consensus 106 ~~G~t~~~ie~~t~~~i~i~~-------------~--~v~i~G-~~~~~~~A~~~i~~li~~ 151 (172)
T TIGR03665 106 EGGKTRRIIEELTGVSISVYG-------------K--TVGIIG-DPEQVQIAREAIEMLIEG 151 (172)
T ss_pred CCcHHHHHHHHHHCCeEEEcC-------------C--EEEEEC-CHHHHHHHHHHHHHHHcC
Confidence 467899999999999998864 1 488999 999999999999998843
This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
>smart00322 KH K homology RNA-binding domain
Back Show alignment and domain information
Probab=93.35 E-value=0.45 Score=27.12 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=37.6
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
.++.++.+|.+.|||.|.+.+.-. ..--+.|.|+ ...+..|...|.+.+
T Consensus 20 ~~G~~i~~i~~~~~~~i~~~~~~~----------~~~~v~i~g~-~~~v~~a~~~i~~~~ 68 (69)
T smart00322 20 KGGSTIKKIEEETGVKIDIPEDGS----------EERVVEITGP-PENVEKAAELILEIL 68 (69)
T ss_pred CCchHHHHHHHHHCCEEEECCCCC----------CccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 478899999999999998842111 3344888898 899999999888765
>PRK13763 putative RNA-processing protein; Provisional
Back Show alignment and domain information
Probab=92.64 E-value=0.44 Score=34.74 Aligned_cols=46 Identities=28% Similarity=0.268 Sum_probs=38.6
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+++++..|++.|||.|.+.|. . +.|.| +.+.++.|...|++++..
T Consensus 112 ~~G~~~k~ie~~t~~~i~i~~~-------------~--v~i~G-~~~~~~~A~~~I~~li~g 157 (180)
T PRK13763 112 EGGKTRRIIEELTGVDISVYGK-------------T--VAIIG-DPEQVEIAREAIEMLIEG 157 (180)
T ss_pred CCcHHHHHHHHHHCcEEEEcCC-------------E--EEEEe-CHHHHHHHHHHHHHHHcC
Confidence 4678999999999999998642 1 67778 899999999999998853
>KOG1676|consensus
Back Show alignment and domain information
Probab=89.84 E-value=1.2 Score=38.66 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=42.7
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
.+|++++|+.+|||.|+. .|+.. |..-||.| .|-|+ ...+.+|.+.|++||.+...
T Consensus 248 gGE~IKklq~etG~KIQf----kpDd~-p~speR~~--~IiG~-~d~ie~Aa~lI~eii~~~~~ 303 (600)
T KOG1676|consen 248 GGEMIKKLQNETGAKIQF----KPDDD-PSSPERPA--QIIGT-VDQIEHAAELINEIIAEAEA 303 (600)
T ss_pred CchHHHHHhhccCceeEe----ecCCC-CCCcccee--eeecC-HHHHHHHHHHHHHHHHHHhc
Confidence 579999999999999964 45554 34446664 56674 67899999999999997553
>KOG2814|consensus
Back Show alignment and domain information
Probab=89.20 E-value=1.4 Score=35.87 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=48.2
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
+++.|+.+|.++|+|.|.+ |.+++.+=.+-|+|.+..+|.+|...|.-+|.+.-
T Consensus 74 ~~g~trkkle~Etq~~i~l----------p~p~~n~~~i~i~~~~~~~V~~a~~Ri~~~ids~r 127 (345)
T KOG2814|consen 74 KQGKTRKKLEEETQTNIFL----------PRPNTNKEEIKIIGISRNCVIQALERIAKLIDSDR 127 (345)
T ss_pred ccchHHHHHHHhhccceEc----------cCCCCCcceEEEeehhHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999865 66778888999999999999999999999988754
>PRK13763 putative RNA-processing protein; Provisional
Back Show alignment and domain information
Probab=87.90 E-value=2.2 Score=31.09 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=39.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEE---eCCHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIE---STNELAVSKAKVEITRLIK 71 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ie---g~te~~V~~A~~eIk~ii~ 71 (98)
.++++..|++.|||.|.+--. +. .+.|. +.+..++++|+..|+.+..
T Consensus 21 gGk~Ik~I~e~tg~~I~i~~~-----------~g--~V~I~~~~~~d~~~i~kA~~~I~ai~~ 70 (180)
T PRK13763 21 KGETKKEIEERTGVKLEIDSE-----------TG--EVIIEPTDGEDPLAVLKARDIVKAIGR 70 (180)
T ss_pred chhHHHHHHHHHCcEEEEECC-----------CC--eEEEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 468999999999999998631 12 45677 8999999999999999887
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein
Back Show alignment and domain information
Probab=87.19 E-value=2.5 Score=30.51 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=39.7
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEE--EeCCHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAI--ESTNELAVSKAKVEITRLIK 71 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~I--eg~te~~V~~A~~eIk~ii~ 71 (98)
..++++..|++.|||.|.+-- ++. .+.| .+.+..++++|+..|+.+..
T Consensus 15 ~gG~~Ik~I~~~tgv~I~Id~-----------~~g--~V~I~~~t~d~~~i~kA~~~I~~i~~ 64 (172)
T TIGR03665 15 KGGETKKEIEERTGVKLDIDS-----------ETG--EVKIEEEDEDPLAVMKAREVVKAIGR 64 (172)
T ss_pred CchhHHHHHHHHhCcEEEEEc-----------CCc--eEEEecCCCCHHHHHHHHHHHHHHHc
Confidence 468999999999999999862 112 4666 78999999999999999776
This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
>PF13014 KH_3: KH domain
Back Show alignment and domain information
Probab=84.15 E-value=2.9 Score=23.17 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=16.2
Q ss_pred cHHHHHHhHhhhcceeee
Q psy17590 12 LGEALAQISEYSEAGITV 29 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~ 29 (98)
++.++.+|+++|||.|.+
T Consensus 9 ~G~~I~~I~~~tg~~I~i 26 (43)
T PF13014_consen 9 GGSTIKEIREETGAKIQI 26 (43)
T ss_pred CChHHHHHHHHhCcEEEE
Confidence 578999999999999976
>PRK01381 Trp operon repressor; Provisional
Back Show alignment and domain information
Probab=80.75 E-value=0.73 Score=31.32 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHhcc-----HHHHHHhHhhhcceeee--ece
Q psy17590 6 IHLLALL-----GEALAQISEYSEAGITV--RGI 32 (98)
Q Consensus 6 ~R~~vT~-----~~tl~~I~e~Tga~It~--KG~ 32 (98)
.||.|.+ .-++.+|.+.+|+||++ ||.
T Consensus 43 ~R~~I~~~L~~g~~sQREIa~~lGvSiaTITRgs 76 (99)
T PRK01381 43 TRVRIVEELLRGELSQREIKQELGVGIATITRGS 76 (99)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHhCCceeeehhhH
Confidence 5888887 35999999999999987 775
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain
Back Show alignment and domain information
Probab=80.45 E-value=1.4 Score=28.32 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=24.5
Q ss_pred eeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHH
Q psy17590 27 ITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITR 68 (98)
Q Consensus 27 It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ 68 (98)
+.+.-.|.|++ -|=|++||+.++.+|.+|+..|..
T Consensus 32 l~I~Si~~~~~-------lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 32 LNIYSIFAPDS-------LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ----EEEE-TT-------STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCC-------CceEEEEEeCCHHHHHHHHhcccc
Confidence 77788888877 345999999999999999987653
The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Homologous Structure Templates
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
ID Alignment Graph Length
Definition
Probability Query 98
2yqr_A 119
KIAA0907 protein; structure genomics, KH domain, s
98.79 1k1g_A 131
SF1-BO isoform; splicing, branch point sequence, p
98.69 2bl5_A 140
MGC83862 protein, quaking protein; STAR proteins,
98.12 2opv_A 85
KHSRP protein; KH domain, RNA binding protein, KSR
97.77 1dtj_A 76
RNA-binding neurooncological ventral antigen 2; KH
97.75 1zzk_A 82
Heterogeneous nuclear ribonucleoprotein K; KH domi
97.73 1ec6_A 87
RNA-binding protein NOVA-2; KH domain, alpha-beta
97.71 2p2r_A 76
Poly(RC)-binding protein 2; protein-DNA complex, R
97.7 1j5k_A 89
Heterogeneous nuclear ribonucleoprotein K; single-
97.57 2hh2_A 107
KH-type splicing regulatory protein; KH-RNA bindin
97.56 1x4n_A 92
FAR upstream element binding protein 1; KH domain,
97.48 2axy_A 73
Poly(RC)-binding protein 2; protein-DNA complex, D
97.45 2hh3_A 106
KH-type splicing regulatory protein; KH-RNA bindin
97.4 1wvn_A 82
Poly(RC)-binding protein 1; KH domain, RNA binding
97.34 2cte_A 94
Vigilin; K homology type I domain, RNA-binding, ce
97.32 1we8_A 104
Tudor and KH domain containing protein; structural
97.31 1x4m_A 94
FAR upstream element binding protein 1; KH domain,
97.29 2ctj_A 95
Vigilin; K homology type I domain, RNA-binding, ce
97.24 2jzx_A 160
Poly(RC)-binding protein 2; PCBP2, KH domains, RNA
97.17 3krm_A 163
Insulin-like growth factor 2 mRNA-binding protein
97.04 1vig_A 71
Vigilin; RNA-binding protein, ribonucleoprotein; N
96.94 2ctk_A 104
Vigilin; K homology type I domain, RNA-binding, ce
96.94 2ctl_A 97
Vigilin; K homology type I domain, RNA-binding, ce
96.88 2ctm_A 95
Vigilin; K homology type I domain, RNA-binding, ce
96.53 2jvz_A 164
KH type-splicing, FAR upstream element-binding pro
96.49 1j4w_A 174
FUSE binding protein; single-stranded DNA binding
96.41 1j4w_A 174
FUSE binding protein; single-stranded DNA binding
96.41 2dgr_A 83
Ring finger and KH domain-containing protein 1; st
96.4 2jvz_A 164
KH type-splicing, FAR upstream element-binding pro
96.26 2anr_A 178
Neuro-oncological ventral antigen 1; protein-RNA c
96.11 2jzx_A 160
Poly(RC)-binding protein 2; PCBP2, KH domains, RNA
96.1 2anr_A 178
Neuro-oncological ventral antigen 1; protein-RNA c
95.72 3krm_A 163
Insulin-like growth factor 2 mRNA-binding protein
95.47 2ctf_A 102
Vigilin; K homology type I domain, RNA-binding, ce
94.27 2qnd_A 144
FMR1 protein; KH domain, eukaryotic KH domains, ta
94.12 2cpq_A 91
FragIle X mental retardation syndrome related prot
93.49 3n89_A 376
Defective in GERM LINE development protein 3, ISO;
92.93 2e3u_A 219
PH-DIM2P, hypothetical protein PH1566; PRE-ribosom
88.34 2e3u_A 219
PH-DIM2P, hypothetical protein PH1566; PRE-ribosom
87.77 3u1k_A 630
Polyribonucleotide nucleotidyltransferase 1, MITO;
87.52 1wjw_A 112
Phosphoacetylglucosamine mutase; carbohydrate meta
86.67
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Back Hide alignment and structure
Probab=98.79 E-value=2.8e-08 Score=67.98 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=51.4
Q ss_pred ccHHHHHHhHhhhcceeeeece---eeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGI---YIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~---y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
-.+.++.+|+++|||.|.++|+ ++.+.... ..+-+||++|+|.+.+++++|+.+|+.|+.+--.
T Consensus 36 pgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~-e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v~~ 102 (119)
T 2yqr_A 36 PGCSYLQHIQIETGAKVFLRGKGSGCIEPASGR-EAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHA 102 (119)
T ss_dssp GGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSS-CCSSBCEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHCCEEEEecCCcccccccccc-ccCCCcEEEEEeCCHHHHHHHHHHHHHHhhchHH
Confidence 3578999999999999999976 33333322 2346899999999999999999999999986443
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=98.69 E-value=3.8e-08 Score=68.09 Aligned_cols=65 Identities=23% Similarity=0.275 Sum_probs=50.7
Q ss_pred HhccHHHHHHhHhhhcceeeeeceeeC-CCCC-CC------CCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 9 LALLGEALAQISEYSEAGITVRGIYIP-PGKN-PP------EGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 9 ~vT~~~tl~~I~e~Tga~It~KG~y~p-pg~~-p~------~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.=..+.|+.+|+++|||.|.++|..-- .++. .. ..+.+||++|+|++++.+++|+.+|+.++.+.
T Consensus 28 IGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 28 IGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQG 100 (131)
T ss_dssp HCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTTT
T ss_pred ECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 336789999999999999999885321 1111 11 12468999999999999999999999999763
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Back Show alignment and structure
Probab=98.12 E-value=3.8e-06 Score=58.88 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=46.3
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCC------------CC--CCCCceEEEEEeCCHH-----HHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKN------------PP--EGERKLFLAIESTNEL-----AVSKAKVEITRLIK 71 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~------------p~--~ge~kLYL~Ieg~te~-----~V~~A~~eIk~ii~ 71 (98)
-.+.|+.+|+++|||.|.+||. |+. |. ..+-+||++|+|.+.+ .+++|+++|+.++.
T Consensus 25 PrG~t~K~ie~eTg~kI~IrGk----GS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 25 PRGLTAKQLEAETGCKIMVRGK----GSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp TTHHHHHHHHHHHSEEEEEEST----TSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSS
T ss_pred CCcchHHHHHHHHCCeEEEecC----CCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCC
Confidence 3789999999999999999985 321 11 1346799999998764 89999999999986
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Back Show alignment and structure
Probab=97.77 E-value=6.4e-05 Score=47.41 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=41.8
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+-. .+..+...++ .+.|.| +.++|++|+..|++++.|
T Consensus 32 gG~~Ik~I~~~tga~I~i~~----~~~~~~~~er--~v~I~G-~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 32 GGETIKQLQERAGVKMILIQ----DGSQNTNVDK--PLRIIG-DPYKVQQACEMVMDILRE 85 (85)
T ss_dssp TTHHHHHHHHHHTCEEEECS----SSCSSTTSCE--EEEEEE-CHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCEEEEcC----CCCCCCCCce--EEEEEe-CHHHHHHHHHHHHHHhcC
Confidence 57899999999999999854 2222333445 466789 999999999999998753
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Back Show alignment and structure
Probab=97.75 E-value=0.0001 Score=45.16 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=42.7
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.+.++.+|++.|||.|.+-. ...+.++...-.+.|.|. .++|++|+.+|.+++.|+
T Consensus 21 gG~~Ik~I~~~tga~I~i~~-----~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYE 76 (76)
T ss_dssp TTHHHHHHHHHHCCEEEECC-----TTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC--
T ss_pred CchHHHHHHHHhCCEEEECc-----CCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcC
Confidence 47899999999999998742 222334455567888997 889999999999988663
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Back Show alignment and structure
Probab=97.73 E-value=0.0002 Score=44.81 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=42.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+.. +.++...-.+.|.| +.++|++|+.+|.+++.+.
T Consensus 25 gG~~Ik~I~~~tga~I~i~~--------~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 25 GGQRIKQIRHESGASIKIDE--------PLEGSEDRIITITG-TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp GGHHHHHHHHHHCCEEEECC--------TTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHCCEEEEcC--------CCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999853 11233334688899 5999999999999998863
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=97.71 E-value=0.00036 Score=43.99 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=47.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELIKL 77 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~ 77 (98)
.++++.+|++.|||.|.+-. ...+.++...-.+.|.|. .++|+.|+.+|.+++.+.-.+-
T Consensus 21 gG~~Ik~I~~~tga~I~I~~-----~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 21 GGKTLVEYQELTGARIQISK-----KGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp GGHHHHHHHHHHCCEEEECC-----TTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHhCCEEEEcc-----CCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccc
Confidence 47899999999999998842 222334455567888997 8899999999999999876654
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Back Show alignment and structure
Probab=97.70 E-value=0.00011 Score=45.24 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=42.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.+.++.+|++.|||.|.+-. +.++...-.+.|.|. .++|++|+.+|.+++.++
T Consensus 23 gG~~Ik~I~~~tga~I~i~~--------~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 23 QGAKINEIRQMSGAQIKIAN--------PVEGSTDRQVTITGS-AASISLAQYLINVRLSSE 75 (76)
T ss_dssp GGHHHHHHHHHHCCEEEECC--------CCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHCCEEEEcC--------CCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHcc
Confidence 47899999999999999964 123334446788997 999999999999998764
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Back Show alignment and structure
Probab=97.57 E-value=0.00034 Score=44.39 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+... .++...-.+.|.|. .++|++|+.+|.+++.+.
T Consensus 32 gG~~Ik~I~~~tga~I~I~~~--------~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 32 GGQRIKQIRHESGASIKIDEP--------LEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp GGHHHHHHHHHTCCEEEECSC--------CSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHhCCeEEecCC--------CCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 578999999999999998531 12333346778897 899999999999999874
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Back Show alignment and structure
Probab=97.56 E-value=0.00012 Score=48.27 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=44.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.++++.+|++.|||.|.+... ..+.++..--.+.|.| +.++|++|+.+|.+++.+..
T Consensus 25 gG~~Ik~I~~~TGa~I~I~~~-----~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 25 GGENVKAINQQTGAFVEISRQ-----LPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp TTCHHHHHHHHSSSEEEECCC-----CCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCSCC
T ss_pred CcHHHHHHHHHhCCEEEEcCc-----cCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhccc
Confidence 468999999999999998542 1222333445688899 99999999999999988754
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Back Show alignment and structure
Probab=97.48 E-value=0.00043 Score=44.23 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=42.0
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|+++|||.|.+... .++...-.+.|.|. .++|++|+.+|.+++.+
T Consensus 33 gG~~Ik~I~~~tga~I~I~~~--------~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 33 GGEQISRIQQESGCKIQIAPD--------SGGLPERSCMLTGT-PESVQSAKRLLDQIVEK 84 (92)
T ss_dssp SSHHHHHHHHHSCCEEEECSC--------CTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCEEEEcCC--------CCCCCccEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 478999999999999998532 12344456788897 89999999999999876
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Back Show alignment and structure
Probab=97.45 E-value=0.00058 Score=41.88 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=41.0
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+-.. +.+.--+.|.|. .++|++|+.+|.++|.|
T Consensus 23 gG~~Ik~I~~~tga~I~i~~~----------~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 23 KGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp GGHHHHHHHHHHCCEEEECSS----------CCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHCCEEEEecC----------CCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 468999999999999998421 233345789998 99999999999999976
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Back Show alignment and structure
Probab=97.40 E-value=0.00069 Score=44.75 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=41.4
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|+++|||.|.+... . ++.+--.+.|.|. .++|++|+.+|++++.+.
T Consensus 29 gG~~Ik~I~~~TGakI~I~~~-----~---~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 29 SGEMIKKIQNDAGVRIQFKQD-----D---GTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp TTHHHHHHHHHHTCEEEECSS-----C---SSSSEEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCcEEEEecC-----C---CCCceeEEEEEeC-HHHHHHHHHHHHHHHhcc
Confidence 468999999999999999531 1 1223445778886 899999999999998864
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=97.34 E-value=0.00044 Score=43.10 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=40.8
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+-.. .++...-.+.|.|.. ++|++|+.+|.+++.++
T Consensus 24 gG~~Ik~I~~~sga~I~i~~~--------~~~~~~r~v~I~G~~-~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 24 QGANINEIRQMSGAQIKIANP--------VEGSSGRQVTITGSA-ASISLAQYLINARLSSE 76 (82)
T ss_dssp GGHHHHHHHHHHCCEEEECCC--------CTTCSEEEEEEEECH-HHHHHHHHHHHHHTC--
T ss_pred CchhHHHHHHHhCCEEEEecC--------CCCCCceEEEEEcCH-HHHHHHHHHHHHHHHhh
Confidence 468999999999999998542 133334457788965 99999999999998876
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=97.32 E-value=0.00086 Score=43.04 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=44.8
Q ss_pred hhHHHHhcc-HHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 4 SPIHLLALL-GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 4 q~~R~~vT~-~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
+.++.-|=+ +.++.+|+++|||.|.+- +. ++..=.+.|.|+ .+.|++|+.+|..++.+..
T Consensus 26 ~~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~~-----~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 26 EHHRFVIGKNGEKLQDLELKTATKIQIP-----RP-----DDPSNQIKITGT-KEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp TTHHHHHCSSSCHHHHHHHHTTCCCBCC-----CT-----TSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHeeeeECCCChhHHHHHHHHCCEEEeC-----CC-----CCCCCeEEEEEC-HHHHHHHHHHHHHHhhccc
Confidence 344555544 589999999999999982 11 111126788998 9999999999999998744
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Back Show alignment and structure
Probab=97.31 E-value=0.0018 Score=42.15 Aligned_cols=57 Identities=25% Similarity=0.147 Sum_probs=41.9
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
.++++.+|++.|||.|.+-..- ...+..--.+.|.|..+ .|++|+.+|.+++.+.-.
T Consensus 33 gG~~Ik~I~~~tga~I~I~~~~------~~~~~~~~~V~I~G~~~-~v~~A~~~I~~~i~e~~~ 89 (104)
T 1we8_A 33 GGETIRSICKASGAKITCDKES------EGTLLLSRLIKISGTQK-EVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp TSHHHHHHHHHHCCEEEECCSS------CCSSSSEEEEEEEEEHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEEecCC------CCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhChH
Confidence 4789999999999999985321 11111234577889877 799999999999976543
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Back Show alignment and structure
Probab=97.29 E-value=0.00031 Score=45.12 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=40.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+-.. +......++ .+.|.| +.+.|++|+.+|.+++.+
T Consensus 33 gG~~Ik~I~~~tga~I~I~~~----~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 33 GGETIKQLQERAGVKMVMIQD----GPQNTGADK--PLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp SSSHHHHHHHHHTSEEEECCS----CCCSSCSCE--EEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHCCeEEecCC----CCCCCCCce--EEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 578999999999999988421 111112333 467889 888999999999999864
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=97.24 E-value=0.001 Score=43.16 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=44.8
Q ss_pred chhHHHHhcc-HHHHHHhHhhh-cceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLALL-GEALAQISEYS-EAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 3 pq~~R~~vT~-~~tl~~I~e~T-ga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
|...|..+-. +.++.+|+|+| ||.|.+ |+ +|...-.+.|.|+++ +|++|+.+|+.++.+
T Consensus 25 ~~~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~-----~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 25 AKLHNSLIGTKGRLIRSIMEECGGVHIHF-----PV-----EGSGSDTVVIRGPSS-DVEKAKKQLLHLAEE 85 (95)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC-----TTTTCCEEEEESCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCCCchhHHHHHHHcCCCEEEe-----CC-----CCCCcceEEEEcCHH-HHHHHHHHHHHHHhh
Confidence 3445555544 48999999999 999965 32 233344688999988 999999999999876
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Back Show alignment and structure
Probab=97.17 E-value=0.0014 Score=44.65 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=42.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-+..+| ..++ =.+.|.| +.++|++|+.+|.+++.|
T Consensus 107 gG~~Ik~i~~~tga~I~i~~~~~~-----~~~~--~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 107 GGCKIKEIRESTGAQVQVAGDMLP-----NSTE--RAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp GGHHHHHHHHHHSSEECCCCCCST-----TCCE--EEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCeEEECCCCCC-----CCCc--eEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 578999999999999998654322 2233 4578899 899999999999999876
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Back Show alignment and structure
Probab=97.04 E-value=0.0037 Score=42.68 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=41.9
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-. ...|.. ...-.+.|.| +.++|++|..+|.+++.+
T Consensus 103 gG~~I~~i~~~tga~I~i~~-----~~~~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 103 GGKTVNELQNLTAAEVVVPR-----DQTPDE-NDQVIVKIIG-HFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp GGHHHHHHHHHHCCEEECCT-----TCCCCT-TSEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhCCeEEECC-----CCCCCC-CCceEEEEEe-CHHHHHHHHHHHHHHHHH
Confidence 47899999999999997743 222222 2334688999 789999999999999986
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Back Show alignment and structure
Probab=96.94 E-value=0.0022 Score=39.14 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=41.5
Q ss_pred chhHHHHh-ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLA-LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 3 pq~~R~~v-T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
|..+|.-+ ..+.++.+|+++|||.|.+- + ++++.=.+.|.|+. ++|++|+.+|..++
T Consensus 13 ~~~ig~iIG~gG~~I~~I~e~tg~~I~i~-----~-----~g~~~~~V~I~G~~-~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 13 HKFHRHLIGKSGANINRIKDQYKVSVRIP-----P-----DSEKSNLIRIEGDP-QGVQQAKRELLELA 70 (71)
T ss_dssp SSHHHHHTCSSCCHHHHHHHHTCCEEECC-----C-----CCSSSEEEEEEESS-HHHHHHHHHHHHTC
T ss_pred HHHhhhhcCCCCccHHHHHHHHCCEEEEC-----C-----CCCcccEEEEEcCH-HHHHHHHHHHHHHh
Confidence 34455555 45789999999999999762 2 12233367889994 78999999998763
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=96.94 E-value=0.0032 Score=41.24 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=44.5
Q ss_pred hhHHHHhc-cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 4 SPIHLLAL-LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 4 q~~R~~vT-~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
..+|.-|= .+.++.+|+++|||.|.+- +++. +. =.+.|.|+. ++|++|+.+|..++.+.-.
T Consensus 26 ~~ig~IIG~gG~~Ir~I~eetg~~I~I~----~~g~----~~--~~V~I~G~~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 26 DLHRYVIGQKGSGIRKMMDEFEVNIHVP----APEL----QS--DIIAITGLA-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp HHHHHHHCSSSHHHHHHHHHTCCEEECC----CTTT----TC--CEEEEEECH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHccceeCCCchHHHHHHHHHCCEEEec----CCCC----Cc--ceEEEEcCH-HHHHHHHHHHHHHHhhHHH
Confidence 34444443 4899999999999999872 1222 11 268888985 8999999999999987543
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=96.88 E-value=0.0034 Score=40.57 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=43.3
Q ss_pred hHHHHhc-cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 5 PIHLLAL-LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 5 ~~R~~vT-~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++.-|= .+.++.+|++.|||.|.+- +...+.. ..-.+.|.|+ .+.|++|+.+|..++.+
T Consensus 27 ~ig~IIGkgG~~Ik~I~~etg~~I~i~-----~~g~~~~--~~~~V~I~G~-~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 27 YHPKIIGRKGAVITQIRLEHDVNIQFP-----DKDDGNQ--PQDQITITGY-EKNTEAARDAILRIVGE 87 (97)
T ss_dssp THHHHSCSSSCHHHHHHHHHTCEEECC-----CTTTCSS--CSSEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCchhHHHHHHHHCCEEEec-----CCCCCCC--CccEEEEEeC-HHHHHHHHHHHHHHHHH
Confidence 3333343 3789999999999999873 2222222 3345778898 88999999999999876
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=96.53 E-value=0.0084 Score=38.61 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=41.0
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
.+.++.+|++.|||.|.+ |+.. +...-.+.|.|+ .+.|++|+.+|..++.|...
T Consensus 35 gG~~Ir~I~e~tg~~I~i-----~~~g----~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 35 RGKAIRKIMDEFKVDIRF-----PQSG----APDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp SSCHHHHHHHHHTCEEEC-----CCTT----CSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHCCeEEe-----cCCC----CCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999988 2211 112335778898 68999999999999887553
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Back Show alignment and structure
Probab=96.49 E-value=0.0061 Score=41.33 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=40.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+- +.+ +.++..--.+.|.| +.+.|++|+..|.+++.+
T Consensus 20 ~G~~Ik~i~~~tg~~I~i~----~~~--~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e 73 (164)
T 2jvz_A 20 GGETIKQLQERAGVKMILI----QDG--SQNTNVDKPLRIIG-DPYKVQQACEMVMDILRE 73 (164)
T ss_dssp TTHHHHHHHHTSCSEEEEC----CCT--TSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhCCeEEEe----cCC--CCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHh
Confidence 5789999999999999872 111 22223333567889 789999999999998875
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Back Show alignment and structure
Probab=96.41 E-value=0.0099 Score=41.05 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=39.7
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
.+.++.+|++.|||.|.+-.. ..+.++...=.+.|.| +.++|++|+.+|.++|
T Consensus 122 gG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 122 GGETIKSISQQSGARIELQRN-----PPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp GGHHHHHHHHHHCCEEEEECC-----CTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHCCEEEECCC-----CCCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 578999999999999988542 1122222233578889 8999999999998864
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Back Show alignment and structure
Probab=96.41 E-value=0.016 Score=39.95 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=41.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++++.+|++.|||.|.+... .+ +..--.+.|.|+ .+.|++|+.+|.+++.+.
T Consensus 21 gG~~Ik~i~~~tg~~I~i~~~------~~--~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 21 NGEMIKKIQNDAGVRIQFKPD------DG--TTPERIAQITGP-PDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp GGHHHHHHHHHHCCEEEEECC------TT--SCSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCEEEEecC------CC--CCCccEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 578999999999999998531 11 223345678898 899999999999999864
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Back Show alignment and structure
Probab=96.40 E-value=0.0051 Score=38.91 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=36.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIK 71 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~ 71 (98)
.++++.+|+++|||.|.+- .. .+++ .+.|.|.. ++|++|+.+|.+++.
T Consensus 28 gG~tIk~Iqe~Tga~I~I~-----~~----~~~~--~v~ItG~~-e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 28 KGATIKRIQQRTHTYIVTP-----GR----DKEP--VFAVTGMP-ENVDRAREEIEAHIT 75 (83)
T ss_dssp TTSSHHHHHHHTTCEEECC-----CS----SSCC--EEEEEECT-TTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhCCeEEec-----CC----CCCC--eEEEEcCH-HHHHHHHHHHHHHHh
Confidence 4678999999999999982 11 1233 37788876 799999999988643
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Back Show alignment and structure
Probab=96.26 E-value=0.017 Score=39.03 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=40.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-.. . + +...=.+.|.|. .++|+.|+.+|.+++.+
T Consensus 109 ~G~~I~~i~~~tg~~I~i~~~-----~-~--~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 109 SGEMIKKIQNDAGVRIQFKQD-----D-G--TGPEKIAHIMGP-PDRCEHAARIINDLLQS 160 (164)
T ss_dssp SSHHHHHHHHHTCCEEEECCC-----C-T--TSSEEEEEEESC-HHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHCCeEEEeCC-----C-C--CCCcEEEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 478999999999999987421 1 1 222345788897 88999999999999876
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Back Show alignment and structure
Probab=96.11 E-value=0.02 Score=39.60 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=40.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++++.+|++.|||.|.+- +.....++..--.+.|.|. .+.|.+|+..|.+++.+
T Consensus 24 gG~~Ik~i~~~tg~~I~i~-----~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~ 78 (178)
T 2anr_A 24 GGQTIVQLQKETGATIKLS-----KSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIRE 78 (178)
T ss_dssp GGHHHHHHHHHHCCEEEEC-----CTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHhCCeEEEe-----cCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 5789999999999999873 2111222333335678896 78899999999988865
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Back Show alignment and structure
Probab=96.10 E-value=0.028 Score=38.10 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=42.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
.++++.+|++.|||.|.+-.. +.+.-.+.|.|+ .+.|++|+..|.+++.+..
T Consensus 23 gG~~Ik~i~~~tg~~I~i~~~----------~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 23 KGESVKKMREESGARINISEG----------NCPERIITLAGP-TNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp GGHHHHHHHHHHCSEEEEECC----------TTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEcCC----------CCCceEEEEEeC-HHHHHHHHHHHHHHHHhhc
Confidence 578999999999999998531 233446778997 8899999999999998864
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Back Show alignment and structure
Probab=95.72 E-value=0.024 Score=39.14 Aligned_cols=54 Identities=19% Similarity=0.088 Sum_probs=39.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.+.++.+|++.|||.|.+-.. ...+. ...=.+.|.|.. ++|++|+.+|.+++.|
T Consensus 122 gG~~Ik~i~~~tga~I~i~~~----~~~~~--~~~~~v~I~G~~-~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 122 GGATVKAIMEQSGAWVQLSQK----PDGIN--LQNRVVTVSGEP-EQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGHHHHHHHHHSSCEEEECCC----C------CCEEEEEEESSH-HHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHCCEEEEeCC----CCCCC--CCceEEEEEcCH-HHHHHHHHHHHHHHHh
Confidence 578999999999999987321 11122 223356788976 7999999999999875
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Back Show alignment and structure
Probab=95.47 E-value=0.063 Score=36.40 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=42.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
+++++.+|++.|||.|.+--. . .++..--.+.|.| +.+++.+|...|.+++.+.
T Consensus 21 ~G~~Ik~i~~~tg~~I~i~~~-----~--~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 21 KGQHIKQLSRFASASIKIAPP-----E--TPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp GGHHHHHHHHHHTCEEEECCC-----S--STTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHCCeEEEcCC-----C--CCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcc
Confidence 578999999999999988431 1 1334445688899 8899999999999988764
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=94.27 E-value=0.17 Score=32.79 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=40.3
Q ss_pred cHHHHHHhHhh-hcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17590 12 LGEALAQISEY-SEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELIKL 77 (98)
Q Consensus 12 ~~~tl~~I~e~-Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~~ 77 (98)
+++++.+|.+. +++.| .||.+ +. -+.|+|+ .+.|++|+.+|..++++.-.+.
T Consensus 45 ~G~~Ik~i~~~~~~v~I-----~fp~~------~~--~ItI~G~-~~~V~~a~~~I~~~v~el~~~~ 97 (102)
T 2ctf_A 45 KGQNLAKITQQMPKVHI-----EFTEG------ED--KITLEGP-TEDVSVAQEQIEGMVKDLINRS 97 (102)
T ss_dssp TTCHHHHHHHHCSSSEE-----EECSS------SC--EEEEEEC-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHcCCcEE-----EeCCC------CC--EEEEECC-HHHHHHHHHHHHHHHHHHHhhc
Confidence 56899999995 68777 36651 22 5899999 8889999999999998754443
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Back Show alignment and structure
Probab=94.12 E-value=0.28 Score=33.34 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=39.2
Q ss_pred cHHHHHHhHhhhcc-eeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEA-GITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga-~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.++..|++.||| .|.+.+. +.......++.-=+.|.| +.++|++|..+|..+|.+
T Consensus 85 ~G~nIr~i~~~tG~~~I~i~~~---~~~~~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 85 NGKLIQEIVDKSGVVRVRIEAE---NEKNVPQEEGMVPFVFVG-TKDSIANATVLLDYHLNY 142 (144)
T ss_dssp GGHHHHHHHHHHTCSEEEEEEE---CTTCCCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCEEEEEcCC---CCCCccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHh
Confidence 47899999999997 8886542 111111223323367888 677999999999988763
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Back Show alignment and structure
Probab=93.49 E-value=0.1 Score=33.79 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=36.2
Q ss_pred cHHHHHHhHhhhcce-eeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAG-ITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRL 69 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~-It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~i 69 (98)
.+.++.+|.|.||+. |.+-- ++. .+.|.|.+.+++++|+.+|+.+
T Consensus 33 gGk~Ik~I~e~tGv~~IdI~e-----------ddG--~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 33 HGSNIQQARKVPGVTAIELDE-----------DTG--TFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp TTHHHHHHHTSTTEEEEEEET-----------TTT--EEEEEESSHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHhCCeEEEEEc-----------CCC--EEEEEECCHHHHHHHHHHHHhh
Confidence 568999999999997 99831 123 4678899999999999998754
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Back Show alignment and structure
Probab=92.93 E-value=0.16 Score=40.27 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=41.9
Q ss_pred chhHHHHhccH---HHHHHhHhhhcceeeeeceeeCCCCCCCC-CCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 3 KSPIHLLALLG---EALAQISEYSEAGITVRGIYIPPGKNPPE-GERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 3 pq~~R~~vT~~---~tl~~I~e~Tga~It~KG~y~ppg~~p~~-ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
|+..+.-+-++ .++.+|.++|||.|. ||+...+.+ .+.+--+.|.| +++.|..|...|.++|
T Consensus 194 ~~~H~~IIGk~G~n~~IkkIr~eTGv~I~-----FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 194 TYYVDQVLGSSSTAQLMPVIERETTTIIS-----YPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp GGGHHHHTCCTTSCCHHHHHHHHHTCEEE-----CC---------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCcchHHHHHHHhhCCEEE-----CCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 34445555555 578999999999998 465433322 23455688999 9999999999998875
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Back Show alignment and structure
Probab=88.34 E-value=1.6 Score=31.91 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCC----HHHHHHHHHHHHHHH
Q psy17590 13 GEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTN----ELAVSKAKVEITRLI 70 (98)
Q Consensus 13 ~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~t----e~~V~~A~~eIk~ii 70 (98)
++++..|+|.|||.|.+-- .+.. +.|.+.+ ..++++|+..|+.+.
T Consensus 53 Gk~Ik~I~e~tgvkI~I~~-----------~~g~--V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 53 GQTKKEIEKRTKTKITIDS-----------ETGE--VWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp GHHHHHHHHHHTEEEEECT-----------TTCE--EEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcEEEEEc-----------CCCE--EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999721 2333 4577877 899999999999988
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Back Show alignment and structure
Probab=87.77 E-value=1.6 Score=31.82 Aligned_cols=45 Identities=31% Similarity=0.420 Sum_probs=37.5
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.|+..|.+.|||.|.+-| . .+.|-| +...|+.|...|.++|.+
T Consensus 147 ~G~tik~ie~~Tg~~I~v~~-------------~--~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 147 KGRTRQIIEEMSGASVSVYG-------------K--TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp GGHHHHHHHHHHCCEEEEET-------------T--EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHhCceEEECC-------------e--EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 57899999999999999964 2 288888 566779999999999865
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Back Show alignment and structure
Probab=87.52 E-value=0.52 Score=39.47 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=36.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIK 71 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~ 71 (98)
.+.++.+|+|+|||.|.+-- +- -+.|.|++.++.++|+..|+.|++
T Consensus 585 gG~~Ik~I~e~tg~~I~I~d------------~G--~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 585 GGYNLKKLQAETGVTISQVD------------EE--TFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp GGHHHHHHHHHHCCEEEECS------------SS--EEEEEESSHHHHHHHHHHTTC---
T ss_pred CChhHHHHHHHHCCEEEEcC------------Cc--EEEEEeCCHHHHHHHHHHHHHHhC
Confidence 56899999999999998741 11 467899999999999999988763
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Back Show alignment and structure
Probab=86.67 E-value=1.5 Score=28.57 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
|...||+|-+.+||.+++.+++-.+++.+++.+.+
T Consensus 63 pSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 63 PSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLA 97 (112)
T ss_dssp CSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred eCCCccEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 55679999999999999999988888888888754
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 98
d1k1ga_ 122
RNA splicing factor 1 {Human (Homo sapiens) [TaxId
99.04 d2bl5a1 134
Quaking protein A (Xqua) {African clawed frog (Xen
98.11 d1zzka1 75
HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
98.01 d1x4na1 79
Far upstream binding element, FBP {Mouse (Mus musc
98.01 d1we8a_ 104
Tudor and KH domain containing protein, Tdrkh {Mou
97.76 d2ctla1 84
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
97.68 d1j4wa2 71
Far upstream binding element, FBP {Human (Homo sap
97.68 d2ctka1 91
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
97.67 d1dtja_ 74
Neuro-oncological ventral antigen 2, nova-2, KH3 {
97.66 d2ctma1 81
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
97.62 d2axya1 71
Poly(RC)-binding protein 2 {Human (Homo sapiens) [
97.59 d1j4wa1 74
Far upstream binding element, FBP {Human (Homo sap
97.54 d2ctea1 81
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
97.54 d1wvna1 70
Poly(RC)-binding protein 1 {Human (Homo sapiens) [
97.47 d1x4ma1 81
Far upstream binding element, FBP {Mouse (Mus musc
97.45 d2ba0a3 84
Exosome complex RNA-binding protein 1, ECR1 {Archa
96.93 d1viga_ 71
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
96.83 d2cpqa1 78
Fragile X mental retardation syndrome related prot
96.75 d2ctja1 82
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
96.44 d2z0sa2 87
Exosome complex RNA-binding protein 1, ECR1 {Aerop
96.21 d2je6i3 69
Exosome complex RNA-binding protein 1, ECR1 {Sulfo
96.11 d2ctfa1 90
Vigilin {Human (Homo sapiens) [TaxId: 9606]}
95.99 d1tuaa2 104
Hypothetical protein APE0754 {Aeropyrum pernix [Ta
95.1 d1tuaa1 84
Hypothetical protein APE0754 {Aeropyrum pernix [Ta
93.64 d1wjwa_ 112
Phosphoacetylglucosamine mutase {Mouse (Mus muscul
84.86
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.9e-10 Score=76.58 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=52.3
Q ss_pred ccHHHHHHhHhhhcceeeeecee--------eCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIY--------IPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y--------~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
-++.|+.+|+++|||.|++||+- ++........+.+||++|+|.+++.|++|+.+|+.+|...+
T Consensus 26 PrG~t~K~Le~eTgckI~IrGrGS~kd~~~~~~~~~~~~~~~epLHv~I~a~~~~~~~~A~~~i~~ll~~~~ 97 (122)
T d1k1ga_ 26 PRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGI 97 (122)
T ss_dssp SSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTTTT
T ss_pred CCCchHHHHHHHHCCEEEEEecCCcccccccccCCCCCCCCCCCceEEEecCChhhHHHHHHHHHHHHHhcC
Confidence 36899999999999999999963 23333333356899999999999999999999999997543
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]
Probab=98.11 E-value=1e-06 Score=59.86 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=46.4
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCC----C------CCCCCceEEEEEeCCH-----HHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKN----P------PEGERKLFLAIESTNE-----LAVSKAKVEITRLIK 71 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~----p------~~ge~kLYL~Ieg~te-----~~V~~A~~eIk~ii~ 71 (98)
-++.|+.+|+++|||.|++||+---...+ . ...+-+||++|++.+. ..|++|+.+|+.+|.
T Consensus 25 PrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~~~a~~kl~~A~~~I~~lL~ 100 (134)
T d2bl5a1 25 PRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLV 100 (134)
T ss_dssp TTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCchHHHHHHHHCCEEEEEecCCCcCccccccccCCCCCcCCCCCCEEEEEecCcHHHHHHHHHHHHHHHHHHcC
Confidence 36889999999999999999975321110 1 0134699999999874 469999999999884
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: HnRNP K, KH3
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.8e-05 Score=47.13 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=42.2
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
++.++.+|++.|||.|.+. .+.++..--.+.|.| +.++|++|..+|.++++|.
T Consensus 22 ~G~~I~~I~~~sga~I~i~--------~~~~~~~~r~i~I~G-~~~~v~~A~~~I~~~i~e~ 74 (75)
T d1zzka1 22 GGQRIKQIRHESGASIKID--------EPLEGSEDRIITITG-TQDQIQNAQYLLQNSVKQY 74 (75)
T ss_dssp GGHHHHHHHHHHCCEEEEC--------CTTSCSSEEEEEEEE-CHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHhhcCCeEEEc--------cCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 6789999999999999983 122333334588999 6889999999999999874
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=1.2e-05 Score=48.55 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=43.5
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
.++.++.+|.+.|||.|.+. + +.++...-.+.|.| +.++|++|+.+|.++|.|+
T Consensus 25 ~~G~~i~~I~~~tg~~I~i~-----~---~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~e~ 78 (79)
T d1x4na1 25 RGGEQISRIQQESGCKIQIA-----P---DSGGLPERSCMLTG-TPESVQSAKRLLDQIVEKG 78 (79)
T ss_dssp SSSHHHHHHHHHSCCEEEEC-----S---CCTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHhCCEEEEc-----C---CCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHcc
Confidence 36789999999999999983 1 23344445788999 6889999999999999873
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Tudor and KH domain containing protein, Tdrkh
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.76 E-value=0.00013 Score=46.06 Aligned_cols=56 Identities=25% Similarity=0.204 Sum_probs=42.3
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCC-CCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGK-NPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~-~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
++.++.+|.+.|||.|.+ ++.. .....++ .+.|.| +.+.|.+|+.+|.++|.|.-.
T Consensus 33 ~G~~Ik~I~~~tga~I~i-----~~~~~~~~~~~r--~v~I~G-~~~~v~~A~~~I~~~i~e~~~ 89 (104)
T d1we8a_ 33 GGETIRSICKASGAKITC-----DKESEGTLLLSR--LIKISG-TQKEVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp TSHHHHHHHHHHCCEEEE-----CCSSCCSSSSEE--EEEEEE-EHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHcCCEEEE-----CCCCCCCCCCcc--EEEEEe-CHHHHHHHHHHHHHHHhCcHH
Confidence 578999999999999997 2211 1112222 578999 788999999999999986543
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=6.4e-05 Score=45.76 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=41.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.++.+|.+.|||.|.+ |+...+..+++. +.|.|+ ++.|++|+.+|.+++.+
T Consensus 28 ~G~~i~~I~~~t~~~I~~-----~~~~~~~~~~~~--i~I~G~-~e~v~~A~~~I~~~i~e 80 (84)
T d2ctla1 28 KGAVITQIRLEHDVNIQF-----PDKDDGNQPQDQ--ITITGY-EKNTEAARDAILRIVGE 80 (84)
T ss_dssp SSCHHHHHHHHHTCEEEC-----CCTTTCSSCSSE--EEEESC-HHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHhCCEEEE-----CCCCCCCCCcce--EEEECC-HHHHHHHHHHHHHHHHh
Confidence 578899999999999987 433333334444 578887 77899999999999987
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=7.5e-05 Score=44.19 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=39.6
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
.+.++.+|++.|||.|.+ ++...+.++..---+.|.| +.++|++|..+|.++|
T Consensus 19 ~G~~Ik~I~~~sga~I~i-----~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~e~i 71 (71)
T d1j4wa2 19 GGETIKSISQQSGARIEL-----QRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 71 (71)
T ss_dssp GGHHHHHHHHHHCCEEEE-----ECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CCcChHHHHhhcCcEEEE-----eecCCCCCCCCeEEEEEEe-CHHHHHHHHHHHHhhC
Confidence 578999999999999997 3333333333323467999 6889999999998864
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=0.00014 Score=44.91 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=43.0
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEELIK 76 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~~ 76 (98)
-++.++.+|.+.|||.|.+ |+ +++..=.+.|.|+ .+.|++|+.+|.+++.+.-..
T Consensus 27 ~~G~~i~~I~~~tg~~I~~-----p~-----~~~~~~~v~I~G~-~~~V~~A~~~I~~~v~e~~~~ 81 (91)
T d2ctka1 27 QKGSGIRKMMDEFEVNIHV-----PA-----PELQSDIIAITGL-AANLDRAKAGLLERVKELQAE 81 (91)
T ss_dssp SSSHHHHHHHHHTCCEEEC-----CC-----TTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHhCCEEEE-----CC-----CCCCcceEEEECC-HHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988 33 2333336889995 679999999999999874443
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Neuro-oncological ventral antigen 2, nova-2, KH3
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0001 Score=43.85 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=40.1
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
++.++.+|++.|||.|.+. +...+.++..---+.|+| +.++|++|..+|.++|
T Consensus 21 ~G~~Ik~I~~~sga~I~i~-----~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 73 (74)
T d1dtja_ 21 GGKTLVEYQELTGARIQIS-----KKGEFLPGTRNRRVTITG-SPAATQAAQYLISQRV 73 (74)
T ss_dssp TTHHHHHHHHHHCCEEEEC-----CTTCCSTTCCEEEEEEEE-SHHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHcCCEEEEc-----cCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHc
Confidence 5789999999999999863 333333333334588999 5889999999998865
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=8.6e-05 Score=45.01 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=41.0
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
-++.++.+|.+.|||.|.. |+...+. +. -+.|.| +.+.|++|+.+|.++++|.+
T Consensus 27 ~~G~~i~~I~~~tg~~I~~-----p~~~~~~--~~--~v~I~G-~~~~V~~A~~~I~~i~~e~~ 80 (81)
T d2ctma1 27 ARGKAIRKIMDEFKVDIRF-----PQSGAPD--PN--CVTVTG-LPENVEEAIDHILNLEEEYL 80 (81)
T ss_dssp SSSCHHHHHHHHHTCEEEC-----CCTTCSC--TT--EEEEES-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHhCCEEEe-----CCccCCC--CC--EEEEeC-CHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999965 4432221 12 478889 57789999999999999865
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Poly(RC)-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00014 Score=42.97 Aligned_cols=51 Identities=27% Similarity=0.317 Sum_probs=39.9
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++.++.+|.+.|||.|.+ ++. ...++ -+.|.| +.+.|.+|..+|.++|+|
T Consensus 21 k~G~~I~~I~~~tga~I~i-----~~~---~~~er--~v~I~G-~~~~v~~A~~~I~~~l~E 71 (71)
T d2axya1 21 KKGESVKKMREESGARINI-----SEG---NCPER--IITLAG-PTNAIFKAFAMIIDKLEE 71 (71)
T ss_dssp GGGHHHHHHHHHHCCEEEE-----CSS---CCSEE--EEEEEE-CHHHHHHHHHHHHHHHHC
T ss_pred CCChhHHHHHHHhCCEEEE-----cCC---CCCcc--eEEEEE-CHHHHHHHHHHHHHHhcC
Confidence 3678999999999999986 221 11233 477899 689999999999999875
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00028 Score=41.70 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=40.7
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
.++.++.+|++.|||.|.+... .+...+ --+.|.|. .++|++|..+|.++|.+
T Consensus 20 k~G~~I~~I~~~tga~I~i~~~------~~~~~~--r~v~I~G~-~~~v~~A~~~I~~~i~~ 72 (74)
T d1j4wa1 20 RNGEMIKKIQNDAGVRIQFKPD------DGTTPE--RIAQITGP-PDRAQHAAEIITDLLRS 72 (74)
T ss_dssp GGGHHHHHHHHHHCCEEEEECC------TTSCSE--EEEEEEEC-HHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCCEEEeccC------CCCCCe--eEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 4689999999999999997432 122223 23678895 78999999999999986
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=9e-05 Score=44.93 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=42.2
Q ss_pred HHHHhc-cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 6 IHLLAL-LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 6 ~R~~vT-~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
++.-|- +++++.+|.+.|||.|.+ |+ ++++.=.+.|.|+ ++.|++|+.+|.+++.|.
T Consensus 21 ~~~iIG~~G~~i~~I~~~tg~~I~~-----p~-----~~~~~~~v~I~G~-~~~v~~A~~~I~~iv~e~ 78 (81)
T d2ctea1 21 HRFVIGKNGEKLQDLELKTATKIQI-----PR-----PDDPSNQIKITGT-KEGIEKARHEVLLISAEQ 78 (81)
T ss_dssp HHHHHCSSSCHHHHHHHHTTCCCBC-----CC-----TTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCChhHHHHHHHhCCEEEE-----CC-----CCCCCCEEEEEeC-HHHHHHHHHHHHHHHHHH
Confidence 333343 358999999999999997 32 2333335778885 558999999999999884
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Poly(RC)-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00029 Score=41.54 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=38.3
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
.++.++.+|.+.|||.|.+. +. .++...--+.|+|. .++|++|..+|.+.|
T Consensus 19 k~G~~I~~I~~~tga~I~i~-----~~---~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i 69 (70)
T d1wvna1 19 RQGANINEIRQMSGAQIKIA-----NP---VEGSSGRQVTITGS-AASISLAQYLINARL 69 (70)
T ss_dssp GGGHHHHHHHHHHCCEEEEC-----CC---CTTCSEEEEEEEEC-HHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHcCcEEEEc-----CC---CCCCCcEEEEEEeC-HHHHHHHHHHHHHHc
Confidence 36789999999999999872 21 22233335789995 889999999998764
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Far upstream binding element, FBP
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.45 E-value=7.5e-05 Score=45.23 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=39.7
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
++.++.+|++.|||.|.+- +....+...++ .+.|.|. .+.|++|..+|.++|.|
T Consensus 26 ~G~~Ik~I~~~tga~I~i~----~~~~~~~~~~r--~v~I~G~-~~~v~~A~~~I~~~i~e 79 (81)
T d1x4ma1 26 GGETIKQLQERAGVKMVMI----QDGPQNTGADK--PLRITGD-PYKVQQAKEMVLELIRD 79 (81)
T ss_dssp SSSHHHHHHHHHTSEEEEC----CSCCCSSCSCE--EEEEEEC-TTTHHHHHHHHHHHHCC
T ss_pred CCchHHHHHHHhCCeEEEc----cCCCCCCCCce--EEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 4689999999999999972 11111222333 6778995 58999999999999864
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Exosome complex RNA-binding protein 1, ECR1
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.93 E-value=0.0011 Score=40.71 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=38.2
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
..+.++.+|++.|||.|.+ + .+.. +.|.| +.+.|+.|...|+.++.|+
T Consensus 18 ~gG~~I~~I~~~tg~~I~i-----~-------~~g~--v~I~G-~~e~v~~A~~~I~~i~~ea 65 (84)
T d2ba0a3 18 KKGSMIKLLKSELDVQIVV-----G-------QNGL--IWVNG-DRRKVSIAEEAIYLIEQEA 65 (84)
T ss_dssp GGGHHHHHHHHHHTCEEEE-----C-------TTSE--EEEES-CHHHHHHHHHHHHHHHHCS
T ss_pred CcHHHHHHHHHHHCCEEEE-----C-------CCCE--EEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 3678999999999999988 1 1222 67889 4679999999999888763
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.00099 Score=39.19 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=35.9
Q ss_pred cHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLI 70 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii 70 (98)
+++++.+|++.|||.|.. |+.. .++. -+.|.|+ ++.|++|.++|.++.
T Consensus 23 ~G~~i~~I~~~tg~~I~i-----~~~~---~~~~--~v~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T d1viga_ 23 SGANINRIKDQYKVSVRI-----PPDS---EKSN--LIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp SCCHHHHHHHHTCCEEEC-----CCCC---SSSE--EEEEEES-SHHHHHHHHHHHHTC
T ss_pred CCchHHHHHHHhCCEEEe-----CCCC---CCCC--EEEEECC-HHHHHHHHHHHHHHh
Confidence 578899999999999987 3321 2222 3678895 678999999998763
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Fragile X mental retardation syndrome related protein 1, FXR1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00091 Score=40.54 Aligned_cols=47 Identities=17% Similarity=0.044 Sum_probs=36.9
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRL 69 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~i 69 (98)
..+.++.+|++.|||.|..- ++..=.+.|.|.|+++|++|..+|..+
T Consensus 25 ~gG~~I~~I~~~tGa~i~i~------------~~~~g~v~I~g~~~eav~~A~~~Ie~~ 71 (78)
T d2cpqa1 25 THGSNIQQARKVPGVTAIEL------------DEDTGTFRIYGESADAVKKARGFLEFV 71 (78)
T ss_dssp TTTHHHHHHHTSTTEEEEEE------------ETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CChHHHHHHHHhcCcEEEEe------------cCCCceEEEEECCHHHHHHHHHHHHHh
Confidence 35789999999999998752 112224788999999999999999643
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0067 Score=36.12 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=36.9
Q ss_pred cHHHHHHhHhh-hcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy17590 12 LGEALAQISEY-SEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEE 73 (98)
Q Consensus 12 ~~~tl~~I~e~-Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~ 73 (98)
+++++.+|.+. +||.|.. |+. ++..=-+.|.| ++..|++|..+|.++++|.
T Consensus 28 ~G~~I~~I~~~~~~~~I~~-----~~~-----~~~~~~v~I~G-~~~~v~~A~~~I~~~v~e~ 79 (82)
T d2ctja1 28 KGRLIRSIMEECGGVHIHF-----PVE-----GSGSDTVVIRG-PSSDVEKAKKQLLHLAEEK 79 (82)
T ss_dssp SSHHHHHHHHHHTSCEEEC-----CCT-----TTTCCEEEEES-CHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCcEEEE-----eCC-----CCCCceEEEeC-CHHHHHHHHHHHHHHHhhh
Confidence 56789999876 5887753 332 22222477889 5888999999999999873
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Exosome complex RNA-binding protein 1, ECR1
species: Aeropyrum pernix [TaxId: 56636]
Probab=96.21 E-value=0.0063 Score=37.71 Aligned_cols=48 Identities=25% Similarity=0.196 Sum_probs=40.2
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
..+.++..|++.|||.|++- . .| .+.|.|+++..++.|+..|+.+..|
T Consensus 18 ~gG~~ik~i~~~t~~~I~I~----d------~G----~V~I~g~~~~~~~~A~~~I~~I~~e 65 (87)
T d2z0sa2 18 RKMSMLKTLEEKTECKIFVA----R------NG----RIHLECPNEDLEAIAVMAIKIIDEE 65 (87)
T ss_dssp GGGHHHHHHHHHHCCEEEEE----T------TT----EEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHCCEEEEC----C------Cc----EEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 35789999999999999881 0 12 5899999999999999999988654
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Exosome complex RNA-binding protein 1, ECR1
species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.11 E-value=0.00011 Score=43.81 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=31.7
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
-++.++..|++.|||.|.+ +. +. -+.|.|+++..++.|...|+.+..|
T Consensus 18 kgG~~Ik~i~~~tg~~I~i-----~~-------~g--~v~I~g~~~~~v~~A~~~I~~i~~e 65 (69)
T d2je6i3 18 KNKSMYETLTSKSGCSIFV-----AN-------NG--RIWATCPSRFSEEILIEAIRKIENE 65 (69)
T ss_dssp GGGHHHHHHHTTC---CEE-----CT-------TS--EEEC-----CTTCCTHHHHTTTTTT
T ss_pred CchhHHHHHHHHHCCEEEE-----cC-------CC--EEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3678999999999999997 11 12 3788999999999999999887665
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.013 Score=35.79 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=37.9
Q ss_pred ccHHHHHHhHhh-hcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEY-SEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKEEL 74 (98)
Q Consensus 11 T~~~tl~~I~e~-Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~ 74 (98)
-.++++.+|++. +|+.|.. |+.+ . -..|.| +.+.|++|+.+|.+++.|-.
T Consensus 38 ~~G~~I~~i~~~~~~v~I~~-----~~~~------~--~v~i~G-~~~~ve~Ak~~I~~iv~el~ 88 (90)
T d2ctfa1 38 KKGQNLAKITQQMPKVHIEF-----TEGE------D--KITLEG-PTEDVSVAQEQIEGMVKDLI 88 (90)
T ss_dssp TTTCHHHHHHHHCSSSEEEE-----CSSS------C--EEEEEE-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHcCCcEEee-----CCCC------c--eEEEeC-CHHHHHHHHHHHHHHHHHHh
Confidence 357889999988 5788855 3321 1 278899 56689999999999999854
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]
Probab=95.10 E-value=0.021 Score=36.33 Aligned_cols=46 Identities=26% Similarity=0.135 Sum_probs=37.7
Q ss_pred ccHHHHHHhHhhhcceeeeeceeeCCCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy17590 11 LLGEALAQISEYSEAGITVRGIYIPPGKNPPEGERKLFLAIESTNELAVSKAKVEITRLIKE 72 (98)
Q Consensus 11 T~~~tl~~I~e~Tga~It~KG~y~ppg~~p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e 72 (98)
..+.++..|++.|||.|.+-| . -..|-| +.+.++.|+..|..++.+
T Consensus 30 ~gGktik~Ie~~Tg~~I~I~d-------------~--~v~iig-~~e~i~~A~~~Ie~li~~ 75 (104)
T d1tuaa2 30 EGGRARRTIEEMTDTYINVGE-------------Y--EVAIIG-DYERAMAAKQAIEMLAEG 75 (104)
T ss_dssp GGGHHHHHHHHHHTCEEEECS-------------S--EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHCCeEEEeC-------------C--eEEEEE-CchhHHHHHHHHHHHHcC
Confidence 678899999999999999943 1 255667 667899999999998864
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Hypothetical protein APE0754
species: Aeropyrum pernix [TaxId: 56636]
Probab=93.64 E-value=0.04 Score=33.49 Aligned_cols=18 Identities=39% Similarity=0.357 Sum_probs=16.8
Q ss_pred cHHHHHHhHhhhcceeee
Q psy17590 12 LGEALAQISEYSEAGITV 29 (98)
Q Consensus 12 ~~~tl~~I~e~Tga~It~ 29 (98)
.++++.+|++.|||.|.+
T Consensus 21 gG~~Ik~i~~~tg~~I~I 38 (84)
T d1tuaa1 21 RGEVKAEIMRRTGTVITV 38 (84)
T ss_dssp GGHHHHHHHHHHTEEEEE
T ss_pred CchhHHHHHHHHCCEEEE
Confidence 578999999999999998
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Phosphoglucomutase, C-terminal domain
family: Phosphoglucomutase, C-terminal domain
domain: Phosphoacetylglucosamine mutase
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.86 E-value=1 Score=28.21 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=31.5
Q ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q psy17590 40 PPEGERKLFLAIESTNELAVSKAKVEITRLIKEELI 75 (98)
Q Consensus 40 p~~ge~kLYL~Ieg~te~~V~~A~~eIk~ii~e~~~ 75 (98)
|...||.+-+.+||.++..++.-..+|+.++++...
T Consensus 63 pSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~~~~~ 98 (112)
T d1wjwa_ 63 PSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAG 98 (112)
T ss_dssp CSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTC
T ss_pred eCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 556799999999999999999999999999987543
