Psyllid ID: psy17615

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ
cEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHcccccccccccEEEcccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEHEEEcccccEEEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEcccccccccEEEEEEEEEEccEEEEEEcccccccccccEEEEEEcccccccccEEEEEccEEEEcccccEEEEEEccccccccccEEEEcccccEEEEEEEEccccccccccccccccccccccccccccEEEEEEEccEEcccEEEEEEEEEcccccccccEEEEEcccccc
cccEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHccccccccEEEcccEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHEHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEEccccccccccccccHHHHHccccHccccccccccccccHcccccccccccEEcccEEEEEHHHHEEEEEcccccEEEEEEEEEEEEEEEEccccccEEcccccEEEccccEccEEEEcccccccEEEEccccccEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEEEHcccccccEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEEEEccccccccccccEEEEEEEcccccccccccEEEEEEEEEEEEccEEEEEEEEEccccccccEEEEEEcccccc
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEaqnsvakpedippiittphhYLISVYRKGVFFVAVtmsevpplFVIEFLDRVVTTFHDYfndcsesvlkdNYVVVYEILDEMldngfplatesnvlkelikppniLRTIANtmtggsnvssilpsgqlssvpwrrtggsnvssilpsgqlssvpwrrtgvkytnneayFDVIEEVDAIIDKTGSTIFSEIQGYIDCCiklsgmpdltlsfmnprlfddvsfhpcvrfkRWEAERIlsfippdgnfrlmSYHINTQnlvaiplyinhninfkqnkidmtigpkqtigRTIENIvieipmpsVVLNCTllqnqgkytfdpiKKILTwdlhstersgdqgkytfdpikkiltwdvgridienklpnirgsftvqsgqenhnfnltiNVKFTINQLAISGLKvnrldmygekykpfkgvkyittggtfq
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNsvakpedippiITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDyfndcsesvlkDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGgsnvssilpsgqlssvpwrrtgVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLhstersgdqgkytfdpiKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVnrldmygekykpfkgvkyittggtfq
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ
***SLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTG**********************************LSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTG****
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPN********************************************************KYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQ**YTFDPIKKILTWDLHSTE****QG*YTFDPIKKILTWD******************************TINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTG****
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ
MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSI*******************************PWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTG****
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MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
Q5R478418 AP-3 complex subunit mu-1 yes N/A 0.895 0.983 0.613 1e-170
Q9Y2T2418 AP-3 complex subunit mu-1 yes N/A 0.895 0.983 0.613 1e-170
Q9JKC8418 AP-3 complex subunit mu-1 yes N/A 0.895 0.983 0.611 1e-169
Q24K11418 AP-3 complex subunit mu-1 yes N/A 0.895 0.983 0.613 1e-169
P53676418 AP-3 complex subunit mu-1 yes N/A 0.895 0.983 0.613 1e-169
Q5ZMP7418 AP-3 complex subunit mu-1 yes N/A 0.895 0.983 0.609 1e-168
P53677418 AP-3 complex subunit mu-2 no N/A 0.895 0.983 0.624 1e-166
P47795418 AP-1 complex subunit mu O N/A N/A 0.895 0.983 0.593 1e-165
Q8R2R9418 AP-3 complex subunit mu-2 no N/A 0.895 0.983 0.615 1e-164
P53678418 AP-3 complex subunit mu-2 no N/A 0.895 0.983 0.617 1e-164
>sp|Q5R478|AP3M1_PONAB AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1 Back     alignment and function desciption
 Score =  598 bits (1541), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/463 (61%), Positives = 347/463 (74%), Gaps = 52/463 (11%)

Query: 1   MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
           MIHSLF+IN + DI LEKHWK ++S+SVCDYFFEAQ   A  E++PP+I+TPHHYLIS+Y
Sbjct: 1   MIHSLFLINCSGDIFLEKHWKSVVSQSVCDYFFEAQEKAADVENVPPVISTPHHYLISIY 60

Query: 61  RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
           R  +FFV+V  +EVPPLFVIEFL RV  TF DYF +CSE+ +KDN V+VYE+L+EMLDNG
Sbjct: 61  RDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNG 120

Query: 121 FPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILP 180
           FPLATESN+LKELIKPP ILR++ N++TG SNV   LP+GQLS++P              
Sbjct: 121 FPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIP-------------- 166

Query: 181 SGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240
                   WRR GVKYTNNEAYFDV+EE+DAIIDK+GST+F+EIQG ID CIKLSGMPDL
Sbjct: 167 --------WRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDL 218

Query: 241 TLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINH 300
           +LSFMNPRL DDVSFHPC+RFKRWE+ER+LSFIPPDGNFRL+SY +++QNLVAIP+Y+ H
Sbjct: 219 SLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKH 278

Query: 301 NINFKQN----KIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKI 356
           +I+FK+N    + D+TIGPKQ +G+TIE I + + MP VVLN  L   QG YTFDP+ K+
Sbjct: 279 SISFKENSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTKV 338

Query: 357 LTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLT 416
                                    LTWDVG+I    KLP+++G   +QSG      N +
Sbjct: 339 -------------------------LTWDVGKI-TPQKLPSLKGLVNLQSGAPKPEENPS 372

Query: 417 INVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ 459
           +N++F I QLAISGLKVNRLDMYGEKYKPFKGVKY+T  G FQ
Sbjct: 373 LNIQFKIQQLAISGLKVNRLDMYGEKYKPFKGVKYVTKAGKFQ 415
Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.
Pongo abelii (taxid: 9601)
>sp|Q9Y2T2|AP3M1_HUMAN AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1 Back     alignment and function description
>sp|Q9JKC8|AP3M1_MOUSE AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1 Back     alignment and function description
>sp|Q24K11|AP3M1_BOVIN AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|P53676|AP3M1_RAT AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP7|AP3M1_CHICK AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1 Back     alignment and function description
>sp|P53677|AP3M2_HUMAN AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1 Back     alignment and function description
>sp|P47795|AP1M_DIPOM AP-1 complex subunit mu OS=Diplobatis ommata PE=2 SV=1 Back     alignment and function description
>sp|Q8R2R9|AP3M2_MOUSE AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description
>sp|P53678|AP3M2_RAT AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
307211277417 AP-3 complex subunit mu-1 [Harpegnathos 0.895 0.985 0.686 0.0
66564836417 PREDICTED: AP-3 complex subunit mu-1-lik 0.895 0.985 0.681 0.0
340727932417 PREDICTED: AP-3 complex subunit mu-1-lik 0.895 0.985 0.679 0.0
383862337417 PREDICTED: AP-3 complex subunit mu-1 [Me 0.895 0.985 0.677 0.0
307186274417 AP-3 complex subunit mu-1 [Camponotus fl 0.895 0.985 0.675 0.0
332021080417 AP-3 complex subunit mu-1 [Acromyrmex ec 0.895 0.985 0.679 0.0
322799306417 hypothetical protein SINV_03403 [Solenop 0.895 0.985 0.677 0.0
91091862415 PREDICTED: similar to GA15778-PA [Tribol 0.891 0.985 0.673 0.0
193617799419 PREDICTED: AP-3 complex subunit mu-1-lik 0.895 0.980 0.676 0.0
195047324415 GH24272 [Drosophila grimshawi] gi|193893 0.891 0.985 0.653 1e-177
>gi|307211277|gb|EFN87463.1| AP-3 complex subunit mu-1 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/462 (68%), Positives = 370/462 (80%), Gaps = 51/462 (11%)

Query: 1   MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
           MIHSLFIINS+ D+ +EKHWK  ++RS+CDYFF+ Q  V  PED PP+I TPHHYLIS+Y
Sbjct: 1   MIHSLFIINSSGDVFMEKHWKSAVARSLCDYFFDQQRRVLSPEDTPPVIATPHHYLISIY 60

Query: 61  RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
           R  +FFVAV M+EVPPLFVIEFL RVV TF DYFN+C+E+++K+NYVVVYE+LDEMLDNG
Sbjct: 61  RCNMFFVAVCMTEVPPLFVIEFLHRVVDTFEDYFNECTETIIKENYVVVYELLDEMLDNG 120

Query: 121 FPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILP 180
           FPLATESN+LKELIKPPNILRTIANT+TG SNVS+ILPSGQLS+VPW             
Sbjct: 121 FPLATESNILKELIKPPNILRTIANTVTGKSNVSAILPSGQLSNVPW------------- 167

Query: 181 SGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240
                    RRTGVKYTNNEAYFDV+EEVDAIID+TG+T+F+EIQGYIDCCIKLSGMPDL
Sbjct: 168 ---------RRTGVKYTNNEAYFDVVEEVDAIIDRTGATVFAEIQGYIDCCIKLSGMPDL 218

Query: 241 TLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINH 300
           TLSFMNPRLFDDVSFHPCVRFKRWE+ERILSFIPPDGNFRL+SYHI +Q++VAIP+Y+ H
Sbjct: 219 TLSFMNPRLFDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHIGSQSIVAIPIYVRH 278

Query: 301 NINFKQ---NKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKIL 357
           NI+ K+    ++D+T+GPKQTIGRT+EN+V+EIPMP +VLNCTL  NQGKY+FDP+ K  
Sbjct: 279 NISLKELGGGRLDITVGPKQTIGRTVENVVLEIPMPKIVLNCTLTPNQGKYSFDPVSK-- 336

Query: 358 TWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTI 417
                                  IL WD+GRID+ +KLPN+RGS T+Q+       N  I
Sbjct: 337 -----------------------ILLWDIGRIDV-SKLPNLRGSITIQNSATVSESNPAI 372

Query: 418 NVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ 459
           NV FTINQLA+SGLKVNRLDMYGEKYKPFKGVKYIT  G FQ
Sbjct: 373 NVHFTINQLAVSGLKVNRLDMYGEKYKPFKGVKYITKAGKFQ 414

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|66564836|ref|XP_624899.1| PREDICTED: AP-3 complex subunit mu-1-like [Apis mellifera] gi|380016861|ref|XP_003692390.1| PREDICTED: AP-3 complex subunit mu-1 [Apis florea] Back     alignment and taxonomy information
>gi|340727932|ref|XP_003402287.1| PREDICTED: AP-3 complex subunit mu-1-like [Bombus terrestris] gi|350400044|ref|XP_003485718.1| PREDICTED: AP-3 complex subunit mu-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383862337|ref|XP_003706640.1| PREDICTED: AP-3 complex subunit mu-1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307186274|gb|EFN71937.1| AP-3 complex subunit mu-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332021080|gb|EGI61467.1| AP-3 complex subunit mu-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322799306|gb|EFZ20694.1| hypothetical protein SINV_03403 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|91091862|ref|XP_968876.1| PREDICTED: similar to GA15778-PA [Tribolium castaneum] gi|270000812|gb|EEZ97259.1| hypothetical protein TcasGA2_TC011059 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|193617799|ref|XP_001947677.1| PREDICTED: AP-3 complex subunit mu-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195047324|ref|XP_001992318.1| GH24272 [Drosophila grimshawi] gi|193893159|gb|EDV92025.1| GH24272 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
ZFIN|ZDB-GENE-021015-2421 ap3m1 "adaptor-related protein 0.418 0.456 0.668 1.3e-172
FB|FBgn0000330415 cm "carmine" [Drosophila melan 0.448 0.496 0.703 7e-113
UNIPROTKB|F2Z4I2418 AP3M1 "AP-3 complex subunit mu 0.636 0.698 0.511 7.1e-109
UNIPROTKB|Q9Y2T2418 AP3M1 "AP-3 complex subunit mu 0.636 0.698 0.511 7.1e-109
UNIPROTKB|Q5R478418 AP3M1 "AP-3 complex subunit mu 0.636 0.698 0.511 7.1e-109
UNIPROTKB|Q24K11418 AP3M1 "AP-3 complex subunit mu 0.496 0.545 0.624 7.1e-109
UNIPROTKB|F1SU34418 AP3M1 "Uncharacterized protein 0.636 0.698 0.511 9.1e-109
UNIPROTKB|Q5ZMP7418 AP3M1 "AP-3 complex subunit mu 0.636 0.698 0.508 1.2e-108
UNIPROTKB|Q6IRG9418 Ap3m1 "Adaptor-related protein 0.636 0.698 0.511 2.4e-108
UNIPROTKB|F1NZC2418 AP3M1 "AP-3 complex subunit mu 0.636 0.698 0.504 3.9e-108
ZFIN|ZDB-GENE-021015-2 ap3m1 "adaptor-related protein complex 3, mu 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 750 (269.1 bits), Expect = 1.3e-172, Sum P(3) = 1.3e-172
 Identities = 131/196 (66%), Positives = 166/196 (84%)

Query:   170 TGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYID 229
             TG SNV   LP+GQLS++PWRR GVKYTNNEAYFDV+EE+DAI+DK+G+T+F+EIQG ID
Sbjct:   148 TGSSNVGETLPTGQLSTIPWRRAGVKYTNNEAYFDVVEEIDAILDKSGTTVFAEIQGVID 207

Query:   230 CCIKLSGMPDLTLSFMNPRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQ 289
              C+KLSGMPDLTLSFMNPRL DDVSFHPCVR+KRWE+ER++SFIPPDGNF+LMSYHI+ Q
Sbjct:   208 ACVKLSGMPDLTLSFMNPRLLDDVSFHPCVRYKRWESERVISFIPPDGNFQLMSYHISAQ 267

Query:   290 NLVAIPLYINHNINFKQN----KIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQ 345
             NLVAIP+Y+  NI+F ++    ++D+T+ PKQT+G+ +E +V+ I MP VVL+ TL   Q
Sbjct:   268 NLVAIPVYVKQNISFFESGSSGRLDITVSPKQTMGKVVECVVVTIHMPKVVLSATLNATQ 327

Query:   346 GKYTFDPIKKILTWDL 361
             G Y +DP+ KIL WD+
Sbjct:   328 GTYKYDPLTKILVWDI 343
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006810 "transport" evidence=IEA
FB|FBgn0000330 cm "carmine" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4I2 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2T2 AP3M1 "AP-3 complex subunit mu-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R478 AP3M1 "AP-3 complex subunit mu-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K11 AP3M1 "AP-3 complex subunit mu-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU34 AP3M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP7 AP3M1 "AP-3 complex subunit mu-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IRG9 Ap3m1 "Adaptor-related protein complex 3, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZC2 AP3M1 "AP-3 complex subunit mu-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8R2R9AP3M2_MOUSENo assigned EC number0.61550.89540.9832noN/A
Q24K11AP3M1_BOVINNo assigned EC number0.61330.89540.9832yesN/A
P47795AP1M_DIPOMNo assigned EC number0.59390.89540.9832N/AN/A
Q5R478AP3M1_PONABNo assigned EC number0.61330.89540.9832yesN/A
Q9JKC8AP3M1_MOUSENo assigned EC number0.61120.89540.9832yesN/A
Q9Y2T2AP3M1_HUMANNo assigned EC number0.61330.89540.9832yesN/A
Q00776AP1M1_YEASTNo assigned EC number0.24360.89320.8631yesN/A
P53677AP3M2_HUMANNo assigned EC number0.62410.89540.9832noN/A
P53676AP3M1_RATNo assigned EC number0.61330.89540.9832yesN/A
Q9HFE5AP1M1_SCHPONo assigned EC number0.26890.87360.9413yesN/A
P53678AP3M2_RATNo assigned EC number0.61770.89540.9832noN/A
Q9GPF1AP3M_DICDINo assigned EC number0.41790.88880.9691yesN/A
Q5ZMP7AP3M1_CHICKNo assigned EC number0.60900.89540.9832yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 1e-129
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 1e-124
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 1e-118
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 3e-67
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 2e-64
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 7e-43
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 3e-38
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 6e-33
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-32
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 4e-25
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 6e-11
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 5e-06
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 3e-04
cd09254232 cd09254, AP_delta-COPI_MHD, Mu homology domain (MH 0.002
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information 
 Score =  374 bits (962), Expect = e-129
 Identities = 172/277 (62%), Positives = 213/277 (76%), Gaps = 30/277 (10%)

Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
           VPWRRTGVKYTNNEAYFDVIEE+DAIIDK+GSTI +EIQG ID C+KL+GMPDLTLSFMN
Sbjct: 1   VPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMPDLTLSFMN 60

Query: 247 PRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK- 305
           PRL DDVSFHPCVRFKRWE+ERILSFIPPDGNFRL+SYH++ QNLVAIP+Y+ HNI+F+ 
Sbjct: 61  PRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNISFRE 120

Query: 306 ---QNKIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLH 362
                + ++T+GPKQT+G+T+E + +   MP  VLN +L                     
Sbjct: 121 GSSLGRFEITLGPKQTMGKTVEGVTVTSQMPKGVLNMSL--------------------- 159

Query: 363 STERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFT 422
               +  QG YTFDP+ K+L+WDVG+I+ + KLP+++GS ++Q+G    + N TIN++F 
Sbjct: 160 ----TPSQGTYTFDPVTKLLSWDVGKINPQ-KLPSLKGSMSLQAGASKPDENPTINLQFK 214

Query: 423 INQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ 459
           I QLAISGLKVNRLDMYGEKYKPFKG+KY+T  G FQ
Sbjct: 215 IQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQ 251

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, AP-2, AP-3, and AP-4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This subfamily corresponds to the C-terminal domain of heterotetrameric adaptor protein complex 3 (AP-3) medium mu3B subunit encoded by ap3m2 gene. Mu3B is specifically expressed in neurons and neuroendocrine cells. Neuron-specific AP-3 appears to be involved in synaptic vesicle biogenesis from endosomes in neurons and plays an important role in synaptic transmission in the central nervous system. Unlike AP-1 and AP-2, which function in conjunction with clathrin which is a scaffolding protein participating in the formation of coated vesicles, the nature of the outer shell of neuron-specific AP-3 containing coats remains to be elucidated. Membrane-anchored cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-3 mu3B subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Length = 254
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211365 cd09254, AP_delta-COPI_MHD, Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
KOG0938|consensus446 100.0
KOG2740|consensus418 100.0
KOG0937|consensus424 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635|consensus512 100.0
KOG2677|consensus922 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.95
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.87
KOG0934|consensus145 99.83
KOG0935|consensus143 99.8
KOG0936|consensus182 99.77
KOG3343|consensus175 99.76
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.34
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.12
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 96.79
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 95.85
KOG0997|consensus523 94.02
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 92.72
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 91.7
KOG0781|consensus 587 90.22
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 89.3
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 88.81
KOG0859|consensus217 80.06
>KOG0938|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.4e-96  Score=690.82  Aligned_cols=410  Identities=29%  Similarity=0.549  Sum_probs=364.1

Q ss_pred             CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHH
Q psy17615          1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVI   80 (459)
Q Consensus         1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~   80 (459)
                      ||+++||+|.+|++|+.|.||++..++..|+|+-++.+.  ....+|+..++++.|+|.+.++||+|+++.+|.|.+.++
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n--~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~   78 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN--LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVF   78 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc--cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHH
Confidence            999999999999999999999999999999999999884  356789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCC
Q psy17615         81 EFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSG  160 (459)
Q Consensus        81 ~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~  160 (459)
                      |||..+.+++..|||+++|+.|++||.+|||+||||+|+||||+|++++|+..+..+..-++      |.....+.-|+ 
T Consensus        79 eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~------g~~ls~k~s~~-  151 (446)
T KOG0938|consen   79 EFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSM------GGVLSSKSSPT-  151 (446)
T ss_pred             HHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhcc------ccccCCcCCCC-
Confidence            99999999999999999999999999999999999999999999999999999988655321      10000000110 


Q ss_pred             CCCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCce
Q psy17615        161 QLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL  240 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~  240 (459)
                             ..++..  .+   ......++||+.|++|++||+|+||.|+++.+++++|++++++|.|.|.|+++|||||+|
T Consensus       152 -------sq~~~~--~s---sqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPec  219 (446)
T KOG0938|consen  152 -------SQATEL--RS---SQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPEC  219 (446)
T ss_pred             -------cccccc--cc---cccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCccc
Confidence                   000000  00   111236899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCC---------------------------ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccc
Q psy17615        241 TLSFMNP---------------------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVA  293 (459)
Q Consensus       241 ~l~ln~~---------------------------~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~  293 (459)
                      ++|||+.                           ..|+||+||+||++++|++++.|+|+||||+|+||+||++.+  +.
T Consensus       220 kfGlNDkl~~e~kq~esks~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~en--In  297 (446)
T KOG0938|consen  220 KFGLNDKLGMESKQSESKSDFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTEN--IN  297 (446)
T ss_pred             ccccCcccceeeccccccccccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccC--cc
Confidence            9999853                           258999999999999999999999999999999999999876  78


Q ss_pred             cCeEEEEEEEEe-CCEEEEEEeecCCCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCC
Q psy17615        294 IPLYINHNINFK-QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQ  370 (459)
Q Consensus       294 lP~~v~~~~~~~-~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  370 (459)
                      +||+|.|.++.. ..++|+++.+++.|+.  .+.+|+++||+|+++..++...+.|+++|.|                  
T Consensus       298 lPFrV~PiV~el~r~kie~ri~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~p------------------  359 (446)
T KOG0938|consen  298 LPFRVTPIVTELGRTKIEYRITIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVP------------------  359 (446)
T ss_pred             cceEeeeheecccceeEEEEEEEeccCCchhhhcceEEEecCCCccccceeEEecCccccCc------------------
Confidence            999999999875 5799999999999853  5799999999999999999998888887766                  


Q ss_pred             cceeecCCceEEEEEecccCCCCCcceEEEEEEecCCC--CCCCCCcceEEEEEECceecccceEeEEEeec--cCCCcc
Q psy17615        371 GKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ--ENHNFNLTINVKFTINQLAISGLKVNRLDMYG--EKYKPF  446 (459)
Q Consensus       371 g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~--~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~--~~~~p~  446 (459)
                             ++++++|+|+++.| .++.++++++++.+..  .+.|..+||+++|++|+++.|||.|++++|.+  .+|+..
T Consensus       360 -------sen~ivWki~kf~G-~tE~tlsAevels~Tt~nkq~WtrPPIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~v  431 (446)
T KOG0938|consen  360 -------SENAIVWKINKFNG-LTESTLSAEVELSDTTQNKQQWTRPPISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAV  431 (446)
T ss_pred             -------ccceEEEEecccCC-cccceeEEEEEeccCccccccccCCCceeEEeeeeecCCceEEEEEEEecccCCCceE
Confidence                   99999999999999 8899999999998764  34688999999999999999999999999987  379999


Q ss_pred             cceEEEeecCCCC
Q psy17615        447 KGVKYITTGGTFQ  459 (459)
Q Consensus       447 k~VrY~t~sg~y~  459 (459)
                      |||||+|+||+||
T Consensus       432 kWVrYitkaGsyE  444 (446)
T KOG0938|consen  432 KWVRYITKAGSYE  444 (446)
T ss_pred             EEEEEecccceee
Confidence            9999999999997

>KOG2740|consensus Back     alignment and domain information
>KOG0937|consensus Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635|consensus Back     alignment and domain information
>KOG2677|consensus Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0934|consensus Back     alignment and domain information
>KOG0935|consensus Back     alignment and domain information
>KOG0936|consensus Back     alignment and domain information
>KOG3343|consensus Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>KOG0997|consensus Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0781|consensus Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>KOG0859|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 1e-100
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-41
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-34
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-33
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 1e-27
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 8e-26
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-18
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 2e-17
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 2e-17
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-17
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 8e-15
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 7e-13
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 7e-07
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/277 (62%), Positives = 208/277 (75%), Gaps = 30/277 (10%)
Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
           +PWRR GVKYTNNEAYFDV+EE+DAIIDK+GST+F+EIQG ID CIKLSGMPDL+LSFMN
Sbjct: 8   IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 247 PRLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFKQ 306
           PRL DDVSFHPC+RFKRWE+ER+LSFIPPDGNFRL+SY +++QNLVAIP+Y+ HNI+FK+
Sbjct: 68  PRLLDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNLVAIPVYVKHNISFKE 127
Query: 307 N----KIDMTIGPKQTIGRTIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLH 362
           N    + D+TIGPKQ +G+TIE I + + MP VVLN  L   QG YTFDP+ K       
Sbjct: 128 NSSCGRFDITIGPKQNMGKTIEGITVTVHMPKVVLNMNLTPTQGSYTFDPVTK------- 180
Query: 363 STERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSFTVQSGQENHNFNLTINVKFT 422
                             +L WDVG+I  + KLP+++G   +QSG      N  +N++F 
Sbjct: 181 ------------------VLAWDVGKITPQ-KLPSLKGLVNLQSGAPKPEENPNLNIQFK 221
Query: 423 INQLAISGLKVNRLDMYGEKYKPFKGVKYITTGGTFQ 459
           I QLAISGLKVNRLDMYGEKYKPFKGVKYIT  G FQ
Sbjct: 222 IQQLAISGLKVNRLDMYGEKYKPFKGVKYITKAGKFQ 258
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 6e-87
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-83
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 4e-65
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 4e-64
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-62
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 7e-58
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 2e-27
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 6e-25
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  271 bits (694), Expect = 6e-87
 Identities = 106/488 (21%), Positives = 180/488 (36%), Gaps = 85/488 (17%)

Query: 1   MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVY 60
           MI  LFI N   ++++ + ++  I R+  D F       A+ +   P+          V 
Sbjct: 1   MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH-ARQQVRSPVTNIARTSFFHVK 59

Query: 61  RKGVFFVAVTMSEVPPLFVIEFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNG 120
           R  ++  AVT   V    V EFL ++      YF   SE  +K+N+V++YE+LDE+LD G
Sbjct: 60  RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119

Query: 121 FPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSGQLSSVPWRRTGGSNVSSILP 180
           +P  +E+  LK  I    I              S +                        
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTG---------------------- 157

Query: 181 SGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL 240
                 + WRR G+KY  NE + DV+E V+ ++   G  + + + G +     LSGMP+ 
Sbjct: 158 -----QIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPEC 212

Query: 241 TLSFMNPRL---------------------FDDVSFHPCVRFKRWEAERILSFIPPDGNF 279
                +  +                      DD +FH CVR  ++++ER +SFIPPDG F
Sbjct: 213 KFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF 272

Query: 280 RLMSYHINTQNLVAIPLYINHNIN-FKQNKIDMTIGPKQTIGR--TIENIVIEIPMPSVV 336
            LM Y       + +P  +   +    + K+++ +  K         + I + IP P   
Sbjct: 273 ELMRYRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNT 330

Query: 337 LNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLP 396
               ++  +GK  +   +  + W +                                K  
Sbjct: 331 SGVQVICMKGKAKYKASENAIVWKIKRMAGM--------------------------KES 364

Query: 397 NIRGSFTVQSGQ-----ENHNFNLTINVKFTINQLAISGLKVNRLDMYGEKYKPFKGVKY 451
            I     +              ++   V F  + L +  LKV    +    +   K V+Y
Sbjct: 365 QISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRY 424

Query: 452 ITTGGTFQ 459
           I   G ++
Sbjct: 425 IGRSGIYE 432
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 100.0
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.97
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 98.78
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 92.06
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 90.84
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 90.81
3cue_A219 Transport protein particle 23 kDa subunit; membran 89.82
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 88.39
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 88.03
2fh5_A185 Signal recognition particle receptor alpha subunit 87.11
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 84.5
1nrj_A158 Signal recognition particle receptor alpha subunit 84.28
2j3t_C145 Trafficking protein particle complex subunit 1, tr 82.54
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=4.4e-93  Score=736.75  Aligned_cols=402  Identities=27%  Similarity=0.513  Sum_probs=351.9

Q ss_pred             CeeEEEEEcCCCCEEEEeccCCCcccchHHHHHHHhhccCCCCCCCCeEEcCCEEEEEEEeCcEEEEEEEcCCCChHHHH
Q psy17615          1 MIHSLFIINSTSDIILEKHWKRIISRSVCDYFFEAQNSVAKPEDIPPIITTPHHYLISVYRKGVFFVAVTMSEVPPLFVI   80 (459)
Q Consensus         1 MI~~i~Iln~~G~~l~~r~y~~~~~~~~~~~f~~~~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~~~~~   80 (459)
                      ||++|||+|++|+++++|+|+++.++..++.|++.+.... ....+|++++++++|+|+++++|||+++++.++||++++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~-~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l   79 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVF   79 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCS-SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccc-cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence            9999999999999999999999888888899999888642 236799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCHHHHhhhHHHHHHHHHHHhhCCcccccChHHHHhhcCCCchhhhhhccccCCCCcccCCCCC
Q psy17615         81 EFLDRVVTTFHDYFNDCSESVLKDNYVVVYEILDEMLDNGFPLATESNVLKELIKPPNILRTIANTMTGGSNVSSILPSG  160 (459)
Q Consensus        81 ~~L~~~~~~l~~y~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~s~~~~~~~~~~~~~~~~~~~~~~  160 (459)
                      ++||+|+++|++|||+++|++|++||++||++||||+|+|+|++|++++|++++.++++..++.. ..+    ....|  
T Consensus        80 e~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~-~~~----~~~~~--  152 (435)
T 2vgl_M           80 EFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQT-KEE----QSQIT--  152 (435)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccc-ccc----ccccc--
Confidence            99999999999999999999999999999999999999999999999999999999998665421 000    00111  


Q ss_pred             CCCCCccccCCCCCccccCCCCCccccccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCce
Q psy17615        161 QLSSVPWRRTGGSNVSSILPSGQLSSVPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDL  240 (459)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~  240 (459)
                                          .+..++++||+.|++|++|||||||+|+++++++++|.+++++|.|.|.|+|+|+|||+|
T Consensus       153 --------------------~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~  212 (435)
T 2vgl_M          153 --------------------SQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPEC  212 (435)
T ss_dssp             --------------------------CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEE
T ss_pred             --------------------cccccccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeE
Confidence                                122346899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCC---------------------ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEE
Q psy17615        241 TLSFMNP---------------------RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYIN  299 (459)
Q Consensus       241 ~l~ln~~---------------------~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~  299 (459)
                      +|+||++                     ..++||+|||||++++|+++|+|+|+||||+|+||+||++.+  ..+||.+.
T Consensus       213 ~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~--~~~P~~i~  290 (435)
T 2vgl_M          213 KFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVI  290 (435)
T ss_dssp             EEEECSSSCC-----------------CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSS--CCCSEEEE
T ss_pred             EEEeCchhhcccccccccccccccccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCC--cCCCeEEE
Confidence            9999864                     357899999999999999999999999999999999999875  57999999


Q ss_pred             EEEEEe-CCEEEEEEeecCCCCC--ccceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeec
Q psy17615        300 HNINFK-QNKIDMTIGPKQTIGR--TIENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFD  376 (459)
Q Consensus       300 ~~~~~~-~~~~e~~l~~~~~~~~--~~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  376 (459)
                      ||++.. ++++||+++++++++.  .++||.|+||+|+.+.++.+.++.|+++|++                        
T Consensus       291 ~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~------------------------  346 (435)
T 2vgl_M          291 PLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKA------------------------  346 (435)
T ss_dssp             EEEECCTTTEEEEEEEEEECSCTTSEEEEEEEEEECCSSCCCEEEEESSSEEEEET------------------------
T ss_pred             EEEEecCCCEEEEEEEEeCCCCCCceeeEEEEEEECCCCCCCceEEecceeEEEcc------------------------
Confidence            999875 4689999998877753  5999999999999998888888877776655                        


Q ss_pred             CCceEEEEEecccCCCCCcceEEEEEEecCCC-CCCCCCcceEEEEEECceecccceEeEEEeecc-----CCCcccceE
Q psy17615        377 PIKKILTWDVGRIDIENKLPNIRGSFTVQSGQ-ENHNFNLTINVKFTINQLAISGLKVNRLDMYGE-----KYKPFKGVK  450 (459)
Q Consensus       377 ~~~~~l~W~I~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~i~v~F~i~~~t~SGl~V~~l~v~~~-----~~~p~k~Vr  450 (459)
                       ++++++|+|+++++ +++++++|++++.+.. ..++.++||+|+|++| +++||++|++|++.++     +|+|+||||
T Consensus       347 -~~~~l~W~I~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVr  423 (435)
T 2vgl_M          347 -SENAIVWKIKRMAG-MKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVR  423 (435)
T ss_dssp             -TTTEEEEEEEEEET-TCEEEEEEEEECCCCSCSCCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEE
T ss_pred             -CCCEEEEEeccCCC-CCCEEEEEEEEecCCCcCcccCCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceE
Confidence             99999999999998 7899999999998753 3456689999999999 9999999999999875     799999999


Q ss_pred             EEeecCCCC
Q psy17615        451 YITTGGTFQ  459 (459)
Q Consensus       451 Y~t~sg~y~  459 (459)
                      |+|+||+|+
T Consensus       424 Y~t~sg~y~  432 (435)
T 2vgl_M          424 YIGRSGIYE  432 (435)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEeCCeEE
Confidence            999999996
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4 Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 459
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 4e-70
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 2e-37
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 6e-25
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  221 bits (565), Expect = 4e-70
 Identities = 67/303 (22%), Positives = 119/303 (39%), Gaps = 59/303 (19%)

Query: 187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMN 246
           + WRR G+KY  NE + DV+E V+ ++   G  + + + G +     LSGMP+      +
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 247 PRLF---------------------DDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYH 285
             +                      DD +FH CVR  ++++ER +SFIPPDG F LM Y 
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 286 INTQNLVAIPLYINHNINF-KQNKIDMTIGPKQTIGRTI--ENIVIEIPMPSVVLNCTLL 342
             T   + +P  +   +    + K+++ +  K     ++  + I + IP P       ++
Sbjct: 121 --TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVI 178

Query: 343 QNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSF 402
             +GK  +   +  + W +                                K   I    
Sbjct: 179 CMKGKAKYKASENAIVWKIKRMAGM--------------------------KESQISAEI 212

Query: 403 TVQSGQENHNF-NLTINVKFTINQLAISGLKVNRLDMYGEK-----YKPFKGVKYITTGG 456
            +    +   +    I++ F +   A SGLKV  L ++  K     +   K V+YI   G
Sbjct: 213 ELLPTNDKKKWARPPISMNFEV-PFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 271

Query: 457 TFQ 459
            ++
Sbjct: 272 IYE 274

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.96
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 93.8
d2fh5a1129 Signal recognition particle receptor alpha subunit 93.21
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-60  Score=464.10  Aligned_cols=244  Identities=27%  Similarity=0.544  Sum_probs=214.7

Q ss_pred             cccccCCcccccceeEEEEEEEEEEEEeCCCCEEEEEEEEEEEEEEEEcCCCceEEEecCC-------------------
Q psy17615        187 VPWRRTGVKYTNNEAYFDVIEEVDAIIDKTGSTIFSEIQGYIDCCIKLSGMPDLTLSFMNP-------------------  247 (459)
Q Consensus       187 ~~WR~~~~~~~~nEi~vdV~E~v~~~~~~~G~i~~~~i~G~I~~~~~LsG~P~~~l~ln~~-------------------  247 (459)
                      +|||++|++|++|||||||+|+++|+++++|.+++++|.|+|.|+|+|+|+|+|+|+||++                   
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            6999999999999999999999999999999999999999999999999999999999854                   


Q ss_pred             --ccccccccccccccccccccceEEEeCCCCcEEEEEEEecCCCccccCeEEEEEEEEe-CCEEEEEEeecCCCC--Cc
Q psy17615        248 --RLFDDVSFHPCVRFKRWEAERILSFIPPDGNFRLMSYHINTQNLVAIPLYINHNINFK-QNKIDMTIGPKQTIG--RT  322 (459)
Q Consensus       248 --~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~~lP~~v~~~~~~~-~~~~e~~l~~~~~~~--~~  322 (459)
                        ..|+||+||+|||++.|+++|+|+|+||||+|+||+||+...  ..+||.+.+++... ++++++.+++++++.  ..
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~--~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~  158 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLL  158 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSS--CCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCC--cCCCcEEEEEEEeccCcEEEEEEEEEeccCCCee
Confidence              258999999999999999999999999999999999999865  57999999999876 568888888887654  46


Q ss_pred             cceEEEEEcCCCCceeeEEEeeceeeEecCcccccccccccccccCCCcceeecCCceEEEEEecccCCCCCcceEEEEE
Q psy17615        323 IENIVIEIPMPSVVLNCTLLQNQGKYTFDPIKKILTWDLHSTERSGDQGKYTFDPIKKILTWDVGRIDIENKLPNIRGSF  402 (459)
Q Consensus       323 ~~~v~I~ip~P~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~W~I~~~~~~~~~~~l~g~~  402 (459)
                      ++||.|+||+|.++..+.+.++.|+++|++                         ++++++|+|+++++ +.+++|+|++
T Consensus       159 ~~~v~I~iP~P~~~~~~~~~~~~G~~~y~~-------------------------~~~~l~W~I~k~~~-~~~~~l~~~~  212 (277)
T d2pr9a1         159 AQKIEVRIPTPLNTSGVQVICMKGKAKYKA-------------------------SENAIVWKIKRMAG-MKESQISAEI  212 (277)
T ss_dssp             EEEEEEEEECCTTEEEEEEEESSSEEEEEG-------------------------GGTEEEEEEEEEET-TCEEEEEEEE
T ss_pred             eeEEEEEeeCCCcccCceEEecCceEEEec-------------------------cCCEEEEecccccC-CccceEEEEE
Confidence            899999999999988888887777766544                         99999999999998 7889999999


Q ss_pred             EecCCCCCC-CCCcceEEEEEECceecccceEeEEEeec-----cCCCcccceEEEeecCCCC
Q psy17615        403 TVQSGQENH-NFNLTINVKFTINQLAISGLKVNRLDMYG-----EKYKPFKGVKYITTGGTFQ  459 (459)
Q Consensus       403 ~~~~~~~~~-~~~~~i~v~F~i~~~t~SGl~V~~l~v~~-----~~~~p~k~VrY~t~sg~y~  459 (459)
                      ++.+....+ ..++|++|+|++| +++||++|++|+|.+     ++|+|+|||||+|+||+||
T Consensus       213 ~~~~~~~~~~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~  274 (277)
T d2pr9a1         213 ELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYE  274 (277)
T ss_dssp             EECCCCSSSCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEE
T ss_pred             EeccCCCCccccCCcEEEEEEec-ccccceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEE
Confidence            998765433 4578999999999 799999999999975     3589999999999999996
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure