Psyllid ID: psy17648

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530
MTQFGKYYIPSLRAFINVGWETVKTQLPEQGPCMDVMMKMTGRNTEGESATGQSGEHIHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNTFSMGGSFDEGGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
cccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHHHccccccHHcHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccccccccccHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHEEEHHHHHHHHHHHHHHHEEHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccEEEHEHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcccccHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mtqfgkyyipSLRAFINVGWEtvktqlpeqgpcMDVMMKmtgrntegesatgqsgehihfgnniqqrktdgtiemstmkgyggvdecggakdfqasrsntfsmggsfdeggggefgersRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLyeidpntgqrvrvRNSYVSIasecfgpvwgARAVNLAQMIELLMTCILYVVVCGdlmvgsfpdgaidtrSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLqigdwgwgkvkwtldmenfpiSLGVIVFSYTSqiflptlegnlidrskfdwmLDWSHIAAAIFKSMFGYLCfltfqndtQQVITNNFDSAWFRGFVNFFLVVKALlsyplpyyAACELLEtnyfkggdsqfpsiwhldgelKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCyfhlklkggslsiQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
mtqfgkyyipslRAFINVGWETVKTQLPEQGPCMDVMMKMTGRNTEGEsatgqsgehihfgnniqqrktdGTIEMSTMKGYGGVDECGGAKDFQASRSNTFSmggsfdeggggeFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
MTQFGKYYIPSLRAFINVGWETVKTQLPEQGPCMDVMMKMTGRNTEGESATGQSGEHIHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNTfsmggsfdeggggefgersRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMligifliplgflKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
***FGKYYIPSLRAFINVGWETVKTQL**********************************************************************************************KINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIG***
*********PSLRAFINV*************************************************************************************************************AAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEID********VRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFE*G***
MTQFGKYYIPSLRAFINVGWETVKTQLPEQGPCMDVMMKMTGR***********GEHIHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNTFSMGGSFDEGGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
***FGKYYIPSLRAFINVGWETVKTQLPEQGPC*D*M*******************************T**T****************************************GEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
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MTQFGKYYIPSLRAFINVGWETVKTQLPEQGPCMDVMMKMTGRNTEGESATGQSGEHIHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNTFSMGGSFDEGGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query530 2.2.26 [Sep-21-2011]
Q6DIV6518 Vesicular inhibitory amin yes N/A 0.901 0.922 0.454 1e-119
Q6PF45518 Vesicular inhibitory amin N/A N/A 0.894 0.915 0.452 1e-119
Q95KE2525 Vesicular inhibitory amin N/A N/A 0.847 0.855 0.468 1e-118
O35633525 Vesicular inhibitory amin yes N/A 0.847 0.855 0.473 1e-118
O35458525 Vesicular inhibitory amin yes N/A 0.847 0.855 0.473 1e-118
Q9H598525 Vesicular inhibitory amin yes N/A 0.766 0.773 0.492 1e-114
P34579486 Vesicular GABA transporte yes N/A 0.783 0.853 0.438 3e-96
Q8K4D3475 Proton-coupled amino acid no N/A 0.760 0.848 0.228 9e-17
Q924A5475 Proton-coupled amino acid no N/A 0.760 0.848 0.224 2e-15
Q495M3483 Proton-coupled amino acid no N/A 0.779 0.855 0.212 8e-15
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function desciption
 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/486 (45%), Positives = 306/486 (62%), Gaps = 8/486 (1%)

Query: 48  ESATGQSGEHIHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNT-FSMGGS 106
           ++AT +        +++      G ++M  +K      +     D    R  T      S
Sbjct: 34  QAATDEEALGFAHCDDLDMEHRQG-LQMDILKTEVPSGDPTAEGDSHYQRDGTGPPSSAS 92

Query: 107 FDEGGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYIC 166
            DEG   E     + KI  W+A WNVTNAIQGMF++ LP+A+L GGY  +F +I  A +C
Sbjct: 93  KDEGLCSELSSYGKPKITAWEAGWNVTNAIQGMFVLGLPYAILHGGYLGLFLIIFAAVVC 152

Query: 167 CYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVW---GARAVNLAQMIELLMTC 223
           CYTGKIL+ CLYE +   G+ VRVR+SYV IA+ C  P +   G R VN+AQ+IEL+MTC
Sbjct: 153 CYTGKILIACLYE-ENEDGETVRVRDSYVDIANACCAPRFPKLGGRVVNVAQIIELVMTC 211

Query: 224 ILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVIN 283
           ILYVVV G+LM  SFP   I  +SW ++    L+P  FLK+L  VS  S  CT++H VIN
Sbjct: 212 ILYVVVSGNLMYNSFPSLPISQKSWSIIATAMLLPCAFLKNLKAVSKFSLLCTLAHFVIN 271

Query: 284 VVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDW 343
           V+++ YCL +  DW W KVK+ +D++ FPIS+G+IVFSYTSQIFLP+LEGN+    +F  
Sbjct: 272 VLVIAYCLSRARDWAWDKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQSPKEFHC 331

Query: 344 MLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLP 403
           M++W+HIAA I K +F  + +LT+ ++T++VIT+N  S   R  VN FLV KALLSYPLP
Sbjct: 332 MMNWTHIAACILKGLFALVAYLTWADETKEVITDNLPST-IRAVVNLFLVAKALLSYPLP 390

Query: 404 YYAACELLETNYFK-GGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILM 462
           ++AA E+LE + F+ G  + FP+ +  DG LK WGL  R A+V+FT++MA+++PHFA+LM
Sbjct: 391 FFAAVEVLEKSLFQEGARAFFPNCYGGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLM 450

Query: 463 GFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQ 522
           G  GS TG  L F+ P  FHLKL    L    V FD  +  +G +  + G   S   +I+
Sbjct: 451 GLTGSLTGAGLCFLLPSLFHLKLLWRKLQWHQVFFDVSIFVIGSICSVSGFVHSLEGLIE 510

Query: 523 AFEIGL 528
           AF   +
Sbjct: 511 AFRFNI 516
Involved in the uptake of GABA and glycine into the synaptic vesicles.
Xenopus tropicalis (taxid: 8364)
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description
>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description
>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
328722918546 PREDICTED: vesicular inhibitory amino ac 0.998 0.968 0.700 0.0
380015103533 PREDICTED: vesicular inhibitory amino ac 0.988 0.983 0.705 0.0
48100282533 PREDICTED: vesicular inhibitory amino ac 0.988 0.983 0.701 0.0
307167214535 Vesicular inhibitory amino acid transpor 0.992 0.983 0.699 0.0
156554002534 PREDICTED: vesicular inhibitory amino ac 0.988 0.981 0.703 0.0
383864035534 PREDICTED: vesicular inhibitory amino ac 0.992 0.985 0.695 0.0
340717138534 PREDICTED: vesicular inhibitory amino ac 0.992 0.985 0.695 0.0
322800345546 hypothetical protein SINV_02833 [Solenop 0.994 0.965 0.697 0.0
307205720542 Vesicular inhibitory amino acid transpor 1.0 0.977 0.690 0.0
242022778532 Vesicular inhibitory amino acid transpor 0.988 0.984 0.674 0.0
>gi|328722918|ref|XP_001943082.2| PREDICTED: vesicular inhibitory amino acid transporter-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/547 (70%), Positives = 443/547 (80%), Gaps = 18/547 (3%)

Query: 1   MTQFGKYYIPSLRAFINVGWETVKTQLPEQGPCMDVMMKMTGRNTEGESATGQSGEHIHF 60
           M  FG++Y+P   A +NV W  VK  +PE  PC++ +MK  G      +A+  +G     
Sbjct: 1   MANFGRFYVPPFGAAMNVVWAAVKAYVPEDSPCVEAIMKRRGDRAAAGAASAGTGTGAAD 60

Query: 61  GNNIQQRKTDG----------TIEMSTMKGYGGVDECGGAKDFQASRSNT---FSMG-GS 106
           G + ++ +  G          T   S +  YGGV++  G  D       T   FSM  GS
Sbjct: 61  GVDAERNRLQGGGKPDTNPFRTTCNSELSSYGGVEKRDGGVDGDGVTKRTPQAFSMDDGS 120

Query: 107 FDE--GGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAY 164
           FDE   GGGEFG R RHKI+EWQAAWNVTNAIQGMF+VSLPFAVLRGGYWAI AMIGIAY
Sbjct: 121 FDEDSSGGGEFG-RGRHKIDEWQAAWNVTNAIQGMFVVSLPFAVLRGGYWAIVAMIGIAY 179

Query: 165 ICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCI 224
           ICCYTGKILVECLYE+D NTGQRVRVR+SYVSIA +CFGPVWGARAVN+AQMIELLMTCI
Sbjct: 180 ICCYTGKILVECLYELDLNTGQRVRVRDSYVSIARDCFGPVWGARAVNVAQMIELLMTCI 239

Query: 225 LYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINV 284
           LYVV CGDLM G+FPDG IDTRSWMM+ G+ LIPLGFLK LHHVS+LSFWCTMSHIVIN+
Sbjct: 240 LYVVACGDLMEGTFPDGVIDTRSWMMITGVLLIPLGFLKHLHHVSLLSFWCTMSHIVINI 299

Query: 285 VILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWM 344
           +ILGYC+L++ DWGW KVKWT+D+ENFPISLG+IVFSYTSQIFLPTLEGNL DRSKFDWM
Sbjct: 300 IILGYCVLELPDWGWSKVKWTIDVENFPISLGMIVFSYTSQIFLPTLEGNLSDRSKFDWM 359

Query: 345 LDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPY 404
           L+WSHIAAAIFKS+FGY+CFLTFQNDTQQVITNN  S  F+G VN FLVVK LLSYPLPY
Sbjct: 360 LEWSHIAAAIFKSLFGYVCFLTFQNDTQQVITNNLHSPAFKGLVNVFLVVKVLLSYPLPY 419

Query: 405 YAACELLETNYFKGGDSQ-FPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMG 463
           YAAC++LE ++F G  +  +PSIWH+DGELKVWGL FRVA++L T+ MA+ IPHFAILMG
Sbjct: 420 YAACDILEKSFFIGPPATLYPSIWHVDGELKVWGLAFRVAIILCTVFMAISIPHFAILMG 479

Query: 464 FIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQA 523
           FIGSFTGTMLSFIWPCYFHLKLKG SL  +++ F+CFVIFLGCLFG+IGVYDSG+A+I+A
Sbjct: 480 FIGSFTGTMLSFIWPCYFHLKLKGDSLEWRTIMFNCFVIFLGCLFGVIGVYDSGTAIIKA 539

Query: 524 FEIGLPF 530
           F+IGLPF
Sbjct: 540 FQIGLPF 546

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380015103|ref|XP_003691550.1| PREDICTED: vesicular inhibitory amino acid transporter-like [Apis florea] Back     alignment and taxonomy information
>gi|48100282|ref|XP_392615.1| PREDICTED: vesicular inhibitory amino acid transporter-like [Apis mellifera] Back     alignment and taxonomy information
>gi|307167214|gb|EFN60918.1| Vesicular inhibitory amino acid transporter [Camponotus floridanus] Back     alignment and taxonomy information
>gi|156554002|ref|XP_001603454.1| PREDICTED: vesicular inhibitory amino acid transporter-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383864035|ref|XP_003707485.1| PREDICTED: vesicular inhibitory amino acid transporter-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340717138|ref|XP_003397044.1| PREDICTED: vesicular inhibitory amino acid transporter-like [Bombus terrestris] gi|350416418|ref|XP_003490943.1| PREDICTED: vesicular inhibitory amino acid transporter-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322800345|gb|EFZ21349.1| hypothetical protein SINV_02833 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307205720|gb|EFN83965.1| Vesicular inhibitory amino acid transporter [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242022778|ref|XP_002431815.1| Vesicular inhibitory amino acid transporter, putative [Pediculus humanus corporis] gi|212517147|gb|EEB19077.1| Vesicular inhibitory amino acid transporter, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query530
FB|FBgn0033911549 VGAT "Vesicular GABA Transport 0.771 0.744 0.753 7.7e-174
ZFIN|ZDB-GENE-061201-1530 slc32a1 "solute carrier family 0.766 0.766 0.5 1.9e-108
UNIPROTKB|F1NLZ7422 SLC32A1 "Uncharacterized prote 0.756 0.950 0.496 9.2e-107
UNIPROTKB|Q9H598525 SLC32A1 "Vesicular inhibitory 0.756 0.763 0.488 6.5e-106
UNIPROTKB|G3N354526 SLC32A1 "Uncharacterized prote 0.756 0.762 0.488 8.3e-106
UNIPROTKB|E2QU68526 SLC32A1 "Uncharacterized prote 0.756 0.762 0.488 8.3e-106
UNIPROTKB|F1SDX2526 SLC32A1 "Uncharacterized prote 0.756 0.762 0.488 8.3e-106
MGI|MGI:1194488525 Slc32a1 "solute carrier family 0.756 0.763 0.488 8.3e-106
RGD|621402525 Slc32a1 "solute carrier family 0.756 0.763 0.488 8.3e-106
WB|WBGene00006783486 unc-47 [Caenorhabditis elegans 0.737 0.804 0.455 4e-90
FB|FBgn0033911 VGAT "Vesicular GABA Transporter" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1689 (599.6 bits), Expect = 7.7e-174, P = 7.7e-174
 Identities = 309/410 (75%), Positives = 357/410 (87%)

Query:   122 KINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEID 181
             KI+E+QAAWNVTNAIQGMFIVSLPFAVL GGYWAI AM+GIA+ICCYTGK+LV+CLYE D
Sbjct:   140 KIDEFQAAWNVTNAIQGMFIVSLPFAVLHGGYWAIVAMVGIAHICCYTGKVLVQCLYEPD 199

Query:   182 PNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG 241
             P TGQ VRVR+SYV+IA  CFGP  GARAV++AQ+IELLMTCILYVVVCGDL+ G++P G
Sbjct:   200 PATGQMVRVRDSYVAIAKVCFGPKLGARAVSIAQLIELLMTCILYVVVCGDLLAGTYPQG 259

Query:   242 AIDTRSWMMXXXXXXXXXXXXKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGK 301
             + D+RSWM+            KSL  VS LSFWCTMSHIVIN VILGYCLLQIGDWGW K
Sbjct:   260 SFDSRSWMLFVGIFLLPMGFLKSLKMVSTLSFWCTMSHIVINAVILGYCLLQIGDWGWSK 319

Query:   302 VKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGY 361
             V++++DMENFPISLGVIVFSYTSQIFLPTLEGN+IDRSKF+WMLDWSHIAAA+FK+ FGY
Sbjct:   320 VRFSIDMENFPISLGVIVFSYTSQIFLPTLEGNMIDRSKFNWMLDWSHIAAAVFKAGFGY 379

Query:   362 LCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGD- 420
             +CFLTFQNDTQQVITNN  S  F+G VNFFLV+KALLSYPLPYYAACELLE N+F+G   
Sbjct:   380 ICFLTFQNDTQQVITNNLHSQGFKGMVNFFLVIKALLSYPLPYYAACELLERNFFRGPPK 439

Query:   421 SQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCY 480
             ++FP+IW+LDGELKVWGL FRV V++ TI+MA+FIPHF+ILMGFIGSFTGTMLSFIWPCY
Sbjct:   440 TKFPTIWNLDGELKVWGLGFRVGVIVSTILMAIFIPHFSILMGFIGSFTGTMLSFIWPCY 499

Query:   481 FHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF 530
             FH+K+KG  L  + +A D  +I LG LFG+IG+YDSG+A+I AFEIGLPF
Sbjct:   500 FHIKIKGHLLDQKEIAKDYLIIGLGVLFGVIGIYDSGNALINAFEIGLPF 549
GO:0015495 "gamma-aminobutyric acid:hydrogen symporter activity" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0003333 "amino acid transmembrane transport" evidence=ISS
GO:0007632 "visual behavior" evidence=IDA
ZFIN|ZDB-GENE-061201-1 slc32a1 "solute carrier family 32 (GABA vesicular transporter), member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLZ7 SLC32A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H598 SLC32A1 "Vesicular inhibitory amino acid transporter" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3N354 SLC32A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU68 SLC32A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDX2 SLC32A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1194488 Slc32a1 "solute carrier family 32 (GABA vesicular transporter), member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621402 Slc32a1 "solute carrier family 32 (GABA vesicular transporter), member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00006783 unc-47 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O35458VIAAT_RATNo assigned EC number0.47320.84710.8552yesN/A
Q9H598VIAAT_HUMANNo assigned EC number0.49270.76600.7733yesN/A
P34579UNC47_CAEELNo assigned EC number0.43850.78300.8539yesN/A
Q6DIV6VIAAT_XENTRNo assigned EC number0.45470.90180.9227yesN/A
O35633VIAAT_MOUSENo assigned EC number0.47320.84710.8552yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query530
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 5e-81
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-10
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 4e-07
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  258 bits (661), Expect = 5e-81
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 26/411 (6%)

Query: 121 HKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYE 179
             I+ WQA +N+  AI G  ++SLP+A  + G+   +  ++ +  I  YT  +LV+C   
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 180 IDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFP 239
           +D   G+R +   SY  +    FGP  G   +  A ++ L   CI Y++  GD +   F 
Sbjct: 61  VDKVKGKRRK---SYGDLGYRLFGP-KGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD 116

Query: 240 ----DGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHI---VINVVILGYCLL 292
                  I    ++++ G+  IPL F+ +L  +S+LS    +S +   ++ + +    +L
Sbjct: 117 SFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176

Query: 293 QIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWM---LDWSH 349
                G    K  + +    +++G+IVF++     L  ++  +   SKF  M   L  + 
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236

Query: 350 IAAAIFKSMFGYLCFLTFQNDTQQVITNNFD-SAWFRGFVNFFLVVKALLSYPLPYYAAC 408
           I   +   + G + +L F N+ +  I  N   S W     N  LV+  LLSYPL  +   
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIR 296

Query: 409 ELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSF 468
           +++E   F+ G S        + + K+  ++ R  +V+ T ++A+ +P     +  +G+ 
Sbjct: 297 QIVENLLFRKGASGKH-----NPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGAT 351

Query: 469 TGTMLSFIWPCYFHLKLKGGSLS-----IQSVAFDCFVIFLGCLFGIIGVY 514
           +G  L+FI P  FHLKLK           +    D   I +G L    GV 
Sbjct: 352 SGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 530
KOG4303|consensus524 100.0
KOG1304|consensus449 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303|consensus437 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305|consensus411 100.0
KOG1287|consensus479 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.98
PRK09664415 tryptophan permease TnaB; Provisional 99.94
PRK10483414 tryptophan permease; Provisional 99.93
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.88
PRK10655438 potE putrescine transporter; Provisional 99.86
PRK15049499 L-asparagine permease; Provisional 99.86
PRK10249458 phenylalanine transporter; Provisional 99.85
COG0833541 LysP Amino acid transporters [Amino acid transport 99.85
PRK10746461 putative transport protein YifK; Provisional 99.85
TIGR00814397 stp serine transporter. The HAAAP family includes 99.84
TIGR00911501 2A0308 L-type amino acid transporter. 99.84
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.83
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.83
PRK10644445 arginine:agmatin antiporter; Provisional 99.83
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.83
TIGR00930 953 2a30 K-Cl cotransporter. 99.83
PRK10836489 lysine transporter; Provisional 99.83
PRK11021410 putative transporter; Provisional 99.83
PRK11387471 S-methylmethionine transporter; Provisional 99.83
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.82
PRK10238456 aromatic amino acid transporter; Provisional 99.82
TIGR00909429 2A0306 amino acid transporter. 99.82
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.82
TIGR00913478 2A0310 amino acid permease (yeast). 99.81
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.8
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.79
PRK10580457 proY putative proline-specific permease; Provision 99.79
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.78
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.78
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.75
KOG1286|consensus554 99.69
COG0531466 PotE Amino acid transporters [Amino acid transport 99.68
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.65
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.63
PRK15238496 inner membrane transporter YjeM; Provisional 99.63
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.6
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.57
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.55
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.5
KOG1289|consensus550 99.3
PF03845320 Spore_permease: Spore germination protein; InterPr 99.14
KOG3832|consensus319 99.02
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.99
COG3949349 Uncharacterized membrane protein [Function unknown 98.71
COG1457442 CodB Purine-cytosine permease and related proteins 98.66
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.65
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.63
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.58
TIGR00813407 sss transporter, SSS family. have different number 98.54
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.54
PRK12488549 acetate permease; Provisional 98.52
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.38
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.33
PRK11017404 codB cytosine permease; Provisional 98.32
KOG2082|consensus 1075 98.3
KOG1288|consensus 945 98.27
PRK09395551 actP acetate permease; Provisional 98.23
PRK11375484 allantoin permease; Provisional 98.21
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.18
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.13
PRK15419502 proline:sodium symporter PutP; Provisional 98.13
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.96
PRK10484523 putative transporter; Provisional 97.93
PRK00701439 manganese transport protein MntH; Reviewed 97.9
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.84
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.76
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.63
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.25
COG4147529 DhlC Predicted symporter [General function predict 97.02
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.85
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.74
PRK15433439 branched-chain amino acid transport system 2 carri 96.44
PHA02764399 hypothetical protein; Provisional 95.86
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 95.72
KOG2083|consensus 643 95.23
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 94.76
KOG2349|consensus 585 94.47
KOG1291|consensus503 94.04
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 93.2
COG0733439 Na+-dependent transporters of the SNF family [Gene 92.31
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.1
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 91.87
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 90.8
PRK15015 701 carbon starvation protein A; Provisional 89.54
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 84.99
PRK15433439 branched-chain amino acid transport system 2 carri 83.07
KOG1289|consensus550 81.41
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 80.65
>KOG4303|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.5e-64  Score=470.27  Aligned_cols=413  Identities=57%  Similarity=1.000  Sum_probs=396.2

Q ss_pred             ccCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648        117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS  196 (530)
Q Consensus       117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~  196 (530)
                      .+.+.|++.+++.+|++|++-|.-|++||+|....|||++.+++.++.+|+||+.+|++|..|-++ +|+-.+.+++|.+
T Consensus       111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYva  189 (524)
T KOG4303|consen  111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYVA  189 (524)
T ss_pred             CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHHH
Confidence            445688999999999999999999999999999999999999999999999999999999998765 7877788999999


Q ss_pred             HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648        197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCT  276 (530)
Q Consensus       197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~  276 (530)
                      ++..+++|+.|...+.+.+.+.+..+|+.|++..+|.++..+|+.+++.+-|++++.+.++|.+++|++|..+.+|.+++
T Consensus       190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct  269 (524)
T KOG4303|consen  190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCT  269 (524)
T ss_pred             HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence            99999999888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccchhhHHHHHHHHHHHHH
Q psy17648        277 MSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFK  356 (530)
Q Consensus       277 ~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~~~~~~Y  356 (530)
                      ++.+++.++++.||.....+++|+..+...|..+++.++|+++|+|..|..+|.+...|+||++|...+.++.+...++-
T Consensus       270 ~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK  349 (524)
T KOG4303|consen  270 ISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFK  349 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHHHHH
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhhhhccCCchhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCC-CCCCCccccCCcchhh
Q psy17648        357 SMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGG-DSQFPSIWHLDGELKV  435 (530)
Q Consensus       357 ~~~g~~gy~~fG~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  435 (530)
                      .++|.++|++||+.++..|.+|+|+..+..++++++++..+.+||+.+|.+.+.+++.++++. +..+|..|+.|++++.
T Consensus       350 ~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~  429 (524)
T KOG4303|consen  350 VVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKE  429 (524)
T ss_pred             HHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhh
Confidence            999999999999999999999999988999999999999999999999999999998877654 7788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCchhhhhhhhhhHHHHHHHHHHHHHH
Q psy17648        436 WGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYD  515 (530)
Q Consensus       436 ~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~y~  515 (530)
                      |.+.+|+++++.++++|+.+|.|..+++++|++.+++++|++|+++|++++++...+.++..+..++++|..+++.|+|.
T Consensus       430 WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~  509 (524)
T KOG4303|consen  430 WGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYF  509 (524)
T ss_pred             heeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCC
Q psy17648        516 SGSAMIQAFEIGLPF  530 (530)
Q Consensus       516 si~~ii~~~~~~~p~  530 (530)
                      |..++|++++.+.|+
T Consensus       510 S~~~Li~A~~~~~~~  524 (524)
T KOG4303|consen  510 SSMELIRAINSADSD  524 (524)
T ss_pred             hhHHHHHHHhccCCC
Confidence            999999999999885

>KOG1304|consensus Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305|consensus Back     alignment and domain information
>KOG1287|consensus Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1286|consensus Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289|consensus Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832|consensus Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>KOG2082|consensus Back     alignment and domain information
>KOG1288|consensus Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG2083|consensus Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG2349|consensus Back     alignment and domain information
>KOG1291|consensus Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG1289|consensus Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.89
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.84
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.76
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.72
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.5
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.01
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 90.7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.89  E-value=1e-20  Score=197.80  Aligned_cols=358  Identities=15%  Similarity=0.102  Sum_probs=235.3

Q ss_pred             cCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648        118 RSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI  197 (530)
Q Consensus       118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l  197 (530)
                      +++|+.+.++.++..+++++|+|++.+|..+.++|..+++.+++.++++...+..+.|..... |+.|       .+.+.
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-------g~y~~   76 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-------GSYAY   76 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-------THHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-------Cchhh
Confidence            367889999999999999999999999988888887666777777777776666666554443 3333       56667


Q ss_pred             HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHH-HHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648        198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMM-LIGIFLIPLGFLKSLHHVSMLSFWCT  276 (530)
Q Consensus       198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~  276 (530)
                      .++.+||. ..++..+..++........+....++.+..++|....+...+.+ +..++++-+...+.++..++++.+.+
T Consensus        77 ~~~~~G~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           77 ARRCFGPF-LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             HHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHhHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            78899995 56778888888777777778888888888777643222111211 11222222333357888888888877


Q ss_pred             HHHHHHHHhheeeeeeecCccCC-cccc--ccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHH
Q psy17648        277 MSHIVINVVILGYCLLQIGDWGW-GKVK--WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAA  352 (530)
Q Consensus       277 ~~~~~~~~iii~~~~~~~~~~~~-~~~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~  352 (530)
                      ..++..+++++..++........ ++..  ...++.++..++...+|+|.|++....+.+|+|||+| .||++..+..++
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~  235 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA  235 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence            76666555444433322211111 1111  1113456788999999999999999999999999987 699999999999


Q ss_pred             HHHHHHHHhHhhhhccCCch----h---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCc
Q psy17648        353 AIFKSMFGYLCFLTFQNDTQ----Q---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPS  425 (530)
Q Consensus       353 ~~~Y~~~g~~gy~~fG~~~~----~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~  425 (530)
                      .++|++..+......+.+..    .   .+......++...++.+...++.+.+.....+...|.++..-   |++..|+
T Consensus       236 ~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a---~dg~lP~  312 (445)
T 3l1l_A          236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA---DDGLFPP  312 (445)
T ss_dssp             HHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HTTSSCG
T ss_pred             HHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCcH
Confidence            99999998877766553321    1   122222233566778888888888999999999999987653   2344554


Q ss_pred             cccC--CcchhhHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCC
Q psy17648        426 IWHL--DGELKVWGLMFRVAVVLFTIMMAVFI----PHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSL  490 (530)
Q Consensus       426 ~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~i----p~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~  490 (530)
                      ...+  +++.|...+++..++..+..++ ...    ..++.+.++.+  ....+.|.++++.+++.|+++.
T Consensus       313 ~~~~~~~~~~P~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          313 IFARVNKAGTPVAGLIIVGILMTIFQLS-SISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             GGGCCCTTCCCHHHHHHHHHHHHHHHHS-TTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            3221  3456666555554433332211 112    24677777744  4567888999998888876543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query530
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 84.68
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.68  E-value=18  Score=34.74  Aligned_cols=100  Identities=10%  Similarity=0.039  Sum_probs=55.4

Q ss_pred             ccHHHHHHHHHhhhhcccc-chhHHH-HHhccHHHHH----HHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648        123 INEWQAAWNVTNAIQGMFI-VSLPFA-VLRGGYWAIF----AMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS  196 (530)
Q Consensus       123 ~s~~~~~~~l~~~~iG~Gi-L~lP~a-~~~~G~~gii----~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~  196 (530)
                      .+..+-++..++..+|.|= .-.||- .++.|..-++    +++++|+=..+.=..+.|..+.     |    ....+..
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-----g----~i~~~~~   75 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-----Q----GHGTTPA   75 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-----T----TCCSHHH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----C----cccHHHH
Confidence            3457888899999999975 568987 5666743233    3333333333332333333221     1    1447888


Q ss_pred             HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17648        197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGD  232 (530)
Q Consensus       197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~  232 (530)
                      +.....+.+.. ..+.+...+..+..++-|.+..+.
T Consensus        76 i~~~~~~~~~~-~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          76 IFYLLWRNRFA-KILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             HHHHHSCSHHH-HHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCcch-hHHhHHHHHHHHHHHHHHHHHHHH
Confidence            87766654322 334444445555555555555554