Psyllid ID: psy17649

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MKLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK
cccccHHHHcccccccccccccccccEEEcccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccHHHHHHHHHcccccccccccEEEccccccccccccEEEEEEccEEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccccHHHHHHHHHcccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHccccHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHccccHccccccccccHHHHHccccccccHccHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHEHcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHccccccccccEEEEccccccccccccEEEEEEccEEEEEEEEEccccEccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHEEEEEccccccccHHHHHHHHHccccccccccccEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccHHHHHccccHHHHHHHHHHHHHHHHHcc
MKLRKLLIQSSIREFQKRGYKGLLGKylvlsdddkaktfendeklpslpvppldvTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDslipfynmfgpnpteelgleygpgkgvehASLFCHELIKFWFLLRKEklkpqlgtgdkpfcMHTFKKFfntaripgeeiDSIVNYFKteaegscpshviVQCNGHIykmnalhkdstpltvgEWKHQFNSILQasskskgsgiaalsceprskwaENRSYILQKSAKNKQLIEDIDSAMFSvsldntsptndsEICQQLISNdyanryadkSVAVVFFkngasggicehtpfdgmvNVTACFYVLLSLAENLatisedktvrggleapvplefdtdDQITKELSRAKAEQKISRYEISAIRKAFTGFgkaeitelklhpdSFVQMALQLAYYTIHNK
MKLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKtfendeklpslpvppldVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFntaripgeEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALsceprskwaeNRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATisedktvrggleapvplefdtddqITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK
MKLRKLLIQSSIREFQKRgykgllgkylVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAsskskgsgIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK
******LIQSSIREFQKRGYKGLLGKYLVLSD*******************PLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSIL***************************YIL*********I*********************EICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPV*L********************ISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTI***
********************************************LPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAE****************APVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHN*
MKLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQA**********ALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK
MKLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHN*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
O19094 612 Peroxisomal carnitine O-o yes N/A 0.925 0.691 0.370 1e-79
P11466 612 Peroxisomal carnitine O-o yes N/A 0.925 0.691 0.367 2e-78
Q9DC50 612 Peroxisomal carnitine O-o yes N/A 0.925 0.691 0.363 2e-77
Q9UKG9 612 Peroxisomal carnitine O-o yes N/A 0.921 0.687 0.362 4e-75
P43155 626 Carnitine O-acetyltransfe no N/A 0.877 0.640 0.279 4e-47
P52826 627 Carnitine O-acetyltransfe N/A N/A 0.873 0.636 0.280 4e-46
Q704S8 626 Carnitine O-acetyltransfe no N/A 0.877 0.640 0.272 7e-46
P47934 626 Carnitine O-acetyltransfe no N/A 0.877 0.640 0.263 3e-45
P32796 670 Carnitine O-acetyltransfe yes N/A 0.881 0.601 0.286 4e-40
Q92523 772 Carnitine O-palmitoyltran no N/A 0.870 0.515 0.297 5e-40
>sp|O19094|OCTC_BOVIN Peroxisomal carnitine O-octanoyltransferase OS=Bos taurus GN=CROT PE=1 SV=1 Back     alignment and function desciption
 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 161/435 (37%), Positives = 252/435 (57%), Gaps = 12/435 (2%)

Query: 30  LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
           L+   + +TF+  + LPSLPVP L+ +L+KY++SVKPFA +EE  N + +  +F+NGIG+
Sbjct: 5   LAKSTEERTFQYQDSLPSLPVPSLEESLKKYLESVKPFANEEEYKNTEAIVWKFQNGIGE 64

Query: 90  ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
           +L + LL++A   +NWL  WW   AYL  R       N  GP    E       G  +E 
Sbjct: 65  KLQQKLLQRAKGRRNWLEEWWLNVAYLDVRIPSQLNVNFGGPASHIEHYWPPKEGTQLER 124

Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
            S+     + +W LLRKEKL  +   G+ P  M+ F+  F+T +IPG   DSI+NYF+TE
Sbjct: 125 GSISLWHNLNYWQLLRKEKLAVE-KVGNTPLDMNQFRMLFSTCKIPGITRDSIINYFRTE 183

Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSIL-QASSKSKGSGIAALSC 268
           +EG  PSH+ V C G ++  + +H+    +T  E + Q   I  +  S+  G G+AAL+ 
Sbjct: 184 SEGHSPSHLAVLCRGRVFVFDVMHEGYL-MTAPEIQRQLTYIQKKCHSEPDGPGVAALTT 242

Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTS----PTNDSEICQQLISNDY 324
           E R++WA+ R Y++  + +N  ++E I S++    LD+ S    P + S++  ++++ D 
Sbjct: 243 EERTRWAKAREYLISLNPENLTILEKIQSSLLVFCLDDDSPHVTPEDYSQVSAKILNGDP 302

Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
             R+ DKS  ++ F NG  G  C+H PFD MV V  C+YV  ++ EN       + VR  
Sbjct: 303 TVRWGDKSYNLIAFSNGVFGSNCDHAPFDAMVLVKVCYYVDENILENEGRWKGSEKVR-- 360

Query: 385 LEAPVP--LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSF 442
            + PVP  L F  D+++  ++++AKA+      ++  +  AFT FGK    E +LHPD+F
Sbjct: 361 -DIPVPEELVFTVDEKVLNDINQAKAQYFKQVSDLQLVVYAFTSFGKKLTKEKQLHPDTF 419

Query: 443 VQMALQLAYYTIHNK 457
           +Q+ALQLAYY +H +
Sbjct: 420 IQLALQLAYYRLHGR 434
Beta-oxidation of fatty acids. The highest activity concerns the C6 to C10 chain length substrate.
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: 7
>sp|P11466|OCTC_RAT Peroxisomal carnitine O-octanoyltransferase OS=Rattus norvegicus GN=Crot PE=1 SV=3 Back     alignment and function description
>sp|Q9DC50|OCTC_MOUSE Peroxisomal carnitine O-octanoyltransferase OS=Mus musculus GN=Crot PE=1 SV=1 Back     alignment and function description
>sp|Q9UKG9|OCTC_HUMAN Peroxisomal carnitine O-octanoyltransferase OS=Homo sapiens GN=CROT PE=1 SV=2 Back     alignment and function description
>sp|P43155|CACP_HUMAN Carnitine O-acetyltransferase OS=Homo sapiens GN=CRAT PE=1 SV=5 Back     alignment and function description
>sp|P52826|CACP_COLLI Carnitine O-acetyltransferase OS=Columba livia GN=CRAT PE=1 SV=1 Back     alignment and function description
>sp|Q704S8|CACP_RAT Carnitine O-acetyltransferase OS=Rattus norvegicus GN=Crat PE=1 SV=1 Back     alignment and function description
>sp|P47934|CACP_MOUSE Carnitine O-acetyltransferase OS=Mus musculus GN=Crat PE=1 SV=3 Back     alignment and function description
>sp|P32796|CACP_YEAST Carnitine O-acetyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAT2 PE=1 SV=2 Back     alignment and function description
>sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase 1, muscle isoform OS=Homo sapiens GN=CPT1B PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
157108945 618 carnitine o-acyltransferase [Aedes aegyp 0.927 0.686 0.398 5e-85
242004068 625 carnitine palmitoyltransferase I, putati 0.923 0.675 0.381 2e-83
449280452 612 Peroxisomal carnitine O-octanoyltransfer 0.914 0.683 0.408 6e-83
327274488 612 PREDICTED: peroxisomal carnitine O-octan 0.925 0.691 0.396 2e-82
170037857 618 peroxisomal carnitine O-octanoyltransfer 0.921 0.681 0.384 2e-82
449492219 612 PREDICTED: peroxisomal carnitine O-octan 0.929 0.694 0.397 1e-81
47225424 637 unnamed protein product [Tetraodon nigro 0.929 0.667 0.374 1e-80
410905307 612 PREDICTED: peroxisomal carnitine O-octan 0.929 0.694 0.360 2e-80
432908576 612 PREDICTED: peroxisomal carnitine O-octan 0.925 0.691 0.367 8e-79
342349340 612 carnitine O-octanoyltransferase [Sus scr 0.925 0.691 0.363 1e-78
>gi|157108945|ref|XP_001650455.1| carnitine o-acyltransferase [Aedes aegypti] gi|108879176|gb|EAT43401.1| AAEL005169-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 171/429 (39%), Positives = 252/429 (58%), Gaps = 5/429 (1%)

Query: 30  LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
           L +  K  TF  DE LP+LP+P L+ TL++Y +S+KPF T EEL +  N+ ++FKNGIG 
Sbjct: 9   LQEGSKESTFCYDESLPALPLPKLEDTLKRYFESLKPFGTAEELKHTANIIEKFKNGIGA 68

Query: 90  ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
           ELH+ L +K+  EKNW+  WWE YAYL  R  L+P+  M  P   E +GL+  P   ++ 
Sbjct: 69  ELHRCLEEKSKHEKNWVDKWWEDYAYLTLRMPLMPYCVMAQPLIFEAVGLDPIPENFLKS 128

Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKP-FCMHTFKKFFNTARIPGEEIDSIVNYFKT 208
           A++ C   ++FW LLR EKL+P +    K  F    +K+ FNT R PG E+D IV+YFKT
Sbjct: 129 AAICCSINMRFWKLLRTEKLRPIVSVDKKTKFSSDLYKRLFNTVRTPGLEMDKIVSYFKT 188

Query: 209 EAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQA--SSKSKGSGIAAL 266
           E EG CPSH++V   G ++K+  L ++   L   ++   F  I     S     + +  L
Sbjct: 189 EKEGHCPSHILVIYKGRMFKIEGLFENGEILAPQDFLLCFQQIQYRVDSENVNDADVPVL 248

Query: 267 SCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYAN 326
           + + R+ WA NR+++L+ S  N+ +++D++SA+   SLD   P N SE+    ++ D  +
Sbjct: 249 TNDDRTSWARNRTHLLELSENNRNVMKDVESAISLFSLDTNCPDNHSEVAAITLAGDLHS 308

Query: 327 RYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLE 386
           R+ADKS A V FKNG  G I EH+ +DG ++V+   Y +LS+ E+   I +       L 
Sbjct: 309 RWADKSCATVCFKNGRMGCIGEHSCYDGTISVSMSLYAMLSVFED--GIPDWTVPPRKLV 366

Query: 387 APVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMA 446
            PV L FD DDQI  E+ R K      +  ++     F G+GK  +   K+HPDS++Q A
Sbjct: 367 QPVELVFDLDDQIRTEIVRMKDVSDKVQNCVAVTVDQFVGYGKEYMKSQKIHPDSWIQTA 426

Query: 447 LQLAYYTIH 455
           L LAYY +H
Sbjct: 427 LLLAYYRLH 435

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242004068|ref|XP_002422960.1| carnitine palmitoyltransferase I, putative [Pediculus humanus corporis] gi|212505876|gb|EEB10222.1| carnitine palmitoyltransferase I, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|449280452|gb|EMC87770.1| Peroxisomal carnitine O-octanoyltransferase [Columba livia] Back     alignment and taxonomy information
>gi|327274488|ref|XP_003222009.1| PREDICTED: peroxisomal carnitine O-octanoyltransferase-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|170037857|ref|XP_001846771.1| peroxisomal carnitine O-octanoyltransferase [Culex quinquefasciatus] gi|167881213|gb|EDS44596.1| peroxisomal carnitine O-octanoyltransferase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|449492219|ref|XP_002193438.2| PREDICTED: peroxisomal carnitine O-octanoyltransferase [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|47225424|emb|CAG11907.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|410905307|ref|XP_003966133.1| PREDICTED: peroxisomal carnitine O-octanoyltransferase-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|432908576|ref|XP_004077929.1| PREDICTED: peroxisomal carnitine O-octanoyltransferase-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|342349340|ref|NP_001230146.1| carnitine O-octanoyltransferase [Sus scrofa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
UNIPROTKB|E1BRU9 612 CROT "Uncharacterized protein" 0.921 0.687 0.390 1.3e-75
UNIPROTKB|F1SBY8 612 CROT "Uncharacterized protein" 0.919 0.686 0.360 3.1e-74
UNIPROTKB|O19094 612 CROT "Peroxisomal carnitine O- 0.921 0.687 0.366 6.5e-74
RGD|70908 612 Crot "carnitine O-octanoyltran 0.929 0.694 0.364 1.4e-73
MGI|MGI:1921364 612 Crot "carnitine O-octanoyltran 0.929 0.694 0.360 4.1e-72
UNIPROTKB|C9J3D7 574 CROT "Peroxisomal carnitine O- 0.916 0.729 0.360 2.1e-70
UNIPROTKB|Q9UKG9 612 CROT "Peroxisomal carnitine O- 0.916 0.684 0.360 2.1e-70
ZFIN|ZDB-GENE-050522-35 612 crot "carnitine O-octanoyltran 0.901 0.673 0.386 4.3e-70
UNIPROTKB|G5E5R3 613 CROT "Peroxisomal carnitine O- 0.892 0.665 0.363 5.5e-70
UNIPROTKB|E2RLZ3 615 CROT "Uncharacterized protein" 0.914 0.679 0.366 7e-70
UNIPROTKB|E1BRU9 CROT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 169/433 (39%), Positives = 238/433 (54%)

Query:    32 DDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQEL 91
             +  + +TF+  + LP LPVPPLD +L KY+ SVKPF  QEE    +++ K F+NGIG+EL
Sbjct:     7 ESSEERTFQYQDSLPPLPVPPLDESLSKYLDSVKPFLNQEEYQRTEDIVKRFENGIGKEL 66

Query:    92 HKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHAS 151
             H+ LL++A   +NWL  WW   AYL  R S     NM GP P  E       G  +E A 
Sbjct:    67 HQKLLERAKTRRNWLEDWWLNVAYLDLRISTQINCNMGGPGPYIEHCWPPKEGTQIERAC 126

Query:   152 LFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAE 211
             +     +K+W LLR+EK  P   +G+    M  F+  FNT ++PG   DS+ NYFKT  E
Sbjct:   127 VNIWHTLKYWELLREEKA-PIERSGNAVLDMSQFRMLFNTCKVPGITRDSLCNYFKTVTE 185

Query:   212 GSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-AXXXXXXXXIAALSCEP 270
             G CPSH++V C G ++  + +H+ +  LT  E   Q   I +          + AL+   
Sbjct:   186 GECPSHLVVLCRGRVFAFDTVHEGNM-LTPPELSRQLTFIQRRCDSEPDGPGLPALTSNE 244

Query:   271 RSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSP--TND--SEICQQLISNDYAN 326
             R+KWAE R Y++    KN   +E I  ++F VSLD++SP  T +  +EI +  ++ D   
Sbjct:   245 RTKWAEIREYLISLDPKNLAHLEKIQQSLFVVSLDDSSPHATPEDYTEITRLGLAGDPTV 304

Query:   327 RYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLE 386
             R+ DKS   +FF NG S   C+H+PFD M  +T        + EN         VR  + 
Sbjct:   305 RWGDKSYNSIFFSNGTSSAFCDHSPFDAMALITMLSSAEQKIIENEGKWKGSDKVRD-IP 363

Query:   387 APVPLEFDTDDQITKELSRAKAE--QKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQ 444
              P  L F  D +I  E+ R K    +K+S  +++    AFT FGKA I + KLHPD+FVQ
Sbjct:   364 CPEELVFTVDQKIINEIERTKEMYYEKVSDLQLACY--AFTSFGKALIKKRKLHPDTFVQ 421

Query:   445 MALQLAYYTIHNK 457
             +ALQLAYY  H +
Sbjct:   422 LALQLAYYKCHGR 434
GO:0005739 "mitochondrion" evidence=IEA
GO:0005777 "peroxisome" evidence=IEA
GO:0008458 "carnitine O-octanoyltransferase activity" evidence=IEA
GO:0015908 "fatty acid transport" evidence=IEA
UNIPROTKB|F1SBY8 CROT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O19094 CROT "Peroxisomal carnitine O-octanoyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|70908 Crot "carnitine O-octanoyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921364 Crot "carnitine O-octanoyltransferase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C9J3D7 CROT "Peroxisomal carnitine O-octanoyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKG9 CROT "Peroxisomal carnitine O-octanoyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-35 crot "carnitine O-octanoyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G5E5R3 CROT "Peroxisomal carnitine O-octanoyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLZ3 CROT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DC50OCTC_MOUSE2, ., 3, ., 1, ., 1, 3, 70.36320.92560.6911yesN/A
Q9UKG9OCTC_HUMAN2, ., 3, ., 1, ., 1, 3, 70.36250.92120.6879yesN/A
P11466OCTC_RAT2, ., 3, ., 1, ., 1, 3, 70.36780.92560.6911yesN/A
O19094OCTC_BOVIN2, ., 3, ., 1, ., 1, 3, 70.37010.92560.6911yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
pfam00755 590 pfam00755, Carn_acyltransf, Choline/Carnitine o-ac 1e-109
>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase Back     alignment and domain information 
 Score =  333 bits (856), Expect = e-109
 Identities = 158/432 (36%), Positives = 234/432 (54%), Gaps = 31/432 (7%)

Query: 45  LPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF-KNGIGQELHKSLLKKASEEK 103
           LP LPVP L+ TL++Y+ SVKP  ++EE    + L K+F   G G++L + LL++A +  
Sbjct: 2   LPKLPVPALEDTLDRYLDSVKPLLSEEEFERTEALVKDFSAGGEGEKLQEYLLERAKKTD 61

Query: 104 NWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEY-GPGKGVEHASLFCHELIKFWF 162
           NWLS WW  YAY ++    +P  +  G +  +    +       +  A+   H ++ F  
Sbjct: 62  NWLSEWWLDYAY-LAGRVPLPVNSSPGVDFPKHYFPDTNDQ---LRRAARLIHGILLFKR 117

Query: 163 LLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQC 222
           LL +E+LKP+   G+ P CM+ + + FNT RIPG+  DS+ NYFK++       HV+V C
Sbjct: 118 LLDREELKPETALGNTPLCMNQYYRLFNTCRIPGKPRDSLQNYFKSKNS-----HVVVVC 172

Query: 223 NGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKS--KGSGIAALSCEPRSKWAENRSY 280
            G  YK++ L  +   LT  E + Q   IL  SSKS    + I AL+ EPR +WA+ R  
Sbjct: 173 RGQFYKVDVLDSNGKLLTPDEIERQLAEILSDSSKSQPVEAPIGALTSEPRDEWAKARQK 232

Query: 281 ILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEI----CQ------QLISNDYANRYAD 330
            L K  KNK+ +E I+SA+F V LD+ SP    E      Q           D  NR+ D
Sbjct: 233 -LFKDNKNKESLEKIESALFVVCLDDDSPPVGDEEKLTTSQLSGLHGGGSHGDGTNRWFD 291

Query: 331 KSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVR---GGLEA 387
           KS+ ++ FKNG++G   EH+P DG+  V  C +V     + L +  E   V      L  
Sbjct: 292 KSLQLIVFKNGSTGLNAEHSPADGIPVVHLCEFVYKVDEQILKSTPEGLPVGSPSVSLPL 351

Query: 388 PVPLEFDTDDQITKELSRAKAEQK--ISRYEISAIRKAFTGFGKAEITELKLHPDSFVQM 445
           P  LEF+   +I  ++ +AK +    IS  ++  +   FT FGK  I + KL PD+F+Q+
Sbjct: 352 PEKLEFEITPEIQSDIEKAKEKFDKLISDLDLVVL--QFTNFGKGFIKKCKLSPDAFIQL 409

Query: 446 ALQLAYYTIHNK 457
           ALQLAYY ++ K
Sbjct: 410 ALQLAYYRLYGK 421

Length = 590

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
KOG3717|consensus 612 100.0
PF00755 591 Carn_acyltransf: Choline/Carnitine o-acyltransfera 100.0
KOG3716|consensus 764 100.0
KOG3718|consensus 609 100.0
KOG3719|consensus 638 100.0
>KOG3717|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.2e-112  Score=856.22  Aligned_cols=413  Identities=30%  Similarity=0.526  Sum_probs=375.1

Q ss_pred             cCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccc-HHHHHHHHHHHhhhcccchhhhhhhh
Q psy17649         35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGI-GQELHKSLLKKASEEKNWLSGWWEKY  113 (457)
Q Consensus        35 ~~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~-G~~Lq~~L~~~a~~~~nwl~~~W~~~  113 (457)
                      ....+.+|..||+||||+|++||++||++++||+|++||++|+.++++|.... |++||++|+++++..+||+++||++.
T Consensus         4 ~~~~~~~~~~LPKlPVP~L~~TL~~yl~~~~pl~s~~ef~~tk~i~~~F~~~~gg~~LQ~~L~e~aek~~NWl~~~WL~~   83 (612)
T KOG3717|consen    4 QGTPKAEQTALPKLPVPPLQQTLDHYLQALQPLVSEEEFARTKQLVNEFQAKGGGERLQKLLLERAEKTPNWLSEWWLKE   83 (612)
T ss_pred             CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhhcccchHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999997322 89999999999999999999999999


Q ss_pred             ccccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcccchhhhhhhcCccc
Q psy17649        114 AYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTAR  193 (457)
Q Consensus       114 ~YL~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~~~~~~plcM~qy~~lF~t~R  193 (457)
                      |||.+|.|||+|||   |+++++...+.+.++|+..||.||.++++|+.++++++||+ ++.++.||||+||.++|||||
T Consensus        84 aYL~~R~P~pv~ss---Pg~~fPk~~f~~~~d~l~~aA~li~gvl~f~~~id~~~lp~-e~~~~~plcM~Qy~~lf~t~R  159 (612)
T KOG3717|consen   84 AYLQYRDPVPVNSS---PGVMFPKQDFKTLEDQLRFAAKLISGVLEFKEMIDNESLPV-EKLGGQPLCMNQYYRLFSSCR  159 (612)
T ss_pred             HHHhccCCccccCC---CCcccCccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHhcCCcccHHHHHHHhhccc
Confidence            99999999999999   77777777777789999999999999999999999999999 999999999999999999999


Q ss_pred             ccCCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEE-cCCCccCCHHHHHHHHHHHHh-ccCC-CCCCCccccCCCC
Q psy17649        194 IPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNAL-HKDSTPLTVGEWKHQFNSILQ-ASSK-SKGSGIAALSCEP  270 (457)
Q Consensus       194 iP~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~-~~g~~~ls~~el~~~l~~I~~-~~~~-~~~~~vg~LTa~~  270 (457)
                      +||++.|+++++...  -+++++||+|+||||||.|.++ .|| .++|..+|..||+.|+. +... +...|||+||+++
T Consensus       160 ~Pg~~~D~~~~~~~~--~n~e~~hV~Vi~~nqff~L~v~~~~~-~~ls~~~i~~QL~~Iv~~~~~~~~k~~piGilTsd~  236 (612)
T KOG3717|consen  160 VPGVGQDTIVNQSKT--YNPEPEHVTVICRNQFFELDVYDSDG-KPLSEDDIFVQLEKIVSSSSQPNPKLEPVGILTSDP  236 (612)
T ss_pred             CCCCCcccccccccc--cCCCCceEEEEEcCcEEEEEEEcCCC-CcccHHHHHHHHHHHHHhccCCCCCCCCeeccccCc
Confidence            999999998865222  2466899999999999999999 678 99999999999999998 4322 2335899999999


Q ss_pred             hHHHHHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCC-CCCh-----HHHhhhhcCCC-----CCccccccceEEEec
Q psy17649        271 RSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSP-TNDS-----EICQQLISNDY-----ANRYADKSVAVVFFK  339 (457)
Q Consensus       271 Rd~Wa~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p-~~~~-----e~~~~~l~G~~-----~NRW~DKslq~IV~~  339 (457)
                      ||.||++|+.|++ +|.|+.+|++|++|+|+||||...| ....     +...++|||.|     .|||||||+||||+.
T Consensus       237 Rd~WAe~~~~L~k-d~~N~dsle~I~~s~f~vCLD~~~~~~~~~e~~~~e~a~~~lHGgGs~~ns~NRW~DKTiQfvV~~  315 (612)
T KOG3717|consen  237 RDNWAEAYETLVK-DPVNRDSLETIQKSLFVVCLDATTPPPVGEEVYKTEVARQLLHGGGSKKNSGNRWYDKTLQFVVGT  315 (612)
T ss_pred             hhHHHHHHHHHhc-CcccHHHHHHHhhceEEEEecCCCCCCcccchhhHHHHHHHhhCCCcccCccccchhhceEEEEeC
Confidence            9999999999999 9999999999999999999997655 2222     33445999966     899999999999999


Q ss_pred             CCceeeecccCCCcchhHHHHHHHHHHHHhhccCCccCCCCCCCCCCCCeeeeccCCHHHHHHHHHHHHHHHHHhhccce
Q psy17649        340 NGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISA  419 (457)
Q Consensus       340 nG~~g~~~EHS~~DG~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~L~w~l~~~~~~~I~~a~~~~~~~~~~~~~  419 (457)
                      ||.+|+.+|||++||++++.|.+|+++++.+.++.......+  .+++|++|.|.++++++..|+.|.+.++++++++|+
T Consensus       316 nG~~G~~yEHS~aEG~pi~~l~d~v~~~~~~~~~~~~~~~~~--~~~~p~~L~~~~~p~i~~~i~~a~~~~d~~i~dLd~  393 (612)
T KOG3717|consen  316 NGSCGLTYEHSPAEGIPIVQLMDYVIKYMKKLDPELIRSPSV--PLPPPKKLRFHITPEIQKRIAKAQENLDKLIQDLDI  393 (612)
T ss_pred             CCceeeeeecccccCcchHHHHHHHHHHHHhcCHHhccCCCC--CCCCccccceecCHHHHHHHHHHHHHHHHHHHhhce
Confidence            999999999999999999999999999997655443222222  678999999999999999999999999999999999


Q ss_pred             eeeeecccchhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649        420 IRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK  457 (457)
Q Consensus       420 ~~~~f~~fGk~~iK~~k~SPDafiQ~AlQLA~yr~~G~  457 (457)
                      .++.|+.|||+|||++|+||||||||||||||||+||+
T Consensus       394 ~V~~f~~yGK~FiK~~k~SPDaFIQmalQLA~yk~h~~  431 (612)
T KOG3717|consen  394 TVLKFNHYGKDFIKSQKLSPDAFIQMALQLAFYKLHGR  431 (612)
T ss_pred             EEEEeccccccchhhhCcCchHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999996

>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family Back     alignment and domain information
>KOG3716|consensus Back     alignment and domain information
>KOG3718|consensus Back     alignment and domain information
>KOG3719|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1xmc_A 612 C323m Mutant Structure Of Mouse Carnitine Octanoylt 1e-76
1xmd_A 612 M335v Mutant Structure Of Mouse Carnitine Octanoylt 1e-76
1xl7_A 612 Crystal Structure Of Mouse Carnitine Octanoyltransf 5e-74
2h3p_A 599 Crystal Structure Of Murine Carnitine Acetyltransfe 3e-45
1t7n_A 618 Crystal Structure Of The M564g Mutant Of Murine Cra 3e-45
1t7q_A 618 Crystal Structure Of The F565a Mutant Of Murine Car 3e-45
2h3w_A 599 Crystal Structure Of The S554aM564G MUTANT OF MURIN 3e-45
1ndf_A 596 Carnitine Acetyltransferase In Complex With Carniti 4e-45
1nm8_A 616 Structure Of Human Carnitine Acetyltransferase: Mol 6e-42
1ndb_A 596 Crystal Structure Of Carnitine Acetyltransferase Le 8e-42
2fy2_A 612 Structures Of Ligand Bound Human Choline Acetyltran 4e-40
1t1u_A 639 Structural Insights And Functional Implications Of 2e-37
1q6x_A 644 Crystal Structure Of Rat Choline Acetyltransferase 2e-37
2h4t_A 626 Crystal Structure Of Rat Carnitine Palmitoyltransfe 8e-28
2fw3_A 653 Crystal Structure Of Rat Carnitine Palmitoyltransfe 8e-28
2deb_A 653 Crystal Structure Of Rat Carnitine Palmitoyltransfe 9e-26
>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine Octanoyltransferase Length = 612 Back     alignment and structure 
Iteration: 1

 Score =  283 bits (724), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 243/435 (55%), Gaps = 12/435 (2%)
Query: 30  LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
           L+   + +TF+  + LPSLPVP L+ +L+KY++SVKPFA ++E    + + ++F+ G G+
Sbjct: 5   LTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGK 64
Query: 90  ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
            LH+ LL++A  ++NWL  WW   AYL  R       N  GP P  E       G  +E 
Sbjct: 65  RLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLER 124
Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
            S+     + +W LLR+EKL P   +G+ P  M+ F+  F+T ++PG   DSI+NYFKTE
Sbjct: 125 GSMMLWHNLNYWQLLRREKL-PVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTE 183
Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSIL-QAXXXXXXXXIAALSC 268
           +EG CP+H+ V C G  +  + LH+    +T  E   Q   I  +         IAAL+ 
Sbjct: 184 SEGHCPTHIAVLCRGRAFVFDVLHEGCL-ITPPELLRQLTYIHKKCSNEPVGPSIAALTS 242
Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND----SEICQQLISNDY 324
           E R++WA+ R Y++    +N  L+E I +++F  S++++SP       S++ + L+  D 
Sbjct: 243 EERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDP 302
Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
           + R+ DKS  ++ F NG  G  C+H P+D MV V    YV   + E        + VR  
Sbjct: 303 SVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-- 360
Query: 385 LEAPVP--LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSF 442
            + P+P  L F  D++I  ++S+AKA+   +  ++      FT FGK    E  LHPD+F
Sbjct: 361 -DIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTF 419
Query: 443 VQMALQLAYYTIHNK 457
           +Q+ALQLAYY +H +
Sbjct: 420 IQLALQLAYYRLHGR 434
>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine Octanoyltransferase Length = 612 Back     alignment and structure
>pdb|1XL7|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase Length = 612 Back     alignment and structure
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In Complex With Carnitine And Acetyl-Coa Length = 599 Back     alignment and structure
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat Length = 618 Back     alignment and structure
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine Acetyltransferase In Complex With Carnitine And Coa Length = 618 Back     alignment and structure
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE Carnitine Acetyltransferase In Complex With Hexanoylcarnitine And Coa Length = 599 Back     alignment and structure
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine Length = 596 Back     alignment and structure
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular Basis For Fatty Acyl Transfer Length = 616 Back     alignment and structure
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase Length = 596 Back     alignment and structure
>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase Provide Insight Into Regulation Of Acetylcholine Synthesis Length = 612 Back     alignment and structure
>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline Acetyltransferase Length = 639 Back     alignment and structure
>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase Length = 644 Back     alignment and structure
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii Length = 626 Back     alignment and structure
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2 In Complex With Antidiabetic Drug St1326 Length = 653 Back     alignment and structure
>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2 In Space Group C2221 Length = 653 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
1xl7_A 612 COT, peroxisomal carnitine O-octanoyltransferase; 1e-107
1nm8_A 616 Carnitine O-acetyltransferase; two equally sized d 1e-104
2deb_A 653 CPT II, carnitine O-palmitoyltransferase II, mitoc 7e-99
1t1u_A 639 Choline O-acetyltransferase; choline acetyltransfe 4e-96
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A* Length = 612 Back     alignment and structure
 Score =  330 bits (846), Expect = e-107
 Identities = 157/433 (36%), Positives = 242/433 (55%), Gaps = 8/433 (1%)

Query: 30  LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
           L+   + +TF+  + LPSLPVP L+ +L+KY++SVKPFA ++E    + + ++F+ G G+
Sbjct: 5   LTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGK 64

Query: 90  ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
            LH+ LL++A  ++NWL  WW   AYL  R       N  GP P  E       G  +E 
Sbjct: 65  RLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLER 124

Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
            S+     + +W LLR+EKL P   +G+ P  M+ F+  F+T ++PG   DSI+NYFKTE
Sbjct: 125 GSMMLWHNLNYWQLLRREKL-PVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTE 183

Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSC 268
           +EG CP+H+ V C G  +  + LH+    +T  E   Q   I +  S++  G  IAAL+ 
Sbjct: 184 SEGHCPTHIAVLCRGRAFVFDVLHEGC-LITPPELLRQLTYIHKKCSNEPVGPSIAALTS 242

Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN----DY 324
           E R++WA+ R Y++    +N  L+E I +++F  S++++SP    E   Q+       D 
Sbjct: 243 EERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDP 302

Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
           + R+ DKS  ++ F NG  G  C+H P+D MV V    YV   + E        + VR  
Sbjct: 303 SVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-D 361

Query: 385 LEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQ 444
           +  P  L F  D++I  ++S+AKA+   +  ++      FT FGK    E  LHPD+F+Q
Sbjct: 362 IPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTFIQ 421

Query: 445 MALQLAYYTIHNK 457
           +ALQLAYY +H +
Sbjct: 422 LALQLAYYRLHGR 434
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A* Length = 616 Back     alignment and structure
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A* Length = 653 Back     alignment and structure
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A* Length = 639 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
1xl7_A 612 COT, peroxisomal carnitine O-octanoyltransferase; 100.0
2deb_A 653 CPT II, carnitine O-palmitoyltransferase II, mitoc 100.0
1t1u_A 639 Choline O-acetyltransferase; choline acetyltransfe 100.0
1nm8_A 616 Carnitine O-acetyltransferase; two equally sized d 100.0
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A* Back     alignment and structure
Probab=100.00  E-value=8.6e-119  Score=967.24  Aligned_cols=421  Identities=37%  Similarity=0.682  Sum_probs=375.5

Q ss_pred             CcCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhcccchhhhhhhh
Q psy17649         34 DKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKY  113 (457)
Q Consensus        34 ~~~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~G~~Lq~~L~~~a~~~~nwl~~~W~~~  113 (457)
                      ..++||++|.+|||||||+|++||+|||+||+||+|+|||++|+++|++|++|+|++||++|+++++.++|||+|||+++
T Consensus         9 ~~~~t~~~q~~LP~LPvP~L~~Tl~rYL~s~~Pl~~~ee~~~t~~~v~~F~~g~G~~Lq~~L~~~a~~~~nwl~~~W~~~   88 (612)
T 1xl7_A            9 VEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNV   88 (612)
T ss_dssp             --CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHH
T ss_pred             ccCccccccccCCCCCCCCHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHHhhCcHHHHHHHHHHHhhcCCCchHHHHHhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcccchhhhhhhcCccc
Q psy17649        114 AYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTAR  193 (457)
Q Consensus       114 ~YL~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~~~~~~plcM~qy~~lF~t~R  193 (457)
                      +||++|+||++|+||+.|++++.+.+++.+..|+.|||.+|+++++|+++|++|+||| +..++.||||+||++||||||
T Consensus        89 ~YL~~R~pl~~n~n~~~p~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~L~p-~~~~~~PlcM~Qy~~lF~t~R  167 (612)
T 1xl7_A           89 AYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPV-HKSGNTPLDMNQFRMLFSTCK  167 (612)
T ss_dssp             HTTSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCC-CEETTEECCCGGGGGTSSEEE
T ss_pred             hhcCCCCCeeccccccCceeeecccCCCCCccHHHHHHHHHHHHHHHHHHHHcCCcch-hhcCCccccHHHHHHhcCccc
Confidence            9999999999999998887776554555556799999999999999999999999999 999999999999999999999


Q ss_pred             ccCCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEEcCCCccCCHHHHHHHHHHHHh-ccCCCCCCCccccCCCChH
Q psy17649        194 IPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSCEPRS  272 (457)
Q Consensus       194 iP~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~g~~~ls~~el~~~l~~I~~-~~~~~~~~~vg~LTa~~Rd  272 (457)
                      |||.++|++.+|+.++.|+++++||||+||||||+|+|+++| .+++++||++||+.|++ +...+.+++||+||+++||
T Consensus       168 iP~~~~D~~~~~~~~~~e~~~~~HIvV~~~g~fy~v~v~~~g-~~ls~~el~~ql~~I~~~~~~~~~~~~vg~LTt~~R~  246 (612)
T 1xl7_A          168 VPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEG-CLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERT  246 (612)
T ss_dssp             ECCSSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETT-EECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHH
T ss_pred             cCCCCCCeEEeccccccCCCCCCEEEEEECCEEEEEEEEECC-eeCCHHHHHHHHHHHHhhccccCCCCCccccccCCcH
Confidence            999999999999877666788999999999999999999888 99999999999999998 4444445799999999999


Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCC----CCChHHHhhhhcCCCCCccccccceEEEecCCceeeecc
Q psy17649        273 KWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSP----TNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICE  348 (457)
Q Consensus       273 ~Wa~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p----~~~~e~~~~~l~G~~~NRW~DKslq~IV~~nG~~g~~~E  348 (457)
                      .||++|++|+++++.|+++|+.||+|+||||||+..|    .+..+...++|||+|.|||||||+||||++||.+|+|+|
T Consensus       247 ~WA~~R~~L~~~~~~N~~~L~~IesAlFvvcLDd~~p~~~~~~~~~~~~~~LhG~~~NRWfDKslqlIV~~nG~~G~~~E  326 (612)
T 1xl7_A          247 RWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCD  326 (612)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEEC
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHhCeEEEEeccCCCCCCCCCHHHHHHHhccCCCcceeccccceEEEecCCcEEEecc
Confidence            9999999999879999999999999999999999887    444455566999999999999999999999999999999


Q ss_pred             cCCCcchhHHHHHHHHHHHHhhccCCccCCCCCCCCCCCCeeeeccCCHHHHHHHHHHHHHHHHHhhccceeeeeecccc
Q psy17649        349 HTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFG  428 (457)
Q Consensus       349 HS~~DG~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~L~w~l~~~~~~~I~~a~~~~~~~~~~~~~~~~~f~~fG  428 (457)
                      |||+||+++++++++|++.+.+..+.+....... .++.|++|.|++++++.+.|++|++.++++++++++.++.|++||
T Consensus       327 HS~~DG~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~~L~f~l~~~~~~~I~~a~~~~~~~~~~~~~~~~~f~~yG  405 (612)
T 1xl7_A          327 HAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-DIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFG  405 (612)
T ss_dssp             SSSCCTHHHHHHHHHHHHHHHHTTTCCCSCCCCC-CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHTEEEEEEEEC---
T ss_pred             cccccchHHHHHHHHHHHHHhhcCCccCCCCCCC-CCCCCeEEEeecCHHHHHHHHHHHHHHHHHHhhcceeEEEecCCC
Confidence            9999999999999999988765433332222222 578899999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649        429 KAEITELKLHPDSFVQMALQLAYYTIHNK  457 (457)
Q Consensus       429 k~~iK~~k~SPDafiQ~AlQLA~yr~~G~  457 (457)
                      |++||++|+||||||||||||||||+||+
T Consensus       406 K~~iK~~k~SPDafvQmAlQLA~yr~~G~  434 (612)
T 1xl7_A          406 KKLTKEEALHPDTFIQLALQLAYYRLHGR  434 (612)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhCCCCccHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999996
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A* Back     alignment and structure
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A* Back     alignment and structure
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d1xl7a1382 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octano 1e-114
d1nm8a1377 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Hu 1e-100
d1t1ua1382 c.43.1.3 (A:20-401) Choline O-acetyltransferase {R 3e-96
d1xl7a2 218 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octan 3e-11
d1nm8a2 214 c.43.1.3 (A:386-599) Carnitine acetyltransferase { 4e-11
d1t1ua2 215 c.43.1.3 (A:402-616) Choline O-acetyltransferase { 4e-11
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} Length = 382 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  338 bits (867), Expect = e-114
 Identities = 135/378 (35%), Positives = 213/378 (56%), Gaps = 8/378 (2%)

Query: 37  KTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLL 96
           +TF+  + LPSLPVP L+ +L+KY++SVKPFA ++E    + + ++F+ G G+ LH+ LL
Sbjct: 2   RTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLL 61

Query: 97  KKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHE 156
           ++A  ++NWL  WW   AYL  R       N  GP P  E       G  +E  S+    
Sbjct: 62  ERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWH 121

Query: 157 LIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPS 216
            + +W LLR+EKL     +G+ P  M+ F+  F+T ++PG   DSI+NYFKTE+EG CP+
Sbjct: 122 NLNYWQLLRREKLPVHK-SGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPT 180

Query: 217 HVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSCEPRSKWA 275
           H+ V C G  +  + LH +   +T  E   Q   I +  S++  G  IAAL+ E R++WA
Sbjct: 181 HIAVLCRGRAFVFDVLH-EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWA 239

Query: 276 ENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND----SEICQQLISNDYANRYADK 331
           + R Y++    +N  L+E I +++F  S++++SP       S++ + L+  D + R+ DK
Sbjct: 240 KAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDK 299

Query: 332 SVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPL 391
           S  ++ F NG  G  C+H P+D MV V    YV   + E        + VR  +  P  L
Sbjct: 300 SYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-DIPLPEEL 358

Query: 392 EFDTDDQITKELSRAKAE 409
            F  D++I  ++S+AKA+
Sbjct: 359 VFTVDEKILNDVSQAKAQ 376
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 377 Back     information, alignment and structure
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 382 Back     information, alignment and structure
>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} Length = 218 Back     information, alignment and structure
>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 215 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d1xl7a1382 Peroxisomal carnitine O-octanoyltransferase, COT { 100.0
d1nm8a1377 Carnitine acetyltransferase {Human (Homo sapiens) 100.0
d1t1ua1382 Choline O-acetyltransferase {Rat (Rattus norvegicu 100.0
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-106  Score=825.75  Aligned_cols=377  Identities=36%  Similarity=0.661  Sum_probs=350.5

Q ss_pred             CccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhcccchhhhhhhhcc
Q psy17649         36 AKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYAY  115 (457)
Q Consensus        36 ~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~G~~Lq~~L~~~a~~~~nwl~~~W~~~~Y  115 (457)
                      .+||+||++||+||||+|++||+|||+||+||+|++||++|+++|++|.+|+|++||++|+++++.++|||++||++++|
T Consensus         1 e~Tf~~q~~LP~LPvP~Le~Tl~ryL~s~~pl~~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W~~~~Y   80 (382)
T d1xl7a1           1 ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAY   80 (382)
T ss_dssp             CCTTTTGGGCCCCCCCCHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHHHHHHT
T ss_pred             CccccccCCCCCCCCCCHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCCcchHHHhHHhh
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcccchhhhhhhcCccccc
Q psy17649        116 LMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIP  195 (457)
Q Consensus       116 L~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~~~~~~plcM~qy~~lF~t~RiP  195 (457)
                      |++|.||++|+||++|++.+++..+....+|+.|||.+++++++|+.++++|+|+| +..++.||||+||++||||||||
T Consensus        81 L~~R~pl~~~~n~~~~~~~~~~~~~~~~~~q~~raA~l~~~~~~f~~~l~~~~l~~-~~~~~~plcm~qy~~lF~t~RiP  159 (382)
T d1xl7a1          81 LDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPV-HKSGNTPLDMNQFRMLFSTCKVP  159 (382)
T ss_dssp             TSCCSCHHHHTCEEEECGGGGTTCCCCTTCHHHHHHHHHHHHHHHHHHHHTTCSCC-CEETTEECCCGGGGGTSSEEEEC
T ss_pred             cccCCCccccccccCcccccCCCCCcccchHHHHHHHHHHHHHHHHHHhcccccCc-eecCCEEecHHHHHHhccCEecC
Confidence            99999999999998888877777777788999999999999999999999999999 99999999999999999999999


Q ss_pred             CCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEEcCCCccCCHHHHHHHHHHHHh-ccCCCCCCCccccCCCChHHH
Q psy17649        196 GEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSCEPRSKW  274 (457)
Q Consensus       196 ~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~g~~~ls~~el~~~l~~I~~-~~~~~~~~~vg~LTa~~Rd~W  274 (457)
                      |.++|++.+|++++.++++++||||+||||||+|+|+++| .++++++|++||+.|++ +..++.+++||+||+++||.|
T Consensus       160 g~~~D~~~~~~~~~~~~~~~~HIvVl~~g~~ykv~v~~~~-~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~W  238 (382)
T d1xl7a1         160 GITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEG-CLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRW  238 (382)
T ss_dssp             CSSCCEEEECCCCTTTCCCCCEEEEEETTEEEEEESEETT-EECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHH
T ss_pred             CCCCCceeeccccccCCCCCceEEEEECCceEEEEEeeCC-eECCHHHHHHHHHHHHHhcccCCCCCCccccCccccHHH
Confidence            9999999999888777888999999999999999999888 99999999999999998 555556678999999999999


Q ss_pred             HHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCCCCChHHHh----hhhcCCCCCccccccceEEEecCCceeeecccC
Q psy17649        275 AENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQ----QLISNDYANRYADKSVAVVFFKNGASGGICEHT  350 (457)
Q Consensus       275 a~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p~~~~e~~~----~~l~G~~~NRW~DKslq~IV~~nG~~g~~~EHS  350 (457)
                      |++|++|++.++.|+++|+.||+|+||||||+..|.+.+++..    .++||+|+|||||||+|+||++||++|+|+|||
T Consensus       239 A~~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~~~~~~~~e~~~~~~~~~l~G~~~NRW~DKs~q~IV~~nG~~G~~~EHS  318 (382)
T d1xl7a1         239 AKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHA  318 (382)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHSSCEEEECCCCCCCCSSCCHHHHHHHHSSCGGGCCTTBSCEEEECTTSCEEEEECSS
T ss_pred             HHHHHHHhhCChhhHHHHHHHHhceEEEeecccCCCCChHHHHHHHHhcCcCCCcccCCccCeeEEEeCCCCEEEEeeCC
Confidence            9999999987999999999999999999999988766555433    378999999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhhccCCccCCCCCCCCCCCCeeeeccCCHHHHHHHHHHHHHHHHHhh
Q psy17649        351 PFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRY  415 (457)
Q Consensus       351 ~~DG~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~L~w~l~~~~~~~I~~a~~~~~~~~~  415 (457)
                      ++||++++++++|+.+.+.+.++.+.+..... +++.|++|.|++++++.++|++|++.+++.++
T Consensus       319 ~~DG~~~~~l~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~L~f~l~~~i~~~I~~A~~~~~k~as  382 (382)
T d1xl7a1         319 PYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-DIPLPEELVFTVDEKILNDVSQAKAQHLKAAS  382 (382)
T ss_dssp             SCCTHHHHHHHHHHHHHHHHTTTCCCSCCCCC-CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCCeEEEEecCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998877666655544444 77889999999999999999999999998764
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure