Psyllid ID: psy17655


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------
MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKSS
ccEEEEEccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHccccccccccccEEEEEEcc
ccEEEEEcccEEEEEEcccccEEEEEEccccHHcccHHHHHHHHHHHcccEEccccccccEEEEEEcc
MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVwrdeglvreiSKKEACNVFVYKSS
mkvdlirnrgvalvyvgqpldtvKVKMQTYPQLYSSMIDCCKKVWRDEglvreiskkeacnvfvykss
MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKSS
****LIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVY***
MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYK**
MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKSS
MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MKVDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query68 2.2.26 [Sep-21-2011]
Q9WVD5 301 Mitochondrial ornithine t yes N/A 0.602 0.136 0.536 2e-07
Q9Y619 301 Mitochondrial ornithine t yes N/A 0.602 0.136 0.536 3e-07
Q9BXI2 301 Mitochondrial ornithine t no N/A 0.602 0.136 0.536 1e-06
P97521 301 Mitochondrial carnitine/a no N/A 0.602 0.136 0.5 1e-05
Q9Z2Z6 301 Mitochondrial carnitine/a no N/A 0.602 0.136 0.458 3e-05
Q8HXY2 301 Mitochondrial carnitine/a N/A N/A 0.602 0.136 0.479 3e-05
O43772 301 Mitochondrial carnitine/a no N/A 0.602 0.136 0.479 3e-05
Q10248 298 Uncharacterized mitochond yes N/A 0.602 0.137 0.477 6e-05
Q54BM3 300 Mitochondrial substrate c yes N/A 0.617 0.14 0.444 0.0005
>sp|Q9WVD5|ORNT1_MOUSE Mitochondrial ornithine transporter 1 OS=Mus musculus GN=Slc25a15 PE=2 SV=1 Back     alignment and function desciption
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 26/41 (63%)

Query: 10 GVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGL 50
          G A V  GQP DT+KVKMQT+P LY  + DCC K +   G 
Sbjct: 20 GTACVLTGQPFDTMKVKMQTFPDLYRGLTDCCLKTYSQVGF 60




Ornithine transport across inner mitochondrial membrane, from the cytoplasm to the matrix.
Mus musculus (taxid: 10090)
>sp|Q9Y619|ORNT1_HUMAN Mitochondrial ornithine transporter 1 OS=Homo sapiens GN=SLC25A15 PE=1 SV=1 Back     alignment and function description
>sp|Q9BXI2|ORNT2_HUMAN Mitochondrial ornithine transporter 2 OS=Homo sapiens GN=SLC25A2 PE=1 SV=3 Back     alignment and function description
>sp|P97521|MCAT_RAT Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2Z6|MCAT_MOUSE Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1 Back     alignment and function description
>sp|Q8HXY2|MCAT_MACFA Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1 Back     alignment and function description
>sp|O43772|MCAT_HUMAN Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1 Back     alignment and function description
>sp|Q10248|YD1K_SCHPO Uncharacterized mitochondrial carrier C4G9.20c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.20c PE=3 SV=2 Back     alignment and function description
>sp|Q54BM3|MCFG_DICDI Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query68
156549806 312 PREDICTED: mitochondrial ornithine trans 0.661 0.144 0.666 2e-10
91080329 304 PREDICTED: similar to mitochondrial orni 0.632 0.141 0.697 2e-10
357607271 364 mitochondrial ornithine transporter [Dan 0.632 0.118 0.674 6e-10
157117916 304 mitochondrial ornithine transporter [Aed 0.632 0.141 0.651 8e-10
312375538 300 hypothetical protein AND_14040 [Anophele 0.632 0.143 0.651 2e-09
307206287 328 Mitochondrial ornithine transporter 1 [H 0.632 0.131 0.627 3e-09
332027438 337 Mitochondrial ornithine transporter 1 [A 0.632 0.127 0.604 5e-09
383852109 345 PREDICTED: mitochondrial ornithine trans 0.632 0.124 0.604 5e-09
347963845 303 AGAP000448-PA [Anopheles gambiae str. PE 0.632 0.141 0.604 1e-08
307172383 323 Mitochondrial ornithine transporter 1 [C 0.632 0.133 0.627 1e-08
>gi|156549806|ref|XP_001606527.1| PREDICTED: mitochondrial ornithine transporter 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query: 10 GVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVREI 54
          GVALVYVGQPLDTVKVKMQT+P +Y+ M+DC  K  R +G VR +
Sbjct: 31 GVALVYVGQPLDTVKVKMQTFPTMYNGMVDCFMKTLRTDGFVRGL 75




Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080329|ref|XP_974555.1| PREDICTED: similar to mitochondrial ornithine transporter [Tribolium castaneum] gi|270005604|gb|EFA02052.1| hypothetical protein TcasGA2_TC007680 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357607271|gb|EHJ65426.1| mitochondrial ornithine transporter [Danaus plexippus] Back     alignment and taxonomy information
>gi|157117916|ref|XP_001653099.1| mitochondrial ornithine transporter [Aedes aegypti] gi|108875940|gb|EAT40165.1| AAEL008096-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|312375538|gb|EFR22894.1| hypothetical protein AND_14040 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|307206287|gb|EFN84352.1| Mitochondrial ornithine transporter 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332027438|gb|EGI67521.1| Mitochondrial ornithine transporter 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383852109|ref|XP_003701571.1| PREDICTED: mitochondrial ornithine transporter 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|347963845|ref|XP_310644.5| AGAP000448-PA [Anopheles gambiae str. PEST] gi|333467008|gb|EAA06281.6| AGAP000448-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307172383|gb|EFN63849.1| Mitochondrial ornithine transporter 1 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query68
FB|FBgn0030218 459 CG1628 [Drosophila melanogaste 0.632 0.093 0.558 2.3e-08
UNIPROTKB|J9NTQ7 301 SLC25A2 "Uncharacterized prote 0.588 0.132 0.575 4.6e-08
UNIPROTKB|F2Z35457 SLC25A15 "Mitochondrial ornith 0.529 0.631 0.583 1.1e-07
UNIPROTKB|J9P5G2 268 SLC25A15 "Uncharacterized prot 0.632 0.160 0.511 2.1e-07
UNIPROTKB|Q2KHW4 301 SLC25A15 "Uncharacterized prot 0.588 0.132 0.55 2.1e-07
UNIPROTKB|E2R9M3 301 SLC25A15 "Uncharacterized prot 0.588 0.132 0.55 2.1e-07
UNIPROTKB|Q9Y619 301 SLC25A15 "Mitochondrial ornith 0.588 0.132 0.55 2.1e-07
UNIPROTKB|F1RME0 301 SLC25A2 "Uncharacterized prote 0.588 0.132 0.55 2.1e-07
MGI|MGI:1342274 301 Slc25a15 "solute carrier famil 0.588 0.132 0.55 2.1e-07
ZFIN|ZDB-GENE-060526-35 307 slc25a15b "solute carrier fami 0.602 0.133 0.560 2.2e-07
FB|FBgn0030218 CG1628 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query:    10 GVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVR 52
             G A VYV QPLDTVKVK+QT+P+ Y  M+DC    +R +G++R
Sbjct:   180 GAAQVYVSQPLDTVKVKLQTFPEAYRGMLDCFLSTYRKDGVLR 222




GO:0000064 "L-ornithine transmembrane transporter activity" evidence=ISS;NAS
GO:0022857 "transmembrane transporter activity" evidence=ISS;NAS
GO:0005743 "mitochondrial inner membrane" evidence=ISS;NAS
GO:0005740 "mitochondrial envelope" evidence=ISS
GO:0000066 "mitochondrial ornithine transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0003333 "amino acid transmembrane transport" evidence=ISS
UNIPROTKB|J9NTQ7 SLC25A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z354 SLC25A15 "Mitochondrial ornithine transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5G2 SLC25A15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHW4 SLC25A15 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9M3 SLC25A15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y619 SLC25A15 "Mitochondrial ornithine transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RME0 SLC25A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1342274 Slc25a15 "solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-35 slc25a15b "solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9Y619ORNT1_HUMANNo assigned EC number0.53650.60290.1362yesN/A
Q9WVD5ORNT1_MOUSENo assigned EC number0.53650.60290.1362yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query68
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 7e-10
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
 Score = 49.6 bits (119), Expect = 7e-10
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 10 GVALVYVGQPLDTVKVKMQ----TYPQLYSSMIDCCKKVWRDEGL 50
          G     V  PLD VK ++Q       + Y  ++DC KK++++EG+
Sbjct: 16 GAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60


Length = 96

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 68
KOG0753|consensus317 99.77
KOG0752|consensus 320 99.76
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.75
KOG0759|consensus286 99.74
KOG0752|consensus320 99.72
KOG0764|consensus299 99.7
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 99.7
KOG0751|consensus 694 99.68
PTZ00168259 mitochondrial carrier protein; Provisional 99.67
KOG0764|consensus 299 99.67
PTZ00169 300 ADP/ATP transporter on adenylate translocase; Prov 99.66
KOG0762|consensus311 99.66
PTZ00168 259 mitochondrial carrier protein; Provisional 99.65
KOG0751|consensus694 99.65
KOG0750|consensus304 99.64
KOG0758|consensus 297 99.62
KOG0754|consensus 294 99.61
KOG0757|consensus 319 99.61
KOG0753|consensus 317 99.61
KOG0758|consensus297 99.6
KOG0768|consensus323 99.6
KOG0757|consensus319 99.59
KOG0765|consensus333 99.59
KOG0760|consensus302 99.58
KOG0760|consensus 302 99.56
KOG0768|consensus 323 99.56
KOG0754|consensus294 99.52
KOG0762|consensus 311 99.51
KOG0756|consensus299 99.51
KOG0759|consensus 286 99.51
KOG0761|consensus361 99.51
KOG0766|consensus297 99.5
KOG0766|consensus 297 99.41
KOG0767|consensus 333 99.4
KOG0769|consensus 308 99.39
KOG0755|consensus320 99.38
KOG0767|consensus 333 99.36
KOG0036|consensus463 99.36
KOG0036|consensus 463 99.35
KOG0749|consensus 298 99.34
KOG0749|consensus298 99.34
KOG0765|consensus 333 99.32
KOG0770|consensus 353 99.25
KOG0755|consensus 320 99.24
KOG0761|consensus 361 99.23
KOG0763|consensus 301 99.22
KOG0763|consensus 301 99.21
KOG0770|consensus 353 99.07
KOG0750|consensus 304 99.0
KOG2954|consensus427 98.94
KOG0769|consensus308 98.84
KOG0756|consensus 299 98.81
KOG2745|consensus 321 98.57
KOG1519|consensus297 98.33
KOG2745|consensus 321 98.28
KOG1519|consensus 297 97.49
KOG2954|consensus 427 92.87
>KOG0753|consensus Back     alignment and domain information
Probab=99.77  E-value=5e-19  Score=106.18  Aligned_cols=65  Identities=25%  Similarity=0.412  Sum_probs=61.2

Q ss_pred             hhHHHH--HHHHHHHhhhChHHHHHHHHhhCCC----CCCcHHHHHHHHHHHhCcccccccCcccccccccc
Q psy17655          2 KVDLIR--NRGVALVYVGQPLDTVKVKMQTYPQ----LYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS   67 (68)
Q Consensus         2 ~~~~~a--~ag~~~~~~~~P~d~vk~r~q~~~~----~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~   67 (68)
                      ..||+|  .||.+++++..|.|+||+||+.++.    .|++..||+.+++++||+ .+||||+.|+++|.+|
T Consensus       226 ~~HfvSs~~AGl~aai~s~P~DVVKTRmMNqp~g~~~~Ykgs~DC~~k~v~~EG~-~AlYKGF~Psw~RlGp  296 (317)
T KOG0753|consen  226 PTHFVSSFCAGLAAAILSSPVDVVKTRMMNQPPGRGGLYKGSLDCLIKTVKNEGF-FALYKGFIPSWLRLGP  296 (317)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHhhhccCCCCcCccccchHHHHHHHHHhcCh-HHHHccccccceecCC
Confidence            357888  8999999999999999999999976    899999999999999999 9999999999999987



>KOG0752|consensus Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0752|consensus Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0764|consensus Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0751|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0753|consensus Back     alignment and domain information
>KOG0758|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0757|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0760|consensus Back     alignment and domain information
>KOG0768|consensus Back     alignment and domain information
>KOG0754|consensus Back     alignment and domain information
>KOG0762|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG0759|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0766|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0767|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0036|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0749|consensus Back     alignment and domain information
>KOG0765|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0755|consensus Back     alignment and domain information
>KOG0761|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0763|consensus Back     alignment and domain information
>KOG0770|consensus Back     alignment and domain information
>KOG0750|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information
>KOG0769|consensus Back     alignment and domain information
>KOG0756|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG2745|consensus Back     alignment and domain information
>KOG1519|consensus Back     alignment and domain information
>KOG2954|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query68
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 3e-08
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 4e-07
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 4e-07
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 1e-06
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 2e-05
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-05
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
 Score = 46.9 bits (112), Expect = 3e-08
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 10  GVALVYVGQPLDTVKVKMQTYPQL-----YSSMIDCCKKVWRDEGL 50
           G   V V QP D VKV+ Q   +      Y S ++  K + R+EG+
Sbjct: 115 GALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160


>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query68
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 99.75
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 99.73
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 99.71
1okc_A 297 ADP, ATP carrier protein heart isoform T1; mitocho 99.71
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=99.75  E-value=7.1e-19  Score=105.10  Aligned_cols=63  Identities=22%  Similarity=0.304  Sum_probs=57.6

Q ss_pred             HHHH--HHHHHHHhhhChHHHHHHHHhhCCC-CCCcHHHHHHHHHHHhCcccccccCcccccccccc
Q psy17655          4 DLIR--NRGVALVYVGQPLDTVKVKMQTYPQ-LYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS   67 (68)
Q Consensus         4 ~~~a--~ag~~~~~~~~P~d~vk~r~q~~~~-~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~   67 (68)
                      ++++  ++|++++++++|+|++|+|+|.+.. .|.++++++++++++||+ +|||||+.|+++|..|
T Consensus       205 ~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~-~glyrG~~~~~~r~~p  270 (303)
T 2lck_A          205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGP-RAFYKGFMPSFLRLGS  270 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCT-HHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcCh-HHhhccHHHHHHHHHh
Confidence            4556  8999999999999999999999864 588999999999999999 9999999999999876



>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 68
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 2e-05
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
 Score = 38.2 bits (87), Expect = 2e-05
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 8/49 (16%)

Query: 10 GVALVYVGQPLDTVKVKMQT--------YPQLYSSMIDCCKKVWRDEGL 50
                   P++ VK+ +Q           + Y  +IDC  ++ +++G 
Sbjct: 17 AAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 65


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query68
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.74
d1okca_ 292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.66
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
Probab=99.74  E-value=1.1e-18  Score=101.66  Aligned_cols=59  Identities=27%  Similarity=0.407  Sum_probs=53.5

Q ss_pred             HHHHHHHhhhChHHHHHHHHhhCCC------CCCcHHHHHHHHHHHhCcccccccCcccccccccc
Q psy17655          8 NRGVALVYVGQPLDTVKVKMQTYPQ------LYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS   67 (68)
Q Consensus         8 ~ag~~~~~~~~P~d~vk~r~q~~~~------~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~   67 (68)
                      +++.+++++++|+|++|+|+|.+..      .|.++++++++++++||+ ++||||+.|+++|..|
T Consensus       217 ~~~~~a~~~t~P~dvvktR~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~-~~lyrG~~~~~~r~i~  281 (292)
T d1okca_         217 TVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGP-KAFFKGAWSNVLRGMG  281 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCG-GGGGTTHHHHHHHHHH
T ss_pred             HHHHHHhhccccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhcCc-CcccccHHHHHHHHHH
Confidence            7888999999999999999999853      577999999999999999 9999999999988544



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure